<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:34:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539915" ref_strand="+" ref_description="SGN-E539915 [TUS-59-O19](-)">
      <seq>catttgctgggtttgttgcaatgatgtctgctatatttactttgatgatggagtcatttgcaagtggctatcatagaagagctgaattgagaaaagctcagccagtcaatattggagatgaacaaggacaagatgagcatattgatcatggtccacaaattttgctagaaagatctgattcttcaagtcttatgagacatagattaatatcgcaggttttggaattgggaattttggttcattctgtgattattgggatttcccttggaactacagaaaatcccaaaacaattaaacctctaataatagctttgagttttcatcaattttttgaaggcatgggacttggtggatgtatttcccaggcaaagtataaggttagaacaattataattatggtattgttctttactgtaactactccaagtggaatagctattggaatgatgatatcaaaaggttacaatgagcaaagctcaacagcacttattgtacagggagttcttaattcagcatcagctgggattcttatttacatggcactcgtggatctacttgcaactgattttatgaaccctaaattatacactagtttcaaactccaaattgttgccaatgtatcactcatcttgggagcttgttgtatgtcattattggcaaaatggggtggcacataatttcactagataaattatgtatatagtttttattgggagaaaatatatactacccgttctcattgattatgatatgaattcatcagcttgttgaatctcgaaggatatgccgaacttagtatataagtatgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="13308" stop="10776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13008" g_stop="12794" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12793" i_stop="11779" i_length="1015">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11778" g_stop="11629" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="365" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11628" i_stop="11523" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11522" g_stop="11085" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="803" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="811" polyA_stop="827"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E539915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13008" e_stop="12794"/>
          <exon e_start="11778" e_stop="11629"/>
          <exon e_start="11522" e_stop="11085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAGGTAAATATCTTTTGAGTGATCTGATAACTATATTGCTTGGATTTGTTAATAATATTATCGCACTCGTTATTCGTGGCATTAAAGGTTTTTGCTATCACAAATTAACTAGGGTTGTTTTATACGATAAGAACGTAATACTCTGTGAAAAAATACACAGTAAAAAATAGATTCTTACTGAAATTGTACAATGCTTCGTGATTTTTCTATATAAAAAAACATTTTTCTTTTCTCTTTGATTTATCAAATTATCTAGTGAAATATCTACCGAACATTTTTCATTGTCAAATTTTAATTAAAAGTAGTATTGTTTTTTGTAGTGGATGACATCTGAGGAACTGTACTTTCTTATGTTGATTTATTATGCTGTTCAAACTCTTTGAATATATTGTTAAGTTTTTATTAAATCCTTAAAAATATATTATTTTAAAAATCGAACGCACATTTATTCAGATTAATAATAATTTTATTTTAATACCAAAAAGGAAAAAAAGTACGATATAATTTTATATTGTACTTTTTTTTTTGGTAACTACACAATGAGATGAAAGAAAAAAATTAAAGTTTTTCCTTAATTTTCTTCGTCTAATTTTGCTTCTTTTTTTTTTATTATTGGTTTCTTTTCTAAAACAAAAATAGTTTGAGAGATTTCGAAAGAACAAAAATCATAGAATATGATTTGGGCATATTCTTGTGTCGGTATGTTTGTCTTCTTACATTATAAAAATGCCTAATCTTTTTGTGTTGTCAATTATTCTGTATTTCTTTTTTGTCATGTCATAGAGTTAATAATTCAACTTCATTTGTTCTGATTCAACAGATGTAAGGCTTATTACATAAACAACCTTACAAATTTATCCTAATTATAACTAGTTTTATGTTGCAAAAACCTTCAATTGAAAACTTATTAATAAAAAAACATATTTTACCACAAATATTCTCTAACCAAAGAAAACAATGCAAGATATTTGACATACTATATAATATTCTGAAATTAATAATTCTTCAAATTTTGCAGGTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGGTGGATGTATTTCCCAGGTAAAATTAGTGAAATATTTTAATCCGTTCTAAATTAAGCACTTTTTGAGAGTTCTGACGAACGACTGTACTGTATCTGATATATGATATATGTGTGCATGTGCAGGCAAAGTATAAGGTTAGAACAATTATAATTATGGTATTGTTCTTTACTGTAACTACTCCAAGTGGAATAGCTATTGGAATGATGATATCAAAAGGTTACAATGAGCAAAGCTCAACAGCACTTATTGTACAGGGAGTTCTTAATTCAGCATCAGCTGGGATTCTTATTTACATGGCACTCGTGGATCTACTTGCAACTGATTTTATGAACCCTAAATTATACACTAGTTTCAAACTCCAAATTGTTGCCAATGTATCACTCATCTTGGGAGCTTGTTGTATGTCATTATTGGCAAAATGGGGTGGCACATAATTTCACTAGATAAATTATGTATATAGTTTTTATTGGGAGAAAATATATACTACCCGTTCTCATTGATTATGATATGAATTCATCAGCTTGTTGAATCTCGAAGGATATGCCGAACTTAGTATATAA</genome_strand>
        <mrna_strand>CATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGGTGGATGTATTTCCCAG..........................................................................................................GCAAAGTATAAGGTTAGAACAATTATAATTATGGTATTGTTCTTTACTGTAACTACTCCAAGTGGAATAGCTATTGGAATGATGATATCAAAAGGTTACAATGAGCAAAGCTCAACAGCACTTATTGTACAGGGAGTTCTTAATTCAGCATCAGCTGGGATTCTTATTTACATGGCACTCGTGGATCTACTTGCAACTGATTTTATGAACCCTAAATTATACACTAGTTTCAAACTCCAAATTGTTGCCAATGTATCACTCATCTTGGGAGCTTGTTGTATGTCATTATTGGCAAAATGGGGTGGCACATAATTTCACTAGATAAATTATGTATATAGTTTTTATTGGGAGAAAATATATACTACCCGTTCTCATTGATTATGATATGAATTCATCAGCTTGTTGAATCTCGAAGGATATGCCGAACTTAGTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702230" ref_strand="+" ref_description="SGN-E702230 [FA18AF05]">
      <seq>aattatttctactcctcaaaatcacaaccctaatctacttgtcaatccttgtacaaccaaccctaacctttgcaaattgtacatgtgaacctcaagacaacaaatataatcatcaaactaaacacaaagccttatcctacaaacttatagccatatcttcaatcctttgttcaagtgcacttggagtcatcctcccaatcctcttaaaaaacttcaaatcattgcaaaaaaatgactattcaccccttcaattcatgataaaggcgttcgcggcgggagtgatcttagccacagggtttatacacattctaccagatgcatttgagagcttgactagtccttgtcttagtgaagatttgtgggggagttttccatttgctgggtttgttgcaatgatgtctgctatatttactttgatgatggagtcatttgcaagtggctatcatagaagagctgaattgagaaaagctcagccagtcaatattggagatgaacaaggacaagatgagcatattgatcatggtccacaaattttgctagaaagatctgattcttcaagtcttatgagacatagattaatatcgcaggttttggaattgggaattttggttcattctgtgattattgggatttcccttggaactacagaaaatcccaaaacaattaaacctctaataatagctttgagttttcatcaattttttgaaggcatgggacttggtggatgtatttcccaggcaaagtataaggttagaacaattataattatggtattgttctttactgtaactactccaagtggaatagctattggaatgatgatatcaaaaggttacaatgagcaaagctcaacagcacttattgtacagggagttcttaattcagcatcagctgggaatcttatttacatggcactcgtggatctacttgcaactgattttatgaaccctaaattatacctagtttcaaactccaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="13680" stop="10980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13380" g_stop="12794" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12793" i_stop="11779" i_length="1015">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11778" g_stop="11629" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="737" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11628" i_stop="11523" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11522" g_stop="11280" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="979" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E702230" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>980</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13380" e_stop="12794"/>
          <exon e_start="11778" e_stop="11629"/>
          <exon e_start="11522" e_stop="11280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTCTACTCCTCAAAATCACAACCCTAATCTACTTGTCAATCCTTGTACAACCAACCCTAACCTTTGCAAATTGTACATGTGAACCTCAAGACAACAAATATAATCATCAAACTAAACACAAAGCCTTATCCTACAAACTTATAGCCATATCTTCAATCCTTTGTTCAAGTGCACTTGGAGTCATCCTCCCAATCCTCTTAAAAAACTTCAAATCATTGCAAAAAAATGACTATTCACCCCTTCAATTCATGATAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGGGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAGGTAAATATCTTTTGAGTGATCTGATAACTATATTGCTTGGATTTGTTAATAATATTATCGCACTCGTTATTCGTGGCATTAAAGGTTTTTGCTATCACAAATTAACTAGGGTTGTTTTATACGATAAGAACGTAATACTCTGTGAAAAAATACACAGTAAAAAATAGATTCTTACTGAAATTGTACAATGCTTCGTGATTTTTCTATATAAAAAAACATTTTTCTTTTCTCTTTGATTTATCAAATTATCTAGTGAAATATCTACCGAACATTTTTCATTGTCAAATTTTAATTAAAAGTAGTATTGTTTTTTGTAGTGGATGACATCTGAGGAACTGTACTTTCTTATGTTGATTTATTATGCTGTTCAAACTCTTTGAATATATTGTTAAGTTTTTATTAAATCCTTAAAAATATATTATTTTAAAAATCGAACGCACATTTATTCAGATTAATAATAATTTTATTTTAATACCAAAAAGGAAAAAAAGTACGATATAATTTTATATTGTACTTTTTTTTTTGGTAACTACACAATGAGATGAAAGAAAAAAATTAAAGTTTTTCCTTAATTTTCTTCGTCTAATTTTGCTTCTTTTTTTTTTATTATTGGTTTCTTTTCTAAAACAAAAATAGTTTGAGAGATTTCGAAAGAACAAAAATCATAGAATATGATTTGGGCATATTCTTGTGTCGGTATGTTTGTCTTCTTACATTATAAAAATGCCTAATCTTTTTGTGTTGTCAATTATTCTGTATTTCTTTTTTGTCATGTCATAGAGTTAATAATTCAACTTCATTTGTTCTGATTCAACAGATGTAAGGCTTATTACATAAACAACCTTACAAATTTATCCTAATTATAACTAGTTTTATGTTGCAAAAACCTTCAATTGAAAACTTATTAATAAAAAAACATATTTTACCACAAATATTCTCTAACCAAAGAAAACAATGCAAGATATTTGACATACTATATAATATTCTGAAATTAATAATTCTTCAAATTTTGCAGGTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGGTGGATGTATTTCCCAGGTAAAATTAGTGAAATATTTTAATCCGTTCTAAATTAAGCACTTTTTGAGAGTTCTGACGAACGACTGTACTGTATCTGATATATGATATATGTGTGCATGTGCAGGCAAAGTATAAGGTTAGAACAATTATAATTATGGTATTGTTCTTTACTGTAACTACTCCAAGTGGAATAGCTATTGGAATGATGATATCAAAAGGTTACAATGAGCAAAGCTCAACAGCACTTATTGTACAGGGAGTTCTTAATTCAGCATCAGCTGGGATTCTTATTTACATGGCACTCGTGGATCTACTTGCAACTGATTTTATGAACCCTAAATTATACACTAGTTTCAAACTCCAAATT</genome_strand>
        <mrna_strand>AATTATTTCTACTCCTCAAAATCACAACCCTAATCTACTTGTCAATCCTTGTACAACCAACCCTAACCTTTGCAAATTGTACATGTGAACCTCAAGACAACAAATATAATCATCAAACTAAACACAAAGCCTTATCCTACAAACTTATAGCCATATCTTCAATCCTTTGTTCAAGTGCACTTGGAGTCATCCTCCCAATCCTCTTAAAAAACTTCAAATCATTGCAAAAAAATGACTATTCACCCCTTCAATTCATGATAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGGGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGGTGGATGTATTTCCCAG..........................................................................................................GCAAAGTATAAGGTTAGAACAATTATAATTATGGTATTGTTCTTTACTGTAACTACTCCAAGTGGAATAGCTATTGGAATGATGATATCAAAAGGTTACAATGAGCAAAGCTCAACAGCACTTATTGTACAGGGAGTTCTTAATTCAGCATCAGCTGGGAATCTTATTTACATGGCACTCGTGGATCTACTTGCAACTGATTTTATGAACCCTAAATTATAC-CTAGTTTCAAACTCCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246207" ref_strand="+" ref_description="SGN-E246207 [cLEF-40-L10]">
      <seq>taaaggcgttcgcggcgggagtgatcttagccacagggtttatacacattctaccagatgcatttgagagcttgactagtccttgtcttagtgaagatttgtgggggagttttccatttgctgggtttgttgcaatgatgtctgctatatttactttgatgatggagtcatttgcaagtggctatcatagaagagctgaattgagaaaagctcagccagtcaatattggagatgaacaaggacaagatgagcatattgatcatggtccacaaattttgctagaaagatctgattcttcaagtcttatgagacatagattaatatcgcaggttttggaattgggaattttggttcattctgtgattattgggatttcccttggaactacagaaaatcccaaaacaattaaacctctaataatagctttgagttttcatcaattttttgaaggcatgggacttggtggatgtatttcccaggcaaagtataaggttagaacaattataattatggtattgttctttactgtaactactccaagtggaatagctattggaatgatgatatcaaaaggttacaatgagcaaagctcaacagcactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="13422" stop="11099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13122" g_stop="12794" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12793" i_stop="11779" i_length="1015">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11778" g_stop="11629" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="479" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11628" i_stop="11523" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11522" g_stop="11399" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="603" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E246207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13122" e_stop="12794"/>
          <exon e_start="11778" e_stop="11629"/>
          <exon e_start="11522" e_stop="11399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGGGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAGGTAAATATCTTTTGAGTGATCTGATAACTATATTGCTTGGATTTGTTAATAATATTATCGCACTCGTTATTCGTGGCATTAAAGGTTTTTGCTATCACAAATTAACTAGGGTTGTTTTATACGATAAGAACGTAATACTCTGTGAAAAAATACACAGTAAAAAATAGATTCTTACTGAAATTGTACAATGCTTCGTGATTTTTCTATATAAAAAAACATTTTTCTTTTCTCTTTGATTTATCAAATTATCTAGTGAAATATCTACCGAACATTTTTCATTGTCAAATTTTAATTAAAAGTAGTATTGTTTTTTGTAGTGGATGACATCTGAGGAACTGTACTTTCTTATGTTGATTTATTATGCTGTTCAAACTCTTTGAATATATTGTTAAGTTTTTATTAAATCCTTAAAAATATATTATTTTAAAAATCGAACGCACATTTATTCAGATTAATAATAATTTTATTTTAATACCAAAAAGGAAAAAAAGTACGATATAATTTTATATTGTACTTTTTTTTTTGGTAACTACACAATGAGATGAAAGAAAAAAATTAAAGTTTTTCCTTAATTTTCTTCGTCTAATTTTGCTTCTTTTTTTTTTATTATTGGTTTCTTTTCTAAAACAAAAATAGTTTGAGAGATTTCGAAAGAACAAAAATCATAGAATATGATTTGGGCATATTCTTGTGTCGGTATGTTTGTCTTCTTACATTATAAAAATGCCTAATCTTTTTGTGTTGTCAATTATTCTGTATTTCTTTTTTGTCATGTCATAGAGTTAATAATTCAACTTCATTTGTTCTGATTCAACAGATGTAAGGCTTATTACATAAACAACCTTACAAATTTATCCTAATTATAACTAGTTTTATGTTGCAAAAACCTTCAATTGAAAACTTATTAATAAAAAAACATATTTTACCACAAATATTCTCTAACCAAAGAAAACAATGCAAGATATTTGACATACTATATAATATTCTGAAATTAATAATTCTTCAAATTTTGCAGGTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGGTGGATGTATTTCCCAGGTAAAATTAGTGAAATATTTTAATCCGTTCTAAATTAAGCACTTTTTGAGAGTTCTGACGAACGACTGTACTGTATCTGATATATGATATATGTGTGCATGTGCAGGCAAAGTATAAGGTTAGAACAATTATAATTATGGTATTGTTCTTTACTGTAACTACTCCAAGTGGAATAGCTATTGGAATGATGATATCAAAAGGTTACAATGAGCAAAGCTCAACAGCACTTA</genome_strand>
        <mrna_strand>TAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGGGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGGTGGATGTATTTCCCAG..........................................................................................................GCAAAGTATAAGGTTAGAACAATTATAATTATGGTATTGTTCTTTACTGTAACTACTCCAAGTGGAATAGCTATTGGAATGATGATATCAAAAGGTTACAATGAGCAAAGCTCAACAGCACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539917" ref_strand="+" ref_description="SGN-E539917 [TUS-59-O19]">
      <seq>tttctctctcctaaaaacataacaaaaactaaacaataataatgagtcctcaattatttctactcctcaaaatcacaaccctaatctacttgtcaatccttgtacaaccaaccctaacctttgcaaattgtacatgtgaacctcaagacaacaaatataatcatcaaactaaacacaaagccttatcctacaaacttatagccatatcttcaatcctttgttcaagtgcacttggagtcatcctcccaatcctcttaaaaaacttcaaatcattgcaaaaaaatgactattcaccccttcaattcatgataaaggcgttcgcggcgggagtgatcttagccacagggtttatacacattctaccagatgcatttgagagcttgactagtccttgtcttagtgaagatttgtgggggagttttccatttgctgggtttgttgcaatgatgtctgctatatttactttgatgatggagtcatttgcaagtggctatcatagaagagctgaattgagaaaagctcagccagtcaatattggagatgaacaaggacaagatgagcatattgatcatggtccacaaattttgctagaaagatctgattcttcaagtcttatgagacatagattaatatcgcaggttttggaattgggaattttggttcattctgtgattattgggatttcccttggaactacagaaaatcccaaaacaattaaacctctaataatagctttgagttttcatcaattttttgaaggcatgggacttgntggatgtatttcccaggcaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="13732" stop="11322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13432" g_stop="12794" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12793" i_stop="11779" i_length="1015">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11778" g_stop="11629" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="788" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11628" i_stop="11523" i_length="106">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11522" g_stop="11516" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="795" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E539917" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13432" e_stop="12794"/>
          <exon e_start="11778" e_stop="11629"/>
          <exon e_start="11522" e_stop="11516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCCATAAAAACATAACAAAAACTAAACAATAATAATGAGTCCTCAATTATTTCTACTCCTCAAAATCACAACCCTAATCTACTTGTCAATCCTTGTACAACCAACCCTAACCTTTGCAAATTGTACATGTGAACCTCAAGACAACAAATATAATCATCAAACTAAACACAAAGCCTTATCCTACAAACTTATAGCCATATCTTCAATCCTTTGTTCAAGTGCACTTGGAGTCATCCTCCCAATCCTCTTAAAAAACTTCAAATCATTGCAAAAAAATGACTATTCACCCCTTCAATTCATGATAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGGGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAGGTAAATATCTTTTGAGTGATCTGATAACTATATTGCTTGGATTTGTTAATAATATTATCGCACTCGTTATTCGTGGCATTAAAGGTTTTTGCTATCACAAATTAACTAGGGTTGTTTTATACGATAAGAACGTAATACTCTGTGAAAAAATACACAGTAAAAAATAGATTCTTACTGAAATTGTACAATGCTTCGTGATTTTTCTATATAAAAAAACATTTTTCTTTTCTCTTTGATTTATCAAATTATCTAGTGAAATATCTACCGAACATTTTTCATTGTCAAATTTTAATTAAAAGTAGTATTGTTTTTTGTAGTGGATGACATCTGAGGAACTGTACTTTCTTATGTTGATTTATTATGCTGTTCAAACTCTTTGAATATATTGTTAAGTTTTTATTAAATCCTTAAAAATATATTATTTTAAAAATCGAACGCACATTTATTCAGATTAATAATAATTTTATTTTAATACCAAAAAGGAAAAAAAGTACGATATAATTTTATATTGTACTTTTTTTTTTGGTAACTACACAATGAGATGAAAGAAAAAAATTAAAGTTTTTCCTTAATTTTCTTCGTCTAATTTTGCTTCTTTTTTTTTTATTATTGGTTTCTTTTCTAAAACAAAAATAGTTTGAGAGATTTCGAAAGAACAAAAATCATAGAATATGATTTGGGCATATTCTTGTGTCGGTATGTTTGTCTTCTTACATTATAAAAATGCCTAATCTTTTTGTGTTGTCAATTATTCTGTATTTCTTTTTTGTCATGTCATAGAGTTAATAATTCAACTTCATTTGTTCTGATTCAACAGATGTAAGGCTTATTACATAAACAACCTTACAAATTTATCCTAATTATAACTAGTTTTATGTTGCAAAAACCTTCAATTGAAAACTTATTAATAAAAAAACATATTTTACCACAAATATTCTCTAACCAAAGAAAACAATGCAAGATATTTGACATACTATATAATATTCTGAAATTAATAATTCTTCAAATTTTGCAGGTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGGTGGATGTATTTCCCAGGTAAAATTAGTGAAATATTTTAATCCGTTCTAAATTAAGCACTTTTTGAGAGTTCTGACGAACGACTGTACTGTATCTGATATATGATATATGTGTGCATGTGCAGGCAAAGT</genome_strand>
        <mrna_strand>TTTCTCTCTCC-TAAAAACATAACAAAAACTAAACAATAATAATGAGTCCTCAATTATTTCTACTCCTCAAAATCACAACCCTAATCTACTTGTCAATCCTTGTACAACCAACCCTAACCTTTGCAAATTGTACATGTGAACCTCAAGACAACAAATATAATCATCAAACTAAACACAAAGCCTTATCCTACAAACTTATAGCCATATCTTCAATCCTTTGTTCAAGTGCACTTGGAGTCATCCTCCCAATCCTCTTAAAAAACTTCAAATCATTGCAAAAAAATGACTATTCACCCCTTCAATTCATGATAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGGGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGNTGGATGTATTTCCCAG..........................................................................................................GCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288164" ref_strand="+" ref_description="SGN-E288164 [cLES-7-H11]">
      <seq>ttctctctccataaaaacatagcgaaactaaacaataataatgagtcctcaattatttctactcctcaaaatcacaaccctaatctacttgtcaatccttgtacaaccaaccctaacctttgcaaattgtacatgtgaacctcaagacaacaaatataatcatcaaactaaacacaaagccttatcctacaaacttatagccatatcttcaatcctttgttcaagtgcacttggagtcatcctcccaatcctcttaaaaaacttcaaatcattgcaaaaaaatgactattcaccccttcaattcatgataaaggcgttcgcggcgggagtgatcttagccacagggtttatacacattctaccagatgcatttgagagcttgactagtccttgtcttagtgaagatttgtggnggagttttccatttgctgggtttgttgcaatgatgtctgctatatttactttgatgatggagtcatttgcaagtggctatcatagaagagctgaattgagaaaagctcagccagtcaatattggagatgaacaaggacaagatgagcatattgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="13731" stop="12560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13431" g_stop="12860" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E288164" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13431" e_stop="12860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCCATAAAAACATAACAAAAACTAAACAATAATAATGAGTCCTCAATTATTTCTACTCCTCAAAATCACAACCCTAATCTACTTGTCAATCCTTGTACAACCAACCCTAACCTTTGCAAATTGTACATGTGAACCTCAAGACAACAAATATAATCATCAAACTAAACACAAAGCCTTATCCTACAAACTTATAGCCATATCTTCAATCCTTTGTTCAAGTGCACTTGGAGTCATCCTCCCAATCCTCTTAAAAAACTTCAAATCATTGCAAAAAAATGACTATTCACCCCTTCAATTCATGATAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGGGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCAT</genome_strand>
        <mrna_strand>TTCTCTCTCCATAAAAACATAGC-GAAACTAAACAATAATAATGAGTCCTCAATTATTTCTACTCCTCAAAATCACAACCCTAATCTACTTGTCAATCCTTGTACAACCAACCCTAACCTTTGCAAATTGTACATGTGAACCTCAAGACAACAAATATAATCATCAAACTAAACACAAAGCCTTATCCTACAAACTTATAGCCATATCTTCAATCCTTTGTTCAAGTGCACTTGGAGTCATCCTCCCAATCCTCTTAAAAAACTTCAAATCATTGCAAAAAAATGACTATTCACCCCTTCAATTCATGATAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGNGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541466" ref_strand="+" ref_description="SGN-E541466 [TUS-62-E10](-)">
      <seq>tactgacggtagagtagataatggagcaccagttgagcaaaccaaacttgaagaaaacaaggaggacaattcatcaagaaaacttgcagataagatgatgttgcttgatataaaggagggtgatgtggaaacctctatcacagaggacagtgcagaagaaaatccattgtgtatgttatttaatgatgaaaatagtcccttgctgcaagtgaaggagcgtggagagcaatctggaccaactgcagaaggaggaattgattacagtgtccagccaactggtgttatagatgctgcatcagaaagttctttacccgatgataacaatggcatctcgaggaaggactctgttggttctgatgatgattggacattagttgagatggagtgtcaagggaaagaaacagaagtagccgagagagtcagctggggaaggtggttcatgggtaaaactggaaaatcatttggttttaaagacgaggtgaccgatgaagcaccatcaaagaggaccaaggctgatccatgaatacgtatccgtttgattagctgctagccagcagtaggtggtgcacaataatgctctttattttctaggttaataatttctgttgcttgtcttagaacttgatagctcatctttaaatatggttccgtcgtgttgactatatgtgcctgccttctttaatctcatgatgtttatattttgctcacaacaacttctgatacattattgtccatctaacatgtgtttaaaagacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="20867" stop="19425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20567" g_stop="20136" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20135" i_stop="20053" i_length="83">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20052" g_stop="19720" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="765" r_length="333" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E541466" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20567" e_stop="20136"/>
          <exon e_start="20052" e_stop="19720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGACGGTAGAGTAGATAATGGAGGACCAGTTGAGCAAACCAAACCTGAAGAAAACAAGGAGGACAATTCATCAAGAAAACTTGCAGATAAGATGATGTTGCTTGATATAAAGGAGGGTGATGTGGAAACCTCTATCACAGAGGACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGTCCCTTGCTGCAAGTGAAGGAGCGTGGAGAGCAATCTGGACCAACTGCAGAAGGAGGAATTGATTACAGTGTCCAGCCAACTGGTGTTATAGATGCTGCATCAGAAAGTTCTTTACCCGATGATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGAAAGAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAGGTATCGATATCACACATTGTAATTTTCTTTAATCCTTTTCTCTTGGTTTGTTATAACAACTCTTTGTTCATGTTTTTATATAGGTGGTTCATGGGTAAAACTGGAAAATCATTTGGTTTTAAAGACGAGGTGACCGATGAAGCACCATCAAAGAGGACCAAGGCTGATCCATGAATACGTATCCGTTTGATTAGCTGCTAGCCAGCAGTAGGTGGTGCACAATAATGCTCTTTATTTTCTAGGTTAATAATTTCTGTTGCTTGTCTTAGAACTTGATAGCTCATCTTTAAATATGGTTCCGTCGTGTTGACTATATGTGCCTGCCTTCTTTAATCTCATGATGTTTATATTTTGCTCACAACAACTTCTGATACATTATTGTCCATCTAACATGTGTTTAAAAGACAATAACTGCC</genome_strand>
        <mrna_strand>TACTGACGGTAGAGTAGATAATGGAGCACCAGTTGAGCAAACCAAACTTGAAGAAAACAAGGAGGACAATTCATCAAGAAAACTTGCAGATAAGATGATGTTGCTTGATATAAAGGAGGGTGATGTGGAAACCTCTATCACAGAGGACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGTCCCTTGCTGCAAGTGAAGGAGCGTGGAGAGCAATCTGGACCAACTGCAGAAGGAGGAATTGATTACAGTGTCCAGCCAACTGGTGTTATAGATGCTGCATCAGAAAGTTCTTTACCCGATGATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGAAAGAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAG...................................................................................GTGGTTCATGGGTAAAACTGGAAAATCATTTGGTTTTAAAGACGAGGTGACCGATGAAGCACCATCAAAGAGGACCAAGGCTGATCCATGAATACGTATCCGTTTGATTAGCTGCTAGCCAGCAGTAGGTGGTGCACAATAATGCTCTTTATTTTCTAGGTTAATAATTTCTGTTGCTTGTCTTAGAACTTGATAGCTCATCTTTAAATATGGTTCCGTCGTGTTGACTATATGTGCCTGCCTTCTTTAATCTCATGATGTTTATATTTTGCTCACAACAACTTCTGATACATTATTGTCCATCTAACATGTGTTTAAAAGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236994" ref_strand="+" ref_description="SGN-E236994 [cLEL-7-L5](-)">
      <seq>gtgtatagatgctgcatcagaaagttctttacccgaatataacaatggcatctcgaggaaggactctgttggttctgatgatgattggacattagttgagatggagtgtcaagggaaagaaacagaagtagccgagagagtcagctggggaaggtggttcatgggtaaaactggaaaatcatttggttttaaagacgaggtgaccgatgaagcaccatcaaagaggaccaaggctgatccatgaatacgtatccgtttgattagctgctagccagcagtaggtggtgcacaataatgctctttattttctaggttaataatttctgttgcttgtcttagaacttgatagctcatctttaaatatggttccgtcgtgttgactatatgtgcctgccttctttaatctcatgatgtttatattttgctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="20589" stop="19472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20289" g_stop="20136" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20135" i_stop="20053" i_length="83">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20052" g_stop="19760" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="446" r_length="293" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E236994" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20289" e_stop="20136"/>
          <exon e_start="20052" e_stop="19760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTATAGATGCTGCATCAGAAAGTTCTTTACCCGATGATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGAAAGAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAGGTATCGATATCACACATTGTAATTTTCTTTAATCCTTTTCTCTTGGTTTGTTATAACAACTCTTTGTTCATGTTTTTATATAGGTGGTTCATGGGTAAAACTGGAAAATCATTTGGTTTTAAAGACGAGGTGACCGATGAAGCACCATCAAAGAGGACCAAGGCTGATCCATGAATACGTATCCGTTTGATTAGCTGCTAGCCAGCAGTAGGTGGTGCACAATAATGCTCTTTATTTTCTAGGTTAATAATTTCTGTTGCTTGTCTTAGAACTTGATAGCTCATCTTTAAATATGGTTCCGTCGTGTTGACTATATGTGCCTGCCTTCTTTAATCTCATGATGTTTATATTTTGCTCACAACAACTTCTGATACAT</genome_strand>
        <mrna_strand>GTGT-ATAGATGCTGCATCAGAAAGTTCTTTACCCGAATATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGAAAGAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAG...................................................................................GTGGTTCATGGGTAAAACTGGAAAATCATTTGGTTTTAAAGACGAGGTGACCGATGAAGCACCATCAAAGAGGACCAAGGCTGATCCATGAATACGTATCCGTTTGATTAGCTGCTAGCCAGCAGTAGGTGGTGCACAATAATGCTCTTTATTTTCTAGGTTAATAATTTCTGTTGCTTGTCTTAGAACTTGATAGCTCATCTTTAAATATGGTTCCGTCGTGTTGACTATATGTGCCTGCCTTCTTTAATCTCATGATGTTTATATTTTGCTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298095" ref_strand="-" ref_description="SGN-E298095 [cLEW-12-O9]">
      <seq>acagtgcagaagaaaatccattgtgtatgttatttaatgatgaaaatagtcccttgctgcaagtgaaggagcgtggagagcaatctggaccaactgcagaaggaggaattgattacagtgtccagccaactggtgttatagatgctgcatcagaaagttctttacccgatgataacaatggcatctcgaggaaggactctgttggttctgatgatgattggacattagttgagatggagtgtcaagggaaagaaacagaagtagccgagagagtcagctggggaaggtggttcatgggtaaaactggaaaatcatttggttttaaagacgaggtgaccgatgaagcaccatcaaagaggaccaaggctgatccatgaatacgtatccgtttgattagctgctagccagcagtaggtggtgcacaataatgctctttattttctaggttaatcaaaaaagaagatagtcttagtaacttgatagctcatctttaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="20721" stop="19541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20421" g_stop="20136" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20135" i_stop="20053" i_length="83">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20052" g_stop="19841" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="499" r_length="213" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E298095" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298095" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20421" e_stop="20136"/>
          <exon e_start="20052" e_stop="19841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGTCCCTTGCTGCAAGTGAAGGAGCGTGGAGAGCAATCTGGACCAACTGCAGAAGGAGGAATTGATTACAGTGTCCAGCCAACTGGTGTTATAGATGCTGCATCAGAAAGTTCTTTACCCGATGATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGAAAGAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAGGTATCGATATCACACATTGTAATTTTCTTTAATCCTTTTCTCTTGGTTTGTTATAACAACTCTTTGTTCATGTTTTTATATAGGTGGTTCATGGGTAAAACTGGAAAATCATTTGGTTTTAAAGACGAGGTGACCGATGAAGCACCATCAAAGAGGACCAAGGCTGATCCATGAATACGTATCCGTTTGATTAGCTGCTAGCCAGCAGTAGGTGGTGCACAATAATGCTCTTTATTTTCTAGGTTAATAATTTCTGTTGCTTGTCTTAG-AACTTGATAGCTCATCTTTAAATATG</genome_strand>
        <mrna_strand>ACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGTCCCTTGCTGCAAGTGAAGGAGCGTGGAGAGCAATCTGGACCAACTGCAGAAGGAGGAATTGATTACAGTGTCCAGCCAACTGGTGTTATAGATGCTGCATCAGAAAGTTCTTTACCCGATGATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGAAAGAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAG...................................................................................GTGGTTCATGGGTAAAACTGGAAAATCATTTGGTTTTAAAGACGAGGTGACCGATGAAGCACCATCAAAGAGGACCAAGGCTGATCCATGAATACGTATCCGTTTGATTAGCTGCTAGCCAGCAGTAGGTGGTGCACAATAATGCTCTTTATTTTCTAGGTTAATCAAAAAAGAAGATAGTCTTAGTAACTTGATAGCTCATCTTTAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354180" ref_strand="+" ref_description="SGN-E354180 [cTOS-16-G7]">
      <seq>ttatttgtcagaagaattactccgtgatgcaaaaactcctactgacggtagagtagataatggaggaccagttgagcaaaccaaacctgaagaaaacaaggaggacaattcatcaagaaaacttgcagataagatgatgttgcttgatataaaggagggtgatgtggaaacctctatcacagaggacagtgcagaagaaaatccattgtgtatgttatttaatgatgaaaatagtcccttgctgcaagtgaaggagcgtggagagcaatctggaccaactgcagaaggaggaattgattacagtgtccagccaactggtgttatagatgctgcatcagaaagttctttacccgatgataacaatggcatctcgaggaaggactctgttggttctgatgatgattggacattagttgagatggagtgtcaaggggaaaaaacagaagtagccgagagagtcagctggggaaggtggttcatgggtaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="20906" stop="19733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20606" g_stop="20136" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20135" i_stop="20053" i_length="83">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20052" g_stop="20033" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="491" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E354180" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20606" e_stop="20136"/>
          <exon e_start="20052" e_stop="20033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTCCTACTGACGGTAGAGTAGATAATGGAGGACCAGTTGAGCAAACCAAACCTGAAGAAAACAAGGAGGACAATTCATCAAGAAAACTTGCAGATAAGATGATGTTGCTTGATATAAAGGAGGGTGATGTGGAAACCTCTATCACAGAGGACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGTCCCTTGCTGCAAGTGAAGGAGCGTGGAGAGCAATCTGGACCAACTGCAGAAGGAGGAATTGATTACAGTGTCCAGCCAACTGGTGTTATAGATGCTGCATCAGAAAGTTCTTTACCCGATGATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGAAAGAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAGGTATCGATATCACACATTGTAATTTTCTTTAATCCTTTTCTCTTGGTTTGTTATAACAACTCTTTGTTCATGTTTTTATATAGGTGGTTCATGGGTAAAACTG</genome_strand>
        <mrna_strand>TTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTCCTACTGACGGTAGAGTAGATAATGGAGGACCAGTTGAGCAAACCAAACCTGAAGAAAACAAGGAGGACAATTCATCAAGAAAACTTGCAGATAAGATGATGTTGCTTGATATAAAGGAGGGTGATGTGGAAACCTCTATCACAGAGGACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGTCCCTTGCTGCAAGTGAAGGAGCGTGGAGAGCAATCTGGACCAACTGCAGAAGGAGGAATTGATTACAGTGTCCAGCCAACTGGTGTTATAGATGCTGCATCAGAAAGTTCTTTACCCGATGATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGGAAAAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAG...................................................................................GTGGTTCATGGGTAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273543" ref_strand="+" ref_description="SGN-E273543 [cLEN-6-D5]">
      <seq>caatgtgtagattggttaaaaaagactttgaggcaggtgaatactgcggcgaagtctaaacctaactggtgcccacttgttgttggctgcattttcggggagtctggggagatagaggttctttcacgttccagaatgtttgaagttgcatatgtaaacaatgctttaaccgacctgcttgaacaggggaattttgtaaaagcagaaaggtttgcagctcaacagtcaactttacctaagcaatttcagatgctgtctttgggaacacgtggcagtgcaaatactgcaaatgctgtatcattttctgagttagccaaaattaggtcgatggatgataattcttatttgtcagaagaattactccgtgatgcaaaaacttctactgacggtagagtatataatggaggaccagttgagcaaaccaaacctgaagaaaacaatgaggacaattcatcaagaaaacttgcagataagatgatgttgcttgatataaaggagggtgatgtggaaacctctatcacagaggacagtgcagaagaaaatccattgtgtatgttatttaatgatgaaaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="21247" stop="20072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20947" g_stop="20372" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E273543" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20947" e_stop="20372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTGTAGATTGGTTAAAAAAGACTTTGAGGCAGGTAAATACTGCGGCGAAGTCTAAACCTAACTGGTGCCCACTTGTTGTTGGCTGCATTTTCGGGGAGTCTGGGGAGATAGAGGTTCTTTCACGTTCCAGAATGTTTGAAGTTGCATATGTAAACAATGCTTTAACCGACCTGCTTGAACAGGGGAATTTTGTAAAAGCAGAAAGGTTTGCAGCTCAACAGTCAACTTTACCTAAGCAATTTCAGATGCTGTCTTTGGGAACACGTGGCAGTGCAAATACTGCAAATGCTGTATCATTTTCTGAGTTAGCCAAAATTAGGTCGATGGATGATAATTCTTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTCCTACTGACGGTAGAGTAGATAATGGAGGACCAGTTGAGCAAACCAAACCTGAAGAAAACAAGGAGGACAATTCATCAAGAAAACTTGCAGATAAGATGATGTTGCTTGATATAAAGGAGGGTGATGTGGAAACCTCTATCACAGAGGACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGT</genome_strand>
        <mrna_strand>CAATGTGTAGATTGGTTAAAAAAGACTTTGAGGCAGGTGAATACTGCGGCGAAGTCTAAACCTAACTGGTGCCCACTTGTTGTTGGCTGCATTTTCGGGGAGTCTGGGGAGATAGAGGTTCTTTCACGTTCCAGAATGTTTGAAGTTGCATATGTAAACAATGCTTTAACCGACCTGCTTGAACAGGGGAATTTTGTAAAAGCAGAAAGGTTTGCAGCTCAACAGTCAACTTTACCTAAGCAATTTCAGATGCTGTCTTTGGGAACACGTGGCAGTGCAAATACTGCAAATGCTGTATCATTTTCTGAGTTAGCCAAAATTAGGTCGATGGATGATAATTCTTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTTCTACTGACGGTAGAGTATATAATGGAGGACCAGTTGAGCAAACCAAACCTGAAGAAAACAATGAGGACAATTCATCAAGAAAACTTGCAGATAAGATGATGTTGCTTGATATAAAGGAGGGTGATGTGGAAACCTCTATCACAGAGGACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243789" ref_strand="+" ref_description="SGN-E243789 [cLED-35-L7]">
      <seq>ttctggataccacagctgtttttacggacacaggaattgaatttctttgcaccaaggaaagtttcttcaggcttcgtacaattggaatttgtatgacaaagattgcaaagctaactgtttctgtccaactgaagaaacgaggagaacaatgtgtagattggttaaaaaagactttgaggcaggtaaatactgcggcgaagtctaaacctaactggtgcccacttgttgttggctgcattttcggggagtctggggagatagaggttctttcacgttccagaatgtttgaagttgcatatgtaaacaatgctttaaccgacctgcttgaacaggggaattttgtaaaagcagaaaggtttgcagctcaacagtcaactttacctaagcaatttcagatgctgtctttgggaacacgtggcagtgcaaatactgcaaatgctgtatcattttctgagttagccaaaattaggtcgatggatgataattcttatttgtcagaagaattactccgtgatgcaaaaactcctactgacggtagagtagataatggaggaccagttgagcaaaccaaacctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="21393" stop="20215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21093" g_stop="20515" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E243789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21093" e_stop="20515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGATACCACAGCTGTTTTTACGGACACAGGAATTGAATTTCTTTGCACCAAGGAAAGTTTCTTCAGGCTTCGTACAATTGGAATTTGTATGACAAAGATTGCAAAGCTAACTGTTTCTGTCCAACTGAAGAAACGAGGAGAACAATGTGTAGATTGGTTAAAAAAGACTTTGAGGCAGGTAAATACTGCGGCGAAGTCTAAACCTAACTGGTGCCCACTTGTTGTTGGCTGCATTTTCGGGGAGTCTGGGGAGATAGAGGTTCTTTCACGTTCCAGAATGTTTGAAGTTGCATATGTAAACAATGCTTTAACCGACCTGCTTGAACAGGGGAATTTTGTAAAAGCAGAAAGGTTTGCAGCTCAACAGTCAACTTTACCTAAGCAATTTCAGATGCTGTCTTTGGGAACACGTGGCAGTGCAAATACTGCAAATGCTGTATCATTTTCTGAGTTAGCCAAAATTAGGTCGATGGATGATAATTCTTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTCCTACTGACGGTAGAGTAGATAATGGAGGACCAGTTGAGCAAACCAAACCTGAAG</genome_strand>
        <mrna_strand>TTCTGGATACCACAGCTGTTTTTACGGACACAGGAATTGAATTTCTTTGCACCAAGGAAAGTTTCTTCAGGCTTCGTACAATTGGAATTTGTATGACAAAGATTGCAAAGCTAACTGTTTCTGTCCAACTGAAGAAACGAGGAGAACAATGTGTAGATTGGTTAAAAAAGACTTTGAGGCAGGTAAATACTGCGGCGAAGTCTAAACCTAACTGGTGCCCACTTGTTGTTGGCTGCATTTTCGGGGAGTCTGGGGAGATAGAGGTTCTTTCACGTTCCAGAATGTTTGAAGTTGCATATGTAAACAATGCTTTAACCGACCTGCTTGAACAGGGGAATTTTGTAAAAGCAGAAAGGTTTGCAGCTCAACAGTCAACTTTACCTAAGCAATTTCAGATGCTGTCTTTGGGAACACGTGGCAGTGCAAATACTGCAAATGCTGTATCATTTTCTGAGTTAGCCAAAATTAGGTCGATGGATGATAATTCTTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTCCTACTGACGGTAGAGTAGATAATGGAGGACCAGTTGAGCAAACCAAACCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321211" ref_strand="+" ref_description="SGN-E321211 [cTOB-13-L2]">
      <seq>aaaagccgatgttttggtgattacttctccatcagtggcaccagttgaagattggtctcgtagcttcttagtgtggttgctggatggtgagtttctggataccacagctgtttttacggacacaggaattgaatttctttgcaccaaggaaagtttcttcaggcttcgtacaattggaatttgtatgacaaagattgcaaagctaactgtttctgtccaactgaagaaacgaggagaacaatgtgtagattggttaaaaaagactttgaggcaggtaaatactgcggcgaagtctaaacctaactggtgcccacttgttgttggctgcattttcggggagtctggggagatagaggttctttcacgttccagaatgtttgaagttgcatatgtaaacaatgctttaaccgacctgcttgaacaggggaattttgtaaaagcagaaaggtttgcagctcaacagtcaactttacctaagcaatttcagatgctgtctttgggaacacgtggcagtgcaaatactgcaaatgctgtatcattttctgagttagccaaaattaggtcgatggatgataattcttatttgtcagaagaattactccgtgatgcaaaaactcctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="21485" stop="20263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21185" g_stop="20563" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E321211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21185" e_stop="20563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCGATGTTTTGGTGATTACTTCTCCATCAGTGGCACCAGTTGAAGATTGGTCTCGTAGCTTCTTAGTGTGGTTGCTGGATGGTGAGTTTCTGGATACCACAGCTGTTTTTACGGACACAGGAATTGAATTTCTTTGCACCAAGGAAAGTTTCTTCAGGCTTCGTACAATTGGAATTTGTATGACAAAGATTGCAAAGCTAACTGTTTCTGTCCAACTGAAGAAACGAGGAGAACAATGTGTAGATTGGTTAAAAAAGACTTTGAGGCAGGTAAATACTGCGGCGAAGTCTAAACCTAACTGGTGCCCACTTGTTGTTGGCTGCATTTTCGGGGAGTCTGGGGAGATAGAGGTTCTTTCACGTTCCAGAATGTTTGAAGTTGCATATGTAAACAATGCTTTAACCGACCTGCTTGAACAGGGGAATTTTGTAAAAGCAGAAAGGTTTGCAGCTCAACAGTCAACTTTACCTAAGCAATTTCAGATGCTGTCTTTGGGAACACGTGGCAGTGCAAATACTGCAAATGCTGTATCATTTTCTGAGTTAGCCAAAATTAGGTCGATGGATGATAATTCTTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTCCTACTG</genome_strand>
        <mrna_strand>AAAAGCCGATGTTTTGGTGATTACTTCTCCATCAGTGGCACCAGTTGAAGATTGGTCTCGTAGCTTCTTAGTGTGGTTGCTGGATGGTGAGTTTCTGGATACCACAGCTGTTTTTACGGACACAGGAATTGAATTTCTTTGCACCAAGGAAAGTTTCTTCAGGCTTCGTACAATTGGAATTTGTATGACAAAGATTGCAAAGCTAACTGTTTCTGTCCAACTGAAGAAACGAGGAGAACAATGTGTAGATTGGTTAAAAAAGACTTTGAGGCAGGTAAATACTGCGGCGAAGTCTAAACCTAACTGGTGCCCACTTGTTGTTGGCTGCATTTTCGGGGAGTCTGGGGAGATAGAGGTTCTTTCACGTTCCAGAATGTTTGAAGTTGCATATGTAAACAATGCTTTAACCGACCTGCTTGAACAGGGGAATTTTGTAAAAGCAGAAAGGTTTGCAGCTCAACAGTCAACTTTACCTAAGCAATTTCAGATGCTGTCTTTGGGAACACGTGGCAGTGCAAATACTGCAAATGCTGTATCATTTTCTGAGTTAGCCAAAATTAGGTCGATGGATGATAATTCTTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTCCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692388" ref_strand="+" ref_description="SGN-E692388 [LH_Ea08J10]">
      <seq>taatcgtgccgaattcggcacgaggaaattttagccttgcctatttgttaacttccaagttccaagttgcagcttatacagagactctctataatttgatgatgtcaatcttcaatcaatttccatagaagacccaaaaacctattcggtctccatcttcgtcttcttcttctccaactaaacgataaaaaccccatcactgtgtaattttttcccaattccggaacaatcaacaacatgatgaaagagctttttcagaaaaggcttacttccttttacgatagtttcattttcaacaagaaagattcatgggggaactctgatgctgttgtaatccattcacagcaacaagaaaatccgaattctctgtcatcccagttctatttatggcttatgggtgaaaagcatgatgatacgacagcaatctttactccttttgggatattctttttctgtacccagaaaaattattccaagattcgatctttgtgttgttctgctactctgatgagtaaacagcctgtttctgttcaattgaaggccaaaaacgatgagggttttgcgttcatcgactccacgatacgtgaagccagggtaattcgtaacagcaaggggtttactggtgtttttggtgatgattgtaattggccttttgttgtgggttatatagaaggtgagtaccctaagtctaagtttttttggaattgtatgaatgatctagaacccaaaaagtataaagtaattactgtgaattctggtattaataagatgattactgctggtgataaactaatttgtggacaagaattagaatttttgcaatcactacttactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="22937" stop="21540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22653" g_stop="21840" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="839" r_length="815" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E692388" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22653" e_stop="21840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTTAGCCTTAT-TATTTGTTAACTTCCAAGTTCCAAGTTGCAGCTTATACAAAGACTCTCTATAATTTGATGATGTCAATCTTCACACAATTTCTATAGAAGACCCAAAAACCTATTCGGTCTCCTTCTTCGTCTTCTTCTTCTCCAACAAAACCATAAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAATCAACAACATGAAGAAAGAGCTTTTCGGGAAAAGGCTTACTGCCTTTTACAATAGTTTGATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAACATGATGATACGACAGTAATCTTTACTCCTATTGGGATATTCTTTTTCTGTACACAGAAAAATTATTCCAAGATTCGATCTTTGAGTTGTTGTGCTACTGTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTCAAGCCAGGGTAATTCGTAACAGCAAGGGGTTTACTGGTGTTTTTGATGATGATTGTAATTGGCCGTTTGTTGTGGGTTATATAGAAGGTGAGTACCCTAAGTCTAAGTTTTTTTGGAATTGTATGAATGATTTAGAACCCAAAAAGTATAAAGTAATTACTGTGGATTCTGGTATTAATAAGATGATTCATGCTGCTGATAAACCAATTTCTGGACGAGAATTAGAATTTTTGCAATCACTATTTACTACTTT</genome_strand>
        <mrna_strand>GAAATTTTAGCCTTGCCTATTTGTTAACTTCCAAGTTCCAAGTTGCAGCTTATACAGAGACTCTCTATAATTTGATGATGTCAATCTTCAATCAATTTCCATAGAAGACCCAAAAACCTATTCGGTCTCCATCTTCGTCTTCTTCTTCTCCAACTAAACGATAAAAACCCCATCACTGTGTAATTTTTTCCCAATTCCGGAACAATCAACAACATGATGAAAGAGCTTTTTCAGAAAAGGCTTACTTCCTTTTACGATAGTTTCATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAGCATGATGATACGACAGCAATCTTTACTCCTTTTGGGATATTCTTTTTCTGTACCCAGAAAAATTATTCCAAGATTCGATCTTTGTGTTGTTCTGCTACTCTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTGAAGCCAGGGTAATTCGTAACAGCAAGGGGTTTACTGGTGTTTTTGGTGATGATTGTAATTGGCCTTTTGTTGTGGGTTATATAGAAGGTGAGTACCCTAAGTCTAAGTTTTTTTGGAATTGTATGAATGATCTAGAACCCAAAAAGTATAAAGTAATTACTGTGAATTCTGGTATTAATAAGATGATTACTGCTGGTGATAAACTAATTTGTGGACAAGAATTAGAATTTTTGCAATCACTACTTACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693226" ref_strand="+" ref_description="SGN-E693226 [LH_Ea10M08]">
      <seq>ttctcgtgccgaattcggcacgaggaaattttagccttgttatttgttaacttccaagttccaagttgcagcttatacagagactctctataatttgatgatgtcaatcttcaatcaatttccatagaagacccaaaaacctattcggtctccatcttcgtcttcttcttctccaactaaacgataaaaaccccatcactgtgtaattttttcccaattccggaacaatcaacaacatgatgaaagagctttttcagaaaaggcttacttccttttacgatagtttcattttcaacaagaaagattcatgggggaactctgatgctgttgtaatccattcacagcaacaagaaaatccgaattctctgtcatcccagttctatttatggcttatgggtgaaaagcatgatgatacgacagcaatctttactccttttgggatattctttttctgtacccagaaaaattattccaagattcgatctttgtgttgttctgctactctgatgagtaaacagcctgtttctgttcaattgaaggccaaaaacgatgagggttttgcgttcatcgactccacgatacgtgaagccagggtaattcgtaacagcaaggggtttactggtgtttttggtgatgattgtaattggccttttgttgtgggttatatagaaggtgagtaccctaagtctaagtttttttggaattgtatgaatgatctagaacccaaaaagtataaagtaattactgtgaattctggtattaataagatgattactgctggtgataaactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="22953" stop="21585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22653" g_stop="21885" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="793" r_length="769" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E693226" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22653" e_stop="21885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTTAGCCTTATTATTTGTTAACTTCCAAGTTCCAAGTTGCAGCTTATACAAAGACTCTCTATAATTTGATGATGTCAATCTTCACACAATTTCTATAGAAGACCCAAAAACCTATTCGGTCTCCTTCTTCGTCTTCTTCTTCTCCAACAAAACCATAAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAATCAACAACATGAAGAAAGAGCTTTTCGGGAAAAGGCTTACTGCCTTTTACAATAGTTTGATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAACATGATGATACGACAGTAATCTTTACTCCTATTGGGATATTCTTTTTCTGTACACAGAAAAATTATTCCAAGATTCGATCTTTGAGTTGTTGTGCTACTGTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTCAAGCCAGGGTAATTCGTAACAGCAAGGGGTTTACTGGTGTTTTTGATGATGATTGTAATTGGCCGTTTGTTGTGGGTTATATAGAAGGTGAGTACCCTAAGTCTAAGTTTTTTTGGAATTGTATGAATGATTTAGAACCCAAAAAGTATAAAGTAATTACTGTGGATTCTGGTATTAATAAGATGATTCATGCTGCTGATAAACCAAT</genome_strand>
        <mrna_strand>GAAATTTTAGCCTTGTTATTTGTTAACTTCCAAGTTCCAAGTTGCAGCTTATACAGAGACTCTCTATAATTTGATGATGTCAATCTTCAATCAATTTCCATAGAAGACCCAAAAACCTATTCGGTCTCCATCTTCGTCTTCTTCTTCTCCAACTAAACGATAAAAACCCCATCACTGTGTAATTTTTTCCCAATTCCGGAACAATCAACAACATGATGAAAGAGCTTTTTCAGAAAAGGCTTACTTCCTTTTACGATAGTTTCATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAGCATGATGATACGACAGCAATCTTTACTCCTTTTGGGATATTCTTTTTCTGTACCCAGAAAAATTATTCCAAGATTCGATCTTTGTGTTGTTCTGCTACTCTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTGAAGCCAGGGTAATTCGTAACAGCAAGGGGTTTACTGGTGTTTTTGGTGATGATTGTAATTGGCCTTTTGTTGTGGGTTATATAGAAGGTGAGTACCCTAAGTCTAAGTTTTTTTGGAATTGTATGAATGATCTAGAACCCAAAAAGTATAAAGTAATTACTGTGAATTCTGGTATTAATAAGATGATTACTGCTGGTGATAAACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314392" ref_strand="+" ref_description="SGN-E314392 [cTOA-21-K14]">
      <seq>aaaaaccccatcaccgtgcaattttttcccaattctgaaacaatcaacaacatgaagaaagagcttttcgggaaaaggcttactgccttttacaatagtttgattttcaacaagaaagattcatgggggaactctgatgctgttgtaatccattcacagcaacaagaaaatccgaattctctgtcatcccagttctatttatggcttatgggtgaaaaacatgatgatacgacagtaatctttactcctattgggatattctttttctgtacacagaaaaattattccaagattcgatctttgagttgttgtgctactgtgatgagtaaacagcctgtttctgttcaattgaaggccaaaaacgatgagggttttgcgttcatcgactccacgatacgtcaagccagggtaattcgtaacagcaaggggtttactggtgtttttgatgatgattgtaattggccgtttgttgtgggttatatagaaggtgagtaccctaagtctaagtttttttgggaatgtatgaatgatttagaacccaaaaagtataaagtaattactgtgggattctggtattaataagatgattcatgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="22792" stop="21595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22492" g_stop="21895" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E314392" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22492" e_stop="21895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAATCAACAACATGAAGAAAGAGCTTTTCGGGAAAAGGCTTACTGCCTTTTACAATAGTTTGATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAACATGATGATACGACAGTAATCTTTACTCCTATTGGGATATTCTTTTTCTGTACACAGAAAAATTATTCCAAGATTCGATCTTTGAGTTGTTGTGCTACTGTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTCAAGCCAGGGTAATTCGTAACAGCAAGGGGTTTACTGGTGTTTTTGATGATGATTGTAATTGGCCGTTTGTTGTGGGTTATATAGAAGGTGAGTACCCTAAGTCTAAGTTTTTTTGGAATTGTATGAATGATTTAGAACCCAAAAAGTATAAAGTAATTACTGT-GGATTCTGGTATTAATAAGATGATTCATGCTGCTG</genome_strand>
        <mrna_strand>AAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAATCAACAACATGAAGAAAGAGCTTTTCGGGAAAAGGCTTACTGCCTTTTACAATAGTTTGATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAACATGATGATACGACAGTAATCTTTACTCCTATTGGGATATTCTTTTTCTGTACACAGAAAAATTATTCCAAGATTCGATCTTTGAGTTGTTGTGCTACTGTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTCAAGCCAGGGTAATTCGTAACAGCAAGGGGTTTACTGGTGTTTTTGATGATGATTGTAATTGGCCGTTTGTTGTGGGTTATATAGAAGGTGAGTACCCTAAGTCTAAGTTTTTTTGGGAATGTATGAATGATTTAGAACCCAAAAAGTATAAAGTAATTACTGTGGGATTCTGGTATTAATAAGATGATTCATGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541468" ref_strand="+" ref_description="SGN-E541468 [TUS-62-E10]">
      <seq>ccaagttgcagcttatacaaagactctctataatttgatgatgtcaatcttcacacaatttctatagaagacccaaaaacctattcggtctccttcttcgtcttcttcttctccaacaaaaccataaaaaccccatcaccgtgcaattttttcccaattctgaaacaatcaacaacatgaagaaagagcttttcgggaaaaggcttactgccttttacaatagtttgattttcaacaagaaagattcatgggggaactctgatgctgttgtaatccattcacagcaacaagaaaatccgaattctctgtcatcccagttctatttatggcttatgggtgaaaaacatgatgatacgacagtaatctttactcctattgggatattctttttctgtacacagaaaaattattccaagattcgatctttgagttgttgtgctactgtgatgagtaaacagcctgtttctgttcaattgaaggccaaaaacgatgagggttttgcgttcatcgactccacgatacgtcaagccaggggtattcgtaacagcaaggggtttactggggtttttgaagatgattggaattgggcgtttgttgtggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="22917" stop="21717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22617" g_stop="22015" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E541468" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22617" e_stop="22015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTTGCAGCTTATACAAAGACTCTCTATAATTTGATGATGTCAATCTTCACACAATTTCTATAGAAGACCCAAAAACCTATTCGGTCTCCTTCTTCGTCTTCTTCTTCTCCAACAAAACCATAAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAATCAACAACATGAAGAAAGAGCTTTTCGGGAAAAGGCTTACTGCCTTTTACAATAGTTTGATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAACATGATGATACGACAGTAATCTTTACTCCTATTGGGATATTCTTTTTCTGTACACAGAAAAATTATTCCAAGATTCGATCTTTGAGTTGTTGTGCTACTGTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTCAAGCCAGGGTAATTCGTAACAGCAAGGGGTTTACTGGTGTTTTTGATGATGATTGTAATTGGCCGTTTGTTGTGGGTT</genome_strand>
        <mrna_strand>CCAAGTTGCAGCTTATACAAAGACTCTCTATAATTTGATGATGTCAATCTTCACACAATTTCTATAGAAGACCCAAAAACCTATTCGGTCTCCTTCTTCGTCTTCTTCTTCTCCAACAAAACCATAAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAATCAACAACATGAAGAAAGAGCTTTTCGGGAAAAGGCTTACTGCCTTTTACAATAGTTTGATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAACATGATGATACGACAGTAATCTTTACTCCTATTGGGATATTCTTTTTCTGTACACAGAAAAATTATTCCAAGATTCGATCTTTGAGTTGTTGTGCTACTGTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTCAAGCCAGGGGTATTCGTAACAGCAAGGGGTTTACTGGGGTTTTTGAAGATGATTGGAATTGGGCGTTTGTTGTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293830" ref_strand="+" ref_description="SGN-E293830 [cLET-37-O24]">
      <seq>caagttgcagcttatacaaagactctctataatttgatgatgtcaatcttcacacaatttctatagaagacccaaaaacctattcggactccttcttcgtcttcttcttctccaacaaaaccataaaaaccccatcaccgtgcaattttttcccaattctgaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="22916" stop="22150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22616" g_stop="22450" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E293830" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22616" e_stop="22450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTGCAGCTTATACAAAGACTCTCTATAATTTGATGATGTCAATCTTCACACAATTTCTATAGAAGACCCAAAAACCTATTCGGTCTCCTTCTTCGTCTTCTTCTTCTCCAACAAAACCATAAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAA</genome_strand>
        <mrna_strand>CAAGTTGCAGCTTATACAAAGACTCTCTATAATTTGATGATGTCAATCTTCACACAATTTCTATAGAAGACCCAAAAACCTATTCGGACTCCTTCTTCGTCTTCTTCTTCTCCAACAAAACCATAAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361566" ref_strand="+" ref_description="SGN-E361566 [cLPP-6-L1]">
      <seq>aaagaaccaaatctataattcgtaaagactaagcaaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatcccacaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcgtcatgcctcgagtgttttctttgtgggggtgagctgtatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28421" stop="31098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28721" g_stop="28930" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30798" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="425" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E361566" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28721" e_stop="28930"/>
          <exon e_start="30584" e_stop="30798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTT</genome_strand>
        <mrna_strand>AAAGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCACAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCGTCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338654" ref_strand="+" ref_description="SGN-E338654 [cTOE-15-P5]">
      <seq>aaagaaccaaatctataattcgtaaagactaagcaaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28421" stop="31075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28721" g_stop="28930" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30775" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="402" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E338654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28721" e_stop="28930"/>
          <exon e_start="30584" e_stop="30775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTT</genome_strand>
        <mrna_strand>AAAGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308146" ref_strand="+" ref_description="SGN-E308146 [cLEY-14-C16]">
      <seq>aagaaccaaatctataattcgtaaagactaagcaaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28422" stop="31174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28722" g_stop="28930" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30874" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="500" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E308146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28722" e_stop="28930"/>
          <exon e_start="30584" e_stop="30874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCAC</genome_strand>
        <mrna_strand>AAGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274331" ref_strand="+" ref_description="SGN-E274331 [cLEN-15-B15]">
      <seq>agaaccaaatctataattcgtaaagactaagcaaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatgtctccttcacaatggttttggggtttacaacattttcaagaacaactgtgaggatttcgcgatctactgcaagactggtttgctagtctttacaaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28423" stop="31302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28723" g_stop="28930" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="31002" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="627" r_length="419" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E274331" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28723" e_stop="28930"/>
          <exon e_start="30584" e_stop="31002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTC</genome_strand>
        <mrna_strand>AGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATGTCTCCTTCACAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274330" ref_strand="+" ref_description="SGN-E274330 [cLEN-15-B13]">
      <seq>agaaccaaatctataattcgtaaagactaagcaaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28423" stop="31196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28723" g_stop="28930" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30896" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="521" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E274330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28723" e_stop="28930"/>
          <exon e_start="30584" e_stop="30896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGC</genome_strand>
        <mrna_strand>AGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297482" ref_strand="+" ref_description="SGN-E297482 [cLET-28-K11]">
      <seq>gaaccaaatctataattcgtaaagactaagcaaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatttctccttcagaatggttttggggtttacaacattttcaagaacaactgtgaggatttcgcgatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28424" stop="31270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28724" g_stop="28930" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30970" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="594" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E297482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28724" e_stop="28930"/>
          <exon e_start="30584" e_stop="30970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACT</genome_strand>
        <mrna_strand>GAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342581" ref_strand="+" ref_description="SGN-E342581 [cTOF-7-M7]">
      <seq>ccaaatctataattcgtaaagactaagcaaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttntaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatttctccttcagaatggttttgggggtttacaacattttcaagaacaactgtgaggatttcgcgatctactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28427" stop="31272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28727" g_stop="28930" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30972" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="594" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E342581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28727" e_stop="28930"/>
          <exon e_start="30584" e_stop="30972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTT-GGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGC</genome_strand>
        <mrna_strand>CCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTNTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364427" ref_strand="+" ref_description="SGN-E364427 [cLPP-20-F10]">
      <seq>taaagactaagcatagcgtcacatcccaaaacttatggagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctggcgaataagatcccacaagatgaactcaagcctggagatcatatttattcatggagaaacgcctatctctatgctcatcacggaatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttgtagaccgtgtaatattcagctcatctacttcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28443" stop="30994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28743" g_stop="28930" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30694" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="299" r_length="111" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E364427" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28743" e_stop="28930"/>
          <exon e_start="30584" e_stop="30694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATC</genome_strand>
        <mrna_strand>TAAAGACTAAGCATAGCGTCACATCCCAAAACTTATGGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGGCGAATAAGATCCCACAAGATGAACTCAAGCCTGGAGATCATATTTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTGTAGACCGTGTAATATTCAGCTCATCTACTTCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360580" ref_strand="+" ref_description="SGN-E360580 [cLPP-7-A13]">
      <seq>aaagactaagcaaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatactgtcaaataagatcccacaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcacgtcaagagattggaactggaactgttttagaccgtttgatattcagctcatctccttcacattcctctggctccccatgtcctagatgtggtgatcaatcaaagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28444" stop="31038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28744" g_stop="28930" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30738" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="342" r_length="155" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E360580" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28744" e_stop="28930"/>
          <exon e_start="30584" e_stop="30738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACT</genome_strand>
        <mrna_strand>AAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATACTGTCAAATAAGATCCCACAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCACGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTGATATTCAGCTCATCTCCTTCACATTCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363197" ref_strand="+" ref_description="SGN-E363197 [cLPP-19-I6]">
      <seq>gactaagcaaagcgtcacatcccagaacttattgagtcatcggaaagggaagtgatgtctgaatcaagccggtggactatgccggagatggccggaatcctgtcaaataatatcccacaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28447" stop="31018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28747" g_stop="28930" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30718" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="319" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E363197" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28747" e_stop="28930"/>
          <exon e_start="30584" e_stop="30718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGAT</genome_strand>
        <mrna_strand>GACTAAGCAAAGCGTCACATCCCAGAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCTGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAATATCCCACAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363407" ref_strand="+" ref_description="SGN-E363407 [cLPP-4-K11]">
      <seq>aaagcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatcccacaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcgtcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28455" stop="31104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28755" g_stop="28930" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30804" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="397" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E363407" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28755" e_stop="28930"/>
          <exon e_start="30584" e_stop="30804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTAT</genome_strand>
        <mrna_strand>AAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCACAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCGTCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374524" ref_strand="+" ref_description="SGN-E374524 [TUS-38-L8]">
      <seq>agcgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctacatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatttctccttcagaatggttttggggtttacaacattttcaagaacaactgtgaggatttcgcgatctactgcaagactggtttgctagtctttacaaatgtcagtgtacgccggagtgggcaggcaacatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28457" stop="31333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28757" g_stop="28930" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="31033" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="624" r_length="450" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E374524" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28757" e_stop="28930"/>
          <exon e_start="30584" e_stop="31033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCT</genome_strand>
        <mrna_strand>AGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTACATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTACGCCGGAGTGGGCAGGCAACATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373579" ref_strand="+" ref_description="SGN-E373579 [TUS-33-A24]">
      <seq>cgtcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatttctccttcagaatggttttggggtttacaacattttcaagaacaactgtgaggatttcgcgatctactgcaagactggtttgctagtctttacaaatgtcagtgtaggccggagtgggcaggcaacatcctttttagctgccacaactgccattgtttcatcaccactgcgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28459" stop="31378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28759" g_stop="28930" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="31078" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="667" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E373579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28759" e_stop="28930"/>
          <exon e_start="30584" e_stop="31078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTC</genome_strand>
        <mrna_strand>CGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361776" ref_strand="+" ref_description="SGN-E361776 [cLPP-12-I5]">
      <seq>tcacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatcccacaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcgtcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28461" stop="31161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28761" g_stop="28930" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30861" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="448" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E361776" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28761" e_stop="28930"/>
          <exon e_start="30584" e_stop="30861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCC</genome_strand>
        <mrna_strand>TCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCACAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCGTCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277488" ref_strand="+" ref_description="SGN-E277488 [cLER-3-K18]">
      <seq>cacatcccaaaacttattgagtcatcggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28462" stop="31159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28762" g_stop="28930" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="30859" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="445" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E277488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28762" e_stop="28930"/>
          <exon e_start="30584" e_stop="30859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTG</genome_strand>
        <mrna_strand>CACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697421" ref_strand="+" ref_description="SGN-E697421 [FA02DD08]">
      <seq>ccctttaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatcttcttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccctgctaaatttctccttcagaatggttttggggtttaccacattttcaagaacaactgtgaggatttcgcgatctactgcacgactggcctgctagtctttacacatgtcagtgtacgccggagtgggcaggcaacatcctttttagctgccacaactgccattgtttcgtccccactgcgctcttctaactaacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28491" stop="31389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28785" g_stop="28930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="31089" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="654" r_length="508" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E697421" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28785" e_stop="28930"/>
          <exon e_start="30584" e_stop="31089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCT-TTCTAACT-ACAGGT</genome_strand>
        <mrna_strand>CCCTTTAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTCTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCCTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACCACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCACGACTGGCCTGCTAGTCTTTACACATGTCAGTGTACGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCGTCCCCACTGCGCTCTTCTAACTAACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709210" ref_strand="+" ref_description="SGN-E709210 [FA51AB03]">
      <seq>cggaaagggaagtgatgtcggaatcaagccggtggactatgccggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatttctccttcagaatggttttggggtttacaacattttcaagaacaactttgaggatttcgcgatctactgcaagactggtttgctagtctttacaaatgtcagtgtaggccggagtgggcaggcaacatcctttttagctgccacaactgccattgtttcatcaccactgcgctttctaactacaggtgtttctggtctggctgctgttggttttggtgtttactgtgtcagccggtatgtttctgatattggtgtacgtcgtgatgtcatgaagatccctgttgagagacttatcctatgccctggccctctggagtctgaagctgctactattactgatatatcaaaggacaagggctcgtaattctatgtaagttgactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28487" stop="31585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28787" g_stop="28930" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="31285" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="846" r_length="702" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E709210" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28787" e_stop="28930"/>
          <exon e_start="30584" e_stop="31285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGC</genome_strand>
        <mrna_strand>CGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTTTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702142" ref_strand="+" ref_description="SGN-E702142 [FA17DF09]">
      <seq>ggagatggccggaatcctgtcaaataagatccctcaagatgaactcaagcctggagatcatatctattcatggagaaacgcctatctctatgctcatcacggtatatatgttggcgatggtatggttatccattttactcgagctgcaggtcaagagattggaactggaactgttttagaccgtttcatattcagctcatctccttcacatccctctggctccccatgtcctagatgtggtgatcaatcaaggactgaaggtgttatctcatcatgcctcgagtgttttctttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatttctccttcagaatggttttggggtttacaacattttcaagaacaactgtgaggatttcgcgatctactgcaagactggtttgctagtctttacaaatgtcagtgtaggccggagtgggcaggcaacatcctttttagctgccacaactgccattgtttcatcaccactgcgctttctaactacaggtgtttctggtctggctgctgttggttttggtgtttactgtgtcagccggtatgtttctgatattggtgtacgtcgtgatgtcatgaagatccctgttgagagacttatcctatgccctggccctctggagtctgaagctgctactattactgatatatcaaaggacaagggctcgtaattctatgtaagttgactgcatggatctcattaagtaggttactaccacatacaatgttgtaggtgttgatgttgtcattgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="28530" stop="31651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28830" g_stop="28930" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30584" g_stop="31351" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="869" r_length="768" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E702142" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28830" e_stop="28930"/>
          <exon e_start="30584" e_stop="31351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACGGTTATTTTCCACTTTTTTTTTTCTTTTGCTTAATATCACGGGAAATCCTTTTTGCGCTTTACTCTTAGATGAACTTTCTCGATGTTTTTAATTTCTGTTTGTATCTACGTTTTGATTTTTATACAAAATGGGTCAAATTTCGATTTGATTATGTTTTTTTATTCATTCCAAGTATTAATAGGAAGGAATTTTTTTGAAATCGGGAGAAATAGCTTCAATGTTTTGTTGAATATTATCAGAAAGTACATTTAGGAGCTTATTAAAGAAACGAGACAATTTGAATTGGTAATTAGCAGAATAGTCAATTCAATTCTCGATGGAAATGCTACTTTTAAGTCTAATTTGACTGGTTTGGGAAAACTTGAATTTATGCTATAATCAACCTTTCCAAATCAAAAGGAGATTCCGCTAGGAGTTGTCGCAAGCTAATTCAGAAATGAAAGAAGTCTAACCAACTCTTATTTGCTGTGGATCTACTCGCCCGGACTTTGTGGAAGCTCTGTTTCCCCTAATTCAGAAACACAATAATAGACTTGCCAAAGTGGCTTGACTTCAGTTTTTGCTAATTATGGATATGATGAGCTTTGATGTACTTAAAACTCATGTAATGGAAATAAGTGAGTTGAATTTGTTGAGCTTTGCTAATTATGGTTATGGTGAGTTGTGCGCAAGGGCGGACCCACCCTTGACCGAGAGGTGTCAAGCGACACCCCTTCGGCAGTAAACTACATTGTATATAGAGGTCAAATTTTGGTTATATATATATATATATATATATATATATATATATATGAATGTGTAAGTATTGACAACTTTAGTCTAGTGATTAAGGGGTTGCAAAAGTTCCTAAAGGTTGTGTGTTTCAAGCGTGCGTACATCCCGCCTTCTTCAAACCCCACTTGTGGGATTACACTAGGTGTGTTGTTGTCGTATAGAATCTCCATCTGATCATTTGTGTTATGGTCTTTGAGATACATTTTTTGTCATTAAACTGTGGCAGAGGTAATTTGTTTTGTTTAATAATTTTTCTTATATTGAACTTAGTATTCCACGTTAGCAATGGAGTCTCTTACACCAGCATTGTATTGTGGACTCTCCCTACCACAAGTTGAAAGGATCTCTTTAAGAGGTTATATTGCTTATTGTCAGTCTATTAGGTTGATGCTAGTTTTACCTTTCTAGTACATAAAGAAAAGAACTTACTTTTAGTTTTGGATAAATATATATAAGGATGACTTTAGTCCTGAGGATCTCAATTTCTTTTAAGGTTCGTTATTACCTTACATGTTTCTAAAGACTCGAGTTTGGTTTTTGAATATTTTATGAAGGCTTTTCAGTTTTTAAAAAATCAACTATATATGTCCAACTACAACTCTTAACAATTTGGATCTCTGAACATTACATAAGGAAATCATTGCATTCATAGTTGGATAAATATTGAAAGAAAAGAAAATATTTGCATCAAGTATGGCAAATGAAAGCTCAGAAATTGTTATGGGACAAAAAGTTCGAAAGCAACTTTTGTTCCTGGGGCTTGGGGTGGGTGGGTGAGATTAAGAAGCTTTAATTGTGTGTCACATGTGTATTGGTACATTTTTGTTTGTTTCCTAGCTTGTTGTCGTAATGTTTCTGTATGTGCTCTGAACATTTCAGGTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTT</genome_strand>
        <mrna_strand>GGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACCACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715562" ref_strand="-" ref_description="SGN-E715562 [FB14CF02]">
      <seq>tccatatgaaccatggaacattgttataaacaatttacaataacatatcaaagcattcatttgatggaagaacgcacacaaggcctagtttaaatggccattgtttcaataataaccaaacctaagtcacaaaagcaatgacaacatcaacacctacaacattgtatgttgtagtaacctacttaatgagatccatgcagtcaacttacatagaattacgagcccttgtcctttgatatatcagtaatagtagcagcttcagactccagagggccagggcataggataagtctctcaacagggatcttcatgacatcacgacgtacaccaatatcagaaacataccggctgacacagtaaacaccaaaaccaacagcagccagaccagaaacacctgtagttagaaagcgcagtggtgatgaaacaatggcagttgtggcagctaaaaaggatgttgcctgcccactccggcctacactgacatttgtaaagactagcaaaccagtcttgcagtagatcgcgaaatcctcacagttgttcttgaaaatgttgtaaaccccaaaaccattctgaaggagaaatttagcaataaaaacccctggtgagacaccatacttaaaaagatacagctcacccccacaaagaaaacactcgaggcatgatgagataacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="31781" stop="30443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31481" g_stop="30896" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30895" i_stop="30830" i_length="66">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30829" g_stop="30743" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="673" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E715562" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715562" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31481" e_stop="30896"/>
          <exon e_start="30829" e_stop="30743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATATGAACCATGGAACATTGTTATAAACAATTTACAATAACATATCAAAGCATTCATTTGATGGAAGAACGCACACAAGGCCTAGTTTAAATGGCCATTGTTTCAATAATAACCAAACCTAAGTCACAAAAGCAATGACAACATCAACACCTACAACATTGTATGTTGTAGTAACCTACTTAATGAGATCCATGCAGTCAACTTACATAGAATTACGAGCCCTTGTCCTTTGATATATCAGTAATAGTAGCAGCTTCAGACTCCAGAGGGCCAGGGCATAGGATAAGTCTCTCAACAGGGATCTTCATGACATCACGACGTACACCAATATCAGAAACATACCGGCTGACACAGTAAACACCAAAACCAACAGCAGCCAGACCAGAAACACCTGTAGTTAGAAAGCGCAGTGGTGATGAAACAATGGCAGTTGTGGCAGCTAAAAAGGATGTTGCCTGCCCACTCCGGCCTACACTGACATTTGTAAAGACTAGCAAACCAGTCTTGCAGTAGATCGCGAAATCCTCACAGTTGTTCTTGAAAATGTTGTAAACCCCAAAACCATTCTGAAGGAGAAATTTAGCACGGTGCAGGACATGCTCTGGTGGATCAGAAGGGGCAATTGTGCATGTTCCTCCTCGAGTTTTAGCAATAAAAACCCCTGGTGAGACACCATACTTAAAAAGATACAGCTCACCCCCACAAAGAAAACACTCGAGGCATGATGAGATAACAC</genome_strand>
        <mrna_strand>TCCATATGAACCATGGAACATTGTTATAAACAATTTACAATAACATATCAAAGCATTCATTTGATGGAAGAACGCACACAAGGCCTAGTTTAAATGGCCATTGTTTCAATAATAACCAAACCTAAGTCACAAAAGCAATGACAACATCAACACCTACAACATTGTATGTTGTAGTAACCTACTTAATGAGATCCATGCAGTCAACTTACATAGAATTACGAGCCCTTGTCCTTTGATATATCAGTAATAGTAGCAGCTTCAGACTCCAGAGGGCCAGGGCATAGGATAAGTCTCTCAACAGGGATCTTCATGACATCACGACGTACACCAATATCAGAAACATACCGGCTGACACAGTAAACACCAAAACCAACAGCAGCCAGACCAGAAACACCTGTAGTTAGAAAGCGCAGTGGTGATGAAACAATGGCAGTTGTGGCAGCTAAAAAGGATGTTGCCTGCCCACTCCGGCCTACACTGACATTTGTAAAGACTAGCAAACCAGTCTTGCAGTAGATCGCGAAATCCTCACAGTTGTTCTTGAAAATGTTGTAAACCCCAAAACCATTCTGAAGGAGAAATTTAG..................................................................CAATAAAAACCCCTGGTGAGACACCATACTTAAAAAGATACAGCTCACCCCCACAAAGAAAACACTCGAGGCATGATGAGATAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273616" ref_strand="+" ref_description="SGN-E273616 [cLEN-6-I23]">
      <seq>tttgtgggggtgagctgtatctttttaagtatggtgtctcaccaggggtttttattgctaaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatttctccttcagaatggttttggggtttacaacattttcaagaacaactgtgaggatttcgcgatctactgcaagactggtttgctagtctttacaaatgtcagtgtaggccggagtgggcaggcaacatcctttttagctgccacaactgccattgtttcatcaccactgcgctttctaactacaggtgtttctggtctggctgctgttggttttggtgtttactgtgtcagccggtatgtttctgatattggtgtacgtcgtgatgtcatgaagatccctgttgagagacttatcctatgccctggccctctggagtctgaagctgctactattactgatatatcaaaggacaagggctcgtaattctatgtaagttgactgcatggatctcattaagtaggttactacaacatacaatgttgtaggtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="30473" stop="31637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30773" g_stop="31337" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E273616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30773" e_stop="31337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATG</genome_strand>
        <mrna_strand>TTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373578" ref_strand="+" ref_description="SGN-E373578 [TUS-33-A24](-)">
      <seq>aaaactcgaggaggaacatgcacaattgccccttctgatccaccagagcatgtcctgcaccgtgctaaatttctccttcagaatggttttggggtttacaacattttcaagaacaactgtgaggatttcgcgatctactgcaagactggtttgctagtctttacaaatgtcagtgtaggccggagtgggcaggcaacatcctttttagctgccacaactgccattgtttcatcaccactgcgctttctaactacaggtgtttctggtctggctgctgttggttttggtgtttactgtgtcagccggtatgtttctgatattggtgtacgtcgtgatgtcatgaagatccctgttgagagacttatcctatgccctggccctctggagtctgaagctgctactattactgatatatcaaaggacaagggctcgtaattctatgtaagttgactgcatggatctcattaagtaggttactacaacatacaatgttgtaggtgttgatgttgtcattgcttttgtgacttaggtttggttattattgaaacaatggccatttaaactaggccttgtgtgcgttcttccatcaaatgaatgctttgatatgttattgtaaattgtttataacaatgttccatggttcatatggaagacaagtgtgttttgtgtgttaacaagatggttagtctaagaatgacaaattgattgtttttggacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="30532" stop="31852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30832" g_stop="31558" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E373578" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30832" e_stop="31558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCATGGTTCATATGGAAGACAAGTGTGTTTTGTGTGTTAACAAGATGGTTAGTCTAAGAATGACAAATTGATTGTTTTTGTGACATAGGTTTG</genome_strand>
        <mrna_strand>AAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCATGGTTCATATGGAAGACAAGTGTGTTTTGTGTGTTAACAAGATGGTTAGTCTAAGAATGACAAATTGATTGTTTTTG-GACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221574" ref_strand="+" ref_description="SGN-E221574 [cLEL-10-A15](-)">
      <seq>ggtgtttctggtctggctgctgttggttttggtgtttactgtgtcagccggtatgtttctgatattggtgtacgtcgtgatgtcatgaagatccctgttgagagacttatcctatgccctggccctctggagtctgaagctgctactattactgatatatcaaaggacaagggctcgtaattctatgtaagttgactgcatggatctcattaagtaggttactacaacatacaatgttgtaggtgttgatgttgtcattgcttttgtgacttaggtttggttattattgaaacaatggccatttaaactaggccttgtgtgcgttcttccatcaaatgaatgctttgatatgttattgtaaattgtttataccaatgttccatggttcatatggaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="30787" stop="31787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31087" g_stop="31487" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="416"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E221574" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31087" e_stop="31487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCATGGTTCATATGGAAGACAA</genome_strand>
        <mrna_strand>GGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATACCAATGTTCCATGGTTCATATGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347992" ref_strand="+" ref_description="SGN-E347992 [cTOF-31-A21]">
      <seq>tatgtttctgatattggtgtacgtcgtgatgtcatgaagatccctgttgagagacttatcctatgccctggccctctggagtctgaagctgctactattactgatatatcaaaggacaagggctcgtaattctatgtaagttgactgcatggatctcattaagtaggttactacaacatacaatgttgtaggtgttgatgttgtcattgcttttgtgacttaggtttggttattattgaaacaatggccatttaaactaggccttgtgtgcgttcttccatcaaatgaatgctttgatatgttattgtaaattgtttataacaatgttccatggttcatatggaagacaagtgtgttttgtgtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="30838" stop="31810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31138" g_stop="31513" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E347992" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31138" e_stop="31513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCATGGTTCATATGGAAGACAAGTGTGTTTTGTGTGTTAACAAGATGG</genome_strand>
        <mrna_strand>TATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCATGGTTCATATGGAAGACAAGTGTGTTTTGTGTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222888" ref_strand="+" ref_description="SGN-E222888 [cLEL-38-G20](-)">
      <seq>tatgccctggccctctggagtctgaagctgctactattactgatatatcaaaggacaagggctcgtaattctatgtaagttgactgcatggatctcattaagtaggttactacaacatacaatgttgtaggtgttgatgttgtcattgcttttgtgacttaggtttggttattattgaaacaatggccatttaaactaggccttgtgtgcgttcttccatcaaatgaatgctttgatatgttattgtaaattgtttataacaatgttccatggttcatatggaagacaagtgtgttttgtgtgttaacaagatggttagtctaagaatgacaaattgattgtttttgtgtcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="30899" stop="31852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31199" g_stop="31549" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="369"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E222888" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31199" e_stop="31549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCATGGTTCATATGGAAGACAAGTGTGTTTTGTGTGTTAACAAGATGGTTAGTCTAAGAATGACAAATTGATTGTTTTTGTGAC</genome_strand>
        <mrna_strand>TATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCATGGTTCATATGGAAGACAAGTGTGTTTTGTGTGTTAACAAGATGGTTAGTCTAAGAATGACAAATTGATTGTTTTTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230181" ref_strand="+" ref_description="SGN-E230181 [cLEL-33-H19](-)">
      <seq>cctctggagtctaaagctgctactattactgatatatcaaaggacaagggctcgtaattctatgtaagttgactgcatggatctcattaagtaggttactacaacatacaatgttgtaggtgttgatgttgtcattgcttttgtgacttaggtttggttattattgaaacaatggccatttaaactaggccttgtgtgcgttcttccatcaaatgaatgctttgatatgttattgtaaattgtttataacaatgttccactggttcacatggaagacaagtgtggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="30910" stop="31792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31210" g_stop="31496" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E230181" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31210" e_stop="31496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCA-TGGTTCATATGGAAGACAAGTGTGTTTT</genome_strand>
        <mrna_strand>CCTCTGGAGTCTAAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCACTGGTTCACATGGAAGACAAGTGTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716823" ref_strand="+" ref_description="SGN-E716823 [FB18AE08]">
      <seq>ctctattctgccatatctctgttacttccgggtgatctaagtttctttaattgccacaagttttgcagcaaatctggtatatacgcaacaactgctattgaagctaaaattaaggttgtggctgcagtagacttgcctcagagagttttggtttcgttataattgtcactagtgccccaaatatgtgtttggtgtttgtatgtgatgaagatgagagggtgttacaaagacaggcagctccaggagcttgtccttactgcggagggatggttcaagccgtggacatggagagtcagtggagattctgctttgtcccttattatttcaagactaaacgcagatactactgtaccctttgcaccagacgtctcatcatccaataattttacctaatctcatgatatagcctctttgtggtccttgaactttctagaaaacaaagatgtatgatcttttggcttttcaggtgtaaagggtgtgtatgtgttattgttatctgagttttatatgttggtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="37653" stop="38770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37953" g_stop="38470" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="532"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E716823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37953" e_stop="38470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATTCTGCCATATCTCTGTTACTTCCGGGTGATCTAAGTTTCTTTAATTGCCACAAGTTTTGCAGCAAATCTGGTATATACGCAACAACTGCTATTGAAGCTAAAATTAAGGTTGTGGCTGCAGTAGACTTGCCTCAGAGAGTTTTGGTTTCGTTATAATTGTCACTAGTGCCCCAAATATGTGTTTGGTGTTTGTATGTGATGAAGATGAGAGGGTGTTACAAAGACAGGCAGCTCCAGGAGCTTGTCCTTACTGCGGAGGGATGGTTCAAGCCGTGGACATGGAGAGTCAGTGGAGATTCTGCTTTGTCCCTTATTATTTCAAGACTAAACGCAGATACTACTGTACCCTTTGCACCAGACGTCTCATCATCCAATAATTTTACCTAATCTTATGATATAGCCTCTTTGTGGTCCTTGAACTTTCTAGAAAACAAAGATGTATGATCTTTTGGCTTTTCAGGTGTAAAGGGTGTGTATGTGTTATTGTTATCTGAGTTTTATATGTTGGTTTA</genome_strand>
        <mrna_strand>CTCTATTCTGCCATATCTCTGTTACTTCCGGGTGATCTAAGTTTCTTTAATTGCCACAAGTTTTGCAGCAAATCTGGTATATACGCAACAACTGCTATTGAAGCTAAAATTAAGGTTGTGGCTGCAGTAGACTTGCCTCAGAGAGTTTTGGTTTCGTTATAATTGTCACTAGTGCCCCAAATATGTGTTTGGTGTTTGTATGTGATGAAGATGAGAGGGTGTTACAAAGACAGGCAGCTCCAGGAGCTTGTCCTTACTGCGGAGGGATGGTTCAAGCCGTGGACATGGAGAGTCAGTGGAGATTCTGCTTTGTCCCTTATTATTTCAAGACTAAACGCAGATACTACTGTACCCTTTGCACCAGACGTCTCATCATCCAATAATTTTACCTAATCTCATGATATAGCCTCTTTGTGGTCCTTGAACTTTCTAGAAAACAAAGATGTATGATCTTTTGGCTTTTCAGGTGTAAAGGGTGTGTATGTGTTATTGTTATCTGAGTTTTATATGTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712096" ref_strand="+" ref_description="SGN-E712096 [FB03DE08]">
      <seq>cccaaatatgtgtttggtgtttgtatgtgatgaagatgagagggtgttacaaagacaggcagctccaggagcttgtccttactgcggagggatggttcaagccgtggacatggagagtcagtggagattctgctttgtcccttattatttcaagactaaacgcagatactactgtaccctttgcaccagacgtctcatcatccaataattttacctaatcttatgatatagcctctttgtggtccttgaactttctagaaaacaaagatgtatgatcttttggcttttcaggtgtaaagggtgtgtatgtgttattgttatctgagttttatatgttggtttaccatttctctttaattatttgttggttatctatagataactactctgttctggttccaaaatcatatggttagaagttagaattacaaaataaggaaaaaggaaaatgtacaaatttacctgtgatatttgggatttgtcttgcattttccctttgtttacctttcggtccacaaaagtccacattaatggaaaattgctctgattttgctgatatgaaggaagccacacatgatattatctgttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="37828" stop="39021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38128" g_stop="38712" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="603"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E712096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38128" e_stop="38712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATATGTGTTTGGTGTTTGTATGTGATGAAGATGAGAGGGTGTTACAAAGACAGGCAGCTCCAGGAGCTTGTCCTTACTGCGGAGGGATGGTTCAAGCCGTGGACATGGAGAGTCAGTGGAGATTCTGCTTTGTCCCTTATTATTTCAAGACTAAACGCAGATACTACTGTACCCTTTGCACCAGACGTCTCATCATCCAATAATTTTACCTAATCTTATGATATAGCCTCTTTGTGGTCCTTGAACTTTCTAGAAAACAAAGATGTATGATCTTTTGGCTTTTCAGGTGTAAAGGGTGTGTATGTGTTATTGTTATCTGAGTTTTATATGTTGGTTTACCATTTCTCTTTAATTATTTGTTGGTTATCTATAGATAACTACTCTGTTCTGGTTCCAAAATCATATGGTTAGAAGTTAGAATTACAAAATAAGGAAAAAGGAAAATGTACAAATTTACCTGTGATATTTGGGATTTGTCTTGCATTTTCCCTTTGTTTACCTTTCGGTCCACAAAAGTCCACATTAATGGAAAATTGCTCTGATTTTGCTGATATGAAGGAAGCCACACATGATATTATCT</genome_strand>
        <mrna_strand>CCCAAATATGTGTTTGGTGTTTGTATGTGATGAAGATGAGAGGGTGTTACAAAGACAGGCAGCTCCAGGAGCTTGTCCTTACTGCGGAGGGATGGTTCAAGCCGTGGACATGGAGAGTCAGTGGAGATTCTGCTTTGTCCCTTATTATTTCAAGACTAAACGCAGATACTACTGTACCCTTTGCACCAGACGTCTCATCATCCAATAATTTTACCTAATCTTATGATATAGCCTCTTTGTGGTCCTTGAACTTTCTAGAAAACAAAGATGTATGATCTTTTGGCTTTTCAGGTGTAAAGGGTGTGTATGTGTTATTGTTATCTGAGTTTTATATGTTGGTTTACCATTTCTCTTTAATTATTTGTTGGTTATCTATAGATAACTACTCTGTTCTGGTTCCAAAATCATATGGTTAGAAGTTAGAATTACAAAATAAGGAAAAAGGAAAATGTACAAATTTACCTGTGATATTTGGGATTTGTCTTGCATTTTCCCTTTGTTTACCTTTCGGTCCACAAAAGTCCACATTAATGGAAAATTGCTCTGATTTTGCTGATATGAAGGAAGCCACACATGATATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747673" ref_strand="+" ref_description="SGN-E747673 [GI|66954651]">
      <seq>ctgccttcaacttcccaaactgcaattcatagttcataagcacaaaaagcctaagtagaggaaaacaaaatgtctactgctctttctttgtctgtctctcagttccccctatgcaaatcccaagacttctccaaggatgtttacaatcctaaaatctccaataaagaaaccccatgtcagaaaacacattcagacaccagaataaacaggaggaagctgttgagtactagtggtttgagccttgtagcagggactttgtctaagccagcaagagctgagactgaagcaccagttgaggtaacttcaagtagaatgtcatattcaagattcttggattacttgaatcaaggtgctgtcaagaaagttgatttctttgagaacagtgctgttgctgagatattgatcaatcctgctcttaacaaagtccagagagttaaaattcagttgccaggattgccaccagaattggtgagaaaacttaaagacaagaatgtagattttgctgctcatctacctgaaaagaatgtaattggaccacttcttgatttgcttgggaatttagcttttccattgatattgcttggttatttactgttgagaagctcttcaaatacccctggagggccaaacttgccttttggattaggaaggagcaaagccaaattccagatggaaccaaatacaggagtaacatttgatgatgtggctggagttaatgaagcaaaacaagattttcaagagattgttgagtttttgaagactccagagaagtttgctgcagttggagcaaagataccaaagggatttctcttagtagggccaccagggacagggaagacattgctggctaaggcgattgctggagaagcaggggtgccattcttttctctctctggctcagagttcattgagatgtttgttggtgtgggagcttctagagttagggacttattcaacaaggcgaaacaaaattcgccttgcataatttttattgatgaaattgatgctgttgggaggcagagaggaactggtattggtggaggaaatgatgaaagagagcagacactgaaccaacttcttactgaaatggatggttttactgggaacactggagtcattgtcattgctgctactaataggcctgaaattcttgatcaagctttgcttagacctggaaggtttgataggcaggtaactgttggactgcctgatataagaggaagagaagaaatattgaaagttcacagtaacaacaagaagcttgacaaagatgtgtctctaagtgttattgcaatgagaacaccaggattcagtggtgcagatcttgcaaacctgatgaatgaagctgccattctagctggaaggagaggaaaagataagattacctcaaaagagatagatgattccatcgatagaattgtcgctggaatggaaggaactaccatgacagatggaaagaacaagattctggtagcataccatgaggttggacatgctgtctgcgcgacattgacccctggccatgatgcagtacagaaagtcacattgatcccaagaggtcaagctcgcggtcttacatggttcattcctggtgaagatccaaccttaatctctaagaagcaactctttgctagaatagtgggaggcttaggaggtagagcagcagaggaaataatttttggtgaaccagaaatcactactggtgcagcaggagacttgcaacaaataactcaaatagcaagacagatggttacaatgtttgggatgtctgagattggaccatgggcgttaacagatccagcagcacaaagtggcgatgtggtgctgagaatgctagcgaggaatcaaatgtcagagaaactagcagaagacattgatgaatctgtaaggcacataatcgagagagcatatgaaattgcaaagaaccacatcaggaacaacagggaggcaatcgacaaattagtggatgtcctgctggaaaaggagactcttacaggagatgagtttagagctatactctcagaattcactgatatcccattcgttaacataaacagaaaaccaattagagaactaattgaggcctaggtgaaattacttccaatgtacagctgcagaaactaaataccttcacaagattttacatgtttaatgcagtgcagaaagcaagatcaatgtaatataaatagataatcttcatcaactttgtgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="42019" stop="38739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41719" g_stop="41070" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41069" i_stop="40978" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40977" g_stop="40437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="1191" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40436" i_stop="40337" i_length="100">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40336" g_stop="40023" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1192" r_stop="1505" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40022" i_stop="39846" i_length="177">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39845" g_stop="39605" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1506" r_stop="1746" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39604" i_stop="39506" i_length="99">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39505" g_stop="39039" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1747" r_stop="2213" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E747673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2213</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41719" e_stop="41070"/>
          <exon e_start="40977" e_stop="40437"/>
          <exon e_start="40336" e_stop="40023"/>
          <exon e_start="39845" e_stop="39605"/>
          <exon e_start="39505" e_stop="39039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTTCAACTTCCCAAACTGCAATTCATAGTTCATAAGCACAAAAAGCCTAAGTAGAGGAAAACAAAATGTCTACTGCTCTTTCTTTGTCTGTCTCTCAGTTCCCCCTATGCAAATCCCAAGACTTCTCCAAGGATGTTTACAATCCTAAAATCTCCAATAAAGAAACCCCATGTCAGAAAACACATTCAGACACCAGAATAAACAGGAGGAAGCTGTTGAGTACTAGTGGTTTGAGCCTTGTAGCAGGGACTTTGTCTAAGCCAGCAAGAGCTGAGACTGAAGCACCAGTTGAGGTAACTTCAAGTAGAATGTCATATTCAAGATTCTTGGATTACTTGAATCAAGGTGCTGTCAAGAAAGTTGATTTCTTTGAGAACAGTGCTGTTGCTGAGATATTGATCAATCCTGCTCTTAACAAAGTCCAGAGAGTTAAAATTCAGTTGCCAGGATTGCCACCAGAATTGGTGAGAAAACTTAAAGACAAGAATGTAGATTTTGCTGCTCATCTACCTGAAAAGAATGTAATTGGACCACTTCTTGATTTGCTTGGGAATTTAGCTTTTCCATTGATATTGCTTGGTTATTTACTGTTGAGAAGCTCTTCAAATACCCCTGGAGGGCCAAACTTGCCTTTTGGATTAGGAAGGTATGCTGACTGGGAACTTATAAAAACATGATCAAGATTGAAACTTTATGTCTAATGGATTGATATGCTTAACTTGTTTGTGGACAATGCAGGAGCAAAGCCAAATTCCAGATGGAACCAAATACAGGAGTAACATTTGATGATGTGGCTGGAGTTAATGAAGCAAAACAAGATTTTCAAGAGATTGTTGAGTTTTTGAAGACTCCAGAGAAGTTTGCTGCAGTTGGAGCAAAGATACCAAAGGGATTTCTCTTAGTAGGGCCACCAGGGACAGGGAAGACATTGCTGGCTAAGGCGATTGCTGGAGAAGCAGGGGTGCCATTCTTTTCTCTCTCTGGCTCAGAGTTCATTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTTAGGGACTTATTCAACAAGGCGAAACAAAATTCGCCTTGCATAATTTTTATTGATGAAATTGATGCTGTTGGGAGGCAGAGAGGAACTGGTATTGGTGGAGGAAATGATGAAAGAGAGCAGACACTGAACCAACTTCTTACTGAAATGGATGGTTTTACTGGGAACACTGGAGTCATTGTCATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTAGACCTGGAAGGTTTGATAGGCAGGTAAGAAATGAGTTTTTTAATGTAAAATTTCCAAAAAGATTTCAGTTTCCAGGATACACTTCACTAACATTGATATTACATTTATATTGTAATTCAACAGGTAACTGTTGGACTGCCTGATATAAGAGGAAGAGAAGAAATATTGAAAGTTCACAGTAACAACAAGAAGCTTGACAAAGATGTGTCTCTAAGTGTTATTGCAATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGCGTAAGTCAGCAATTCTTGCCCCTTTAATTGTTCTGTTGTTTGTTTTTCAACTAACATTAGGTGTTCAATAGGCCATGCCCTTAAATAAGGTGTCTAAATGAAATAACTGAACAAGTTTAGGAGTGAGCTCTTGTGATCAAAAGACAAGGTACTAAGAGTGAGCTCTTGTGCTTGTAGGACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTCTTGTTGCACCTACTAAAGAAAACAACATAGTCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTACAATGTTTGGGATGTCTGAGATTGGACCATGGGCGTTAACAGATCCAGCAGCACAAAGTGGCGATGTGGTGCTGAGAATGCTAGCGAGGAATCAAATGTCAGAGAAACTAGCAGAAGACATTGATGAATCTGTAAGGCACATAATCGAGAGAGCATATGAAATTGCAAAGAACCACATCAGGAACAACAGGGAGGCAATCGACAAATTAGTGGATGTCCTGCTGGAAAAGGAGACTCTTACAGGAGATGAGTTTAGAGCTATACTCTCAGAATTCACTGATATCCCATTCGTTAACATAAACAGAAAACCAATTAGAGAACTAATTGAGGCCTAGGTGAAATTACTTCCAATGTACAGCTGCAGAAACTAAATACCTTCACAAGATTTTACATGTTTAATGCAGTGCAGAAAGCAAGATCAATGTAATATAAATAGATAATCTTCATCAACTTTGTGTAT</genome_strand>
        <mrna_strand>CTGCCTTCAACTTCCCAAACTGCAATTCATAGTTCATAAGCACAAAAAGCCTAAGTAGAGGAAAACAAAATGTCTACTGCTCTTTCTTTGTCTGTCTCTCAGTTCCCCCTATGCAAATCCCAAGACTTCTCCAAGGATGTTTACAATCCTAAAATCTCCAATAAAGAAACCCCATGTCAGAAAACACATTCAGACACCAGAATAAACAGGAGGAAGCTGTTGAGTACTAGTGGTTTGAGCCTTGTAGCAGGGACTTTGTCTAAGCCAGCAAGAGCTGAGACTGAAGCACCAGTTGAGGTAACTTCAAGTAGAATGTCATATTCAAGATTCTTGGATTACTTGAATCAAGGTGCTGTCAAGAAAGTTGATTTCTTTGAGAACAGTGCTGTTGCTGAGATATTGATCAATCCTGCTCTTAACAAAGTCCAGAGAGTTAAAATTCAGTTGCCAGGATTGCCACCAGAATTGGTGAGAAAACTTAAAGACAAGAATGTAGATTTTGCTGCTCATCTACCTGAAAAGAATGTAATTGGACCACTTCTTGATTTGCTTGGGAATTTAGCTTTTCCATTGATATTGCTTGGTTATTTACTGTTGAGAAGCTCTTCAAATACCCCTGGAGGGCCAAACTTGCCTTTTGGATTAGGAAG............................................................................................GAGCAAAGCCAAATTCCAGATGGAACCAAATACAGGAGTAACATTTGATGATGTGGCTGGAGTTAATGAAGCAAAACAAGATTTTCAAGAGATTGTTGAGTTTTTGAAGACTCCAGAGAAGTTTGCTGCAGTTGGAGCAAAGATACCAAAGGGATTTCTCTTAGTAGGGCCACCAGGGACAGGGAAGACATTGCTGGCTAAGGCGATTGCTGGAGAAGCAGGGGTGCCATTCTTTTCTCTCTCTGGCTCAGAGTTCATTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTTAGGGACTTATTCAACAAGGCGAAACAAAATTCGCCTTGCATAATTTTTATTGATGAAATTGATGCTGTTGGGAGGCAGAGAGGAACTGGTATTGGTGGAGGAAATGATGAAAGAGAGCAGACACTGAACCAACTTCTTACTGAAATGGATGGTTTTACTGGGAACACTGGAGTCATTGTCATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTAGACCTGGAAGGTTTGATAGGCAG....................................................................................................GTAACTGTTGGACTGCCTGATATAAGAGGAAGAGAAGAAATATTGAAAGTTCACAGTAACAACAAGAAGCTTGACAAAGATGTGTCTCTAAGTGTTATTGCAATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGC.................................................................................................................................................................................GACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAG...................................................................................................ATGGTTACAATGTTTGGGATGTCTGAGATTGGACCATGGGCGTTAACAGATCCAGCAGCACAAAGTGGCGATGTGGTGCTGAGAATGCTAGCGAGGAATCAAATGTCAGAGAAACTAGCAGAAGACATTGATGAATCTGTAAGGCACATAATCGAGAGAGCATATGAAATTGCAAAGAACCACATCAGGAACAACAGGGAGGCAATCGACAAATTAGTGGATGTCCTGCTGGAAAAGGAGACTCTTACAGGAGATGAGTTTAGAGCTATACTCTCAGAATTCACTGATATCCCATTCGTTAACATAAACAGAAAACCAATTAGAGAACTAATTGAGGCCTAGGTGAAATTACTTCCAATGTACAGCTGCAGAAACTAAATACCTTCACAAGATTTTACATGTTTAATGCAGTGCAGAAAGCAAGATCAATGTAATATAAATAGATAATCTTCATCAACTTTGTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395899" ref_strand="+" ref_description="SGN-E395899 [TUS-18-D21](-)">
      <seq>agcaactctttgctagaatagtgggaggcttaggaggtagagcagcagaggaaataatttttggtgaaccagaaatcactactggtgcagcaggagacttgcaacaaataactcaaatagcaagacaggtattcactcaagcacattttcttgttgcacctactaaagaaaacaacatagtcgaatactcacaagttttcacttgtcaatattcgcaacctgagcagatggttacaatgtttgggatgtctgagattggaccatgggcgttaacagatccagcagcacaaagtggcgatgtggtgctgagaatgctagcgaggaatcaaatgtcagagaaactagcagaagacattgatgaatctgtaaggcacataatcgagagagcatgaaattgcaaagaaccacatcaggaacaacagggaggcaatcgacaaattagtggatgtcctgctggaaaaggagactcttacaggagatgagtttagagctatactctcagaattcactgatatcccattcgttaacataaacagaaaaccaattagagaactaattgaggcctaggtgaaattacttccaatgtacagctgcagaaactaaataccttcacaagattttacatgtttaatgcagtgcagaaagcaagatcaatgtaatataaatagataatcttcatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="40032" stop="38749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39732" g_stop="39049" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="695"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E395899" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39732" e_stop="39049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTCTTGTTGCACCTACTAAAGAAAACAACATAGTCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTACAATGTTTGGGATGTCTGAGATTGGACCATGGGCGTTAACAGATCCAGCAGCACAAAGTGGCGATGTGGTGCTGAGAATGCTAGCGAGGAATCAAATGTCAGAGAAACTAGCAGAAGACATTGATGAATCTGTAAGGCACATAATCGAGAGAGCATATGAAATTGCAAAGAACCACATCAGGAACAACAGGGAGGCAATCGACAAATTAGTGGATGTCCTGCTGGAAAAGGAGACTCTTACAGGAGATGAGTTTAGAGCTATACTCTCAGAATTCACTGATATCCCATTCGTTAACATAAACAGAAAACCAATTAGAGAACTAATTGAGGCCTAGGTGAAATTACTTCCAATGTACAGCTGCAGAAACTAAATACCTTCACAAGATTTTACATGTTTAATGCAGTGCAGAAAGCAAGATCAATGTAATATAAATAGATAATCTTCATCAA</genome_strand>
        <mrna_strand>AGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTCTTGTTGCACCTACTAAAGAAAACAACATAGTCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTACAATGTTTGGGATGTCTGAGATTGGACCATGGGCGTTAACAGATCCAGCAGCACAAAGTGGCGATGTGGTGCTGAGAATGCTAGCGAGGAATCAAATGTCAGAGAAACTAGCAGAAGACATTGATGAATCTGTAAGGCACATAATCGAGAGAGC--ATGAAATTGCAAAGAACCACATCAGGAACAACAGGGAGGCAATCGACAAATTAGTGGATGTCCTGCTGGAAAAGGAGACTCTTACAGGAGATGAGTTTAGAGCTATACTCTCAGAATTCACTGATATCCCATTCGTTAACATAAACAGAAAACCAATTAGAGAACTAATTGAGGCCTAGGTGAAATTACTTCCAATGTACAGCTGCAGAAACTAAATACCTTCACAAGATTTTACATGTTTAATGCAGTGCAGAAAGCAAGATCAATGTAATATAAATAGATAATCTTCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288284" ref_strand="+" ref_description="SGN-E288284 [cLES-16-J7]">
      <seq>aaacctgatgaatgaagctgccattctagctggaaggagaggaaaagataagattacctcaaaagagatagatgattccatcgatagaattgtcgctggaatggaaggaactaccatgacagatggaaagaacaagattctggtagcataccatgaggttggacatgctgtctgcgcgacattgacccctggccatgatgcagtacagaaagtcacattgatcccaagaggtcaagctcgcggtcttacatggttcattcctggtgaagatccaaccttaatctctaagaagcaactctttgctagaatagtgggaggcttangaagtagagcagcagaggaaataatttttggtgaaccagaaatcactactggtgcagcaggagacttgcaacaaataactcaaatagcaagacagatggttacaatgtttgggatgtctgagattggaccatgggcgttaacagatccagcagcacaaagtggcgatgtggtgctgagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="40499" stop="39119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40199" g_stop="40023" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40022" i_stop="39846" i_length="177">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39845" g_stop="39605" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="418" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39604" i_stop="39506" i_length="99">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39505" g_stop="39419" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="505" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E288284" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40199" e_stop="40023"/>
          <exon e_start="39845" e_stop="39605"/>
          <exon e_start="39505" e_stop="39419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGCGTAAGTCAGCAATTCTTGCCCCTTTAATTGTTCTGTTGTTTGTTTTTCAACTAACATTAGGTGTTCAATAGGCCATGCCCTTAAATAAGGTGTCTAAATGAAATAACTGAACAAGTTTAGGAGTGAGCTCTTGTGATCAAAAGACAAGGTACTAAGAGTGAGCTCTTGTGCTTGTAGGACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTCTTGTTGCACCTACTAAAGAAAACAACATAGTCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTACAATGTTTGGGATGTCTGAGATTGGACCATGGGCGTTAACAGATCCAGCAGCACAAAGTGGCGATGTGGTGCTGAGAATG</genome_strand>
        <mrna_strand>AAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGC.................................................................................................................................................................................GACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTANGAAGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAG...................................................................................................ATGGTTACAATGTTTGGGATGTCTGAGATTGGACCATGGGCGTTAACAGATCCAGCAGCACAAAGTGGCGATGTGGTGCTGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395900" ref_strand="+" ref_description="SGN-E395900 [TUS-18-D21]">
      <seq>ttggactgcctgatataagaggaagagaagaaatattgaaagttcacagtaacaacaagaagcttgacaaagatgtgtctctaagtgttattgcaatgagaacaccaggattcagtggtgcagatcttgcaaacctgatgaatgaagctgccattctagctggaaggagaggaaaagataagattacctcaaaagagatagatgattccatcgatagaattgtcgctggaatggaaggaactaccatgacagatggaaagaacaagattctggtagcataccatgaggttggacatgctgtctgcgcgacattgacccctggccatgatgcagtacagaaagtcacattgatcccaagaggtcaagctcgcggtcttacatggttcattcctggtgaagatccaaccttaatctctaagaagcaactctttgctagaatagtgggaggcttaggaggtagagcagcagaggaaataatttttggtgaaccagaaatcactactggtgcagcaggagacttgcaacaaataactcaaatagcaagacaggtattcactcaagcacattttcttgttgcacctactaaagaaaacaacataatcgaatactcacaagttttcacttgtcaatattcgcaacctgagcagatggttacaatgtttgggatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="40629" stop="39181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40329" g_stop="40023" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40022" i_stop="39846" i_length="177">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39845" g_stop="39481" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="672" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E395900" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40329" e_stop="40023"/>
          <exon e_start="39845" e_stop="39481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTGCCTGATATAAGAGGAAGAGAAGAAATATTGAAAGTTCACAGTAACAACAAGAAGCTTGACAAAGATGTGTCTCTAAGTGTTATTGCAATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGCGTAAGTCAGCAATTCTTGCCCCTTTAATTGTTCTGTTGTTTGTTTTTCAACTAACATTAGGTGTTCAATAGGCCATGCCCTTAAATAAGGTGTCTAAATGAAATAACTGAACAAGTTTAGGAGTGAGCTCTTGTGATCAAAAGACAAGGTACTAAGAGTGAGCTCTTGTGCTTGTAGGACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTCTTGTTGCACCTACTAAAGAAAACAACATAGTCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTACAATGTTTGGGATGTCTG</genome_strand>
        <mrna_strand>TTGGACTGCCTGATATAAGAGGAAGAGAAGAAATATTGAAAGTTCACAGTAACAACAAGAAGCTTGACAAAGATGTGTCTCTAAGTGTTATTGCAATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGC.................................................................................................................................................................................GACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTCTTGTTGCACCTACTAAAGAAAACAACATAATCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTACAATGTTTGGGATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209219" ref_strand="+" ref_description="SGN-E209219 [cLEC-38-P22]">
      <seq>tactgcctgacttaagaggaagagaggaactcttgaaagttcacagtaacaacaagaagcttgacattagagaacatatatagggcaaagcggcgagaacacctgaattcagtggtgcagatctggcaaacctgatgaatgaagctgccattctagctggaaggagaggaaaagataagattacctcaaaagagatagatgattccatcgatagaattgtcgctggaatggaaggaactaccatgacagatggaaagaacaagattctggtagcataccatgaggttggacatgctgtctgcgcgacattgacccctggccatgatgcagtacagaaagtcacattgatcccaagaggtcaagctcgcggtcttacatggttcattcctggtgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="40625" stop="39452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40326" g_stop="40023" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40022" i_stop="39846" i_length="177">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39845" g_stop="39752" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="398" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E209219" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40326" e_stop="40023"/>
          <exon e_start="39845" e_stop="39752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCCTGATATAAGAGGAAGAGAAGAAATATTGAAAGTTCACAGTAACAACAAGAAGCTTGACAAAGATGTGTCTCTAAGTGTTATTGCAATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGCGTAAGTCAGCAATTCTTGCCCCTTTAATTGTTCTGTTGTTTGTTTTTCAACTAACATTAGGTGTTCAATAGGCCATGCCCTTAAATAAGGTGTCTAAATGAAATAACTGAACAAGTTTAGGAGTGAGCTCTTGTGATCAAAAGACAAGGTACTAAGAGTGAGCTCTTGTGCTTGTAGGACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGAT</genome_strand>
        <mrna_strand>TACTGCCTGACTTAAGAGGAAGAGAGGAACTCTTGAAAGTTCACAGTAACAACAAGAAGCTTGACATTAGAGAACATATATAGGGCAAAGCGGCGAGAACACCTGAATTCAGTGGTGCAGATCTGGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGC.................................................................................................................................................................................GACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332598" ref_strand="+" ref_description="SGN-E332598 [cTOD-18-M18]">
      <seq>aactgccttcaacttcccaaactgcaattcatagttcataagcacaaaaagcctaagtagaggaaaacaaaatgtctactgctctttctttgtctgtctctcagttccccctatgcaaatcccaagacttctccaaggatgtttacaatcctaaaatctccaataaagaaaccccatgtcagaaaacacattcagacaccagaataaacaggaggaagctgttgagtactagtggtttgagccttgtagcagggactttgtctaagccagcaagagctgagactgaagcaccagttgaggtaacttcaagtagaatgtcatattcaagattcttggattacttgaatcaaggtgctgtcaagaaagttgatttctttgagaacagtgctgttgctgagatattgatcaatcctgctcttaacaaagtccagagagttaaaattcagttgccaggattgccaccagaattggtgagaaaacttaaagacaagaatgtagattttgctgctcatctacctgaaaagaatgtaattggaccacttcttgatttgcttgggaatttagcttttccattgatattgcttggttatttactgttgagaagctcttcnaatacccctggaaggccaaacttgccttttggattangaaggagcaaagcccaaattcagatggaaccaaatacangagtaacatttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="42021" stop="40626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41721" g_stop="41070" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41069" i_stop="40978" i_length="92">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40977" g_stop="40926" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="704" r_length="52" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E332598" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41721" e_stop="41070"/>
          <exon e_start="40977" e_stop="40926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCCTTCAACTTCCCAAACTGCAATTCATAGTTCATAAGCACAAAAAGCCTAAGTAGAGGAAAACAAAATGTCTACTGCTCTTTCTTTGTCTGTCTCTCAGTTCCCCCTATGCAAATCCCAAGACTTCTCCAAGGATGTTTACAATCCTAAAATCTCCAATAAAGAAACCCCATGTCAGAAAACACATTCAGACACCAGAATAAACAGGAGGAAGCTGTTGAGTACTAGTGGTTTGAGCCTTGTAGCAGGGACTTTGTCTAAGCCAGCAAGAGCTGAGACTGAAGCACCAGTTGAGGTAACTTCAAGTAGAATGTCATATTCAAGATTCTTGGATTACTTGAATCAAGGTGCTGTCAAGAAAGTTGATTTCTTTGAGAACAGTGCTGTTGCTGAGATATTGATCAATCCTGCTCTTAACAAAGTCCAGAGAGTTAAAATTCAGTTGCCAGGATTGCCACCAGAATTGGTGAGAAAACTTAAAGACAAGAATGTAGATTTTGCTGCTCATCTACCTGAAAAGAATGTAATTGGACCACTTCTTGATTTGCTTGGGAATTTAGCTTTTCCATTGATATTGCTTGGTTATTTACTGTTGAGAAGCTCTTCAAATACCCCTGGAGGGCCAAACTTGCCTTTTGGATTAGGAAGGTATGCTGACTGGGAACTTATAAAAACATGATCAAGATTGAAACTTTATGTCTAATGGATTGATATGCTTAACTTGTTTGTGGACAATGCAGGAGCAAAGCCAAATTCCAGATGGAACCAAATACAGGAGTAACATTTGATGAT</genome_strand>
        <mrna_strand>AACTGCCTTCAACTTCCCAAACTGCAATTCATAGTTCATAAGCACAAAAAGCCTAAGTAGAGGAAAACAAAATGTCTACTGCTCTTTCTTTGTCTGTCTCTCAGTTCCCCCTATGCAAATCCCAAGACTTCTCCAAGGATGTTTACAATCCTAAAATCTCCAATAAAGAAACCCCATGTCAGAAAACACATTCAGACACCAGAATAAACAGGAGGAAGCTGTTGAGTACTAGTGGTTTGAGCCTTGTAGCAGGGACTTTGTCTAAGCCAGCAAGAGCTGAGACTGAAGCACCAGTTGAGGTAACTTCAAGTAGAATGTCATATTCAAGATTCTTGGATTACTTGAATCAAGGTGCTGTCAAGAAAGTTGATTTCTTTGAGAACAGTGCTGTTGCTGAGATATTGATCAATCCTGCTCTTAACAAAGTCCAGAGAGTTAAAATTCAGTTGCCAGGATTGCCACCAGAATTGGTGAGAAAACTTAAAGACAAGAATGTAGATTTTGCTGCTCATCTACCTGAAAAGAATGTAATTGGACCACTTCTTGATTTGCTTGGGAATTTAGCTTTTCCATTGATATTGCTTGGTTATTTACTGTTGAGAAGCTCTTCNAATACCCCTGGAAGGCCAAACTTGCCTTTTGGATTANGAAG............................................................................................GAGCAAAGCCCAAATTCAGATGGAACCAAATACANGAGTAACATTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367778" ref_strand="+" ref_description="SGN-E367778 [cLPT-14-L13]">
      <seq>aactaaaccataaaccacccaccaccgtcttcctccgccggaaaaccacctcagctgaatacgtagcctcaagaaaccgagaccccactttcgaaaaactcatggacaagtacaaaaacctcttcaaagtaatcgcaatacaagacctcatcctcggtacaaccaccaacgccgccgcacctcccgccgtctccctcgatttcctcaaccgcctatctcagcgcctccatctcaaccgcggcgccacccatttcctccgtaagtaccctcacatcttcaacattttccaccaccctatcaaattacaaccttattgtactctgacggaaaccgccctcaaaatcacccaacaagaagctacagctatcaatgctactttaccacttgtagtaacccgtttggttcgattattgtcgatgtcaatgactaaatcattgccccttagagccattttcaaggtttttagggaacttgggttgcctgatgactttgaggaaagtgtaatcttgaaaaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="47480" stop="46362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47180" g_stop="46662" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E367778" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47180" e_stop="46662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAACCATAAACCACCCACCACCGTCTTCCTCCGCCGGAAAACCACCTCAGCTGAATACGTAGCCTCAAGAAACCGAGACCCCACTTTCGAAAAACTCATGGACAAGTACAAAAACCTCTTCAAAGTAATCGCAATACAAGACCTCATCCTCGGTACAACCACCAACGCCGCCGCACCTCCCGCCGTCTCCCTCGATTTCCTCAACCGCCTATCCCAGCGCCTCCATCTCAACCGCGGCGCCACCCATTTCCTCCGTAAGTACCCTCACATCTTCAACATTTTCCACCACCCTATCAAATTACAACCTTATTGTACACTGACGGAAACCGCCCTCAAAATCACCCAACACGAAGCTACAGCTATCAATGCTACTTTACCACTTGTAGTAACCCGTTTGGTTCGTTTATTGTCGATGTCAGTGACTAAATCATTGCCCCTTAGAGCCATTTTCAAGGTTTTTAGGGAACTTGGGTTGCCTGATGACTTTGAGGAAAGTGTAATCTTGAAAAAATCTG</genome_strand>
        <mrna_strand>AACTAAACCATAAACCACCCACCACCGTCTTCCTCCGCCGGAAAACCACCTCAGCTGAATACGTAGCCTCAAGAAACCGAGACCCCACTTTCGAAAAACTCATGGACAAGTACAAAAACCTCTTCAAAGTAATCGCAATACAAGACCTCATCCTCGGTACAACCACCAACGCCGCCGCACCTCCCGCCGTCTCCCTCGATTTCCTCAACCGCCTATCTCAGCGCCTCCATCTCAACCGCGGCGCCACCCATTTCCTCCGTAAGTACCCTCACATCTTCAACATTTTCCACCACCCTATCAAATTACAACCTTATTGTACTCTGACGGAAACCGCCCTCAAAATCACCCAACAAGAAGCTACAGCTATCAATGCTACTTTACCACTTGTAGTAACCCGTTTGGTTCGATTATTGTCGATGTCAATGACTAAATCATTGCCCCTTAGAGCCATTTTCAAGGTTTTTAGGGAACTTGGGTTGCCTGATGACTTTGAGGAAAGTGTAATCTTGAAAAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745827" ref_strand="+" ref_description="SGN-E745827 [GI|47105043]">
      <seq>ggtccatcaaaggcactcaactttcttgaaatacttcgattttcttctttataccgagaaaaaaagctccggtgccggagaagaaatcggcggcaaacttccatcgacggcgcgtccttggtgtacattcttgaacaagaaaatggtttggggcctttttcctattgatcctcttccaggtgaagatagttactatttcttcaacgaaggtacatataaagtgggtcgaaaaggatgtgatgtcattgtcaacaaggataaaggagtttcaaggatacatgcagaaattttagtagatgagatgatttctttggatcagtcgaagaaaccctcaaatattctgtctaaagtacgtgtaagagactgctcaaagtatggcacattcctcaacaagaatctggattcgaaggagaaagttcatgagtttccaaataaagaaacgatgctcaaggatggcgatctagtttcatttggaactggtaatgcaacttacagattctcttacgtatcattcatatttttcatttgctccccgaagcattcaaaaacaaatcaacttattacaaagaaggtttcatcaataggtgcaagtataactaagaagtggagtttggattgctcacatgtgcttgtagatgactcctttcctctgagtgatgacctgattgatgctattgtcgctagaaaacccttggttcagtatagctgggtcgagctaattgcaggaaaaaatatttgcaccgatattccaagccacagttctcatgcaccaaagttgatgctggaaggagtttccgtgcaagtggtagatcctcaatcccgtgagtgttgtttgaaaggatatgcttttttgctggaaccagaaaacaagtataaatttgagggcaggttgcagtccttactggaagttgggggtgccaacatttcttcttctgaaatggactcggagaaaaatggaaatgaccgtgtggtatgtgtagttccagcaggatcaaacaactttaagtctttttctaaccaaagttccttgccttgggtgagtgaaatagatctggtttctgcggttctatccggatatctggatcctattcttatcacatccccaccggtgctcattacctcttcatgctccacagatgagacagtggttgcagactcagatgccgaaacagaaagtacaaaatcagatcacgtcgctgctgctttctgttcaatagaatcttctgagcatgacagcaagggaacaacttctatacacaagttagaatctgttgaatatcacaacgaagataagtgtactgttcaaatagagatgcctagggataaggtatccatgagggacacatctcccagttcaacaaaacatattaaacacgatggaagtcacataacacatgatgatgctaccatccatgacggcgaaggtggttacatcaggcgcctaggtgtcaaaagtgataatacagtggtaaaagaagatatcacggatcagcgggaaaatgggaagttggatatcatatatagccaagatttaattgttagagattctatcatgtcattaccagtctcttcttcatcaaatggcggagttgcaaattttaagcgcttccgtaaggcaaatgctccatcccagaatagctttgcaatcttcattccattctccaagcatccataccaagaatctgagtgtaagaatgaggatgttgctgaatctattagagaagagaaaaaaagaaaacagatggaagcaattgccaaggacctgtttaaaagtgaaaagggaaaaaaaagtggtgttgctggttccttgcatgggttgtttgctcgtagataatatgataccaaagatacagagatgtactggatcaaccatccaagacattttgttggtattcctagtttcttagcaaacactgtagatagacccctccttttcttttctccttgtatgaagatggggaagtcatcaagttctcttcaggatgaattttgttaagctattgtattgggtcattcttgaaactaaacttcagcgtccgtgggaaatcataggatttgcacccggcagttgattgtacatgatggtgttattcaagcttataaaaagttttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="49224" stop="62391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49523" g_stop="49701" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49702" i_stop="50875" i_length="1174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50876" g_stop="50929" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="233" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50930" i_stop="51513" i_length="584">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51514" g_stop="51775" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="495" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51776" i_stop="51884" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.320" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51885" g_stop="51973" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="584" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51974" i_stop="52627" i_length="654">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52628" g_stop="52758" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="715" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52759" i_stop="53873" i_length="1115">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53874" g_stop="53920" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="762" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53921" i_stop="54020" i_length="100">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54021" g_stop="54129" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="871" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54130" i_stop="54257" i_length="128">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54258" g_stop="54326" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="940" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54327" i_stop="55139" i_length="813">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="55140" g_stop="55308" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="941" r_stop="1109" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="55309" i_stop="56500" i_length="1192">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="56501" g_stop="57006" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1110" r_stop="1615" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="57007" i_stop="57547" i_length="541">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="57548" g_stop="57609" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1616" r_stop="1677" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="57610" i_stop="57692" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="57693" g_stop="57795" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1678" r_stop="1780" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="57796" i_stop="57881" i_length="86">
            <donor d_prob="0.754" d_score="0.98"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="57882" g_stop="57939" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1781" r_stop="1838" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="57940" i_stop="61812" i_length="3873">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="61813" g_stop="62091" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1839" r_stop="2117" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="62092" i_stop="62142" i_length="51">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="62143" g_stop="62147" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="2118" r_stop="2122" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E745827" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2122</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49523" e_stop="49701"/>
          <exon e_start="50876" e_stop="50929"/>
          <exon e_start="51514" e_stop="51775"/>
          <exon e_start="51885" e_stop="51973"/>
          <exon e_start="52628" e_stop="52758"/>
          <exon e_start="53874" e_stop="53920"/>
          <exon e_start="54021" e_stop="54129"/>
          <exon e_start="54258" e_stop="54326"/>
          <exon e_start="55140" e_stop="55308"/>
          <exon e_start="56501" e_stop="57006"/>
          <exon e_start="57548" e_stop="57609"/>
          <exon e_start="57693" e_stop="57795"/>
          <exon e_start="57882" e_stop="57939"/>
          <exon e_start="61813" e_stop="62091"/>
          <exon e_start="62143" e_stop="62147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCATCAAAGGCACTCAACTTTCTTGAAATACTTCGATTTTCTTCTTTATACCGAGAAAAAAAGCTCCGGTGCCGGAGAAGAAATCGGCGGCAAACTTCCATCGACGGCGCGTCCTTGGTGTACATTCTTGAACAAGAAAATGGTTTGGGGCCTTTTTCCTATTGATCCTCTTCCAGGTTCTATACAGGCTTCTCTTTACGTGTTGTTTCTTTCCTTAAAAATTACATGAACCACTAGAAGTTCACTTAACCCAGTAATCAAGAAAGCAATGATACTAAAAGTTCACTTGACCTAGTAACCAAGAAAGCAGTAATACTAAAAATTCACTTGACCTAGTAATCAAGAAAGCAATGGTACTAAATGTCACTTTTAGGATTGATATTAATTATTAATCAAGAAAGCAATTATTTAGCCCTCTTTTTTCTCTTTAAGTTTATGGAATATTAAGCACTCAAAAGGGTGTGACCAGTGATCAATGAATGAAATATTAATACCTCAAAAGGGTGTAAGACCTAGTGATCAATGAAATGGGAGGAGAGGAGAACCGTGATGTTTCAGGTTTAAAATTGCAGTGGAGGCAAAATTAGATGATTTCTTCCTGCATAAGCCATTGTGGGGCTGAGTTATGGTACTTGTGCTGTGAGTCCAGGATTATGTCTTTGTTTATGTTATTATGCCTATATTAGGTTTGGTCTGAGTAGAGGCTTGTATTTTTGTGTAGCACGATTTATAGAAACACTAGGTTTAGAGAACCTCCAAGTTTGTCTTAAAACACAAATTACACGTAGGTGTCTTGGCATAACAATAATTAATTTATATGAAAACCATGCGAGATCAGATTCAAATACTACTACTGGCAGACGAGGTTACATGATTTGTATGTAATTGTGTAAGTGGCACCTGTGCCACTGGGAGGTATTAGGTACCTAGTAGACTCTACTTTTTGAGGTGTGCGCATGTTGGTCTGGGGACCACCATATGTAAAGACAAATTCATTTTGTAGTATTGAAACCGAATGTGGCTGGATAAGCAGGATGGATATATAGATCAATATAGCTTAGACCCTACTAGTTGGGCTTTGAGGCACAATTGATTGAGGACTTATGTCCCATGAATAAACATATGCACGAACAATCAATTGTGTTAGTTATAGTTACAACACTACATTTCATGTATGAGCTAATTTTACTAATGTTGAAAGTTGAAGCAAGTCGTCCATGGCTTTTATTGATCGCATTTTGTTAATGACTTCTGTTGGTTTCATTTTAGACTAGAATTCTGGCTGATTTATCATGTTATTAACTTTGCTACTATCAATTGCTAATACACTGCTCTTTGTATATGCGGCAGGTGAAGATAGTTACTATTTCTTCAACGAAGGTACATATAAAGTGGGTCGAAAAGGTAATATTCTCAATTACGTACTCTCATAAAATCTCTCATAAAAAAAAATAGTGTCAAAAAAAATATGTACTCTCTTAAAAAATCTCATAAAGTTTTCTTAATATGTTTACTAATTCATTACAAGGAGTAACTTTTGAGTTTCCTCTCTTAGCTTGGTTACTCGCACTGTCACTGCTTCCTTTTTTGATTAATCTTGTTGATGAGATGACTTATATGTCACAATTTCTGATGTGATCCGTCTTCAGTCCAAGTTGTGGGTCATGACAATAGAGCATTTAACATGCCATAATTGGTTTGCTGATGGTCTGTTGTAATTAGGCTTAAAACATACTTTTCCTTTAACTGGTAACGAAATTCCTTCAAGACACACTCCTCCTTCACAGGCAAATTTTTACACACCGCGCTTGCTCAGCTGGCATGCATATTTTTTACCAGCTAATGAAGTGCGTGAACAAGGATTTTGCATCAGATGTATTATTAAGTAACATGTGTCAAAGTTTTATTACTAGTTATTTTTATCTTCTTCCTTACTTAGACCCACATTACTTCTGTCATGGACTTTCCTTAAATGTATTGTTTCACAGGATGTGATGTCATTGTCAACAAGGATAAAGGAGTTTCAAGGATACATGCAGAAATTTTAGTAGATGAGATGATTTCTTTGGATCAGTCGAAGAAACCCTCAAATATTCTGTCTAAAGTACGTGTAAGAGACTGCTCAAAGTATGGCACATTCCTCAACAAGAATCTGGATTCGAAGGAGAAAGTTCATGAGTTTCCAAATAAAGAAACGATGCTCAAGGATGGCGATCTAGTTTCATTTGGAACTGGTAATGCAACTTACAGGTGATTGAAGTTACATGTTGTGATTCTTACCTCCTACATAGTATTTCTTGTTAATTGTCCATCAATCCTATTGAACAAACATATTGATGTGATGATATTCATCAAACAGATTCTCTTACGTATCATTCATATTTTTCATTTGCTCCCCGAAGCATTCAAAAACAAATCAACTTATTACAAAGAAGGTTTCATCAATAGGTGAGTGATCATTTATGCTATGTACATAAAATATATGTTCAGACAGTTTATGCACTTTTGTGTTTCAGGCTACTTATAGTGTTACCAGTGTGATCTGTTGAATTCTTGATCTTGTTTAATTTTTTTGCTGTGCTAATTTCAAAATATTGTTTCCTATCCGGTGGAAAAAATGATGAATTTTAAAATAAAATAAAGATGTGATGGGAATTATACTAGTCTTTGATGCACAAATTGTGGTTAAATGACGAATACAACCAATTATTTTATACCTATTTTCTATTGGTGTTGTGGTCAAAAGGACCAAGAACTACTAGAGTATCAAAATATGTCCTCATACATAACCCTAGAAACCGGATTTGGTACTTGATTTACTGTAGACTGCAGTTACATTTAAAAGAATAAATACCTATATATTATCAAAAAAGAGTAAATGCCTATATATAATGTGCTTACAAGCATAGAAAGTATCTTGAATGCTTTCATGCATTTTAGGATGCCACAATCATAGTAGTCTAAAGTTGCAAAAGCACAAGGAACCTGTTAGGCTGTTATAGAGGGAATACCTAGATTATATTATAATCTCAATTCTTTTCATTATATGTATTTGTATGTTCAGAGGATGTCATATGCCTATTACTTTCAATCTCCTTGCAGGTGCAAGTATAACTAAGAAGTGGAGTTTGGATTGCTCACATGTGCTTGTAGATGACTCCTTTCCTCTGAGTGATGACCTGATTGATGCTATTGTCGCTAGAAAACCCTTGGTTCAGTATAGCTGGGTCGAGGTATTCTTGTATAAATTACCTAAGATTTTGCAAGTATAATTTGCCAATAAACATGTTTATTCGCATTTAGAGTAGCTGATATCTAGATACACAATGTAGTTCAAAGTAGTGATACTGTAACCAAATGTATACACATGACAATCCTTACACATAGATTTACTAATGTGAGGAATATGATTTAGTTGTTTTATGATTGTGCTTTACCTACCTTACATTATGTTAGATCTTTCCCTTTGTTATTTGAAGATTTGAGATAGTTTTCAATCTTCCAGAGAGATCCAAATAAACAGGCGGGTATCATTATGCGTGAACTTCATGATTGCAGTGATATAAACAATGATAGCATTATGCTTTTCTTTCAAATATTGTTCCATGACATCAGATAATCATCTGTCCCCTCTGCATCAGGAAATTTGTTAGTTATTGAGCCGTGCTATAATAGACTACTTTTCCCTTTCTTGTAGAAACGAGGAAATCTAGAAGGAGTACAAGTGTGGTCTGAAATACTATCTCTTTGCATTATGTTGGTTAAGAAGCCAAAGATTCTTTGAAGGAATTAATAATTCCCTACATAGCTTGCAATACTTTAGCTTACAGTTTCAGTTTTCTGGTGCAGCTTAACAAGCGTACATGATGTAAATGTTTTCTTGGATTTGTGGCTCCCTACCCTTTGAAAAGTGTCTTACATCTAGAAGAAGTACAACAGTAGTCTGATTTTTATTTTTTGTTTTGTTTTGAGAAAGGATGTAAAATATTCTTTCTGCATCATATGGGTAATATGGATTATGCATTATATGGGTTATCTAGAAGAGAATCCATATATTCTTTGGAGGAATTTGTTCAGCTTTCTGTTGCACCTTAATAAGATTTTCGTGGATTTTGTGGCTCCTATCTCTTTGATAAGGGACCTAAATCTTTGTACCTTTTGTAATTTTGAGTTCATAACTTCCTTCTCTGAGTTGTTGAAATGGATACTCTTTACTCATTCTGAAAACAGAAGAAAAATGAACTTAGCCCTTAGCTCTTCGATTTGTTGCATCATGCTTTTACAGTATTCAATCATGAAGAAATTAATTTTTCTTTTGTTTATTTAATTGGTTGGCTGTGAATTTCAGCTAATTGCAGGAAAAAATATTTGCACCGATATTCCAAGCCACAGTTCGTAAGTACTGTCTTAATATTAATCACATTATGCTTCTGAAATACATGTACAACATTTCTCTTTTGTATGCTGAAAAGATTAGTTGTGCCGTGTTACCCAGTCATGCACCAAAGTTGATGCTGGAAGGAGTTTCCGTGCAAGTGGTAGATCCTCAATCCCGTGAGTGTTGTTTGAAAGGATATGCTTTTTTGCTGGAACCAGAAAACAAGGTGATTGTTTTCTTAGTTTTTGCTGCTACTCTTTTGCATTGCATCAAGCAAGTCATGCAAGATGACTTGATTGAGAATTACTTAGATATTTTTGCTAGACTGAGATAAATTTTTCCCGTTCTTTGCAGTATAAATTTGAGGGCAGGTTGCAGTCCTTACTGGAAGTTGGGGGTGCCAACATTTCTTCTTCTGAAATGGTTTGTCCTAATGGTCTATGTTATTGTTGGCTGCTCTCCCTTCCCCATTTTCCTTGGTCTTCCTCTCTGCATCTTCTGTATAGCTCACCTCTTAAGATTGAACTAATTTGGTAAATCCTAGCATGTTTGAAAAGGTACATGGCACAACCTCTTGAATCATGTGTTTTCTAATGGATAGGGGGTCCAGTTCATAAATGGGAATGCTTGTTGGAAGGGGGGAGAATCTAAAACGGGAAAGCATTTTGAAGATGCAAATTGCCTAAACCAGCATATTAAAAACTCTCACTCACTTAAGTGCACCCTTGTTATCCTTTTCTCTTTTTCATTGGACTGGTAAACTGCAATTTTTTCACTTCTACCAGAATATGTTTACTTTAAGTGTAGTATATAGTTCTCAACAGTCAGCAAAGCGGTGGTAATTTTCTTGAGTTGATTCCATATTCTTAGTGGATAAGTGAAAAAGGTTAACGGAATGACAAATCAAGATAGAAGTGAAGGCATACAAGAGAAGAGGTCCTTATCCAAAAAGAGAGAAAAAGCGCATGGCCTACTATGGGAATGGTGGCAAGACATAGGCGGATGAGATTTTGGATTCATACAACTCCAAATATACTACATGAGTCTAGATTGAGTTGAATCACGCCTTTGCATTTCCTATTTTGTGATTGCTGCCAAGTTTCAATCTTTTCTATTTTGTGTGGTGGGGTTTATGGGGTGCTCATGGTTTTGCATACAAGGTAGATACTATTGAGCCACAGAAGATTGTGTACGTAGTAATGTTTAAACTCACTAGCTCATTTCATCTGCTTTTAGGTCTCGGAGAAAAATGGAAATGACCGTGTGGTATGTGTAGTTCCAGCAGGATCAAACAACTTTAAGTCTTTTTCTAACCAAAGTTCCTTGCCTTGGGTGAGTGAAATAGATCTGGTTTCTGCGGTTCTATCCGGATATCTGGATCCTATTCTTATCACATCCCCACCGGGTGAGTGTAGTATAAGCTTAGAATTTATTTCTTTCCTTGCACACGACATAACAATTGACTTTCTATGTACATAAATTTCTATTTTCTCCATTTCATGTCTTTGCTCACTCATGTTCACTTTCCTCCTTTCCTATCTCTTTCCCCCTTTAGATTTTGGTTTGGAACTTCTACCAGCAGATTCAAATTGCAAAACATGACATGTATTGAATTTACTAATTACATGCTCAGATATGGACCTCTAACTTGCAGTGGATCGCCATTTTGAAGTCTGGTCTGTGGTAATAAAAGTAAAAAACCTCGTGATGATTATTTGAGGTGGTCAAGGATCAGGTCATTTTATCACTGTGCATCTGTGCCTACTGTTGTGCAAAAGCAAATAAAAATTGCTTGTTAGAGTAGCCAAGAGATTTAAGAGTGTGGCTTTGGACTGGTTGATAATGTCAACTAATCGTGCAATAGAATTTCTCATAAAATCTTGCTCATTCTTGTTTAATGCTGGTTGAGTTGATTTTTAACTAGGGAACGATTCATTATTAGTACGACTAATGGATTCCCTTTAGATAGATAGAAACTGGCTACTCATGACCATGGTAATTGGTCATTGATCTTGCAGTTTGTAATGTCTTTCAACAATTGATTCTTGAAGCAGTCGCCTTAATTTCTCCAAATGAAAAAGTAAACTACCTTTGTAAGCTAGCTTTGATGTGACATATTAACTAAAAATGCAACAGTTTTTCTTTTCACAATAAGTTTTTTAATAATTTACAAAATCCCTGCTTTGTGTACCATTTGCTCAAAATGGATCCAAGAAGTTTCTTACACAAATAAATTGCTTGTGGATATGCTTGAATGCGTGGATACTGGATAACTTATTTTACTTTTCTGACTTCAAGAAGTACATGAGTAGAATTCATTTGTTTTGATGAAGTAGGTAGGATATATCACAACAGGCAGAAATCCTTTTGTGCAAATAATATAGAAGATGCAAAAAGGTTACAAAAGAAGTGAGAAATTCATTGAAGTCTTTATCAGGACATTCTGGTTCAACCCGGTGCTGATAAGATGTGCATTATTATGAATCTATGTGTTCTGCCAATTTTATCTCATATGCTGATAAGATGTGCATTGTTATGAATGTATGTTCTTTGCCAATTTTATCTTATATTCTTTACTAAATAATTGTCCTCTGCAGTGCTCATTACCTCTTCATGCTCCACAGATGAGACAGTGGTTGCAGACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTGTTAGAGATTCTATCATGTCATTACCAGTCTCTTCTTCATCAAATGGCGGAGTTGCAAATTTTAAGCGCTTCCGTAAGGTTTGTATCTATTACAGTGTCTTATATGAAGTATATTTTTATAACAGAGAATGGAAAATTCCCACTTCACTTTCTTCTTTAGCCTGCCTTCCCTTTGTTGCTGAAATATTAGACTTCCATCAGCATCAGAGTTCAGCTAGCAATTTCAGCTTGATCTTGTCCTGTTCTGTCTAAATTGGTATTGAAAAGTCTGATATAGACTATGATGATGATCCATGTGTCTGTTTTGCTGGTCTAATATGCAGTTGGTTCAGTAAAATTCTAGGTTTGATTTGATTGCTAGTCCAGGAAGCATATAAGTTTTTGTAGTCATAATATTGCTTAGTGAAGATTCTTACTAATTTTTTTTTTGCTTTCGAAAGTTCTCTGTAACTTTATTGCTTCTGTAAAGTACATTTAGTTATGTCCATGAATTGCAATTCTAAAATTGATGCATCTTCACTTTCAGTTTGGTTCCTCTTCTTCTTTGGTCAGTGGATTTGATTATTATGCTATATTCTAAATGCCAATTTTTGCTGTTCTTTTTGACCTATTTTTATAGGCAAATGCTCCATCCCAGAATAGCTTTGCAATCTTCATTCCATTCTCCAAGCATCCATACCAGTAAGCAGCTAAGTCTATCTCTGGTTTGTTTATAGTCTGTATTACATATCAGACTTTGATGTTGATCTGTGATCATATGGCAGAGAATCTGAGTGTAAGAATGAGGATGTTGCTGAATCTATTAGAGAAGAGAAAAAAAGAAAACAGATGGAAGCAATTGCCGAGGACCTGTTTAAAAGTGAAAAGGTCAGTAATATGACTTGTATTATTGCCGCAGCTAAAATCACAGGAAATACATCTCTCAAGCCAGTGCTTCTATTTCTCTATCACAGGGAAAAAAAAGTGGTGTTGCTGGTTCCTTGCATGGGTTGTTTGCTCGTAGATAATATGGTAAGTTTCTTTTCAGAGTTGAAGAACTATACCTTCTTTTCGTTAGTCTGCTAAGCACATGCAGCTTTTAGTCTGCAAAGCACATACAGCTTTGTACTTTGTGGAGGGAGTGAAAGGCTAGATGCTTTGAAGATAGAGGAAATTCCATTCAGAAGATCTGAATGGGTTGTTTACTTTTGTTATATTTTTGGTGCAAATAGAACTTTGTTAGTGACATTGAAACTGTTATAGATCTTATTGTATCCCTTAAGTACGGAAAAAATCTTTCTGTCTCTTGGGAAGGTTGTGCCTTCTTGGTGGTTTTATTTAATTATGATACAGCAAGCATTTCTTGAAAAGGCTCTGTTCGGCGTTCGTATGCATCAATTTCCTCATGCAGCGTAGCATCTTTGATGTAGGTCAGACGCAACATAGCAACGACATACCCCGTGTAGTCCCACAAGTGGGGTCTTAGGAAGGTAGGATGTACAAAAACCTTACTCCCACTCTTGTGGGGTAAAGAGTCTGTTTTTGATAAGATTAATATACCCTTGACTCAAAAGAGCAGATACTTGAAGCAGGGTTATTGGCAAAATATGACATCAAAGATCAACATACCAAGCTAATAAAATAACAGGTAGTAAAACACATTGAGAGATAAGAAACTACATGATTACTAAATACTACTGCCTCTGTCCCAATTTATATGACTTACTTTCCTTTTTAGTAAGTCCCAAAAAGAATGACATTTCTATATTAAGTAACAATTTAACTATAAAATGCCTATTTTACCCTTAATGTAATGATTTACAGCCATACAAATTTCTGTCATTCATTTTGGACCACAAGTTTTAAAAGTCTTCCTTTTTTTTAAAAAAAAATTCCGTGCCGAGTCAAACTACATCACATAAAATGGGACAGGGGCATAATAAGGTTGCGACGAGGAGATAGGGCTAACCCCCTGTCTCTCCTACTGAAAGGACGACAACCCTTGGCACACCTGCTAACCTTCTACCTTAATCTTCAATCTCAACATCTTCCTATCTATTCTGTCTAATCACCTCCCCTTGGTTATTCTTTGAACTGCCTCTACCTCTCTTAACTCGTATAACAACCAACTTCGCTCACACCTCCTTACTGGCGCATCCGCTTGCCTTCTCTTTCATGCATGCCCGAACCATTCCAACCTTGCTTCCCTTGTCATTTCTGCCATGGAGGCCACTCTAACCTTGTCCTGTAACTTCATTCCTAATCATATTTCTCCTAGTATGCCAACACATCCACACATTATTATCATTTTCCGAGACCAGAATGCAAACGGAATAACTCTTAAGTACAAGTGTTAACTTCTGTCAGCATCATATATAAGAAGTGTATCGTCAGGATAAACAACATATCCACACATTATTATCATTTTCCGAGACCAGAATGCAAACGGAATAACTCTTAAGTACAAGTGTTAACTTCTGTCAGCATCATATATAAGAAGTGTGTCGTCAGGATAAACAACATGAGTCTAGCAGATTCCTCTGCCATCTTTACCAGAAATGCAAAACCCTCCATTCCAGCTCAATTCTTCAGGTCTCTTAAGCATTATTCTTAGGGGTTCCATGACAATCACGAATAGATAAGGAGAGAGAGCGTCTCCTTGTCTTAGGCTCTTTTAGACTTAAAGAAGCCTTCGGTGCTTCCATTAATGTGAAGATGAAGTCTGACATTAGAGATGCAATTAAGGATCCACTGTATCCACCTATCCCTAAAAGTGCGCAAGTCATGACTTCCAATAGAAAATCAAATGCCTTTTCTAAATTACACTTGAATATTAATCCTGCCTTCCCGATTCTCAAGTAGTAGCAAAGACACTTTGCAATTAACGACACATCTAAAATTTGTCTACTTTAATTAAGGCATTTTGGTTGTCTGTAATGAGTTTGCTTATCTTATGTCTTCAATCTTTCGGCAAGCACCTTTGCAATGAGTTTGTAAATGGTACTAGGATGCTATAGGTCTAAAGTCATTAATCTCCATTTCCTCTTTCTCTTAAAGGGAGCTCTGAAAGTAGCAGTGAAACTCCTCTCAAATGTGCCTTCCTGATAATTTTTTTTCAATGTTTTCATTTATATCGGTCCTGTCAGTGGACCAACCTTTTTTGTAGAACATGTTAAATCCATCAGGTGCCAGGGGCTATATCCCCATCAAATTGCTTGTGTGCGTCCACTACATCTTCCTCTGTAAATGGCCTTTGAATCCACTTGCATTCTTTGACCCCACATTTTTGTCTTTCAGTAAAGAGCATCTCATAAAAGCTCTGAATGTGTTCTTTGATCAGCTTCTTGTCTCCAAACAATTTTCTTTCAACCTCAGTCTTGTTAATATCATTGTACTTCTCTGGGCATTGGCCATCTTGTGATAAAAAATTGTATGCTTAAAATCTTGATTTTTGTGTTCAAGGTATTTCCAAAGCCTCTGCAATTTCTTCCAGCTCATAAGACTACCTTTTTGTCTGCCTCTTTCAGCTTCATCTTCATTCACAGACTGAGCGATCCAGCTCCTCTAATTCGGAGAGGATGTTCTCTGCTTGTGTTTAAGCTTTCCAAATTCTTGCTCGTTCCATTCTCTAATGACTGCCTTGAGCAACTTAAGTTTTTTGGGAGGTAAGCACTTGAGACACAAATTAGAACAAAGAGAATTTTTTGTTGTAGAAAGTCTCAAATTCAGGATCTTCCTCTGCGAATTTCCTGAGAAACAAAGTCATGGGCACGTAGGTTCAGAGCTAGACCCAACTTCCTCTGTGAATTCAGGATCTTCCTCTGCAAATTTCTTCATGGTTGGTTTACTAGGGTAAAACGTGCCCCTTTCCACCTCTAAGTAGTGGTGTTGGTGTGTTTCGTGTTAATCATTCTTGGAAGATTTTCCTATATTAACTTTTGGCTGTATTGTTAAAATAATTCATAAGGTAGTAGAATAGTGGCTACAATTTGGATATGAATCTCATTTGATCACGTACTTAGGAGAAAACAAACTCAAGAACATGTTGTTTTCCATGTGGATTCTGACAAGAGTCAGAGTACTTTTGTATCACATGCATATGGTTTGTGTTTCTACTTTCACCCACATACATTTGATCTCAGTGTTTTAGGGTTAGTGAACTGAACTGAAGAGCTTGATAGAGGATCATTGGTATTGGCTCAACTGCAATTTTACATGCATGATGATTAGCTGCCTACAATGCGAGTTTCCAGAACTAGGATCAGCCTACTTATATAGAATAGAAGGGTTCTTTTTAGCCAATGGTTCTTGAAGTTTATCTGCCTACTGTTGCAATAAATATTATAATTACATAACGTATGCTATATTTCATTATGAGATTGGCGAACCTGTTTTACTTGCTTAGTATTTGCGAGACAAATTAAAAGCCAGGAGAGATGACTTGAATGGACAAAGTGTTGACCTGATGCTCAAGCATTTTTAAGCTGTTATCTGATGGTGGAAACAGATTTAGTCGGTTTTGTTAACAAATACAGCTGCATTTTGGTGTTATACTTGATCCCTGAAATCCTTAACAACAAAAAAGAAAAGAAGAAGTAAAAGGTCAAAGCTTAGTTTATATCCCTCTGTCTTAAGGGGAACAATCTCAGTAAATCGGGAGTTTTAAGTGCATCAGATGAGCAAGCTGCATTATGCAGAGATGGTATTGTGGTAGAGCTGCCTAACTCTTGGTTCCTAAGAGAGAAGGTTTGATGTTGGTTTGAGTTTGATGAACTGCCTTAAGCTTACTTGATGACTGTCCATCTAGGCTCTCCACAAACTCTAAAATTGTTTTGATTGATGCAATATTATATCAGTAGTATGATTTCTTCTTGTAATGCTAACACACCAATTTTGTGTTTCCAGATACCAAAGATACAGAGATGTACTGGATCAACCATCCAAGACATTTTGTTGGTATTCCTAGTTTCTTAGCAAACACTGTAGATAGACCCCTCCTTTTCTTTTCTCCTTGTATGAAGATGGGGAAGTCATCAAGTTCTCTTCAGGATGAATTTTGTTAAGCTATTGTATTGGGTCATTCTTGAAACTAAACTTCAGCGTCCGTGGGAAATCATAGGATTTGCACCCGGCAGTTGATTGTACATGATGGTGTTATTCAAGCTTATAAAAAGTTTTTTCAAAGTCGTTAACTTGTAGCTAGTGTGGTTTGGTTTAACTTGTGTTGCTTTGCAGAACTA</genome_strand>
        <mrna_strand>GGTCCATCAAAGGCACTCAACTTTCTTGAAATACTTCGATTTTCTTCTTTATACCGAGAAAAAAAGCTCCGGTGCCGGAGAAGAAATCGGCGGCAAACTTCCATCGACGGCGCGTCCTTGGTGTACATTCTTGAACAAGAAAATGGTTTGGGGCCTTTTTCCTATTGATCCTCTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGATAGTTACTATTTCTTCAACGAAGGTACATATAAAGTGGGTCGAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATGTCATTGTCAACAAGGATAAAGGAGTTTCAAGGATACATGCAGAAATTTTAGTAGATGAGATGATTTCTTTGGATCAGTCGAAGAAACCCTCAAATATTCTGTCTAAAGTACGTGTAAGAGACTGCTCAAAGTATGGCACATTCCTCAACAAGAATCTGGATTCGAAGGAGAAAGTTCATGAGTTTCCAAATAAAGAAACGATGCTCAAGGATGGCGATCTAGTTTCATTTGGAACTGGTAATGCAACTTACAG.............................................................................................................ATTCTCTTACGTATCATTCATATTTTTCATTTGCTCCCCGAAGCATTCAAAAACAAATCAACTTATTACAAAGAAGGTTTCATCAATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTATAACTAAGAAGTGGAGTTTGGATTGCTCACATGTGCTTGTAGATGACTCCTTTCCTCTGAGTGATGACCTGATTGATGCTATTGTCGCTAGAAAACCCTTGGTTCAGTATAGCTGGGTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTGCAGGAAAAAATATTTGCACCGATATTCCAAGCCACAGTTC....................................................................................................TCATGCACCAAAGTTGATGCTGGAAGGAGTTTCCGTGCAAGTGGTAGATCCTCAATCCCGTGAGTGTTGTTTGAAAGGATATGCTTTTTTGCTGGAACCAGAAAACAAG................................................................................................................................TATAAATTTGAGGGCAGGTTGCAGTCCTTACTGGAAGTTGGGGGTGCCAACATTTCTTCTTCTGAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGGAGAAAAATGGAAATGACCGTGTGGTATGTGTAGTTCCAGCAGGATCAAACAACTTTAAGTCTTTTTCTAACCAAAGTTCCTTGCCTTGGGTGAGTGAAATAGATCTGGTTTCTGCGGTTCTATCCGGATATCTGGATCCTATTCTTATCACATCCCCACCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCATTACCTCTTCATGCTCCACAGATGAGACAGTGGTTGCAGACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTGTTAGAGATTCTATCATGTCATTACCAGTCTCTTCTTCATCAAATGGCGGAGTTGCAAATTTTAAGCGCTTCCGTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGCTCCATCCCAGAATAGCTTTGCAATCTTCATTCCATTCTCCAAGCATCCATACCA...................................................................................AGAATCTGAGTGTAAGAATGAGGATGTTGCTGAATCTATTAGAGAAGAGAAAAAAAGAAAACAGATGGAAGCAATTGCCAAGGACCTGTTTAAAAGTGAAAAG......................................................................................GGAAAAAAAAGTGGTGTTGCTGGTTCCTTGCATGGGTTGTTTGCTCGTAGATAATATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAAAGATACAGAGATGTACTGGATCAACCATCCAAGACATTTTGTTGGTATTCCTAGTTTCTTAGCAAACACTGTAGATAGACCCCTCCTTTTCTTTTCTCCTTGTATGAAGATGGGGAAGTCATCAAGTTCTCTTCAGGATGAATTTTGTTAAGCTATTGTATTGGGTCATTCTTGAAACTAAACTTCAGCGTCCGTGGGAAATCATAGGATTTGCACCCGGCAGTTGATTGTACATGATGGTGTTATTCAAGCTTATAAAAAGTTTTTTCAAA...................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365603" ref_strand="+" ref_description="SGN-E365603 [cLPT-12-I23]">
      <seq>gatggcgatctagtttcatttggaactggtaatgcaacttacagattctcttacgtatcattcatatttttcatttgctccccgaagcattcaaaaacaaatcaacttattacaaagaaggtttcatcaataggtgcaagtataactaagaagtggagtttggattgctcacatgtgcttgtagatgactcctttcctctgagtgatgacctgattgatgctattgtcgctagaaaacccttggttcaatatagctgggtcgaggtattctttgtataaattacctaagattttgcaagtgtaatatgccaataaacatgtttattcgcatttagagtagctgatatctagatacagaatgtagttcaaagtagtgatactgtaaccaaatgtatacacatgacaatccttacacatagatttactaatgtgaggaatatgatttagttgttttacgattgtgctttacctaccttacattatgttagatctttctctttgttatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="51555" stop="53302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51732" g_stop="51775" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51776" i_stop="51884" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.320" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51885" g_stop="51973" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="133" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51974" i_stop="52627" i_length="654">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52628" g_stop="53002" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="509" r_length="376" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E365603" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51732" e_stop="51775"/>
          <exon e_start="51885" e_stop="51973"/>
          <exon e_start="52628" e_stop="53002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCGATCTAGTTTCATTTGGAACTGGTAATGCAACTTACAGGTGATTGAAGTTACATGTTGTGATTCTTACCTCCTACATAGTATTTCTTGTTAATTGTCCATCAATCCTATTGAACAAACATATTGATGTGATGATATTCATCAAACAGATTCTCTTACGTATCATTCATATTTTTCATTTGCTCCCCGAAGCATTCAAAAACAAATCAACTTATTACAAAGAAGGTTTCATCAATAGGTGAGTGATCATTTATGCTATGTACATAAAATATATGTTCAGACAGTTTATGCACTTTTGTGTTTCAGGCTACTTATAGTGTTACCAGTGTGATCTGTTGAATTCTTGATCTTGTTTAATTTTTTTGCTGTGCTAATTTCAAAATATTGTTTCCTATCCGGTGGAAAAAATGATGAATTTTAAAATAAAATAAAGATGTGATGGGAATTATACTAGTCTTTGATGCACAAATTGTGGTTAAATGACGAATACAACCAATTATTTTATACCTATTTTCTATTGGTGTTGTGGTCAAAAGGACCAAGAACTACTAGAGTATCAAAATATGTCCTCATACATAACCCTAGAAACCGGATTTGGTACTTGATTTACTGTAGACTGCAGTTACATTTAAAAGAATAAATACCTATATATTATCAAAAAAGAGTAAATGCCTATATATAATGTGCTTACAAGCATAGAAAGTATCTTGAATGCTTTCATGCATTTTAGGATGCCACAATCATAGTAGTCTAAAGTTGCAAAAGCACAAGGAACCTGTTAGGCTGTTATAGAGGGAATACCTAGATTATATTATAATCTCAATTCTTTTCATTATATGTATTTGTATGTTCAGAGGATGTCATATGCCTATTACTTTCAATCTCCTTGCAGGTGCAAGTATAACTAAGAAGTGGAGTTTGGATTGCTCACATGTGCTTGTAGATGACTCCTTTCCTCTGAGTGATGACCTGATTGATGCTATTGTCGCTAGAAAACCCTTGGTTCAGTATAGCTGGGTCGAGGTATTC-TTGTATAAATTACCTAAGATTTTGCAAGTATAATTTGCCAATAAACATGTTTATTCGCATTTAGAGTAGCTGATATCTAGATACACAATGTAGTTCAAAGTAGTGATACTGTAACCAAATGTATACACATGACAATCCTTACACATAGATTTACTAATGTGAGGAATATGATTTAGTTGTTTTATGATTGTGCTTTACCTACCTTACATTATGTTAGATCTTTCCCTTTGTTATTTGA</genome_strand>
        <mrna_strand>GATGGCGATCTAGTTTCATTTGGAACTGGTAATGCAACTTACAG.............................................................................................................ATTCTCTTACGTATCATTCATATTTTTCATTTGCTCCCCGAAGCATTCAAAAACAAATCAACTTATTACAAAGAAGGTTTCATCAATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTATAACTAAGAAGTGGAGTTTGGATTGCTCACATGTGCTTGTAGATGACTCCTTTCCTCTGAGTGATGACCTGATTGATGCTATTGTCGCTAGAAAACCCTTGGTTCAATATAGCTGGGTCGAGGTATTCTTTGTATAAATTACCTAAGATTTTGCAAGTGTAATATGCCAATAAACATGTTTATTCGCATTTAGAGTAGCTGATATCTAGATACAGAATGTAGTTCAAAGTAGTGATACTGTAACCAAATGTATACACATGACAATCCTTACACATAGATTTACTAATGTGAGGAATATGATTTAGTTGTTTTACGATTGTGCTTTACCTACCTTACATTATGTTAGATCTTTCTCTTTGTTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322448" ref_strand="+" ref_description="SGN-E322448 [cTOB-26-K13]">
      <seq>ccaacatttcttcttctgaaatggtctcggagaaaaatggaaatgaccgtgtggtatgtgtagttccagcaggatcaaacaactttaagtctttttctaaccaaagttccttgccttgggtgagtgaaatagatctggtttctgcggttctatccggatatctggatcctattcttatcacatccccaccggtgctcattacctcttcatgctccacagatgagacagtggttgcagactcagatgccgaaacagaaagtacaaaatcagatcacgtcgctgctgctttctgttcaatagaatcttctgagcatgacagcaagggaacaacttctatacacaagttagaatctgttgaatatcacaacgaagataagtgtactgttcaaatagagatgcctagggataaggtatccatganggacacatctcccagttcaacaaaacatattaaacacgatggaagtcacataacacatgatgatgctaccatccatgacggcgaaggtggttacatcangcgccctagtgtcaaaagtgataatacagtggtaaaagaagatatcacggatcagcgggaaaatgggaagttggatatcatatatagccaagattttattgnntagagatctatcatgtcattaccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="54004" stop="57257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54304" g_stop="54326" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54327" i_stop="55139" i_length="813">
            <donor d_prob="0.914" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55140" g_stop="55308" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="192" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55309" i_stop="56500" i_length="1192">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56501" g_stop="56957" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="649" r_length="457" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E322448" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54304" e_stop="54326"/>
          <exon e_start="55140" e_stop="55308"/>
          <exon e_start="56501" e_stop="56957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACATTTCTTCTTCTGAAATGGTTTGTCCTAATGGTCTATGTTATTGTTGGCTGCTCTCCCTTCCCCATTTTCCTTGGTCTTCCTCTCTGCATCTTCTGTATAGCTCACCTCTTAAGATTGAACTAATTTGGTAAATCCTAGCATGTTTGAAAAGGTACATGGCACAACCTCTTGAATCATGTGTTTTCTAATGGATAGGGGGTCCAGTTCATAAATGGGAATGCTTGTTGGAAGGGGGGAGAATCTAAAACGGGAAAGCATTTTGAAGATGCAAATTGCCTAAACCAGCATATTAAAAACTCTCACTCACTTAAGTGCACCCTTGTTATCCTTTTCTCTTTTTCATTGGACTGGTAAACTGCAATTTTTTCACTTCTACCAGAATATGTTTACTTTAAGTGTAGTATATAGTTCTCAACAGTCAGCAAAGCGGTGGTAATTTTCTTGAGTTGATTCCATATTCTTAGTGGATAAGTGAAAAAGGTTAACGGAATGACAAATCAAGATAGAAGTGAAGGCATACAAGAGAAGAGGTCCTTATCCAAAAAGAGAGAAAAAGCGCATGGCCTACTATGGGAATGGTGGCAAGACATAGGCGGATGAGATTTTGGATTCATACAACTCCAAATATACTACATGAGTCTAGATTGAGTTGAATCACGCCTTTGCATTTCCTATTTTGTGATTGCTGCCAAGTTTCAATCTTTTCTATTTTGTGTGGTGGGGTTTATGGGGTGCTCATGGTTTTGCATACAAGGTAGATACTATTGAGCCACAGAAGATTGTGTACGTAGTAATGTTTAAACTCACTAGCTCATTTCATCTGCTTTTAGGTCTCGGAGAAAAATGGAAATGACCGTGTGGTATGTGTAGTTCCAGCAGGATCAAACAACTTTAAGTCTTTTTCTAACCAAAGTTCCTTGCCTTGGGTGAGTGAAATAGATCTGGTTTCTGCGGTTCTATCCGGATATCTGGATCCTATTCTTATCACATCCCCACCGGGTGAGTGTAGTATAAGCTTAGAATTTATTTCTTTCCTTGCACACGACATAACAATTGACTTTCTATGTACATAAATTTCTATTTTCTCCATTTCATGTCTTTGCTCACTCATGTTCACTTTCCTCCTTTCCTATCTCTTTCCCCCTTTAGATTTTGGTTTGGAACTTCTACCAGCAGATTCAAATTGCAAAACATGACATGTATTGAATTTACTAATTACATGCTCAGATATGGACCTCTAACTTGCAGTGGATCGCCATTTTGAAGTCTGGTCTGTGGTAATAAAAGTAAAAAACCTCGTGATGATTATTTGAGGTGGTCAAGGATCAGGTCATTTTATCACTGTGCATCTGTGCCTACTGTTGTGCAAAAGCAAATAAAAATTGCTTGTTAGAGTAGCCAAGAGATTTAAGAGTGTGGCTTTGGACTGGTTGATAATGTCAACTAATCGTGCAATAGAATTTCTCATAAAATCTTGCTCATTCTTGTTTAATGCTGGTTGAGTTGATTTTTAACTAGGGAACGATTCATTATTAGTACGACTAATGGATTCCCTTTAGATAGATAGAAACTGGCTACTCATGACCATGGTAATTGGTCATTGATCTTGCAGTTTGTAATGTCTTTCAACAATTGATTCTTGAAGCAGTCGCCTTAATTTCTCCAAATGAAAAAGTAAACTACCTTTGTAAGCTAGCTTTGATGTGACATATTAACTAAAAATGCAACAGTTTTTCTTTTCACAATAAGTTTTTTAATAATTTACAAAATCCCTGCTTTGTGTACCATTTGCTCAAAATGGATCCAAGAAGTTTCTTACACAAATAAATTGCTTGTGGATATGCTTGAATGCGTGGATACTGGATAACTTATTTTACTTTTCTGACTTCAAGAAGTACATGAGTAGAATTCATTTGTTTTGATGAAGTAGGTAGGATATATCACAACAGGCAGAAATCCTTTTGTGCAAATAATATAGAAGATGCAAAAAGGTTACAAAAGAAGTGAGAAATTCATTGAAGTCTTTATCAGGACATTCTGGTTCAACCCGGTGCTGATAAGATGTGCATTATTATGAATCTATGTGTTCTGCCAATTTTATCTCATATGCTGATAAGATGTGCATTGTTATGAATGTATGTTCTTTGCCAATTTTATCTTATATTCTTTACTAAATAATTGTCCTCTGCAGTGCTCATTACCTCTTCATGCTCCACAGATGAGACAGTGGTTGCAGACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTG-TTAGAGATTCTATCATGTCATTACCAGT</genome_strand>
        <mrna_strand>CCAACATTTCTTCTTCTGAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGGAGAAAAATGGAAATGACCGTGTGGTATGTGTAGTTCCAGCAGGATCAAACAACTTTAAGTCTTTTTCTAACCAAAGTTCCTTGCCTTGGGTGAGTGAAATAGATCTGGTTTCTGCGGTTCTATCCGGATATCTGGATCCTATTCTTATCACATCCCCACCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCATTACCTCTTCATGCTCCACAGATGAGACAGTGGTTGCAGACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGANGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCANGCGCCCTAGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTTATTGNNTAGAGA-TCTATCATGTCATTACCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378990" ref_strand="+" ref_description="SGN-E378990 [TUS-1-H3]">
      <seq>cattttatcactgtgcatctgtgcctactgttgtgcaaaagcaaataaaaattgcttgttagagtagccaagagatttaagagtgtggctttggactggttgataatgtcaactaatcgtgcaatagaatttctcataaaatcttgctcattcttgtttaatgctggttgagttgatttttaactagggaacgattcattattagtacgactaatggattccctttagatagatagaaactggctactcatgaccatggtaattggtcattgatcttgcagtttgtaatgtctttcaacaattgattcttgaagcagtcgccttaatttctccaaatgaaaaagtaaactacctttgtaagctagctttgatgtgacatattaactaaaaatgcaacagtttttcttttcacaataagttttttaataatttacaaaatccctgctttgtgtaccatttgctcaaaatggatccaagaagtttcttacacaaataaattgcttgtggatatgcttgaatgcgtggatactggataacttattttacttttctgacttcaagaagtacatgagtagaattcatttgttttgatgaagtaggtaggatatatcacaacaggcagaaatccttttgtgncaataatatagaagatgcnaaaaggttacaaaagaagtgagaaattcattgaagtctttatcaggacattctggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="55341" stop="56652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55641" g_stop="56352" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E378990" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55641" e_stop="56352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTATCACTGTGCATCTGTGCCTACTGTTGTGCAAAAGCAAATAAAAATTGCTTGTTAGAGTAGCCAAGAGATTTAAGAGTGTGGCTTTGGACTGGTTGATAATGTCAACTAATCGTGCAATAGAATTTCTCATAAAATCTTGCTCATTCTTGTTTAATGCTGGTTGAGTTGATTTTTAACTAGGGAACGATTCATTATTAGTACGACTAATGGATTCCCTTTAGATAGATAGAAACTGGCTACTCATGACCATGGTAATTGGTCATTGATCTTGCAGTTTGTAATGTCTTTCAACAATTGATTCTTGAAGCAGTCGCCTTAATTTCTCCAAATGAAAAAGTAAACTACCTTTGTAAGCTAGCTTTGATGTGACATATTAACTAAAAATGCAACAGTTTTTCTTTTCACAATAAGTTTTTTAATAATTTACAAAATCCCTGCTTTGTGTACCATTTGCTCAAAATGGATCCAAGAAGTTTCTTACACAAATAAATTGCTTGTGGATATGCTTGAATGCGTGGATACTGGATAACTTATTTTACTTTTCTGACTTCAAGAAGTACATGAGTAGAATTCATTTGTTTTGATGAAGTAGGTAGGATATATCACAACAGGCAGAAATCCTTTTGTGCAAATAATATAGAAGATGCAAAAAGGTTACAAAAGAAGTGAGAAATTCATTGAAGTCTTTATCAGGACATTCTGGTT</genome_strand>
        <mrna_strand>CATTTTATCACTGTGCATCTGTGCCTACTGTTGTGCAAAAGCAAATAAAAATTGCTTGTTAGAGTAGCCAAGAGATTTAAGAGTGTGGCTTTGGACTGGTTGATAATGTCAACTAATCGTGCAATAGAATTTCTCATAAAATCTTGCTCATTCTTGTTTAATGCTGGTTGAGTTGATTTTTAACTAGGGAACGATTCATTATTAGTACGACTAATGGATTCCCTTTAGATAGATAGAAACTGGCTACTCATGACCATGGTAATTGGTCATTGATCTTGCAGTTTGTAATGTCTTTCAACAATTGATTCTTGAAGCAGTCGCCTTAATTTCTCCAAATGAAAAAGTAAACTACCTTTGTAAGCTAGCTTTGATGTGACATATTAACTAAAAATGCAACAGTTTTTCTTTTCACAATAAGTTTTTTAATAATTTACAAAATCCCTGCTTTGTGTACCATTTGCTCAAAATGGATCCAAGAAGTTTCTTACACAAATAAATTGCTTGTGGATATGCTTGAATGCGTGGATACTGGATAACTTATTTTACTTTTCTGACTTCAAGAAGTACATGAGTAGAATTCATTTGTTTTGATGAAGTAGGTAGGATATATCACAACAGGCAGAAATCCTTTTGTGNCAATAATATAGAAGATGCNAAAAGGTTACAAAAGAAGTGAGAAATTCATTGAAGTCTTTATCAGGACATTCTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201159" ref_strand="+" ref_description="SGN-E201159 [cLEC-10-J23]">
      <seq>cattttatcactgtgcatctgtgcctactgttgtgcaaaagcaaataaaaattgcttgttagagtagccaagagatttaagagtgtggctttggactggttgataatgtcaactaatcgtgcaatagaatttctcataaaatcttgctcattcttgtttaatgctggttgagttgatttttaactagggaacgattcattattagtacgactaatggattccctttagatagatagaaactggctactcatgaccatggtaattggtcattgatcttgcagtttgtaatgtctttcaacaattgattcttgaagcagtcgccttaatttctccaaatgaaaaagtaaactacctttgtaagctagctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="55341" stop="56312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55641" g_stop="56012" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E201159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55641" e_stop="56012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTATCACTGTGCATCTGTGCCTACTGTTGTGCAAAAGCAAATAAAAATTGCTTGTTAGAGTAGCCAAGAGATTTAAGAGTGTGGCTTTGGACTGGTTGATAATGTCAACTAATCGTGCAATAGAATTTCTCATAAAATCTTGCTCATTCTTGTTTAATGCTGGTTGAGTTGATTTTTAACTAGGGAACGATTCATTATTAGTACGACTAATGGATTCCCTTTAGATAGATAGAAACTGGCTACTCATGACCATGGTAATTGGTCATTGATCTTGCAGTTTGTAATGTCTTTCAACAATTGATTCTTGAAGCAGTCGCCTTAATTTCTCCAAATGAAAAAGTAAACTACCTTTGTAAGCTAGCTTTGAT</genome_strand>
        <mrna_strand>CATTTTATCACTGTGCATCTGTGCCTACTGTTGTGCAAAAGCAAATAAAAATTGCTTGTTAGAGTAGCCAAGAGATTTAAGAGTGTGGCTTTGGACTGGTTGATAATGTCAACTAATCGTGCAATAGAATTTCTCATAAAATCTTGCTCATTCTTGTTTAATGCTGGTTGAGTTGATTTTTAACTAGGGAACGATTCATTATTAGTACGACTAATGGATTCCCTTTAGATAGATAGAAACTGGCTACTCATGACCATGGTAATTGGTCATTGATCTTGCAGTTTGTAATGTCTTTCAACAATTGATTCTTGAAGCAGTCGCCTTAATTTCTCCAAATGAAAAAGTAAACTACCTTTGTAAGCTAGCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379629" ref_strand="+" ref_description="SGN-E379629 [TUS-1-H3](-)">
      <seq>ctgataagatgtgcattgttatgaatgtatgttctttgccaattttatcttatattctttactaaataattgtcctctgcagtgctcattacctcttcatgctccacagatgagacagtggttgcagactcagatgccgaaacagaaagtacaaaatcagatcacgtcgctgctgctttctgttcaatagaatcttctgagcatgacagcaagggaacaacttctatacacaagttagaatctgttgaatatcacaacgaagataagtgtactgttcaaatagagatgcctagggataaggtatccatgagggacacatctcccagttcaacaaaacatattaaacacgatggaagtcacataacacatgatgatgctaccatccatgacggcgaaggtggttacatcaggcgcctaggtgtcaaaagtgataatacagtggtaaaagaagatatcacggatcagcgggaaaatgggaagttggatatcatatatagccaagatttaattgttagagattctatcatgtcattaccagtctcttcttcatcaaatggcggagttgcaaattttaagcgcttccgtaaggcaaatgctccatcccagaatagctttgcaatcttcattccattctccaagcatccataccagtaagcagctaagtctatctctggtttgtttatagtctgtattacatatcagactttgaagttgatctgtgatcatatgtccgagaatcgaaagtaagaatgaggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="56119" stop="58019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56419" g_stop="57006" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57007" i_stop="57547" i_length="541">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57548" g_stop="57720" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="760" r_length="172" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E379629" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56419" e_stop="57006"/>
          <exon e_start="57548" e_stop="57720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATAAGATGTGCATTGTTATGAATGTATGTTCTTTGCCAATTTTATCTTATATTCTTTACTAAATAATTGTCCTCTGCAGTGCTCATTACCTCTTCATGCTCCACAGATGAGACAGTGGTTGCAGACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTGTTAGAGATTCTATCATGTCATTACCAGTCTCTTCTTCATCAAATGGCGGAGTTGCAAATTTTAAGCGCTTCCGTAAGGTTTGTATCTATTACAGTGTCTTATATGAAGTATATTTTTATAACAGAGAATGGAAAATTCCCACTTCACTTTCTTCTTTAGCCTGCCTTCCCTTTGTTGCTGAAATATTAGACTTCCATCAGCATCAGAGTTCAGCTAGCAATTTCAGCTTGATCTTGTCCTGTTCTGTCTAAATTGGTATTGAAAAGTCTGATATAGACTATGATGATGATCCATGTGTCTGTTTTGCTGGTCTAATATGCAGTTGGTTCAGTAAAATTCTAGGTTTGATTTGATTGCTAGTCCAGGAAGCATATAAGTTTTTGTAGTCATAATATTGCTTAGTGAAGATTCTTACTAATTTTTTTTTTGCTTTCGAAAGTTCTCTGTAACTTTATTGCTTCTGTAAAGTACATTTAGTTATGTCCATGAATTGCAATTCTAAAATTGATGCATCTTCACTTTCAGTTTGGTTCCTCTTCTTCTTTGGTCAGTGGATTTGATTATTATGCTATATTCTAAATGCCAATTTTTGCTGTTCTTTTTGACCTATTTTTATAGGCAAATGCTCCATCCCAGAATAGCTTTGCAATCTTCATTCCATTCTCCAAGCATCCATACCAGTAAGCAGCTAAGTCTATCTCTGGTTTGTTTATAGTCTGTATTACATATCAGACTTTGATGTTGATCTGTGATCATATGGCAGAGAATCTGAGTGTAAGAATGAGGATGTT</genome_strand>
        <mrna_strand>CTGATAAGATGTGCATTGTTATGAATGTATGTTCTTTGCCAATTTTATCTTATATTCTTTACTAAATAATTGTCCTCTGCAGTGCTCATTACCTCTTCATGCTCCACAGATGAGACAGTGGTTGCAGACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTGTTAGAGATTCTATCATGTCATTACCAGTCTCTTCTTCATCAAATGGCGGAGTTGCAAATTTTAAGCGCTTCCGTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGCTCCATCCCAGAATAGCTTTGCAATCTTCATTCCATTCTCCAAGCATCCATACCAGTAAGCAGCTAAGTCTATCTCTGGTTTGTTTATAGTCTGTATTACATATCAGACTTTGAAGTTGATCTGTGATCATATGTCCGAGAATC-GAAAGTAAGAATGAGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261287" ref_strand="+" ref_description="SGN-E261287 [cLEG-68-P22]">
      <seq>gctcagatgccgaaacagaaagtacaaaatcagatcacgtcgctgctgctttctgttcaatagaatcttctgagcatgacagcaagggaacaacttctatacacaagttagaatctgttgaatatcacaacgaagataagtgtactgttcaaatagagatgcctagggataaggtatccatgagggacacatctcccagttcaacaaaacatattaaacacgatggaagtcacataacacatgatgatgctaccatccatgacggcgaaggtggttacatcaggcgcctaggtgtcaaaagtgataatacagtggtaaaagaagatatcacggatcagcgggaaaatgggaagttggatatcatatatagccaagatttaattgttagagattctatcatgtcattaccagtctcttcttcatcaaatggcggagttgcaaattttaagcgcttccgtaaggcaaatgctccatcccagaatagctttgcaatcttcattccattctccaagcatccataccaagaatctgagtgtagaaatgaggatgttgctgaatctattagagaagagaaaaaaagaaaacagatggaagcaattgccgaggacctgtttaaaagtgaaaagggaaaaaaaagtggtgttgctggttccttgcatgggttgtttgctcgtaaataatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="56247" stop="58239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56546" g_stop="57006" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57007" i_stop="57547" i_length="541">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57548" g_stop="57609" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="523" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57610" i_stop="57692" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57693" g_stop="57795" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="626" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57796" i_stop="57881" i_length="86">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57882" g_stop="57939" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="684" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E261287" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56546" e_stop="57006"/>
          <exon e_start="57548" e_stop="57609"/>
          <exon e_start="57693" e_stop="57795"/>
          <exon e_start="57882" e_stop="57939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTGTTAGAGATTCTATCATGTCATTACCAGTCTCTTCTTCATCAAATGGCGGAGTTGCAAATTTTAAGCGCTTCCGTAAGGTTTGTATCTATTACAGTGTCTTATATGAAGTATATTTTTATAACAGAGAATGGAAAATTCCCACTTCACTTTCTTCTTTAGCCTGCCTTCCCTTTGTTGCTGAAATATTAGACTTCCATCAGCATCAGAGTTCAGCTAGCAATTTCAGCTTGATCTTGTCCTGTTCTGTCTAAATTGGTATTGAAAAGTCTGATATAGACTATGATGATGATCCATGTGTCTGTTTTGCTGGTCTAATATGCAGTTGGTTCAGTAAAATTCTAGGTTTGATTTGATTGCTAGTCCAGGAAGCATATAAGTTTTTGTAGTCATAATATTGCTTAGTGAAGATTCTTACTAATTTTTTTTTTGCTTTCGAAAGTTCTCTGTAACTTTATTGCTTCTGTAAAGTACATTTAGTTATGTCCATGAATTGCAATTCTAAAATTGATGCATCTTCACTTTCAGTTTGGTTCCTCTTCTTCTTTGGTCAGTGGATTTGATTATTATGCTATATTCTAAATGCCAATTTTTGCTGTTCTTTTTGACCTATTTTTATAGGCAAATGCTCCATCCCAGAATAGCTTTGCAATCTTCATTCCATTCTCCAAGCATCCATACCAGTAAGCAGCTAAGTCTATCTCTGGTTTGTTTATAGTCTGTATTACATATCAGACTTTGATGTTGATCTGTGATCATATGGCAGAGAATCTGAGTGTAAGAATGAGGATGTTGCTGAATCTATTAGAGAAGAGAAAAAAAGAAAACAGATGGAAGCAATTGCCGAGGACCTGTTTAAAAGTGAAAAGGTCAGTAATATGACTTGTATTATTGCCGCAGCTAAAATCACAGGAAATACATCTCTCAAGCCAGTGCTTCTATTTCTCTATCACAGGGAAAAAAAAGTGGTGTTGCTGGTTCCTTGCATGGGTTGTTTGCTCGTAGATAATATG</genome_strand>
        <mrna_strand>GCTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTGTTAGAGATTCTATCATGTCATTACCAGTCTCTTCTTCATCAAATGGCGGAGTTGCAAATTTTAAGCGCTTCCGTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGCTCCATCCCAGAATAGCTTTGCAATCTTCATTCCATTCTCCAAGCATCCATACCA...................................................................................AGAATCTGAGTGTAGAAATGAGGATGTTGCTGAATCTATTAGAGAAGAGAAAAAAAGAAAACAGATGGAAGCAATTGCCGAGGACCTGTTTAAAAGTGAAAAG......................................................................................GGAAAAAAAAGTGGTGTTGCTGGTTCCTTGCATGGGTTGTTTGCTCGTAAATAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370756" ref_strand="+" ref_description="SGN-E370756 [TUS-28-B8](-)">
      <seq>tcaccagggatgtgatcagcaaatcctgcatttcgatatcaaaccacaaaacatccttctagaccacaacttgaaccccaaaatatgtgattttggcctagccaaactgtgttctaaagaaaaaagtgcggtcactatgacagctgctaggggaaccattggttacattgcaccagaagtgttatcaagaaactttggtaaagtttctcataagtctgatatttatagctttgggatgctcttgttagaaatggttggtgggaggataaatatggatgctaagacgaataaccatagcaaagtgaattctttggaatggatatatagacatttggagaaaggggaagaattaaagattcagatagaggaagaaggagatggtagaattgtgagaaagttagctattgttggactttggtgcatacagtggcatccaattgataggccttcaatcaaagaagttactcagatgttggaaggagatggaagccatctcaacttgtccccaaatccttttatggctactgataagcctaagttaaatgcaagttctcacggtgaagatctagacgtgatattagaaattgaatagcacttcaaaatcatttctaaaagaattgcaaaagtattttatttcatagtagtgatcaggaagctgaatgataaatatgtagacttattaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="66005" stop="64718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65705" g_stop="65021" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E370756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65705" e_stop="65021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTCTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGAACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATAGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTAAAGATTCAGATAGAGGAAGAAGGAGATGGTAGAATTGTGAGAAAGTTAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCAATTGATAGGCCTTCAATCAAAGAAGTTACTCAGATGTTGGAAGGAGATGGAAGCCATCTCAACTTGTCCCCAAATCCTTTTATGGCTACTGATAAGCCTAAGTTAAATGCAAGTTCTCACGGTGAAGATCTAGACGTGATATTAGAAATTGAATAGCACTTCAAAATCATTTCTAAAAGAATTGCAAAAGTATTTTATTTCATAGTAGTGATCAGGAAGCTGAATGATAAATATGTAGACTTATTAATT</genome_strand>
        <mrna_strand>TCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTCTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGAACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATAGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTAAAGATTCAGATAGAGGAAGAAGGAGATGGTAGAATTGTGAGAAAGTTAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCAATTGATAGGCCTTCAATCAAAGAAGTTACTCAGATGTTGGAAGGAGATGGAAGCCATCTCAACTTGTCCCCAAATCCTTTTATGGCTACTGATAAGCCTAAGTTAAATGCAAGTTCTCACGGTGAAGATCTAGACGTGATATTAGAAATTGAATAGCACTTCAAAATCATTTCTAAAAGAATTGCAAAAGTATTTTATTTCATAGTAGTGATCAGGAAGCTGAATGATAAATATGTAGACTTATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279957" ref_strand="+" ref_description="SGN-E279957 [cLER-8-H19]">
      <seq>gggattgagtgtcttcaccagggatgtgatcagcaaatcctgcatttcgatatcaaaccacaaaacatccttctagaccacaacttgaaccccaaaatatgtgattttggcctagccaaactgtgttctaaagaaaaaagtgcggtcactatgacagctgctaggggaaccattggttacattgcaccagaagtgttatcaagaaactttggtaaagtttctcataagtctgatatttatagctttgggatgctcttgttagaaatggttggtgggaggataaatatggatgctaagacgaataaccatagcaaagtgaattctttggaatggatatatagacatttggagaaaggggaagaattaaagattcagatagaggaagaaggagatggtagaattgtgagaaagttagctattgttggactttggtgcatacagtggcatccaattgataggccttcaatcaaagaagttactcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="66019" stop="64935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65719" g_stop="65235" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E279957" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65719" e_stop="65235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGAGTATCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTCTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGAACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATAGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTAAAGATTCAGATAGAGGAAGAAGGAGATGGTAGAATTGTGAGAAAGTTAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCAATTGATAGGCCTTCAATCAAAGAAGTTACTCAGAT</genome_strand>
        <mrna_strand>GGGATTGAGTGTCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTCTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGAACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATAGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTAAAGATTCAGATAGAGGAAGAAGGAGATGGTAGAATTGTGAGAAAGTTAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCAATTGATAGGCCTTCAATCAAAGAAGTTACTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200720" ref_strand="+" ref_description="SGN-E200720 [cLEC-9-C21]">
      <seq>taatgtggtccgtttggttggtttttgtgctgatggattcagacgagctctgatctacgaatacctaccaaatgattcacttgaaaggtttattttaccagtaagctcaagcccgggtagtgtttcactcatcagctggcacaagcttcaccatattgctctgggtactgcaagagggattgagtatcttcaccagggatgtgatcagcaaatcctgcatttcgatatcaaaccacaaaacatccttctagaccacaacttgaaccccaaaatatgtgattttggcctagccaaactgtgttctaaagaaaaaagtgcggtcactatgacagctgctaggggaaccattggttacattgcaccagaagtgttatcaagaaactttggtaaagtttctcataagtctgatatttatagctttgggatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="66194" stop="65165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65894" g_stop="65465" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E200720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65894" e_stop="65465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTGGTCCGTTTGGTTGGTTTTTGTGCTGATGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTAAGCTCAAGCCCGGGTAGTGTTTCACTCATCAGCTGGCACAAGCTTCACCATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTCTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGAACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTC</genome_strand>
        <mrna_strand>TAATGTGGTCCGTTTGGTTGGTTTTTGTGCTGATGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTAAGCTCAAGCCCGGGTAGTGTTTCACTCATCAGCTGGCACAAGCTTCACCATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTCTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGAACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370757" ref_strand="+" ref_description="SGN-E370757 [TUS-28-B8]">
      <seq>ctcgtgccgtggaaactcattgtttcaatcgaaaagatataacccgaacaggtactacttgcatatcttaattaattttttccatcattatttaaaaaacacttaacagacactttttatttttgtccataataggtaacaacactaagcagcacttgattgcaggtgtagtttcaggtgcagcgcttgtttgcattattgtcttctcactttataagctatacctgacaagtagaaacaaaagagagagtcgagttagacttgaaaagtttttggatgactacaaggccatcagaccaacacgatattcttatgctgatattaagaaggtaacagatgattttaatgaaaagttaggagaagggagttatggaactgtatacaaaggcaaactttccagtgacatctatgttgcagtaaaagtcctacgcgattccaagggtaaaggggaagaatttatcaatgaaattgatacgattgggagaatccaccatgttaatgtggtccgtttggttggtttttgtgctgatggattcagacgagctctgatctacgaatacctaccaaatgattcacttgaaaggtttattttaccagtaagctcaagcccgggtagtgtgtcactcatcagctggcacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="66773" stop="65449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66473" g_stop="66318" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="165" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66317" i_stop="66226" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66225" g_stop="65749" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="642" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E370757" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66473" e_stop="66318"/>
          <exon e_start="66225" e_stop="65749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAGGTACTACTTGCATATCTTAATTAATTTTTTCCATCATTATTTAAAAAACACTTAACAGACACTTTTTATTTTTGTCCATAATAGGTAACAACACTAAGCAGCACTTGATTGCAGGTTAGTTTTATTAACTTCTTACTCCATCAGTTTCCTACTTTGATTTTCCTTTATGCTTATGACATGTTGTTTATTCAATTCAATTATTGTAGGTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACAAGGCCATCAGACCAACACGATATTCTTATGCTGATATTAAGAAGGTAACAGATGATTTTAATGAAAAGTTAGGAGAAGGGAGTTATGGAACTGTATACAAAGGCAAACTTTCCAGTGACATCTATGTTGCAGTAAAAGTCCTACGCGATTCCAAGGGTAAAGGGGAAGAATTTATCAATGAAATTGATACGATTGGGAGAATCCACCATGTTAATGTGGTCCGTTTGGTTGGTTTTTGTGCTGATGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTAAGCTCAAGCCCGGGTAGTGTTTCACTCATCAGCTGGCACAAGC</genome_strand>
        <mrna_strand>TGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAGGTACTACTTGCATATCTTAATTAATTTTTTCCATCATTATTTAAAAAACACTTAACAGACACTTTTTATTTTTGTCCATAATAGGTAACAACACTAAGCAGCACTTGATTGCAG............................................................................................GTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACAAGGCCATCAGACCAACACGATATTCTTATGCTGATATTAAGAAGGTAACAGATGATTTTAATGAAAAGTTAGGAGAAGGGAGTTATGGAACTGTATACAAAGGCAAACTTTCCAGTGACATCTATGTTGCAGTAAAAGTCCTACGCGATTCCAAGGGTAAAGGGGAAGAATTTATCAATGAAATTGATACGATTGGGAGAATCCACCATGTTAATGTGGTCCGTTTGGTTGGTTTTTGTGCTGATGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTAAGCTCAAGCCCGGGTAGTGTGTCACTCATCAGCTGGCACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378106" ref_strand="+" ref_description="SGN-E378106 [TUS-21-H6]">
      <seq>acccatactcaaactcaacatttggtgagaacatgctacatctgaattggaatgttccactctgtggaaactgtgagtataaaggaatggattgtggtttcaaggacggaacaaagctattggaaactcattgtttcaatcgaaaagatataacccgaacaggtaacaacactaagcaacacttgattgcaggtgttgtttcaggtgcagcgcttgattgcattattgtcttctgactttataagctatacctgacaagtagaaacaaaatagagagtcgagttagacttgaaaagtttttggatgactacaaggccatcaaaccaacacgatattcttatgctgatattaagaaggtaacagatgattttaatgaaaagttaggagaagggagttatggaactgtatacaaaggcaaactttccagtgacatctatgttgcagtaaaagtcctacgcgattccaagggtaaaggggaagaatttatcaatgaaattgatacgattgggagaatccaccatgttaatgtggtccgtttggttggtttttgtgcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="66893" stop="65560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66593" g_stop="66432" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66431" i_stop="66348" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66347" g_stop="66318" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="192" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66317" i_stop="66226" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66225" g_stop="65860" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="559" r_length="367" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E378106" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66593" e_stop="66432"/>
          <exon e_start="66347" e_stop="66318"/>
          <exon e_start="66225" e_stop="65860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATACTCAGACTCAACATTTGGTGAGAACATGCTACAGCTGAATTGGAATGTACCACTCTGTGGAAACTGTGAGTTCAAAGGAATGGATTGTGGTTTCAAGGACGGAACAAAGCTATTGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAGGTACTACTTGCATATCTTAATTAATTTTTTCCATCATTATTTAAAAAACACTTAACAGACACTTTTTATTTTTGTCCATAATAGGTAACAACACTAAGCAGCACTTGATTGCAGGTTAGTTTTATTAACTTCTTACTCCATCAGTTTCCTACTTTGATTTTCCTTTATGCTTATGACATGTTGTTTATTCAATTCAATTATTGTAGGTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACAAGGCCATCAGACCAACACGATATTCTTATGCTGATATTAAGAAGGTAACAGATGATTTTAATGAAAAGTTAGGAGAAGGGAGTTATGGAACTGTATACAAAGGCAAACTTTCCAGTGACATCTATGTTGCAGTAAAAGTCCTACGCGATTCCAAGGGTAAAGGGGAAGAATTTATCAATGAAATTGATACGATTGGGAGAATCCACCATGTTAATGTGGTCCGTTTGGTTGGTTTTTGTGC-TGATG</genome_strand>
        <mrna_strand>ACCCATACTCAAACTCAACATTTGGTGAGAACATGCTACATCTGAATTGGAATGTTCCACTCTGTGGAAACTGTGAGTATAAAGGAATGGATTGTGGTTTCAAGGACGGAACAAAGCTATTGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAG....................................................................................GTAACAACACTAAGCAACACTTGATTGCAG............................................................................................GTGTTGTTTCAGGTGCAGCGCTTGATTGCATTATTGTCTTCTGACTTTATAAGCTATACCTGACAAGTAGAAACAAAATAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACAAGGCCATCAAACCAACACGATATTCTTATGCTGATATTAAGAAGGTAACAGATGATTTTAATGAAAAGTTAGGAGAAGGGAGTTATGGAACTGTATACAAAGGCAAACTTTCCAGTGACATCTATGTTGCAGTAAAAGTCCTACGCGATTCCAAGGGTAAAGGGGAAGAATTTATCAATGAAATTGATACGATTGGGAGAATCCACCATGTTAATGTGGTCCGTTTGGTTGGTTTTTGTGCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236591" ref_strand="+" ref_description="SGN-E236591 [cLED-13-F11]">
      <seq>cagtacccatactcagactcaacatttggtgagaacatgctacagctgaattggaatgtaccactctgtggaaactgtgagttcaaaggaatggattgtggtttcaaggacggaacaaagctattggaaactcattgtttcaatcgaaaagatataacccgaacaggtaacaacactaagcagcacttgattgcaggtgtagtttcaggtgcagcgcttgtttgcattattgtcttctcactttataagctatacctgacaagtagaaacaaaagagagagtcgagttagacttgaaaagtttttggatgactacaaggccatcagaccaacacgatattcttatgctgatattaagaaggtaacagatgattttaatgaaaagttaggagaagggagttatggaactgtatacaaaggcaaactttccagtgacatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="66897" stop="65680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66597" g_stop="66432" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66431" i_stop="66348" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66347" g_stop="66318" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="196" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66317" i_stop="66226" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66225" g_stop="65980" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="442" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E236591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66597" e_stop="66432"/>
          <exon e_start="66347" e_stop="66318"/>
          <exon e_start="66225" e_stop="65980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACCCATACTCAGACTCAACATTTGGTGAGAACATGCTACAGCTGAATTGGAATGTACCACTCTGTGGAAACTGTGAGTTCAAAGGAATGGATTGTGGTTTCAAGGACGGAACAAAGCTATTGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAGGTACTACTTGCATATCTTAATTAATTTTTTCCATCATTATTTAAAAAACACTTAACAGACACTTTTTATTTTTGTCCATAATAGGTAACAACACTAAGCAGCACTTGATTGCAGGTTAGTTTTATTAACTTCTTACTCCATCAGTTTCCTACTTTGATTTTCCTTTATGCTTATGACATGTTGTTTATTCAATTCAATTATTGTAGGTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACAAGGCCATCAGACCAACACGATATTCTTATGCTGATATTAAGAAGGTAACAGATGATTTTAATGAAAAGTTAGGAGAAGGGAGTTATGGAACTGTATACAAAGGCAAACTTTCCAGTGACATCTATG</genome_strand>
        <mrna_strand>CAGTACCCATACTCAGACTCAACATTTGGTGAGAACATGCTACAGCTGAATTGGAATGTACCACTCTGTGGAAACTGTGAGTTCAAAGGAATGGATTGTGGTTTCAAGGACGGAACAAAGCTATTGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAG....................................................................................GTAACAACACTAAGCAGCACTTGATTGCAG............................................................................................GTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACAAGGCCATCAGACCAACACGATATTCTTATGCTGATATTAAGAAGGTAACAGATGATTTTAATGAAAAGTTAGGAGAAGGGAGTTATGGAACTGTATACAAAGGCAAACTTTCCAGTGACATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270667" ref_strand="+" ref_description="SGN-E270667 [cLEM-6-C14]">
      <seq>ctcgtgccgtggaaactcattgtttcaatcgaaaagatataacccgaacaggtactacttgcatatcttaattaattttttccatcattatttaaaaaacacttaacagacactttttatttttgtccataataggtaacaacactaagcagcacttgattgcaggtgtagtttcaggtgcagcgcttgtttgcattattgtcttctcactttataagctatacctgacaagtagaaacaaaagagagagtcgagttagacttgaaaagtttttggatgactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="66773" stop="65806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66473" g_stop="66318" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="165" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66317" i_stop="66226" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66225" g_stop="66106" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="285" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E270667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66473" e_stop="66318"/>
          <exon e_start="66225" e_stop="66106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAGGTACTACTTGCATATCTTAATTAATTTTTTCCATCATTATTTAAAAAACACTTAACAGACACTTTTTATTTTTGTCCATAATAGGTAACAACACTAAGCAGCACTTGATTGCAGGTTAGTTTTATTAACTTCTTACTCCATCAGTTTCCTACTTTGATTTTCCTTTATGCTTATGACATGTTGTTTATTCAATTCAATTATTGTAGGTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACA</genome_strand>
        <mrna_strand>TGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAGGTACTACTTGCATATCTTAATTAATTTTTTCCATCATTATTTAAAAAACACTTAACAGACACTTTTTATTTTTGTCCATAATAGGTAACAACACTAAGCAGCACTTGATTGCAG............................................................................................GTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365814" ref_strand="+" ref_description="SGN-E365814 [cLPT-8-E4]">
      <seq>aaaacattgtggctatgatcctggctttgaactacactgtaacaataaagatgacaccatccttgagcttccaccgtctgttcacttagttgttgaaaagattgattatgtctcacagcaaattcacctttatgatcctgaccagtgcttaccagccaagctaccaaaactgaatttgtcacaattcaatttgaaaaatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="67258" stop="66458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66958" g_stop="66755" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E365814" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66958" e_stop="66755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATTGTGGCTATGATCCTGGCTTTGAACTACACTGTAACACTAAAGGTGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTTGGTGTTGAAAATATTGATTATGTCTCACAGCAAATTCACCTTTATGATCCTGACCAGTGCATAGCAGCCAAGCTACCAAAACTGAATTTGTCACAATCTAATTTCACAAATGATGA</genome_strand>
        <mrna_strand>AAAACATTGTGGCTATGATCCTGGCTTTGAACTACACTGTAACAATAAAGATGACACCATCCTTGAGCTTCCACCGTCTGTTCACTTAGTTGTTGAAAAGATTGATTATGTCTCACAGCAAATTCACCTTTATGATCCTGACCAGTGCTTACCAGCCAAGCTACCAAAACTGAATTTGTCACAATTCAATTTGAAAAATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539666" ref_strand="+" ref_description="SGN-E539666 [TUS-59-I18](-)">
      <seq>cccgggctgcaggtaatgtgaggtctcagctgttgtagtacagaaatgtctaaggatacttctctgctaaaatattcaacattaatcctcatctttctgcaaacatgcaatgcttggaagatgaagcccgattactgttatccgaagaccccttctgcttgtggtcatatccgagacatcagctacccttttcacttaaacagtgacccagaaatttgtggagatgatccgaaatttgaatttagttgtgaagataaccaaacggttatgtcgatcctctccaagaagctgtatgtgcaagccatcaactataatagtaagacaattcacctggtagatccagctttacaaacacaagatgatctatgctctttcagtcctcagcttctgttcttcgaccaatccgatacaatcttccgatcatactatagtgggcttagatcagcagagcccattttcatgttcaactgtccatctgctgttaatagttcttcgacatttctggaaattagtggctgcaaattaagcaggtacacttatttaaagattggagaaacgaaagtctctgaagtcagccatggatgcagaatggaatttatagccatgacctcattgcctgatattaaaaacgcagagaataacatttcccattctgatttgagcttttctttattcgctctccgcgtgattttgaagagtaaggacaatcttcagttatataggctctgcttcttaataatcatttcttttccatcctaacaaattaggaaaacaatggatatattcactcactacaatttcatttcttcatgtctttgtagttgtgcttgattggattcgatgtgaggactcaaacttttctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="72256" stop="70798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71952" g_stop="71093" g_length="860"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="876" r_length="860" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E539666" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71952" e_stop="71093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGGTCTCAGCTGTTGTAGTACAGAAATGTCTAAGGATACCTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGCGTGATTTTGAAGAGTAAGGACAATCTTCAGTTATATAGGCTCTGCTTCTTAATAATCATTTCTTTTCCATCCTAACAAATTAGGAAAACAATGGATATATTCACTCACTACAATTTCATTTCTTCATGTCTTTGTAGTTGTGCTTGATTGGATTCGATGTGAGGACTCAAACTTTTCTCTACATAGACTTTT</genome_strand>
        <mrna_strand>TGTGAGGTCTCAGCTGTTGTAGTACAGAAATGTCTAAGGATACTTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGCGTGATTTTGAAGAGTAAGGACAATCTTCAGTTATATAGGCTCTGCTTCTTAATAATCATTTCTTTTCCATCCTAACAAATTAGGAAAACAATGGATATATTCACTCACTACAATTTCATTTCTTCATGTCTTTGTAGTTGTGCTTGATTGGATTCGATGTGAGGACTCAAACTTTTCTCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283600" ref_strand="+" ref_description="SGN-E283600 [cLES-1-G13](-)">
      <seq>tcgaccaatccgatacaatcttccgatcatactatagtgggcttagatcagcagagcccattttcatgttcaactgtccatctgctgttaatagttcttcgacatttctggaaattagtggctgcaaattaagcaggtacacttatttaaagattggagaaacgaaagtctctgaagtcagccatggatgcagaatggaatttatagccatgacctcattgcctgatattaaaaacgcagagaataacatttcccattctgatttgagcttttctttattcgctctccgcgtgattttgaagagtaaggacaatcttcagttatataggctctgcttcttaataatcatttcttttccatcctaacaaattaggaaaacaatggatatattcactcactacaatttcatttcttcatgtctttgtagttgtgcttgattggattcgatgtgaggactcaaacttttctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="71874" stop="70798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71574" g_stop="71094" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E283600" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71574" e_stop="71094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGCGTGATTTTGAAGAGTAAGGACAATCTTCAGTTATATAGGCTCTGCTTCTTAATAATCATTTCTTTTCCATCCTAACAAATTAGGAAAACAATGGATATATTCACTCACTACAATTTCATTTCTTCATGTCTTTGTAGTTGTGCTTGATTGGATTCGATGTGAGGACTCAAACTTTTCTCTACATAGACTTT</genome_strand>
        <mrna_strand>TCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGCGTGATTTTGAAGAGTAAGGACAATCTTCAGTTATATAGGCTCTGCTTCTTAATAATCATTTCTTTTCCATCCTAACAAATTAGGAAAACAATGGATATATTCACTCACTACAATTTCATTTCTTCATGTCTTTGTAGTTGTGCTTGATTGGATTCGATGTGAGGACTCAAACTTTTCTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539668" ref_strand="+" ref_description="SGN-E539668 [TUS-59-I18]">
      <seq>taattgtgaggtctcagctgttgtagtacagaaatgtctaaggatacctctctgctaaaatattcaacattaatcctcatctttctgcaaacatgcaatgcttggaagatgaagcccgattactgttatccgaagaccccttctgcttgtggtcatatccgagacatcagctacccttttcacttaaacagtgacccagaaatttgtggagatgatccgaaatttgaatttagttgtgaagataaccaaacggttatgtcgatcctctccaagaagctgtatgtgcaagccatcaactataatagtaagacaattcacctggtagatccagctttacaaacacaagatgatctatgctctttcagtcctcagcttctgttcttcgaccaatccgatacaatcttccgatcatactatagtgggcttagatcagcagagcccattttcatgttcaactgtccatctgctgttaatagttcttcgacatttctggaaattagtggctgcaaattaagcaggtacacttatttaaagattggagaaacgaaagtctctgaagtcagccatggatgcagaatggaatttatagccatgacctcattgcctgatattaaaaacgcagagaataacatttcccattctgatttgagcttttctttattcgctctccgcgtgattttgaagagtaaggacaatcttcagttatataggctctgcttcttaataatcatttcttttccatccctacaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="72256" stop="70904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71956" g_stop="71204" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E539668" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71956" e_stop="71204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGTGAGGTCTCAGCTGTTGTAGTACAGAAATGTCTAAGGATACCTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGCGTGATTTTGAAGAGTAAGGACAATCTTCAGTTATATAGGCTCTGCTTCTTAATAATCATTTCTTTTCCATCCTAACAAATT</genome_strand>
        <mrna_strand>TAATTGTGAGGTCTCAGCTGTTGTAGTACAGAAATGTCTAAGGATACCTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGCGTGATTTTGAAGAGTAAGGACAATCTTCAGTTATATAGGCTCTGCTTCTTAATAATCATTTCTTTTCCATCCCTACAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215152" ref_strand="+" ref_description="SGN-E215152 [cLEC-78-N4]">
      <seq>aatgtctaaggatacctctctgctaaaatattcaacattaatcctcatctttctgcaaacatgcaatgcttggaagatgaagcccgattactgttatccgaagaccccttctgcttgtggtcatatccgagacatcagctacccttttcacttaaacagtgacccagaaatttgtggagatgatccgaaatttgaatttagttgtgaagataaccaaacggttatgtcgatcctctccaagaagctgtatgtgcaagccatcaactataatagtaagacaattcacctggtagatccagctttacaaacacaagatgatctatgctctttcagtcctcagcttctgttcttcgaccaatccgatacaatcttccgatcatactatagtgggcttagatcagcagagcccattttcatgttcaactgtccatctgctgttaatagttcttcgacatttctggaaattagtggctgcaaattaagcaggtacacttatttaaagattggagaaacgaaagtctctgaagtcagccatggatgcagaatggaatttatagccatgacctcattgcctgatattaaaaacgcagagaataacatttcccattctgatttgagcttttctttattcgctctccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="72224" stop="70985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71924" g_stop="71285" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E215152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71924" e_stop="71285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCTAAGGATACCTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGC</genome_strand>
        <mrna_strand>AATGTCTAAGGATACCTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283599" ref_strand="+" ref_description="SGN-E283599 [cLES-1-G13]">
      <seq>aattgtgaggtctcagctgttgtagtacagaaatgtctaaggatacctctctgctaaaatattcaacattaatcctcatctttctgcaaacatgcaatgcttggaagatgaagcccgattactgttatccgaagaccccttctgcttgtggtcatatccgagacatcagctacccttttcacttaaacagtgacccagaaatttgtggagatgatccgaaatttgaatttagttgtgaagataaccaaacggttatgtcgatcctctccaagaagctgtatgtgcaagccatcaactataatagtaagacaattcacctggtagatccagctttacaaacacaagatgatctatgctctttcagtcctcagcttctgttcttcgaccaatccgatacaatcttccgatcatactatagtgggcttagatcagcagagcccattttcatgttcaactgtccatctgctgttaatagttcttcgacatttctggaaattagtggctgcaaattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="72255" stop="71142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71955" g_stop="71442" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E283599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71955" e_stop="71442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGAGGTCTCAGCTGTTGTAGTACAGAAATGTCTAAGGATACCTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAG</genome_strand>
        <mrna_strand>AATTGTGAGGTCTCAGCTGTTGTAGTACAGAAATGTCTAAGGATACCTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546393" ref_strand="+" ref_description="SGN-E546393 [TUS-69-L19](-)">
      <seq>tcaacatattgctctgggtactgcaagagggattgagtatcttcaccagggatgtgatcagcaaatcctgcatttcgatatcaaaccacaaaacatccttttagaccacaacttgaaccccaaaatatgtgattttggcctagccaaactgtgttctaaagaaaaaagtgcggtcactatgacagctgctaggggtaccattggttacattgcaccagaagtgttatcaagaaactttggtaaagtttctcataagtctgatatttatagctttgggatgctcttgttagaaatggttggtgggaggataaatatggatgctaagacgaataaccattgcaaagtgaattctttggaatggatatatagacatttggagaaaggggaagaattgaagattcggatagaggaagaaggagatgctacaatcgtgagaaaaatagctattgttggactttggtgcatacagtggcatcccgttgataggccttcaataaaagaagttactcagatgctggaaggagatgggagccatcttaacttgtccccaaatccttttatggctactgataagcctaagttaaatgcaattcctctcagtgaagatctagacgtgatattagaaattaaataacacttccaagtcatttgtataatgaaaaggaaatagtgtaagaattgcaaaagtattttgtttcatagtaataaggaagctgaatgatacacatttagtcttatttctcgatttgtatgcattagatccttacattgaaaccaaaagaaatgtcagttgttttctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="73728" stop="72327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73428" g_stop="72626" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="803" r_length="803" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="804" polyA_stop="815"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E546393" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73428" e_stop="72626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGCGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCTTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGATCACTATGACAGCTGCTAGGGGTACCATTGGTTACATTGCACCAGAAGTGTTGTCAAGAAACTTTTGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATTGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATCGAAGATTCGGATAGAGGAAGAAGGAGATGCTACAATTGTGAGAAAAATAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCCGTTGATAGGCCTTCAATAAAAGAAGTTACTCAGATGCTGGAAGGAGATGGGAGCCATCTTAACTTGTCCCCAAATCCTTTTATGGCTACTGATAAGCCTAAGTTAAATGCAAGTCCTCACGGTGAAGATCTAGACGTGATATTAGAAATTAAATAACACTTCAAAGTCATTTGTATAATGAAAAGGAATTAGTGTAAGAATTGCAAAAGTATTTTGTTTCATAGTAATAAGGAAGCTGAATGATACACATTTAGTCTTATTTCTCGATTTGTATGCATTAGATCCTTACATTGAAACCAAAAGAAATGTCAGTTGTTTTCTCAAG</genome_strand>
        <mrna_strand>TCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGTACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATTGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTGAAGATTCGGATAGAGGAAGAAGGAGATGCTACAATCGTGAGAAAAATAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCCGTTGATAGGCCTTCAATAAAAGAAGTTACTCAGATGCTGGAAGGAGATGGGAGCCATCTTAACTTGTCCCCAAATCCTTTTATGGCTACTGATAAGCCTAAGTTAAATGCAATTCCTCTCAGTGAAGATCTAGACGTGATATTAGAAATTAAATAACACTTCCAAGTCATTTGTATAATGAAAAGGAAATAGTGTAAGAATTGCAAAAGTATTTTGTTTCATAGTAATAAGGAAGCTGAATGATACACATTTAGTCTTATTTCTCGATTTGTATGCATTAGATCCTTACATTGAAACCAAAAGAAATGTCAGTTGTTTTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252960" ref_strand="+" ref_description="SGN-E252960 [cLEG-25-K22]">
      <seq>caagtacgggtagtgtctcagtcatcagctggaacaagcttcaacatattgctctgggtactgcaagagggattgagtatcttcaccagggatgcgatcagcaaatcctgcatttcgatatcaaaccacaaaacatccttttagaccacaacttgaaccccaaaatatgtgattttggcttagccaaactgtgttctaaagaaaaaagtgcgatcactatgacagctgctaggggtaccattggttacattgcaccagaagtgttgtcaagaaacttttgtaaagtttctcataagtctgatatttatagctttgggatgctcttgttagaaatggttggtgggaggataaatatggatgctaagacgaataaccattgcaaagtgaattctttggaatggatatatagacatttggagaaaggggaagaattgaagattcggatagaggaagaaggagatgctacaattgtgagaaaaatagctattgttggactttggtgcatacagtggcatcccgttgataggccttcaataaaagaagttactcanatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="73768" stop="72612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73468" g_stop="72912" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E252960" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73468" e_stop="72912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTACGGGTAGTGTCTCAGTCATCAGCTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGCGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCTTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGATCACTATGACAGCTGCTAGGGGTACCATTGGTTACATTGCACCAGAAGTGTTGTCAAGAAACTTTTGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATTGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATCGAAGATTCGGATAGAGGAAGAAGGAGATGCTACAATTGTGAGAAAAATAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCCGTTGATAGGCCTTCAATAAAAGAAGTTACTCAGATGCTG</genome_strand>
        <mrna_strand>CAAGTACGGGTAGTGTCTCAGTCATCAGCTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGCGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCTTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGATCACTATGACAGCTGCTAGGGGTACCATTGGTTACATTGCACCAGAAGTGTTGTCAAGAAACTTTTGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATTGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTGAAGATTCGGATAGAGGAAGAAGGAGATGCTACAATTGTGAGAAAAATAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCCGTTGATAGGCCTTCAATAAAAGAAGTTACTCANATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358363" ref_strand="+" ref_description="SGN-E358363 [cLHT-28-F12]">
      <seq>ttaacgtggtccgcttagttggtttttgtgctgatggattcagacgagctctgatctacgaatacctaccaaatgattcacttgaaaggtttattttaccagtgagctcaagtacgggtagtgtctcagtcatcagctggaacaagcttcaacatattgctctgggtactgcaagagggattgagtatcttcaccagggatgtgatcagcaaatcctgcatttcgatatcaaaccacaaaacatccttttagaccacaacttgaaccccaaaatatgtgattttggcctagccaaactgtgttctaaagaaaaaagtgcggtcactatgacagctgctaggggtaccattggttacattgcaccagaagtgttatcaagaaactttggtaaagtttctcataagtctgatatttatagctttgggatgctcttgttagaaatggttggtgggaggataaatatggatgctaagacgaataaccattgcaaagtgaattctttggaatggatatatagacatttggagaaaggggaagaattgaagattcggatagaggaagaaggagatgctacaatcgtgagaaaaatagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="73876" stop="72683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73576" g_stop="72983" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E358363" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73576" e_stop="72983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGTGGTCCTCTTACTTGGTTTTTGTGCTGACGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTGAGCTCAAGTACGGGTAGTGTCTCAGTCATCAGCTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGCGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCTTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGATCACTATGACAGCTGCTAGGGGTACCATTGGTTACATTGCACCAGAAGTGTTGTCAAGAAACTTTTGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATTGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATCGAAGATTCGGATAGAGGAAGAAGGAGATGCTACAATTGTGAGAAAAATAGCTA</genome_strand>
        <mrna_strand>TTAACGTGGTCCGCTTAGTTGGTTTTTGTGCTGATGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTGAGCTCAAGTACGGGTAGTGTCTCAGTCATCAGCTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGTACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATTGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTGAAGATTCGGATAGAGGAAGAAGGAGATGCTACAATCGTGAGAAAAATAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253072" ref_strand="+" ref_description="SGN-E253072 [cLEG-25-K12]">
      <seq>ctggaacaagcttcaacatattgctctgggtactgcaagaaggattgagtatcttcaccagggatgcgatcagcaaatcctgcatttcgatatcaaaccacaaaacatccttttggaccacaacttgaaccccaaaatatgtgattttggcttatccaaactgtgttctaaagaaaaaagtgcgatcactatgacagctgcttagggtaccattggttacattgcaccataagtgttgtcaagaaacttttggaaagtttctcataagtctgatatttatagctttgggatgctcttgttagaaatggttggtgggaggataaatatggatgctaggacgaataaccattgcgaagtgaattctttggaatggatatattgacatttggagaaaggggaagaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="73740" stop="72735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73440" g_stop="73035" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E253072" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73440" e_stop="73035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGCGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCTTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGATCACTATGACAGCTGCTAGGGGTACCATTGGTTACATTGCACCAGAAGTGTTGTCAAGAAACTTTTGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATTGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATCG</genome_strand>
        <mrna_strand>CTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAAGGATTGAGTATCTTCACCAGGGATGCGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTGGACCACAACTTGAACCCCAAAATATGTGATTTTGGCTTATCCAAACTGTGTTCTAAAGAAAAAAGTGCGATCACTATGACAGCTGCTTAGGGTACCATTGGTTACATTGCACCATAAGTGTTGTCAAGAAACTTTTGGAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAGGACGAATAACCATTGCGAAGTGAATTCTTTGGAATGGATATATTGACATTTGGAGAAAGGGGAAGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358365" ref_strand="+" ref_description="SGN-E358365 [cLHT-28-H14]">
      <seq>acctaccaaatgattcacttgaaaggtttattttaccagtgagctcaagtacgggtagtgtctcagtcatcagctggaacaagcttcaacatattgctctgggtactgcaagagggattgagtatcttcaccagggatgtgatcagcaaatcctgcatttcgatatcaaaccacaaaacatccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="73813" stop="73028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73513" g_stop="73328" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E358365" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73513" e_stop="73328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTGAGCTCAAGTACGGGTAGTGTCTCAGTCATCAGCTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGCGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTT</genome_strand>
        <mrna_strand>ACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTGAGCTCAAGTACGGGTAGTGTCTCAGTCATCAGCTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549357" ref_strand="+" ref_description="SGN-E549357 [TUS-69-K19]">
      <seq>aaatgtccatcttacttttcttgctatttatcccatcgctcagcttaggacaaagactagagggttgtgaggattcttggtgcaagagtcatggtcccatcgttcattttccgttcagactcagtcatcagccaaaacattgtggctatcctggctttgaactacactgtaacaataaagatgacaccatccttgagcttccctcctctgttcacttacttgttgaaaagattgattatgtctcacagaaaattcacctttatgatcctgaccagtgcttaccagccaagctaccaaaactgaatttgtcacaattcaatttgaaaaatgagtactatcccatggtcctattaaattgttcagcaccattagcagatagtgatgacttcgttccttgtcttagttcttctggttacaaagtttatgctgtttatgagacttatcacctcaacttcttcttgtctgagccttgcacaaaaattcatcactacccttacgcatggtacacatttagggagaacaaactgcagctgaattggtctataccactctgtaggagctgtgagttcaaaggaatggattgtggcttcaaggatgaaataaaacaattggaaactcattgtttcaatcgaacagctataaaccaaaaaggtatgaaatctaagaagcccttggttgcaggtgtagttttaggtacagcgcttgtttgcattatttccttcttactttataagctatatttgacaagtagaaatgaaagagagagtcgagttagacttgaaaagtttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="75068" stop="73495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74768" g_stop="74114" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74113" i_stop="74028" i_length="86">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.119" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74027" g_stop="73998" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="681" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73997" i_stop="73907" i_length="91">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73906" g_stop="73795" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="793" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E549357" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74768" e_stop="74114"/>
          <exon e_start="74027" e_stop="73998"/>
          <exon e_start="73906" e_stop="73795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTCCATCTTACTTTTCTTGCTATTTATCCCATCGCTTAGCTTAGGACAGAGACTAGAGGGCTGTGAGGATTCTTGGTGCAAGAGTCATGGTCCCATCGTTCATTTTCCGTTCAGACTCAGTCATCAGCCAAAACATTGTGGCTATCCTGGCTTTGAACTACACTGTAACACTAAAGGTGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTTGGTGTTGAAAAGATTGATTATGTCTCACAGAAAATTCACCTTTATGATCCTGACCAGTGCTTACCAGCCAAGCTACCAAAACTGAATTTTTCACAATTCAATTTGAAAAATGAATACTTACCCATGGTCCTATTAAATTGTTCCGCACCATTACCAGATACTATTCATGACTTCGTTCCTTGTCTTAGTTCTTCTGCTTACAAAGTTTATGCTGTTTATGAGTTTGATCACCTCAACCTCTTCTTGTCTGAGCCTTGCACAAAAATTCATCACTACCCTTACGCATGGTACACATTTAGGGAGAACAAACTGCAGCTGAATTGGTCTATACCACTCTGTAGGAGCTGTGAGTTCAAAGGAATGGATTGTGGCTTCAAGGATGAAATAAAACAATTGGAAACTCAATTGTTTCAATCGAACAGCTATAACCCCAACAGGTACTACTTGTATGTCTTCATTAATTTTTTCCCTCATTATTAAAGAAGCACTTAACATATATACACTTTCATTTTGTCCATAATAGATATGAAATCTAAGATGTCCTTGGTTGCAGGTTAGTATGATTAAGTTCTCACTCCATCAGTTTCCTACTTGATTTTCCTTTATGCTTATGACATGTTATTTATTCAATTCAATTTTTGTAGGTGTAGTTTTAGGTACAGCGCTTGTTTGCATTATTGCCTTCTTACGTTATACGCTATATTTGACAAGTAGAAATAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGA</genome_strand>
        <mrna_strand>AAATGTCCATCTTACTTTTCTTGCTATTTATCCCATCGCTCAGCTTAGGACAAAGACTAGAGGGTTGTGAGGATTCTTGGTGCAAGAGTCATGGTCCCATCGTTCATTTTCCGTTCAGACTCAGTCATCAGCCAAAACATTGTGGCTATCCTGGCTTTGAACTACACTGTAACAATAAAGATGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTACTTGTTGAAAAGATTGATTATGTCTCACAGAAAATTCACCTTTATGATCCTGACCAGTGCTTACCAGCCAAGCTACCAAAACTGAATTTGTCACAATTCAATTTGAAAAATGAGTACTATCCCATGGTCCTATTAAATTGTTCAGCACCATTAGCAG--A-TAGTGATGACTTCGTTCCTTGTCTTAGTTCTTCTGGTTACAAAGTTTATGCTGTTTATGAGACTTATCACCTCAACTTCTTCTTGTCTGAGCCTTGCACAAAAATTCATCACTACCCTTACGCATGGTACACATTTAGGGAGAACAAACTGCAGCTGAATTGGTCTATACCACTCTGTAGGAGCTGTGAGTTCAAAGGAATGGATTGTGGCTTCAAGGATGAAATAAAACAATTGGAAACTC-ATTGTTTCAATCGAACAGCTATAAACCAAAAAG......................................................................................GTATGAAATCTAAGAAGCCCTTGGTTGCAG...........................................................................................GTGTAGTTTTAGGTACAGCGCTTGTTTGCATTATTTCCTTCTTACTTTATAAGCTATATTTGACAAGTAGAAATGAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358815" ref_strand="+" ref_description="SGN-E358815 [cLHT-24-L17]">
      <seq>aaatgttcatcttacttttcttgctatttatcccatcgctcagcttaggacaaagactagagggttgtgaggattcttggtgcaagagtcatggtcccatcgttcattttccgttcagactcagtcatcagccaaaacattgtggctatcctggctttgaactacactgtaacaataaagatgacaccatccttgagcttccctcctctgttcacttacttgttgaaaagattgattatgtctcacagaaaattcacctttatgatcctgaccagtgcttaccagccaagctaccaaaactgaatttgtcacaattcaatttgaaaaatgagtactatcccatggtcctattaaattgttcagcaccattagcagatagtgatgacttcgttccttgtcttagttcttctggttacaaagtttatgctgtttatgagacttatcacctcaacttcttcttgtctgagccttgcacaaaaattcatcactacccttacgcatggtacacatttagggagaacaaactgcagctgaattggtctataccactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="75068" stop="73914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74768" g_stop="74214" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E358815" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74768" e_stop="74214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTCCATCTTACTTTTCTTGCTATTTATCCCATCGCTTAGCTTAGGACAGAGACTAGAGGGCTGTGAGGATTCTTGGTGCAAGAGTCATGGTCCCATCGTTCATTTTCCGTTCAGACTCAGTCATCAGCCAAAACATTGTGGCTATCCTGGCTTTGAACTACACTGTAACACTAAAGGTGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTTGGTGTTGAAAAGATTGATTATGTCTCACAGAAAATTCACCTTTATGATCCTGACCAGTGCTTACCAGCCAAGCTACCAAAACTGAATTTTTCACAATTCAATTTGAAAAATGAATACTTACCCATGGTCCTATTAAATTGTTCCGCACCATTACCAGATACTATTCATGACTTCGTTCCTTGTCTTAGTTCTTCTGCTTACAAAGTTTATGCTGTTTATGAGTTTGATCACCTCAACCTCTTCTTGTCTGAGCCTTGCACAAAAATTCATCACTACCCTTACGCATGGTACACATTTAGGGAGAACAAACTGCAGCTGAATTGGTCTATACCACTCT</genome_strand>
        <mrna_strand>AAATGTTCATCTTACTTTTCTTGCTATTTATCCCATCGCTCAGCTTAGGACAAAGACTAGAGGGTTGTGAGGATTCTTGGTGCAAGAGTCATGGTCCCATCGTTCATTTTCCGTTCAGACTCAGTCATCAGCCAAAACATTGTGGCTATCCTGGCTTTGAACTACACTGTAACAATAAAGATGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTACTTGTTGAAAAGATTGATTATGTCTCACAGAAAATTCACCTTTATGATCCTGACCAGTGCTTACCAGCCAAGCTACCAAAACTGAATTTGTCACAATTCAATTTGAAAAATGAGTACTATCCCATGGTCCTATTAAATTGTTCAGCACCATTAGCAG--A-TAGTGATGACTTCGTTCCTTGTCTTAGTTCTTCTGGTTACAAAGTTTATGCTGTTTATGAGACTTATCACCTCAACTTCTTCTTGTCTGAGCCTTGCACAAAAATTCATCACTACCCTTACGCATGGTACACATTTAGGGAGAACAAACTGCAGCTGAATTGGTCTATACCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358208" ref_strand="+" ref_description="SGN-E358208 [cLHT-23-N19]">
      <seq>aatgtccatcttacttttcttgctatttatcccatcgctcagcttaggacaaagactagagggttgtgaggattcttggtgcaagagtcatggtcccatcgttcattttccgttcagactcagtcatcagccaaaacattgtggctatcctggctttgaactacactgtaacaataaagatgacaccatccttgagcttccctcctctgttcacttacttgttgaaaagattgattatgtctcacagaaaattcacctttatgatcctgaccagtgcttaccagccaagctaccaaaactgaatttgtcacaattcaatttgaaaaatgagtactatcccatggtcctattaaattgttcagcaccattagcagatagtgatgacttcgttccttgtcttagttcttctggttacaaagtttatgctgtttatgagacttatcacctcaacttcttcttgtctgagccttgcacaaaaattcatcactacccttacgcatggtacacatttaaggagaacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="75067" stop="73940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74767" g_stop="74240" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E358208" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74767" e_stop="74240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCCATCTTACTTTTCTTGCTATTTATCCCATCGCTTAGCTTAGGACAGAGACTAGAGGGCTGTGAGGATTCTTGGTGCAAGAGTCATGGTCCCATCGTTCATTTTCCGTTCAGACTCAGTCATCAGCCAAAACATTGTGGCTATCCTGGCTTTGAACTACACTGTAACACTAAAGGTGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTTGGTGTTGAAAAGATTGATTATGTCTCACAGAAAATTCACCTTTATGATCCTGACCAGTGCTTACCAGCCAAGCTACCAAAACTGAATTTTTCACAATTCAATTTGAAAAATGAATACTTACCCATGGTCCTATTAAATTGTTCCGCACCATTACCAGATACTATTCATGACTTCGTTCCTTGTCTTAGTTCTTCTGCTTACAAAGTTTATGCTGTTTATGAGTTTGATCACCTCAACCTCTTCTTGTCTGAGCCTTGCACAAAAATTCATCACTACCCTTACGCATGGTACACATTTAGGGAGAACAAACT</genome_strand>
        <mrna_strand>AATGTCCATCTTACTTTTCTTGCTATTTATCCCATCGCTCAGCTTAGGACAAAGACTAGAGGGTTGTGAGGATTCTTGGTGCAAGAGTCATGGTCCCATCGTTCATTTTCCGTTCAGACTCAGTCATCAGCCAAAACATTGTGGCTATCCTGGCTTTGAACTACACTGTAACAATAAAGATGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTACTTGTTGAAAAGATTGATTATGTCTCACAGAAAATTCACCTTTATGATCCTGACCAGTGCTTACCAGCCAAGCTACCAAAACTGAATTTGTCACAATTCAATTTGAAAAATGAGTACTATCCCATGGTCCTATTAAATTGTTCAGCACCATTAGCAG--A-TAGTGATGACTTCGTTCCTTGTCTTAGTTCTTCTGGTTACAAAGTTTATGCTGTTTATGAGACTTATCACCTCAACTTCTTCTTGTCTGAGCCTTGCACAAAAATTCATCACTACCCTTACGCATGGTACACATTTAAGGAGAACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538978" ref_strand="+" ref_description="SGN-E538978 [TUS-58-H24]">
      <seq>tgatcatctctgaaacatgctatgctaggaatagcgaatttcactactatgtccggtctgcttgtggaaatatccctgacataagttacccttttcggttaaagatcgactcaaaatatagttaccttttcagctcaaataccggttcaaagctatttacagaatatgaattagcttgtgaaggtaaccaaacggttgtatggttattctccaagaagttgcacgttcaagccatcaattatgttaatcacacaactcctgttgtagatccaactttacaaaaacaagatttatgctctctattacctcagccttcaacaatacatgaatagttcgcgttttcatccatattataattacactagtaatggatcacagagtaatagcagagcctatcttcatattcaactgtccgtttgctgttaacaattcaacattagtggctgcaaattaagctggcacacttatttaaagattggagaaatgagtgtatctgaagtcaccgatggatgtgcagagtggaatttatagccatgacctcttggcctaatattaaaaatggcaacaatatttccctttatgatcttcatcaagcattcatcgaagggtttgagctaacttatcatctgaaactggaaatcatagaaacgattcattcaatgtattgggagcaaaatgtgtgattggcctaccgctcataattgaatttctggtgtacatcagcaccagtcaagaaggcagtcctctgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="77001" stop="78916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77301" g_stop="77960" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77961" i_stop="78524" i_length="564">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78525" g_stop="78616" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="752" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E538978" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77301" e_stop="77960"/>
          <exon e_start="78525" e_stop="78616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCTCTGAAACATGCTATGCTAGGAATAGCGAATTTCACTACTATGTCCGTTCTGCTTGTGGAAATATCCCTGACATAAGTTACCCTTTTCGTTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGTACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCTAACTTATCATCTGAAACTGGAAATCATAGAAACGATTCATTCAAGTAAGGATGACATGTCTGTTTACTTATTCAATTAATATTCGTTAGCAAAACAAAGAATTCACTACTACTAAAATTTTATGACTTCAATCTAACCGGGGAACAGAAGGCCGCTACTCTTGTATCTCGGAAGTAAGCTAAGCTCTTATCCCTTCAACAAGAGAGATTACAATTATTTTTACACAGAAGATTTATGATGTTACTCTTCCGACTATACAATCTTCACCAAATAAGTGAAAATGTTAAAATTTGATATCTTTTTTATTAATAACGCAAATCATATTGTTATATATAATAATATAGTTTGGGATCTACAATATTTGGTGCCTAAGGCAAGGACTTCACTTGCCTTAGCTTAGAGCCTGGTCCTGCTCATCCTAGAAGCTAGCTAGCTAGCTCATGAGATGAGGAATATCCAAGACACGACACACAACTCTTCTCTCAACTGACGTGGGACACTTAACAATGTAATTGTCAAGAAAAATTAGATTTTCCTGATCATCATTCATCACTATGAATCGTAGGCTTAAGAGCAAGTTACTTTTATATGACTTCTCAACCGTGCAGTGTATTGGGAGCAAAATGTGTGATTGGCCTACCGTTCATAATTGAATTTCTGGTGTACATCAGCACCAGTCAAGAAGGAAGTCCTCTGTTAA</genome_strand>
        <mrna_strand>TGATCATCTCTGAAACATGCTATGCTAGGAATAGCGAATTTCACTACTATGTCCGGTCTGCTTGTGGAAATATCCCTGACATAAGTTACCCTTTTCGGTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGCACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCTAACTTATCATCTGAAACTGGAAATCATAGAAACGATTCATTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGGGAGCAAAATGTGTGATTGGCCTACCGCTCATAATTGAATTTCTGGTGTACATCAGCACCAGTCAAGAAGGCAGTCCTCTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538976" ref_strand="+" ref_description="SGN-E538976 [TUS-58-H23]">
      <seq>tgatcatctctgaaaatgctatgctaggaatagcgaatttcactactatgtccgttctgcttgtggaaatatccctgacataagttacccttttcgtttaaagatcgactcaaaatatagttaccttttcagctcaaataccggttcaaagctatttacagaatatgaattagcttgtgaaggtaaccaaacggttgtatggttattctccaagaagttgcacgttcaagccatcaattatgttaatcacacaactcctgttgtagatccaactttacaaaaacaagatttatgctctctattacctcagccttcaacaatacatgaatagttcgcgttttcatccatattataattacactagtaatggatcacagagtaatagcagagcctatcttcatattcaactgtccgtttgctgttaacaattcaacattagtggctgcaaattaagctggtacacttatttaaagattggagaaatgagtgtatctgaagtcaccgatggatgtgcagagtggaatttatagccatgacctcttggcctaatattaaaaatggcaacaatatttccctttatgatcttcatcaagcattcatcgaagggtttgagctaacttatcatctgaaactggaaatcatagaaacgattcattcaatgtattgggagcaaaatgtgtgattggcctaccgttcataattgaatttctggtgtacatcagcaccagtcaagaaggaagtcctctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="77001" stop="78914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77301" g_stop="77960" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77961" i_stop="78524" i_length="564">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78525" g_stop="78614" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="749" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E538976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77301" e_stop="77960"/>
          <exon e_start="78525" e_stop="78614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCTCTGAAACATGCTATGCTAGGAATAGCGAATTTCACTACTATGTCCGTTCTGCTTGTGGAAATATCCCTGACATAAGTTACCCTTTTCGTTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGTACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCTAACTTATCATCTGAAACTGGAAATCATAGAAACGATTCATTCAAGTAAGGATGACATGTCTGTTTACTTATTCAATTAATATTCGTTAGCAAAACAAAGAATTCACTACTACTAAAATTTTATGACTTCAATCTAACCGGGGAACAGAAGGCCGCTACTCTTGTATCTCGGAAGTAAGCTAAGCTCTTATCCCTTCAACAAGAGAGATTACAATTATTTTTACACAGAAGATTTATGATGTTACTCTTCCGACTATACAATCTTCACCAAATAAGTGAAAATGTTAAAATTTGATATCTTTTTTATTAATAACGCAAATCATATTGTTATATATAATAATATAGTTTGGGATCTACAATATTTGGTGCCTAAGGCAAGGACTTCACTTGCCTTAGCTTAGAGCCTGGTCCTGCTCATCCTAGAAGCTAGCTAGCTAGCTCATGAGATGAGGAATATCCAAGACACGACACACAACTCTTCTCTCAACTGACGTGGGACACTTAACAATGTAATTGTCAAGAAAAATTAGATTTTCCTGATCATCATTCATCACTATGAATCGTAGGCTTAAGAGCAAGTTACTTTTATATGACTTCTCAACCGTGCAGTGTATTGGGAGCAAAATGTGTGATTGGCCTACCGTTCATAATTGAATTTCTGGTGTACATCAGCACCAGTCAAGAAGGAAGTCCTCTGTT</genome_strand>
        <mrna_strand>TGATCATCTCTGAAA-ATGCTATGCTAGGAATAGCGAATTTCACTACTATGTCCGTTCTGCTTGTGGAAATATCCCTGACATAAGTTACCCTTTTCGTTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGTACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCTAACTTATCATCTGAAACTGGAAATCATAGAAACGATTCATTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGGGAGCAAAATGTGTGATTGGCCTACCGTTCATAATTGAATTTCTGGTGTACATCAGCACCAGTCAAGAAGGAAGTCCTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277948" ref_strand="+" ref_description="SGN-E277948 [cLER-4-M19]">
      <seq>gatcatctctgaaacatgctatgctaggaatagcgaatttcactactatgtccgttctgcttgtggaaatatccctgacataagttacccttttcgtttaaagatcgactcaaaatatagttaccttttcagctcaaataccggttcaaagctatttacagaatatgaattagcttgtgaaggtaaccaaacggttgtatggttattctccaagaagttgcacgttcaagccatcaattatgttaatcacacaactcctgttgtagatccaactttacaaaaacaagatttatgctctctattacctcagccttcaacaatacatgaatagttcgcgttttcatccatattataattacactagtaatggatcacagagtaatagcagagcctatcttcatattcaactgtccgtttgctgttaacaattcaacattagtggctgcaaattaagctggtacacttatttaaagattggagaaatgagtgtatctgaagtcaccgatggatgtgcagagtggaatttatagccatgacctcttggcctaatattaaaaatggcaacaatatttccctttatgatcttcatcaagcattcatcgaagggtttgagctaacttatcatctgaaactggaaatcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="77002" stop="78245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77302" g_stop="77945" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E277948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77302" e_stop="77945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATCTCTGAAACATGCTATGCTAGGAATAGCGAATTTCACTACTATGTCCGTTCTGCTTGTGGAAATATCCCTGACATAAGTTACCCTTTTCGTTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGTACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCTAACTTATCATCTGAAACTGGAAATCATAG</genome_strand>
        <mrna_strand>GATCATCTCTGAAACATGCTATGCTAGGAATAGCGAATTTCACTACTATGTCCGTTCTGCTTGTGGAAATATCCCTGACATAAGTTACCCTTTTCGTTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGTACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCTAACTTATCATCTGAAACTGGAAATCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212481" ref_strand="+" ref_description="SGN-E212481 [cLEC-74-G1]">
      <seq>ataagttacccttttcgtttaaagatcgactcaaaatatagttaccttttcagctcaaataccggttcaaagctatttacagaatatgaattagcttgtgaaggtaaccaaacggttgtatggttattctccaagaagttgcacgttcaagccatcaattatgttaatcacacaactcctgttgtagatccaactttacaaaaacaagatttatgctctctattacctcagccttcaacaatacatgaatagttcgcgttttcatccatattataattacactagtaatggatcacagagtaatagcagagcctatcttcatattcaactgtccgtttgctgttaacaattcaacattagtggctgcaaattaagctggtacacttatttaaagattggagaaatgagtgtatctgaagtcaccgatggatgtgcagagtggaatttatagccatgacctcttggcctaatattaaaaatggcaacaatatttccctttatgatcttcatcaagcattcatcgaagggtttgagcntacttatcatctgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="77081" stop="78234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77381" g_stop="77934" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E212481" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77381" e_stop="77934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTTACCCTTTTCGTTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGTACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCTAACTTATCATCTGAAACT</genome_strand>
        <mrna_strand>ATAAGTTACCCTTTTCGTTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGTACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCNTACTTATCATCTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538975" ref_strand="+" ref_description="SGN-E538975 [TUS-58-H24](-)">
      <seq>tgggagcaaaatgtgtgattggcctaccgttcataattgagtttgtggtgtacatcagcaccagtcaagaaggaagtcctctgttaagttggcagaggaagtatgacattgttgttggagtggctcgaggaattggatatttgcatggaggcagtgatgtacgaattttgcattttgacatcaagccacacaacattcttttggatgagaatttcattccaaagatttctgattttgggcttgcaaaattatatccaacagatataagcattgtgaatctcacagctgctggtggaacaattggttatgtagctccagagttgatcagcagaagcattggagtaatctcttacaaagctgatgtttacagctttggaatgctgctaatggaaatgctggacttgaagagacatgaaggtgcaaatgaagagcattccagccaatattttccttataatatgtacgataagttcaacaagggaaaggaaattgttgtggatgaagaagcaaatgatgatgaaaagaagatggctagaaagttgactttagttacatttatggtgcatacaaacaaatccgatacaacacccttcgatgagtaaagtttacaaatgctggaaggtgaaattgaagtgctagaagcacctcctcagcctcttcaatctccactattgtttatcagatgatgggaagttgtatgacattttcgtctgattccacggctttgttagataattctgctaataataccgtatcaaattagacatagcttatgagtgattcataactaattttatgtttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="78230" stop="79638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78530" g_stop="79344" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E538975" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78530" e_stop="79344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGCAAAATGTGTGATTGGCCTACCGTTCATAATTGAATTTCTGGTGTACATCAGCACCAGTCAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTGTTGTTGGAGTGGCTCGAGGAATTGGATATTTGCATCGAGGCTGTGATGTACGAATTTTGCATTTTGACATCAAGCCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGATTTTGGGCTTGCAAAATTATATCCAACAGATATAAGCATTGTGAATCTCACAGCTGCTCGTGGAACAATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATTGGAGTAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTAATGGAAATGCTGGACTTGAAGAGACATGAAGGTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGGAAGGAAATTGTTGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGTTGACTTTAGTTACATTTATGGTGCATACAAACAAATCCGATACAACACCCTTCGATGAGTAAAGTTTACAAATGCTGGAAGGTGAAATTGAAGTGCTAGAAGCACCTCCTCAGCCTCTTCAATCTCCACTATTGTTTATCAGATGATGGGAAGTTCTATGACATTTTCGTCTGATTCCATGGCTTTGTTAGATAATTCTGCTAATAATACCGTATCAAATTAGACATATGTTATGAGTGATTCATAACTAATTTTATGTTTCTCATGAAGTTTGT</genome_strand>
        <mrna_strand>TGGGAGCAAAATGTGTGATTGGCCTACCGTTCATAATTGAGTTTGTGGTGTACATCAGCACCAGTCAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTGTTGTTGGAGTGGCTCGAGGAATTGGATATTTGCATGGAGGCAGTGATGTACGAATTTTGCATTTTGACATCAAGCCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGATTTTGGGCTTGCAAAATTATATCCAACAGATATAAGCATTGTGAATCTCACAGCTGCTGGTGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAGCAGAAGCATTGGAGTAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTAATGGAAATGCTGGACTTGAAGAGACATGAAGGTGCAAATGAAGAGCATTCCAGCCAATATTTTCCTTATAATATGTACGATAAGTTCAACAAGGGAAAGGAAATTGTTGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGTTGACTTTAGTTACATTTATGGTGCATACAAACAAATCCGATACAACACCCTTCGATGAGTAAAGTTTACAAATGCTGGAAGGTGAAATTGAAGTGCTAGAAGCACCTCCTCAGCCTCTTCAATCTCCACTATTGTTTATCAGATGATGGGAAGTTGTATGACATTTTCGTCTGATTCCACGGCTTTGTTAGATAATTCTGCTAATAATACCGTATCAAATTAGACATAGCTTATGAGTGATTCATAACTAATTTTATGTTTCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538973" ref_strand="+" ref_description="SGN-E538973 [TUS-58-H23](-)">
      <seq>cgttcataattgatttctggtgtacatcagcaccagtcaagaaggaagtcctctgttaagttggcagaggaagtatgacattgttgttggagtggctcgaggaattggatatttgcatcgaggcagtgatgtacgaattttgcattttgacatcaagccacacaacattcttttggatgagaatttcattccaaagatttctgattttgggcttgcaaaattatatccaacagatataagcattgtgaatctcacagctgctcgtggaacaattggctatgtagctccagagttgatcagcagaagcattggagtaatctcttacaaagctgatgtttacagctttggaatgctgctaatggaaatgctggacttgaagagacatgaaggtgcaaatgaagagcattccagccaatattttccttattatatttacgataagttcaacaagggaaaggaaattgttgtggatgaagaagcaaatgatgatgaaaagaagatggctagaaagttgactttagttacatttatggtgcatacaaacaaatccgatacaacacccttcgatgagtaaagtttacaaatgctggaaggtgaaattgaagtgctagaagcacctcctcagcctcttcaatctccactattgtttatcagatgatgggaagttctatgacattttcgtctgattccatggctttgttagataattctgctaataataccgtatcaaattagacatatgttatgagtgattcataactaattttatgtttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="78257" stop="79638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78557" g_stop="79344" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="787" r_length="787" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E538973" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78557" e_stop="79344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCATAATTGAATTTCTGGTGTACATCAGCACCAGTCAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTGTTGTTGGAGTGGCTCGAGGAATTGGATATTTGCATCGAGGCTGTGATGTACGAATTTTGCATTTTGACATCAAGCCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGATTTTGGGCTTGCAAAATTATATCCAACAGATATAAGCATTGTGAATCTCACAGCTGCTCGTGGAACAATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATTGGAGTAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTAATGGAAATGCTGGACTTGAAGAGACATGAAGGTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGGAAGGAAATTGTTGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGTTGACTTTAGTTACATTTATGGTGCATACAAACAAATCCGATACAACACCCTTCGATGAGTAAAGTTTACAAATGCTGGAAGGTGAAATTGAAGTGCTAGAAGCACCTCCTCAGCCTCTTCAATCTCCACTATTGTTTATCAGATGATGGGAAGTTCTATGACATTTTCGTCTGATTCCATGGCTTTGTTAGATAATTCTGCTAATAATACCGTATCAAATTAGACATATGTTATGAGTGATTCATAACTAATTTTATGTTTCTCATGAAGTTTGT</genome_strand>
        <mrna_strand>CGTTCATAATTG-ATTTCTGGTGTACATCAGCACCAGTCAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTGTTGTTGGAGTGGCTCGAGGAATTGGATATTTGCATCGAGGCAGTGATGTACGAATTTTGCATTTTGACATCAAGCCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGATTTTGGGCTTGCAAAATTATATCCAACAGATATAAGCATTGTGAATCTCACAGCTGCTCGTGGAACAATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATTGGAGTAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTAATGGAAATGCTGGACTTGAAGAGACATGAAGGTGCAAATGAAGAGCATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGAAAGGAAATTGTTGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGTTGACTTTAGTTACATTTATGGTGCATACAAACAAATCCGATACAACACCCTTCGATGAGTAAAGTTTACAAATGCTGGAAGGTGAAATTGAAGTGCTAGAAGCACCTCCTCAGCCTCTTCAATCTCCACTATTGTTTATCAGATGATGGGAAGTTCTATGACATTTTCGTCTGATTCCATGGCTTTGTTAGATAATTCTGCTAATAATACCGTATCAAATTAGACATATGTTATGAGTGATTCATAACTAATTTTATGTTTCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745353" ref_strand="+" ref_description="SGN-E745353 [GI|47105725]">
      <seq>ggcagttctctttttgtttaaactgtgagactgaatttgctttcccaaaaatttcatcttcagctaatcagaacatcaaccctaaaatgagaaacactttgtgaaatcttgaaagtttaagttctgaattgaactgcggtggcattgtggtcgtgtctacggtttcaaacagtcaccggaagtgccggtggagcaattcctgctgaaactgagttgggtcatccccatttacttcaacttcaagatttgagacgaattacatggattcagccgctgcaatttctttatgcccatcaactcctggttggaatctcgatcgtccctttcttactggccaattttatcaggaaacaaagatttcgtctggaacttctgagtacaaggggttttctgcggaatcaagttccggagcagataaagctataggttgttaccatgccaccattcaggacgctatatttcgatcaagaaagtccgagggaaggaggatgacataacctttcaggttgatgcatctatggatttagctcttcaggagtttgcaaaaaggctgttcccgttatgcgaaagttatatcttgattaaccagtttgtggagacaaggtcacagttcaagacaggcctagtcaatcatgcctttgctgcagctctaagggcactcctccttgcaaaggcaatggctggtgatcatgtagtgaggtctttgctggaaaagatgtcacaatcagcaagcactgcatatcttggaatattagagaggtgggtgtatgaaggagtgattgatgatccttatggtgaattctttattgccgagaacaagtctcttcagaaggagagtcttactcaagattatgatgccaagtactggcaacaacgttacagcctgaaagatgaaattcctagcttccttgcaaatgcagcggaaacaattttgatcactggaaaatatttaaatgtcatgagagagtgtggacatagcattcagatccctgtggcagaaaagtcaaagttgacaagtgcaggctcaaatcatcactatttggagtgtatcaagtctgcttatgattttgccagtggcgaactattaaaccttgttaaaaacaagtatgatctcatgggtaaactgcaatctattaagcactatcttcttcttgatcagggtgatttcttagtgcacttcatggatacagctagagaggagctcatgaagaagcctgatgagatatctgtggagaagctacagtctcttctagaccttgctttgcgatctactgcagctggtgcagatccttgccatgaggacttgttatgttgtgtggagaggactactttattgaaaagattgagtacattgaaagatcttgaaatcagccggtctgctccagatagcaatgatttagaggagccactgagcataactggcttggaaactttttctttgaattacaaggtttgccttttaatttctcttgtagatgaaggaaattacaccgcagctccccacaacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="80453" stop="87148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80752" g_stop="81098" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81099" i_stop="81284" i_length="186">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81285" g_stop="81340" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="403" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81341" i_stop="81510" i_length="170">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81511" g_stop="81556" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="449" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81557" i_stop="82035" i_length="479">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.355" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82036" g_stop="82121" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="535" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82122" i_stop="82306" i_length="185">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82307" g_stop="82438" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="667" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82439" i_stop="84506" i_length="2068">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84507" g_stop="84598" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="759" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84599" i_stop="85124" i_length="526">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85125" g_stop="85197" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="832" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="85198" i_stop="85268" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="85269" g_stop="85421" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="985" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="85422" i_stop="85540" i_length="119">
            <donor d_prob="0.234" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="85541" g_stop="85660" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="986" r_stop="1105" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="85661" i_stop="85777" i_length="117">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="85778" g_stop="85831" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1106" r_stop="1159" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="85832" i_stop="86294" i_length="463">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="86295" g_stop="86378" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1160" r_stop="1243" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="86379" i_stop="86478" i_length="100">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="86479" g_stop="86553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1244" r_stop="1318" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="86554" i_stop="86639" i_length="86">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="86640" g_stop="86848" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1319" r_stop="1527" r_length="209" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E745353" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80752" e_stop="81098"/>
          <exon e_start="81285" e_stop="81340"/>
          <exon e_start="81511" e_stop="81556"/>
          <exon e_start="82036" e_stop="82121"/>
          <exon e_start="82307" e_stop="82438"/>
          <exon e_start="84507" e_stop="84598"/>
          <exon e_start="85125" e_stop="85197"/>
          <exon e_start="85269" e_stop="85421"/>
          <exon e_start="85541" e_stop="85660"/>
          <exon e_start="85778" e_stop="85831"/>
          <exon e_start="86295" e_stop="86378"/>
          <exon e_start="86479" e_stop="86553"/>
          <exon e_start="86640" e_stop="86848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTTCTCTTTTTGTTTAAACTGTGAGACTGAATTTGCTTTCCCAAAAATTTCATCTTCAGCTAATCAGAACATCAACCCTAAAATGAGAAACACTTTGTGAAATCTTGAAAGTTTAAGTTCTGAATTGAACTGCGGTGGCATTGTGGTCGTGTCTACGGTTTCAAACAGTCACCGGAAGTGCCGGTGGAGCAATTCCTGCTGAAACTGAGTTGGGTCATCCCCATTTACTTCAACTTCAAGATTTGAGACGAATTACATGGATTCAGCCGCTGCAATTTCTTTATGCCCATCAACTCCTGGTTGGAATCTCGATCGTCCCTTTCTTACTGGCCAATTTTATCAGGTACTCAACATTTTATTGCTTGACATATGTATGCAATAAACCCCTTCATGCCGTTATCTAAAACCTTCATTTTCTTGGACTTTTTCGACTCTTCATGAATGCTGCTTTTTTCCGCCCTTCTTTTCTTCTTTTTCTTGATGTCCTAGGTTGAATTGAAACTATTTTGCCCCTTGAAAATACATACAGGAAACAAAGATTTCGTCTGGAACTTCTGAGTACAAGGGGTTTTCTGCGGAATCAAGGTTCCCCTTTTATTCCTTGGCTTTCTGCTATTACAATTCAATTTTTTTTTTTTTTTTAATAATGTGTTTTATCTTGGTGTGTTTGATTTACTTTTTTAAGTCAAATTGGTGACTTCTATTTGGTACATCTCCTACTTATTTTCTGTTTCTGTCTGGAAATTTTAATGCAGTTCCGGAGCAGATAAAGCTATAGGTTGTTACCATGCCACCATTCAGGTATGCCTCTGCTGAATCAAATAGGTTGTTCCTTATCCATCTTTTTATAATTTTTGTTCATATTGTTGTTGGTTGTCACTCTTATTGTTATTGTTATCATCTAGTATAATGCCAGTAAGAAGAAGTTATATATTTGACTCCAAACGTATACACCTGGATCATAAGTTCTAACGAGACTGTAGTCAACTTATGTCATGTTTTCTTCTTGTGTGTGTGTTGATATAGTTTGCAAGTTAAGGTCCTGTGAATATTTGTGTATTTTCTTGCTTTAAGTTTTAAGGTTAAGGATAGTGAGGACTATTATGTTGTGGCCCATCTAAATGGTTTTTCTTGTTAATATGTTATGTCCTATATGAACTTGACGATCTTGGTTTTGAGTTTGGTCAGGGTCACCGTCATTTATTAAAATATTGTCTTAACTATTATGCAGGAATTGATTGTTATTGATGATCTTCTATCTACCCTTATTGGAATTGAAGGACGCTATATTTCGATCAAGAAAGTCCGAGGGAAGGAGGATGACATAACCTTTCAGGTTGATGCATCTATGGATTTAGCTCTTCAGGTACTTATAGGGAGATATGTTTTCTGTAAAAATAGCTAACGAAAAAATGAGACATTTCATCCCTGATATATAGTGTTCTAAAGCAACGAAATATTTTGAGGCTAAAAGCCAAGTAAACATGAAAGAAAATCCATAGCGTATTTAGTTTAAAACATTAGCTGAAATAATTTGGGCTATTATTGTAGGAGTTTGCAAAAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTTGTAAGTTTCTTATTTATTGATCCTTCTATGGTTGCATGGTGGATTATTCTTTTCTCTACTTGTTTATCTGGTATGTTATCCATCTTATGTATAAGCTCTTCTTGAGGATGTCTAAATTTTATATTTGAGAAATCATTTCTGGGAGGATTGAATCATCTTCATTATTTGTTTAATCTCTTTTTGGATACTGTAGATTCTCTCCTCCTTGGTATAGCTTGTATATGGTTCAATTATTACTAAAAAAATTATTACCTTACAAAATAAAAATCTCTTTTTGTGGATGGATTAATGTGACTTTCAGAAGATTATCTCCTGGGAAGCTGAGAAAACCTGTCTGCTACCTTAATTTGGTTCAGCTAATTGTCTAAGGTTTTTGGATGCCATGAGTTGTTTCCATAATTGTCCCATGCTGTGTGGACATACATGTACAATGTAGTATTAAGAGAAAGAATAATAAAGGAAAATAAAAAGGGAGAGCTAATTGAAGTCTAGAATATATTTTTTCCAGGACTACCAAGCAATGGTGGCACAGCTTGAACATCAATTTCGCTTAGGAAAACTTTCTATACAAGGATTATGGTTTTACTGCCAGGTAACGCTGCTTAAACTGGTTTAATTTCCATTCAGTTTGACTCCTCGTCATTGGTGCTTATGAAGCTATGTCTTGCAGCCAATGATGGGTTCGATGCAAGCACTGTCTATGGTGGTGAAAAAGGCTGCAGCGGATAACTGTGTTGGTTCTGCAGTCCTTAACCTCTTGCAAAGCCAGGTCTAACATCTTAGTCACTTTTCATGACTTTAAGGATCTATGTCTGAGTTCCCCTGGAATTGTGGAATACCATAGATTCATTACGATGGTTTAAATTCCATATTTGCTTGAACATTTGTGGTTTGGTTTCGCATGGTTATCAAAATGAGACCTGCAATTTTTATGTTTTAAGGGGTCGTTTGGTAGTGTATTAGTAATGCATGTATTAGTTATGCTTGCATTCATTATTCAATAATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAAATAGCATTTATTGCATAAAAAAGTTATTTACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTATAAAAAGTTTTGAGGGATAATTGGGTCTTTAATTGAGTTAATGCATGCATTAAAAACCATTGCATTGCTAATACCTAGAAATATATGGTATTACTAATGCACACCTTAATACACAATAGAGTGTATAACTAATGCAAGTTAGTTATACATAAATTAGAAAAGAGTACCAAACAAGGTACTAGTAATACACAAGGCTAATGCATGCATTATTTTTCCTAATACACTCGGTCAAACGACCCCTAATAATTTTAGTTAATTAGTCTTTCTCATTCCAAAATCTTCATGGGAAGTTTGAACAGATTTTAAGTGTCTGTGATAGACTCTATTTTGATATGTTTAGAATTGTTGAGAAAATAAGATAAGGAACAACCCTTGGGGTTCATCTCAATTGGCAAAGGTTGAGGGACTTTGATCTTAAATCACTAGTGTGAGTCCTATGCCAAACGAATTAAGACTAGTTTATGTGGAGAATGGTAAAAGGCGGAGCCATCATCCTGGATTTCTGGAAACTGCAGTTGGCCCAAAGGGTTGGTTCCGAACGAGTTTCTTGGTCATAAAAAACATAAGAAGGAATAATTGGTTCTCACACAACATTCACGAAATAGAGAGCTAATGCAAACAGACATGAAAGTAATCTGTAACAATAGTGGTGGCTATTTTTCTTCTTTTTGAACGTCTCTGGTGACTGCAACAACGAGAATTATATTACCAATGCTATGATACCATCTGAACAAATAAAACATGGAATAATTGAGTGAAAACTTAGCTTGATTACTCCCTCAAGTTGCTGGACTTAAAAAGTGAATGTACGACAGTACGAGTGTTAAAATAGGGAAGAATCTCTCTAATTAGTCCTAGTTGGTATACAGTATCATTTACAATTTTCTTTACAGAAACTACATATGTTCTATTTGATCAGAGGGGGTCTATATTTATTTCCAGATTAATTGTTCTGTTTTAGGCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCACTGCATATCTTGGAATATTAGAGAGGTACTTAATCTAGATTCTGCAATGATTATCCAAGTTTGCTTAAGGTCTGGCTGACCTCTCATTGTCTGGGAATTGCCTAATCAAATATTGTTTTGTCCTAAAATAACATGTTTCTACTTTTTGTTAAGTGTAAAAGAAGTTGGTGATACATAAATCGCCAGGGTTAAAGGAGTAGTGGTTCCTATATCTGCTATTTGATCTTGACGTGTCTATGCTAATAATGTCTACTTGGGGAATCAGCTGATGTAGTTATAACACATATTAAAAAGTAGTGTAGGTTTCCTTCAACAATGAGTTTCCGCTAAATTGGTAATGCATTTTTTTAATCTTTATACTATTCCCATGATAATAAGCAAGTAAAGTACTTGTTTTCTTGTCTTCTAGAGTAAATGTTAGGTTTTCATCAGCTGCCTTTTGTAGGTATTAAGTGTGTCGCTTTTTCTCGTTTTTTGACAGTCTTTGAACTTCCCGTTCTTTTATAGTGAATTACTGTTGTTTCTCAATGTGAACTACCCTAAAATTTCAGGTGGGTGTATGAAGGAGTGATTGATGATCCTTATGGTGAATTCTTTATTGCCGAGAACAAGTCTCTTCAGAAGGTACATCTTTTTCAGCAACACTTTTTTACTTAGTTGCTGACATCTCATTGATCTCACTGTATTTTCCACAGGAGAGTCTTACTCAAGATTATGATGCCAAGTACTGGCAACAACGTTACAGCCTGAAAGATGAAATTCCTAGCTTCCTTGCAAATGCAGCGGAAACAATTTTGATCACTGGAAAATATTTAAATGTCATGAGAGAGTGTGGACATAGCATTCAGGTTTTGACAAGATCCCATTGCTGCTATATGTTCACACAATAAAGCTTTTCCATCTTTCTTTGCATTACAATTCCATTAGTAATATTAGCAGAGGTTCGTGACCAAATTGTTTTTGTTAGATCCCTGTGGCAGAAAAGTCAAAGTTGACAAGTGCAGGCTCAAATCATCACTATTTGGAGTGTATCAAGTCTGCTTATGATTTTGCCAGTGGCGAACTATTAAACCTTGTTAAAAACAAGGTATGCTGAAGCAAGAAAGATATTTCTTGACAGCTTTTTTCCATGTTTCTTGATTTGTTACTACAAGTGCTTTTACATGAAACTTCTCTCTGATGAAACCTTTCTATTCTTTGGCAGTATGATCTCATGGGTAAACTGCAATCTATTAAGCACTATCTTCTTCTTGATCAGGTACCAGCTAGCGATTAACAAATTATATATCTAAGTTTATGATAGTTTGGGAATTGGGGGTTATGGGGAAAACACTGGTAAACTTTGAATTTAAATGCTACATGCAATGGAATGCTTCAATAACTTTCTTTATTAACTAGTCAGTCCCTTTGCATTATCTTCTTTTAGTAAAAGAAGATATTTCTTGGCCTAGCAGCTGGCATCAAAATGTGTTGCAGGAAGAAGAAAATGTTAGACACTCTTATGCCTATCTTTTCCAAACAAGCAAATCCATCAATTAAAATGCAAATTTTTAGAATCATTCTATGCTTCTCTGTCATCCTGACCCTGGTTTTGCATTTTTCTTTGGTTTCATTCTTTATTTCTTCATGTGTGCTCTCTGTAGATGGAAGTTAAAGAATTGTTCTGGTGCTGGTTTCCATTAAGAAATTTATATTCATACTCACTTCAACTGTACATGCAGGGTGATTTCTTAGTGCACTTCATGGATACAGCTAGAGAGGAGCTCATGAAGAAGCCTGATGAGATATCTGTGGAGAAGCTACAGGTTTATACATAGTTCTTTAGGTTTCTGCTTCCTCTAAATAGGGAAATCATTTGAAGCTCTTTATAATGTGGTGTCATCTTCTTTTCTTTCTTCTGAGTAGTCTCTTCTAGACCTTGCTTTGCGATCTACTGCAGCTGGTGCAGATCCTTGCCATGAGGACTTGTTATGTTGTGTGGTGAGTTATTATTACCTTGGCCTGTTTAACCTTCTAGACATGGAGATAATCTGCTAAATTATGTAAAATATGGTCCATCTTTTCAGGAGAGGACTACTTTATTGAAAAGATTGAGTACATTGAAAGATCTTGAAATCAGCCGGTCTGCTCCAGATAGCAATGATTTAGAGGAGCCACTGAGCATAACTGGCTTGGAAACTTTTTCTTTGAATTACAAGGTTTGCCTTCTAATTTCTCTTGTAGATGAAGGAAATTACACCGCAGCTCCACACAACAAAAAGAAAAAGAAAAAAGA</genome_strand>
        <mrna_strand>GGCAGTTCTCTTTTTGTTTAAACTGTGAGACTGAATTTGCTTTCCCAAAAATTTCATCTTCAGCTAATCAGAACATCAACCCTAAAATGAGAAACACTTTGTGAAATCTTGAAAGTTTAAGTTCTGAATTGAACTGCGGTGGCATTGTGGTCGTGTCTACGGTTTCAAACAGTCACCGGAAGTGCCGGTGGAGCAATTCCTGCTGAAACTGAGTTGGGTCATCCCCATTTACTTCAACTTCAAGATTTGAGACGAATTACATGGATTCAGCCGCTGCAATTTCTTTATGCCCATCAACTCCTGGTTGGAATCTCGATCGTCCCTTTCTTACTGGCCAATTTTATCAG..........................................................................................................................................................................................GAAACAAAGATTTCGTCTGGAACTTCTGAGTACAAGGGGTTTTCTGCGGAATCAAG..........................................................................................................................................................................TTCCGGAGCAGATAAAGCTATAGGTTGTTACCATGCCACCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTATATTTCGATCAAGAAAGTCCGAGGGAAGGAGGATGACATAACCTTTCAGGTTGATGCATCTATGGATTTAGCTCTTCAG.........................................................................................................................................................................................GAGTTTGCAAAAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCACTGCATATCTTGGAATATTAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGTATGAAGGAGTGATTGATGATCCTTATGGTGAATTCTTTATTGCCGAGAACAAGTCTCTTCAGAAG.......................................................................GAGAGTCTTACTCAAGATTATGATGCCAAGTACTGGCAACAACGTTACAGCCTGAAAGATGAAATTCCTAGCTTCCTTGCAAATGCAGCGGAAACAATTTTGATCACTGGAAAATATTTAAATGTCATGAGAGAGTGTGGACATAGCATTCAG.......................................................................................................................ATCCCTGTGGCAGAAAAGTCAAAGTTGACAAGTGCAGGCTCAAATCATCACTATTTGGAGTGTATCAAGTCTGCTTATGATTTTGCCAGTGGCGAACTATTAAACCTTGTTAAAAACAAG.....................................................................................................................TATGATCTCATGGGTAAACTGCAATCTATTAAGCACTATCTTCTTCTTGATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTTCTTAGTGCACTTCATGGATACAGCTAGAGAGGAGCTCATGAAGAAGCCTGATGAGATATCTGTGGAGAAGCTACAG....................................................................................................TCTCTTCTAGACCTTGCTTTGCGATCTACTGCAGCTGGTGCAGATCCTTGCCATGAGGACTTGTTATGTTGTGTG......................................................................................GAGAGGACTACTTTATTGAAAAGATTGAGTACATTGAAAGATCTTGAAATCAGCCGGTCTGCTCCAGATAGCAATGATTTAGAGGAGCCACTGAGCATAACTGGCTTGGAAACTTTTTCTTTGAATTACAAGGTTTGCCTTTTAATTTCTCTTGTAGATGAAGGAAATTACACCGCAGCTCCCCACAACAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262275" ref_strand="+" ref_description="SGN-E262275 [cLEG-56-M20]">
      <seq>tcgatcgtccctttcttactggccaattttatcaggaaacaaagatttcgtctggaacttctgagtacaaggggttttctgcggaatcaagttccggagcagataaagctataggttgttaccatgccaccattcaggaattgattgttattgatgatcttctatctacccttattggaattgaaggacgctatatttcgatcaagaaagtccgagggaaggaggatgacataacctttcaggttgatgcatctatggatttagctcttcaggagtttgcaaaaaggctgttcccgttatgcgaaagttatatcttgattaaccagtttgtggagacaaggtcacagttcaagacaggcctagtcaatcatgcctttgctgcagctctaagggcactcctccttgactaccaagcaatggtggcacagcttgaacatcaatttcgcttaggaaaactttctatacaaggattatggttttactgccagccaatgatgggttcgatgcaagcactgtctatggtggtgaaaaaggctgcagcggataactgtgttggttctgcagtccttaacctcttgcaaagccaggcaaaggcaatggctggtgatcatgtagtgaggtctttgctggaaaagatgtcacaatcagcaagcactgcatatcttggaatattagagaggtgggtgtatgaaggagtgattgatgatccttatggtgaattctttattgccgangacaagtctcttcagaaggagagtctttactcagattatgatgccaagtactgggcaacacgttacagcctgaaagatgaaattcctagcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="80764" stop="85645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81064" g_stop="81098" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81099" i_stop="81284" i_length="186">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81285" g_stop="81340" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="91" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81341" i_stop="81510" i_length="170">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81511" g_stop="81556" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="137" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81557" i_stop="81986" i_length="430">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81987" g_stop="82121" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="272" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82122" i_stop="82306" i_length="185">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82307" g_stop="82438" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="404" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82439" i_stop="82946" i_length="508">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.280" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82947" g_stop="83030" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="488" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83031" i_stop="83108" i_length="78">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83109" g_stop="83207" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="587" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83208" i_stop="84506" i_length="1299">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84507" g_stop="84598" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="679" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="84599" i_stop="85124" i_length="526">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="85125" g_stop="85197" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="752" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="85198" i_stop="85268" i_length="71">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="85269" g_stop="85345" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="829" r_length="77" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E262275" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81064" e_stop="81098"/>
          <exon e_start="81285" e_stop="81340"/>
          <exon e_start="81511" e_stop="81556"/>
          <exon e_start="81987" e_stop="82121"/>
          <exon e_start="82307" e_stop="82438"/>
          <exon e_start="82947" e_stop="83030"/>
          <exon e_start="83109" e_stop="83207"/>
          <exon e_start="84507" e_stop="84598"/>
          <exon e_start="85125" e_stop="85197"/>
          <exon e_start="85269" e_stop="85345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCGTCCCTTTCTTACTGGCCAATTTTATCAGGTACTCAACATTTTATTGCTTGACATATGTATGCAATAAACCCCTTCATGCCGTTATCTAAAACCTTCATTTTCTTGGACTTTTTCGACTCTTCATGAATGCTGCTTTTTTCCGCCCTTCTTTTCTTCTTTTTCTTGATGTCCTAGGTTGAATTGAAACTATTTTGCCCCTTGAAAATACATACAGGAAACAAAGATTTCGTCTGGAACTTCTGAGTACAAGGGGTTTTCTGCGGAATCAAGGTTCCCCTTTTATTCCTTGGCTTTCTGCTATTACAATTCAATTTTTTTTTTTTTTTTAATAATGTGTTTTATCTTGGTGTGTTTGATTTACTTTTTTAAGTCAAATTGGTGACTTCTATTTGGTACATCTCCTACTTATTTTCTGTTTCTGTCTGGAAATTTTAATGCAGTTCCGGAGCAGATAAAGCTATAGGTTGTTACCATGCCACCATTCAGGTATGCCTCTGCTGAATCAAATAGGTTGTTCCTTATCCATCTTTTTATAATTTTTGTTCATATTGTTGTTGGTTGTCACTCTTATTGTTATTGTTATCATCTAGTATAATGCCAGTAAGAAGAAGTTATATATTTGACTCCAAACGTATACACCTGGATCATAAGTTCTAACGAGACTGTAGTCAACTTATGTCATGTTTTCTTCTTGTGTGTGTGTTGATATAGTTTGCAAGTTAAGGTCCTGTGAATATTTGTGTATTTTCTTGCTTTAAGTTTTAAGGTTAAGGATAGTGAGGACTATTATGTTGTGGCCCATCTAAATGGTTTTTCTTGTTAATATGTTATGTCCTATATGAACTTGACGATCTTGGTTTTGAGTTTGGTCAGGGTCACCGTCATTTATTAAAATATTGTCTTAACTATTATGCAGGAATTGATTGTTATTGATGATCTTCTATCTACCCTTATTGGAATTGAAGGACGCTATATTTCGATCAAGAAAGTCCGAGGGAAGGAGGATGACATAACCTTTCAGGTTGATGCATCTATGGATTTAGCTCTTCAGGTACTTATAGGGAGATATGTTTTCTGTAAAAATAGCTAACGAAAAAATGAGACATTTCATCCCTGATATATAGTGTTCTAAAGCAACGAAATATTTTGAGGCTAAAAGCCAAGTAAACATGAAAGAAAATCCATAGCGTATTTAGTTTAAAACATTAGCTGAAATAATTTGGGCTATTATTGTAGGAGTTTGCAAAAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTTGTAAGTTTCTTATTTATTGATCCTTCTATGGTTGCATGGTGGATTATTCTTTTCTCTACTTGTTTATCTGGTATGTTATCCATCTTATGTATAAGCTCTTCTTGAGGATGTCTAAATTTTATATTTGAGAAATCATTTCTGGGAGGATTGAATCATCTTCATTATTTGTTTAATCTCTTTTTGGATACTGTAGATTCTCTCCTCCTTGGTATAGCTTGTATATGGTTCAATTATTACTAAAAAAATTATTACCTTACAAAATAAAAATCTCTTTTTGTGGATGGATTAATGTGACTTTCAGAAGATTATCTCCTGGGAAGCTGAGAAAACCTGTCTGCTACCTTAATTTGGTTCAGCTAATTGTCTAAGGTTTTTGGATGCCATGAGTTGTTTCCATAATTGTCCCATGCTGTGTGGACATACATGTACAATGTAGTATTAAGAGAAAGAATAATAAAGGAAAATAAAAAGGGAGAGCTAATTGAAGTCTAGAATATATTTTTTCCAGGACTACCAAGCAATGGTGGCACAGCTTGAACATCAATTTCGCTTAGGAAAACTTTCTATACAAGGATTATGGTTTTACTGCCAGGTAACGCTGCTTAAACTGGTTTAATTTCCATTCAGTTTGACTCCTCGTCATTGGTGCTTATGAAGCTATGTCTTGCAGCCAATGATGGGTTCGATGCAAGCACTGTCTATGGTGGTGAAAAAGGCTGCAGCGGATAACTGTGTTGGTTCTGCAGTCCTTAACCTCTTGCAAAGCCAGGTCTAACATCTTAGTCACTTTTCATGACTTTAAGGATCTATGTCTGAGTTCCCCTGGAATTGTGGAATACCATAGATTCATTACGATGGTTTAAATTCCATATTTGCTTGAACATTTGTGGTTTGGTTTCGCATGGTTATCAAAATGAGACCTGCAATTTTTATGTTTTAAGGGGTCGTTTGGTAGTGTATTAGTAATGCATGTATTAGTTATGCTTGCATTCATTATTCAATAATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAAATAGCATTTATTGCATAAAAAAGTTATTTACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTATAAAAAGTTTTGAGGGATAATTGGGTCTTTAATTGAGTTAATGCATGCATTAAAAACCATTGCATTGCTAATACCTAGAAATATATGGTATTACTAATGCACACCTTAATACACAATAGAGTGTATAACTAATGCAAGTTAGTTATACATAAATTAGAAAAGAGTACCAAACAAGGTACTAGTAATACACAAGGCTAATGCATGCATTATTTTTCCTAATACACTCGGTCAAACGACCCCTAATAATTTTAGTTAATTAGTCTTTCTCATTCCAAAATCTTCATGGGAAGTTTGAACAGATTTTAAGTGTCTGTGATAGACTCTATTTTGATATGTTTAGAATTGTTGAGAAAATAAGATAAGGAACAACCCTTGGGGTTCATCTCAATTGGCAAAGGTTGAGGGACTTTGATCTTAAATCACTAGTGTGAGTCCTATGCCAAACGAATTAAGACTAGTTTATGTGGAGAATGGTAAAAGGCGGAGCCATCATCCTGGATTTCTGGAAACTGCAGTTGGCCCAAAGGGTTGGTTCCGAACGAGTTTCTTGGTCATAAAAAACATAAGAAGGAATAATTGGTTCTCACACAACATTCACGAAATAGAGAGCTAATGCAAACAGACATGAAAGTAATCTGTAACAATAGTGGTGGCTATTTTTCTTCTTTTTGAACGTCTCTGGTGACTGCAACAACGAGAATTATATTACCAATGCTATGATACCATCTGAACAAATAAAACATGGAATAATTGAGTGAAAACTTAGCTTGATTACTCCCTCAAGTTGCTGGACTTAAAAAGTGAATGTACGACAGTACGAGTGTTAAAATAGGGAAGAATCTCTCTAATTAGTCCTAGTTGGTATACAGTATCATTTACAATTTTCTTTACAGAAACTACATATGTTCTATTTGATCAGAGGGGGTCTATATTTATTTCCAGATTAATTGTTCTGTTTTAGGCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCACTGCATATCTTGGAATATTAGAGAGGTACTTAATCTAGATTCTGCAATGATTATCCAAGTTTGCTTAAGGTCTGGCTGACCTCTCATTGTCTGGGAATTGCCTAATCAAATATTGTTTTGTCCTAAAATAACATGTTTCTACTTTTTGTTAAGTGTAAAAGAAGTTGGTGATACATAAATCGCCAGGGTTAAAGGAGTAGTGGTTCCTATATCTGCTATTTGATCTTGACGTGTCTATGCTAATAATGTCTACTTGGGGAATCAGCTGATGTAGTTATAACACATATTAAAAAGTAGTGTAGGTTTCCTTCAACAATGAGTTTCCGCTAAATTGGTAATGCATTTTTTTAATCTTTATACTATTCCCATGATAATAAGCAAGTAAAGTACTTGTTTTCTTGTCTTCTAGAGTAAATGTTAGGTTTTCATCAGCTGCCTTTTGTAGGTATTAAGTGTGTCGCTTTTTCTCGTTTTTTGACAGTCTTTGAACTTCCCGTTCTTTTATAGTGAATTACTGTTGTTTCTCAATGTGAACTACCCTAAAATTTCAGGTGGGTGTATGAAGGAGTGATTGATGATCCTTATGGTGAATTCTTTATTGCCGAGAACAAGTCTCTTCAGAAGGTACATCTTTTTCAGCAACACTTTTTTACTTAGTTGCTGACATCTCATTGATCTCACTGTATTTTCCACAGGAGAGTC-TTACTCAAGATTATGATGCCAAGTACTGGCAACAACGTTACAGCCTGAAAGATGAAATTCCTAGCTTCCT</genome_strand>
        <mrna_strand>TCGATCGTCCCTTTCTTACTGGCCAATTTTATCAG..........................................................................................................................................................................................GAAACAAAGATTTCGTCTGGAACTTCTGAGTACAAGGGGTTTTCTGCGGAATCAAG..........................................................................................................................................................................TTCCGGAGCAGATAAAGCTATAGGTTGTTACCATGCCACCATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGATTGTTATTGATGATCTTCTATCTACCCTTATTGGAATTGAAGGACGCTATATTTCGATCAAGAAAGTCCGAGGGAAGGAGGATGACATAACCTTTCAGGTTGATGCATCTATGGATTTAGCTCTTCAG.........................................................................................................................................................................................GAGTTTGCAAAAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACCAAGCAATGGTGGCACAGCTTGAACATCAATTTCGCTTAGGAAAACTTTCTATACAAGGATTATGGTTTTACTGCCAG..............................................................................CCAATGATGGGTTCGATGCAAGCACTGTCTATGGTGGTGAAAAAGGCTGCAGCGGATAACTGTGTTGGTTCTGCAGTCCTTAACCTCTTGCAAAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCACTGCATATCTTGGAATATTAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGTATGAAGGAGTGATTGATGATCCTTATGGTGAATTCTTTATTGCCGANGACAAGTCTCTTCAGAAG.......................................................................GAGAGTCTTTACTC-AGATTATGATGCCAAGTACTGGGCAACACGTTACAGCCTGAAAGATGAAATTCCTAGCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260474" ref_strand="+" ref_description="SGN-E260474 [cLEG-54-G11]">
      <seq>tcgatcgtccctttcttactggccaattttatcaggaaacaaagatttcgtctggaacttctgagtacaaggggttttctgcggaatcaagttccggagcagataaagctataggttgttaccatgccaccattcaggaattgattgttattgatgatcttctatctacccttattggaattgaaggacgctatatttcgatcaagaaagtccgagggaaggaggatgacataacctttcaggttgatgcatctatggatttagctcttcaggagtttgcaaaaaggctgttcccgttatgcgaaagttatatcttgattaaccagtttgtggagacaaggtcacagttcaagacaggcctagtcaatcatgcctttgctgcagctctaagggcactcctccttgactaccaagcaatggtggcacagcttgaacatcaatttcgcttaggaaaactttctatacaaggattatggttttactgccagccaatgatgggttcgatgcaagcactgtctatggtggtgaaaaaggctgcagcggataactgtgttggttctgcagtccttaacctcttgcaaagccaggcaaaggcaatggctggtgatcatgtagtgaggtctttgctggaaaagatgtcacaatcagcaagcactgcatatcttggaatattagagaggtgggtgtatgaaggagtgattgatgatccttatggtgaaattcttattgccgagaaacagtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="80764" stop="85492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81064" g_stop="81098" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81099" i_stop="81284" i_length="186">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81285" g_stop="81340" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="91" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81341" i_stop="81510" i_length="170">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81511" g_stop="81556" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="137" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81557" i_stop="81986" i_length="430">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81987" g_stop="82121" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="272" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82122" i_stop="82306" i_length="185">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82307" g_stop="82438" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="404" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82439" i_stop="82946" i_length="508">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.280" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82947" g_stop="83030" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="488" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83031" i_stop="83108" i_length="78">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83109" g_stop="83207" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="587" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83208" i_stop="84506" i_length="1299">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84507" g_stop="84598" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="679" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="84599" i_stop="85124" i_length="526">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="85125" g_stop="85192" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="747" r_length="68" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E260474" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81064" e_stop="81098"/>
          <exon e_start="81285" e_stop="81340"/>
          <exon e_start="81511" e_stop="81556"/>
          <exon e_start="81987" e_stop="82121"/>
          <exon e_start="82307" e_stop="82438"/>
          <exon e_start="82947" e_stop="83030"/>
          <exon e_start="83109" e_stop="83207"/>
          <exon e_start="84507" e_stop="84598"/>
          <exon e_start="85125" e_stop="85192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCGTCCCTTTCTTACTGGCCAATTTTATCAGGTACTCAACATTTTATTGCTTGACATATGTATGCAATAAACCCCTTCATGCCGTTATCTAAAACCTTCATTTTCTTGGACTTTTTCGACTCTTCATGAATGCTGCTTTTTTCCGCCCTTCTTTTCTTCTTTTTCTTGATGTCCTAGGTTGAATTGAAACTATTTTGCCCCTTGAAAATACATACAGGAAACAAAGATTTCGTCTGGAACTTCTGAGTACAAGGGGTTTTCTGCGGAATCAAGGTTCCCCTTTTATTCCTTGGCTTTCTGCTATTACAATTCAATTTTTTTTTTTTTTTTAATAATGTGTTTTATCTTGGTGTGTTTGATTTACTTTTTTAAGTCAAATTGGTGACTTCTATTTGGTACATCTCCTACTTATTTTCTGTTTCTGTCTGGAAATTTTAATGCAGTTCCGGAGCAGATAAAGCTATAGGTTGTTACCATGCCACCATTCAGGTATGCCTCTGCTGAATCAAATAGGTTGTTCCTTATCCATCTTTTTATAATTTTTGTTCATATTGTTGTTGGTTGTCACTCTTATTGTTATTGTTATCATCTAGTATAATGCCAGTAAGAAGAAGTTATATATTTGACTCCAAACGTATACACCTGGATCATAAGTTCTAACGAGACTGTAGTCAACTTATGTCATGTTTTCTTCTTGTGTGTGTGTTGATATAGTTTGCAAGTTAAGGTCCTGTGAATATTTGTGTATTTTCTTGCTTTAAGTTTTAAGGTTAAGGATAGTGAGGACTATTATGTTGTGGCCCATCTAAATGGTTTTTCTTGTTAATATGTTATGTCCTATATGAACTTGACGATCTTGGTTTTGAGTTTGGTCAGGGTCACCGTCATTTATTAAAATATTGTCTTAACTATTATGCAGGAATTGATTGTTATTGATGATCTTCTATCTACCCTTATTGGAATTGAAGGACGCTATATTTCGATCAAGAAAGTCCGAGGGAAGGAGGATGACATAACCTTTCAGGTTGATGCATCTATGGATTTAGCTCTTCAGGTACTTATAGGGAGATATGTTTTCTGTAAAAATAGCTAACGAAAAAATGAGACATTTCATCCCTGATATATAGTGTTCTAAAGCAACGAAATATTTTGAGGCTAAAAGCCAAGTAAACATGAAAGAAAATCCATAGCGTATTTAGTTTAAAACATTAGCTGAAATAATTTGGGCTATTATTGTAGGAGTTTGCAAAAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTTGTAAGTTTCTTATTTATTGATCCTTCTATGGTTGCATGGTGGATTATTCTTTTCTCTACTTGTTTATCTGGTATGTTATCCATCTTATGTATAAGCTCTTCTTGAGGATGTCTAAATTTTATATTTGAGAAATCATTTCTGGGAGGATTGAATCATCTTCATTATTTGTTTAATCTCTTTTTGGATACTGTAGATTCTCTCCTCCTTGGTATAGCTTGTATATGGTTCAATTATTACTAAAAAAATTATTACCTTACAAAATAAAAATCTCTTTTTGTGGATGGATTAATGTGACTTTCAGAAGATTATCTCCTGGGAAGCTGAGAAAACCTGTCTGCTACCTTAATTTGGTTCAGCTAATTGTCTAAGGTTTTTGGATGCCATGAGTTGTTTCCATAATTGTCCCATGCTGTGTGGACATACATGTACAATGTAGTATTAAGAGAAAGAATAATAAAGGAAAATAAAAAGGGAGAGCTAATTGAAGTCTAGAATATATTTTTTCCAGGACTACCAAGCAATGGTGGCACAGCTTGAACATCAATTTCGCTTAGGAAAACTTTCTATACAAGGATTATGGTTTTACTGCCAGGTAACGCTGCTTAAACTGGTTTAATTTCCATTCAGTTTGACTCCTCGTCATTGGTGCTTATGAAGCTATGTCTTGCAGCCAATGATGGGTTCGATGCAAGCACTGTCTATGGTGGTGAAAAAGGCTGCAGCGGATAACTGTGTTGGTTCTGCAGTCCTTAACCTCTTGCAAAGCCAGGTCTAACATCTTAGTCACTTTTCATGACTTTAAGGATCTATGTCTGAGTTCCCCTGGAATTGTGGAATACCATAGATTCATTACGATGGTTTAAATTCCATATTTGCTTGAACATTTGTGGTTTGGTTTCGCATGGTTATCAAAATGAGACCTGCAATTTTTATGTTTTAAGGGGTCGTTTGGTAGTGTATTAGTAATGCATGTATTAGTTATGCTTGCATTCATTATTCAATAATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAAATAGCATTTATTGCATAAAAAAGTTATTTACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTATAAAAAGTTTTGAGGGATAATTGGGTCTTTAATTGAGTTAATGCATGCATTAAAAACCATTGCATTGCTAATACCTAGAAATATATGGTATTACTAATGCACACCTTAATACACAATAGAGTGTATAACTAATGCAAGTTAGTTATACATAAATTAGAAAAGAGTACCAAACAAGGTACTAGTAATACACAAGGCTAATGCATGCATTATTTTTCCTAATACACTCGGTCAAACGACCCCTAATAATTTTAGTTAATTAGTCTTTCTCATTCCAAAATCTTCATGGGAAGTTTGAACAGATTTTAAGTGTCTGTGATAGACTCTATTTTGATATGTTTAGAATTGTTGAGAAAATAAGATAAGGAACAACCCTTGGGGTTCATCTCAATTGGCAAAGGTTGAGGGACTTTGATCTTAAATCACTAGTGTGAGTCCTATGCCAAACGAATTAAGACTAGTTTATGTGGAGAATGGTAAAAGGCGGAGCCATCATCCTGGATTTCTGGAAACTGCAGTTGGCCCAAAGGGTTGGTTCCGAACGAGTTTCTTGGTCATAAAAAACATAAGAAGGAATAATTGGTTCTCACACAACATTCACGAAATAGAGAGCTAATGCAAACAGACATGAAAGTAATCTGTAACAATAGTGGTGGCTATTTTTCTTCTTTTTGAACGTCTCTGGTGACTGCAACAACGAGAATTATATTACCAATGCTATGATACCATCTGAACAAATAAAACATGGAATAATTGAGTGAAAACTTAGCTTGATTACTCCCTCAAGTTGCTGGACTTAAAAAGTGAATGTACGACAGTACGAGTGTTAAAATAGGGAAGAATCTCTCTAATTAGTCCTAGTTGGTATACAGTATCATTTACAATTTTCTTTACAGAAACTACATATGTTCTATTTGATCAGAGGGGGTCTATATTTATTTCCAGATTAATTGTTCTGTTTTAGGCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCACTGCATATCTTGGAATATTAGAGAGGTACTTAATCTAGATTCTGCAATGATTATCCAAGTTTGCTTAAGGTCTGGCTGACCTCTCATTGTCTGGGAATTGCCTAATCAAATATTGTTTTGTCCTAAAATAACATGTTTCTACTTTTTGTTAAGTGTAAAAGAAGTTGGTGATACATAAATCGCCAGGGTTAAAGGAGTAGTGGTTCCTATATCTGCTATTTGATCTTGACGTGTCTATGCTAATAATGTCTACTTGGGGAATCAGCTGATGTAGTTATAACACATATTAAAAAGTAGTGTAGGTTTCCTTCAACAATGAGTTTCCGCTAAATTGGTAATGCATTTTTTTAATCTTTATACTATTCCCATGATAATAAGCAAGTAAAGTACTTGTTTTCTTGTCTTCTAGAGTAAATGTTAGGTTTTCATCAGCTGCCTTTTGTAGGTATTAAGTGTGTCGCTTTTTCTCGTTTTTTGACAGTCTTTGAACTTCCCGTTCTTTTATAGTGAATTACTGTTGTTTCTCAATGTGAACTACCCTAAAATTTCAGGTGGGTGTATGAAGGAGTGATTGATGATCCTTATGGTGAATTCTTTATTGCCGAGAACAAGTCTCTTC</genome_strand>
        <mrna_strand>TCGATCGTCCCTTTCTTACTGGCCAATTTTATCAG..........................................................................................................................................................................................GAAACAAAGATTTCGTCTGGAACTTCTGAGTACAAGGGGTTTTCTGCGGAATCAAG..........................................................................................................................................................................TTCCGGAGCAGATAAAGCTATAGGTTGTTACCATGCCACCATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGATTGTTATTGATGATCTTCTATCTACCCTTATTGGAATTGAAGGACGCTATATTTCGATCAAGAAAGTCCGAGGGAAGGAGGATGACATAACCTTTCAGGTTGATGCATCTATGGATTTAGCTCTTCAG.........................................................................................................................................................................................GAGTTTGCAAAAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACCAAGCAATGGTGGCACAGCTTGAACATCAATTTCGCTTAGGAAAACTTTCTATACAAGGATTATGGTTTTACTGCCAG..............................................................................CCAATGATGGGTTCGATGCAAGCACTGTCTATGGTGGTGAAAAAGGCTGCAGCGGATAACTGTGTTGGTTCTGCAGTCCTTAACCTCTTGCAAAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCACTGCATATCTTGGAATATTAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGTATGAAGGAGTGATTGATGATCCTTATGGTGAAATTCTTATTGCCGAGAAACAGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309510" ref_strand="+" ref_description="SGN-E309510 [cTOA-3-K19]">
      <seq>aaaggctgttcccgttatgccaaagttatatcttgattaaccagtttgtggagacaaggtcacagttcaagacaggcctagtcaatcatgcctttgctgcagctctaagggcactcctccttgactaccaagcaatggtggcacagcttgaacatcaatttcgcttaggaaaactttctatacaaggattatggttttactgccagccaatgatgggttcgatgcaagcactgtctatggtggtgaaaaaggctgcagcggataactgtgttggttctgcagtccttaacctcttgcaaagccaggcaaaggcaatggctggtgatcatgtagtgaggtctttgctggaaaagatgtcacaatcagcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="82017" stop="84873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82317" g_stop="82438" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82439" i_stop="82946" i_length="508">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.280" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82947" g_stop="83030" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="206" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83031" i_stop="83108" i_length="78">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83109" g_stop="83207" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="305" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83208" i_stop="84506" i_length="1299">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84507" g_stop="84573" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="372" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E309510" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82317" e_stop="82438"/>
          <exon e_start="82947" e_stop="83030"/>
          <exon e_start="83109" e_stop="83207"/>
          <exon e_start="84507" e_stop="84573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTTGTAAGTTTCTTATTTATTGATCCTTCTATGGTTGCATGGTGGATTATTCTTTTCTCTACTTGTTTATCTGGTATGTTATCCATCTTATGTATAAGCTCTTCTTGAGGATGTCTAAATTTTATATTTGAGAAATCATTTCTGGGAGGATTGAATCATCTTCATTATTTGTTTAATCTCTTTTTGGATACTGTAGATTCTCTCCTCCTTGGTATAGCTTGTATATGGTTCAATTATTACTAAAAAAATTATTACCTTACAAAATAAAAATCTCTTTTTGTGGATGGATTAATGTGACTTTCAGAAGATTATCTCCTGGGAAGCTGAGAAAACCTGTCTGCTACCTTAATTTGGTTCAGCTAATTGTCTAAGGTTTTTGGATGCCATGAGTTGTTTCCATAATTGTCCCATGCTGTGTGGACATACATGTACAATGTAGTATTAAGAGAAAGAATAATAAAGGAAAATAAAAAGGGAGAGCTAATTGAAGTCTAGAATATATTTTTTCCAGGACTACCAAGCAATGGTGGCACAGCTTGAACATCAATTTCGCTTAGGAAAACTTTCTATACAAGGATTATGGTTTTACTGCCAGGTAACGCTGCTTAAACTGGTTTAATTTCCATTCAGTTTGACTCCTCGTCATTGGTGCTTATGAAGCTATGTCTTGCAGCCAATGATGGGTTCGATGCAAGCACTGTCTATGGTGGTGAAAAAGGCTGCAGCGGATAACTGTGTTGGTTCTGCAGTCCTTAACCTCTTGCAAAGCCAGGTCTAACATCTTAGTCACTTTTCATGACTTTAAGGATCTATGTCTGAGTTCCCCTGGAATTGTGGAATACCATAGATTCATTACGATGGTTTAAATTCCATATTTGCTTGAACATTTGTGGTTTGGTTTCGCATGGTTATCAAAATGAGACCTGCAATTTTTATGTTTTAAGGGGTCGTTTGGTAGTGTATTAGTAATGCATGTATTAGTTATGCTTGCATTCATTATTCAATAATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAAATAGCATTTATTGCATAAAAAAGTTATTTACAAAGATACCCTCCACTATTATGGTGGAAAAGATGTATAAAAAGTTTTGAGGGATAATTGGGTCTTTAATTGAGTTAATGCATGCATTAAAAACCATTGCATTGCTAATACCTAGAAATATATGGTATTACTAATGCACACCTTAATACACAATAGAGTGTATAACTAATGCAAGTTAGTTATACATAAATTAGAAAAGAGTACCAAACAAGGTACTAGTAATACACAAGGCTAATGCATGCATTATTTTTCCTAATACACTCGGTCAAACGACCCCTAATAATTTTAGTTAATTAGTCTTTCTCATTCCAAAATCTTCATGGGAAGTTTGAACAGATTTTAAGTGTCTGTGATAGACTCTATTTTGATATGTTTAGAATTGTTGAGAAAATAAGATAAGGAACAACCCTTGGGGTTCATCTCAATTGGCAAAGGTTGAGGGACTTTGATCTTAAATCACTAGTGTGAGTCCTATGCCAAACGAATTAAGACTAGTTTATGTGGAGAATGGTAAAAGGCGGAGCCATCATCCTGGATTTCTGGAAACTGCAGTTGGCCCAAAGGGTTGGTTCCGAACGAGTTTCTTGGTCATAAAAAACATAAGAAGGAATAATTGGTTCTCACACAACATTCACGAAATAGAGAGCTAATGCAAACAGACATGAAAGTAATCTGTAACAATAGTGGTGGCTATTTTTCTTCTTTTTGAACGTCTCTGGTGACTGCAACAACGAGAATTATATTACCAATGCTATGATACCATCTGAACAAATAAAACATGGAATAATTGAGTGAAAACTTAGCTTGATTACTCCCTCAAGTTGCTGGACTTAAAAAGTGAATGTACGACAGTACGAGTGTTAAAATAGGGAAGAATCTCTCTAATTAGTCCTAGTTGGTATACAGTATCATTTACAATTTTCTTTACAGAAACTACATATGTTCTATTTGATCAGAGGGGGTCTATATTTATTTCCAGATTAATTGTTCTGTTTTAGGCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCA</genome_strand>
        <mrna_strand>AAAGGCTGTTCCCGTTATGCCAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACCAAGCAATGGTGGCACAGCTTGAACATCAATTTCGCTTAGGAAAACTTTCTATACAAGGATTATGGTTTTACTGCCAG..............................................................................CCAATGATGGGTTCGATGCAAGCACTGTCTATGGTGGTGAAAAAGGCTGCAGCGGATAACTGTGTTGGTTCTGCAGTCCTTAACCTCTTGCAAAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395710" ref_strand="+" ref_description="SGN-E395710 [TUS-17-M24]">
      <seq>atttctttctacaatggcagagcaacaaagaattcatccagtacctgaaccagaacatgaacttccagtacaaaaaccctctgtccctttagtgccaaagggctctttcagttcagaaaaaggtgaccctgagaaacagcagcagcagcagcaaccaccttttagaagaacaatcccatattatccaccattaaaaccaccaaagagaagatgttgttcttgcaaaagatgtctatgttgcacatgttgtctgttggttatcacccacataaaaaatggcgccttatctgcgcgcctttttatttgttctcccccccaaaaaaacaaaatactccgttgacagtatgagaatcacacagttcaatttcaataatgacatgagcttattgtttgctactttttatggtaagatcaccgcgagaaaccccaccaagaagattgggatttactatgaaaatggtagccaattgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="91068" stop="92139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91368" g_stop="91839" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E395710" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91368" e_stop="91839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTTCTACAATGGCAGAGCAACAAAGAATTCATCCAGTACCTGAACCAGAACATGAACTTCCAGTACAAAAACCCTCTGTCCCTTTAGTGCCAAAGGGCTCTTTCAGTTCAGAAAAAGGTGACCCTGAGAAACAGCAGCAGCAGCAGCAACCACCTTTTAGAAGAACAATCCCATATTATCCACCATTAAAACCACCAAAGAGAAGATGTTGTTCTTGCAAAAGATGTCTATGTTGCACATGTTGTCTGTTGTTCATCATCATCATAATCATTGCTGCTTTATCTGC-TGCTTTTTACTTTGTCTTCCAGCCAAAAATACCAAAGTACTCCGTTGACAGTATGAGAATCACACAGTTCAATTTCAATAATGACATGAGCTTATTGTTTGCTACTTTTAATGTTAACATCACTGCAAGAAACCCCAACAAGAAGATTGGGATTTACTATGAAAATGGTAGCCAATTGAGT</genome_strand>
        <mrna_strand>ATTTCTTTCTACAATGGCAGAGCAACAAAGAATTCATCCAGTACCTGAACCAGAACATGAACTTCCAGTACAAAAACCCTCTGTCCCTTTAGTGCCAAAGGGCTCTTTCAGTTCAGAAAAAGGTGACCCTGAGAAACAGCAGCAGCAGCAGCAACCACCTTTTAGAAGAACAATCCCATATTATCCACCATTAAAACCACCAAAGAGAAGATGTTGTTCTTGCAAAAGATGTCTATGTTGCACATGTTGTCTGTTGGTTATCACCCACATAAAAAATGGCGCCTTATCTGCGCGCCTTTTTATTTGTTCTCCCCCCCAAAAAAACAAAATACTCCGTTGACAGTATGAGAATCACACAGTTCAATTTCAATAATGACATGAGCTTATTGTTTGCTACTTTTTATGGTAAGATCACCGCGAGAAACCCCACCAAGAAGATTGGGATTTACTATGAAAATGGTAGCCAATTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208403" ref_strand="+" ref_description="SGN-E208403 [cLEC-37-F23]">
      <seq>tttctttctacaatggccgagcaacaaagaattcatccagtacctgaaccacaacatgaacttgcagtacaaaaaccctctgtccctttagtgccgaagggctctttcagttcagaaaaaggtgaccctgagaaacaacatcagcagcagcaaccaccttttagaagaacaatcccatattatccaccattaaaaccaccaaagagaagatgttgttcttgcaaaagatgtctatgttgcacatgtcgtctgtggctcatcatcatcataatcattgctgctttatctgctgctttttactttgtcttccagccaaaaataccaaagtactccgttgacagtatgagaatcacacagttcaatgtcaataatgacatgagcttattgtttgctacttttaatgttaacatcactgcaagaaaccccaacaggaggattgggatttactatgaaaatggtagccaattgagtgtttggtatactggtgttcagctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="91069" stop="92166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91369" g_stop="91866" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E208403" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91369" e_stop="91866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTACAATGGCAGAGCAACAAAGAATTCATCCAGTACCTGAACCAGAACATGAACTTCCAGTACAAAAACCCTCTGTCCCTTTAGTGCCAAAGGGCTCTTTCAGTTCAGAAAAAGGTGACCCTGAGAAACAGCAGCAGCAGCAGCAACCACCTTTTAGAAGAACAATCCCATATTATCCACCATTAAAACCACCAAAGAGAAGATGTTGTTCTTGCAAAAGATGTCTATGTTGCACATGTTGTCTGTTGTTCATCATCATCATAATCATTGCTGCTTTATCTGCTGCTTTTTACTTTGTCTTCCAGCCAAAAATACCAAAGTACTCCGTTGACAGTATGAGAATCACACAGTTCAATTTCAATAATGACATGAGCTTATTGTTTGCTACTTTTAATGTTAACATCACTGCAAGAAACCCCAACAAGAAGATTGGGATTTACTATGAAAATGGTAGCCAATTGAGTGTTTGGTATACTGGTGTTCAGCTTTGT</genome_strand>
        <mrna_strand>TTTCTTTCTACAATGGCCGAGCAACAAAGAATTCATCCAGTACCTGAACCACAACATGAACTTGCAGTACAAAAACCCTCTGTCCCTTTAGTGCCGAAGGGCTCTTTCAGTTCAGAAAAAGGTGACCCTGAGAAACAACATCAGCAGCAGCAACCACCTTTTAGAAGAACAATCCCATATTATCCACCATTAAAACCACCAAAGAGAAGATGTTGTTCTTGCAAAAGATGTCTATGTTGCACATGTCGTCTGTGGCTCATCATCATCATAATCATTGCTGCTTTATCTGCTGCTTTTTACTTTGTCTTCCAGCCAAAAATACCAAAGTACTCCGTTGACAGTATGAGAATCACACAGTTCAATGTCAATAATGACATGAGCTTATTGTTTGCTACTTTTAATGTTAACATCACTGCAAGAAACCCCAACAGGAGGATTGGGATTTACTATGAAAATGGTAGCCAATTGAGTGTTTGGTATACTGGTGTTCAGCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311092" ref_strand="+" ref_description="SGN-E311092 [cLEZ-16-A12]">
      <seq>ggcagagctacaaagaattcatccagtacctgaaccagaacatgaacttccagtacaaaaaccctctgtccctttagtgccaaagggctctttcagttcagaaaaaggtgaccctgagaaacagcagcagcagcagcaaccaccttttagaagaacaatcccatattatccaccattaaaaccaccaaagagaagatgttgttcttgcaaaagatgtctatgttgcacatgttgtctgttgttcatcatcatcataatcattgctgctttatctgctgctttttactttgtcttccagccaaaaataccaaagtactccgttgacagtatgagaatcacacagttcaatttcaataatgacatgagcttattgtttgctacttttaatgttaacatcactgcaagaaaccccaacaagaagattgggatttactatgaaaatggtagccaattgagtgtttggtatactggtgttcagctttgtgaagggtcattgccaagattttatcagggtcatcagaatactactgtactcagtttggatttatcaggacaaacacagaatgttactggattgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="91083" stop="92264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91383" g_stop="91964" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E311092" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91383" e_stop="91964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGAGCAACAAAGAATTCATCCAGTACCTGAACCAGAACATGAACTTCCAGTACAAAAACCCTCTGTCCCTTTAGTGCCAAAGGGCTCTTTCAGTTCAGAAAAAGGTGACCCTGAGAAACAGCAGCAGCAGCAGCAACCACCTTTTAGAAGAACAATCCCATATTATCCACCATTAAAACCACCAAAGAGAAGATGTTGTTCTTGCAAAAGATGTCTATGTTGCACATGTTGTCTGTTGTTCATCATCATCATAATCATTGCTGCTTTATCTGCTGCTTTTTACTTTGTCTTCCAGCCAAAAATACCAAAGTACTCCGTTGACAGTATGAGAATCACACAGTTCAATTTCAATAATGACATGAGCTTATTGTTTGCTACTTTTAATGTTAACATCACTGCAAGAAACCCCAACAAGAAGATTGGGATTTACTATGAAAATGGTAGCCAATTGAGTGTTTGGTATACTGGTGTTCAGCTTTGTGAAGGGTCATTGCCAAGATTTTATCAGGGTCATCAGAATACTACTGTACTCAGTTTGGATTTATCAGGACAAACACAGAATGTTACTGGATTGTTGCA</genome_strand>
        <mrna_strand>GGCAGAGCTACAAAGAATTCATCCAGTACCTGAACCAGAACATGAACTTCCAGTACAAAAACCCTCTGTCCCTTTAGTGCCAAAGGGCTCTTTCAGTTCAGAAAAAGGTGACCCTGAGAAACAGCAGCAGCAGCAGCAACCACCTTTTAGAAGAACAATCCCATATTATCCACCATTAAAACCACCAAAGAGAAGATGTTGTTCTTGCAAAAGATGTCTATGTTGCACATGTTGTCTGTTGTTCATCATCATCATAATCATTGCTGCTTTATCTGCTGCTTTTTACTTTGTCTTCCAGCCAAAAATACCAAAGTACTCCGTTGACAGTATGAGAATCACACAGTTCAATTTCAATAATGACATGAGCTTATTGTTTGCTACTTTTAATGTTAACATCACTGCAAGAAACCCCAACAAGAAGATTGGGATTTACTATGAAAATGGTAGCCAATTGAGTGTTTGGTATACTGGTGTTCAGCTTTGTGAAGGGTCATTGCCAAGATTTTATCAGGGTCATCAGAATACTACTGTACTCAGTTTGGATTTATCAGGACAAACACAGAATGTTACTGGATTGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551531" ref_strand="+" ref_description="SGN-E551531 [cTSB-1-A18]">
      <seq>ctcccttttctcatacttcctctcaaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100868" stop="81082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100568" g_stop="100408" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="237" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="410" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99119" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="599" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99118" i_stop="97707" i_length="1412">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97706" g_stop="97691" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="615" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E551531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100568" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99119"/>
          <exon e_start="97706" e_stop="97691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACTGTTTTCAGTGTTTGCCATTTTTAGTTACAGTGATTTTATTATGATTTGGAAGGAAATTGGCATTGCTCAAGACTATTGTAACATGACTTCATGTTTGGAATCGTTTGATCTTAACTAGGTCTTGTTAGTAAATATGACGAAGTGTTTGATTTATGTGACCATCTCATATAGGGAAAACATTTTATTTGGTATTTTAGGCACGTAACATGCTCTTTAATGCCCGAGCTTGATTCTTTTTCATGCATAATATATGTACTATTAGGACCTGTTTGGTAGGCGGTATTAGGTAAAATAATACATGGATTAAAATTTAATCCATTGTTGGTTACTTCATTTAATTTAATCCATGAATTGCTTATCCATCATATGTGGTATTATCTTATCTCTTGGAAATCGAGGGATAACTTATCCAAGGTTTGTTAAACCTTGAATAAGATCCCTAATGACCCTTTATTCTTTTTTTAAATTTCTTTTGTAGTTTAATTTCCTTTTTATTTATATTGGAGTGGTTATAAATATTTTTTTTAATTCTCCAAATTCGTTTGTTGTAATTTAATGATTTTACTAATATTTTTTTTCTCCATTTTTTCTCCATTTTTTTTTATATTTATGATAATTTGTCAATTACCCACTTGAACTATTTGTTTTAAAAATAAAAATAAAAATAAGCTTACCGTATTAACAATTTAAGTAGTCTTAAATCTATGCTAAGTTTAAGATATATACTTGACCCACAAAAAATTAGAAATACATTGTGCCATCACTGATCTTCTTAGTGGTACATCATACCTTAAAATTAATAACAATTATATATATATTTGATTTAACTAATTAAATAGAATAAATTCTTTAAAAAAATTATCCGGCCCGGTGATTATCTACCTTGATTCAATTATATGAAATAAACACTCATAATAACACAAGGGAATAATAGGAAAGAATTTTTTTGTATAATTATAAATTGAACACAAAATTAAGTGGAAAATAGTGAATCAAACACTTGACAAAAAATAATCCCTACACTATTAATCCCTGCATTTACTAATCTCTGCATTATTAATCCCTGCATTACTAATCCGTGCACTATCAATGTTTGTACCAAACAAACCCCTTAATGTTTTGAATTACCTAAGAGCAAAACTGGTTGGTTCAAGAAATGAAAAATGGTATGTTTGGATTACTTCAATCCAGAGGCTGGTTTTGTAAAGACTAGTTGGGATAGTCACCCCAGTTAGTAGCTTTGCTCAGGTTTTAATACCTAATCCATAAGCTCAAAATTTTAGCTTGGTAAGTGGGGGACTTTCGTTTGAACATTTTAGTTATGTGATTCAAATAAATAAAAATTCCAAACTTGTATTGGGAATTTCAACTTCAACAAAGAAAAAAAGGAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>CTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552951" ref_strand="+" ref_description="SGN-E552951 [cTSB-5-I7]">
      <seq>ctcccttttctcatacttcctctcaaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100868" stop="81082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100568" g_stop="100408" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="237" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="410" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99119" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="599" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99118" i_stop="97707" i_length="1412">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97706" g_stop="97691" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="615" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E552951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100568" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99119"/>
          <exon e_start="97706" e_stop="97691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACTGTTTTCAGTGTTTGCCATTTTTAGTTACAGTGATTTTATTATGATTTGGAAGGAAATTGGCATTGCTCAAGACTATTGTAACATGACTTCATGTTTGGAATCGTTTGATCTTAACTAGGTCTTGTTAGTAAATATGACGAAGTGTTTGATTTATGTGACCATCTCATATAGGGAAAACATTTTATTTGGTATTTTAGGCACGTAACATGCTCTTTAATGCCCGAGCTTGATTCTTTTTCATGCATAATATATGTACTATTAGGACCTGTTTGGTAGGCGGTATTAGGTAAAATAATACATGGATTAAAATTTAATCCATTGTTGGTTACTTCATTTAATTTAATCCATGAATTGCTTATCCATCATATGTGGTATTATCTTATCTCTTGGAAATCGAGGGATAACTTATCCAAGGTTTGTTAAACCTTGAATAAGATCCCTAATGACCCTTTATTCTTTTTTTAAATTTCTTTTGTAGTTTAATTTCCTTTTTATTTATATTGGAGTGGTTATAAATATTTTTTTTAATTCTCCAAATTCGTTTGTTGTAATTTAATGATTTTACTAATATTTTTTTTCTCCATTTTTTCTCCATTTTTTTTTATATTTATGATAATTTGTCAATTACCCACTTGAACTATTTGTTTTAAAAATAAAAATAAAAATAAGCTTACCGTATTAACAATTTAAGTAGTCTTAAATCTATGCTAAGTTTAAGATATATACTTGACCCACAAAAAATTAGAAATACATTGTGCCATCACTGATCTTCTTAGTGGTACATCATACCTTAAAATTAATAACAATTATATATATATTTGATTTAACTAATTAAATAGAATAAATTCTTTAAAAAAATTATCCGGCCCGGTGATTATCTACCTTGATTCAATTATATGAAATAAACACTCATAATAACACAAGGGAATAATAGGAAAGAATTTTTTTGTATAATTATAAATTGAACACAAAATTAAGTGGAAAATAGTGAATCAAACACTTGACAAAAAATAATCCCTACACTATTAATCCCTGCATTTACTAATCTCTGCATTATTAATCCCTGCATTACTAATCCGTGCACTATCAATGTTTGTACCAAACAAACCCCTTAATGTTTTGAATTACCTAAGAGCAAAACTGGTTGGTTCAAGAAATGAAAAATGGTATGTTTGGATTACTTCAATCCAGAGGCTGGTTTTGTAAAGACTAGTTGGGATAGTCACCCCAGTTAGTAGCTTTGCTCAGGTTTTAATACCTAATCCATAAGCTCAAAATTTTAGCTTGGTAAGTGGGGGACTTTCGTTTGAACATTTTAGTTATGTGATTCAAATAAATAAAAATTCCAAACTTGTATTGGGAATTTCAACTTCAACAAAGAAAAAAAGGAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>CTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722083" ref_strand="+" ref_description="SGN-E722083 [FC16AF04]">
      <seq>atcaattctcccttttctcatacttcctctcaaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcaaaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtatcaagttacctcatctgcatactgttttcagtgtttgccatttttagttacagtgattttattatgatttggaaggaaattggcattgctcaagactattgtaacatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100875" stop="98709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100575" g_stop="100408" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="244" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="417" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99006" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="719" r_length="302" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E722083" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100575" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTCTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACTGTTTTCAGTGTTTGCCATTTTTAGTTACAGTGATTTTATTATGATTTGGAAGGAAATTGGCATTGCTCAAGACTATTGTAACATGACTT</genome_strand>
        <mrna_strand>ATCAATTCTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAAAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACTGTTTTCAGTGTTTGCCATTTTTAGTTACAGTGATTTTATTATGATTTGGAAGGAAATTGGCATTGCTCAAGACTATTGTAACATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354911" ref_strand="+" ref_description="SGN-E354911 [cTOS-19-G13]">
      <seq>aaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatngtctttttatgtctggtttggcattaatatgaattgaattggtactttctgtattccagtacctcatctgcatactggtttcagtgtttgcatttttaagtacagtgattttattatgattttgaaaggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100826" stop="98739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100526" g_stop="100408" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="195" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="368" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99040" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="635" r_length="267" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="648"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E354911" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100526" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGAT-GTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTA-TCAAGTTACCTCATCTGCATACTGTTTTCAGTGTTTGCCATTTTTAGTTACAGTGATTTTATTATGATTTGGAAGGAA</genome_strand>
        <mrna_strand>AAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATNGTC-TTTTTATGTCTGGTTTGGCATTAATATGAATTGAATTGGTACTTTCTGTATTCCAG-TACCTCATCTGCATACTGGTTTCAGTGTTTG-CATTTTTAAGTACAGTGATTTTATTATGATTTTGAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310908" ref_strand="+" ref_description="SGN-E310908 [cLEZ-17-B23]">
      <seq>ctcgtgccgaattcggcacgagggtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtatcaagttacctcatctgcatactgttttcagtgtttgccatttttagttacagtgattttattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100761" stop="98751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100457" g_stop="100408" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="72" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="148" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="321" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99051" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="578" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E310908" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100457" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACTGTTTTCAGTGTTTGCCATTTTTAGTTACAGTGATTTTATTATGA</genome_strand>
        <mrna_strand>GGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACTGTTTTCAGTGTTTGCCATTTTTAGTTACAGTGATTTTATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284622" ref_strand="+" ref_description="SGN-E284622 [cLES-3-L19]">
      <seq>gcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtatcaagttacctcatctgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100540" stop="98797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100414" g_stop="100408" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="83" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="256" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99090" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="474" r_length="218" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E284622" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100414" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACTGTTTT</genome_strand>
        <mrna_strand>GCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312515" ref_strand="+" ref_description="SGN-E312515 [cLEZ-20-P1]">
      <seq>aaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtatcaagttacctcatctgcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100844" stop="98795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100544" g_stop="100408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="213" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="386" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99095" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="599" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E312515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100544" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACT</genome_strand>
        <mrna_strand>AAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288217" ref_strand="+" ref_description="SGN-E288217 [cLES-7-L20]">
      <seq>ttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattgggactttctgtatcaagttacctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100810" stop="98805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100510" g_stop="100408" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="179" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="352" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99095" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="565" r_length="213" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E288217" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100510" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACT</genome_strand>
        <mrna_strand>TTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGGACTTTCTGTATCAAGTTACCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244126" ref_strand="+" ref_description="SGN-E244126 [cLEE-1-M21]">
      <seq>ctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatgcaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtatcaagttacctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100743" stop="98805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100443" g_stop="100408" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="112" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="285" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99095" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="498" r_length="213" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E244126" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100443" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACT</genome_strand>
        <mrna_strand>CTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATGCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288787" ref_strand="+" ref_description="SGN-E288787 [cLES-17-C10]">
      <seq>aaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtatcaagttacctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100829" stop="98805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100529" g_stop="100408" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="198" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="371" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99096" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="583" r_length="212" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E288787" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100529" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATAC</genome_strand>
        <mrna_strand>AAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244127" ref_strand="+" ref_description="SGN-E244127 [cLEE-1-M21](-)">
      <seq>ctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtatcaagttacctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100743" stop="98805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100443" g_stop="100408" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="112" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="285" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99096" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="497" r_length="212" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E244127" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100443" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATAC</genome_strand>
        <mrna_strand>CTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353703" ref_strand="+" ref_description="SGN-E353703 [cTOS-10-C9]">
      <seq>catacttcctctcaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattgntactttctgtatcaagttacctcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100857" stop="98805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100557" g_stop="100408" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="225" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="398" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99100" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="606" r_length="208" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E353703" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100557" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGC</genome_strand>
        <mrna_strand>CATACTTCCTCTC-AAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGNTACTTTCTGTATCAAGTTACCTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295265" ref_strand="+" ref_description="SGN-E295265 [cLET-20-B19]">
      <seq>tcatacttcctctcaaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtatcaagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100858" stop="98808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100558" g_stop="100408" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="227" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="400" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99108" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="600" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E295265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100558" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACC</genome_strand>
        <mrna_strand>TCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344464" ref_strand="+" ref_description="SGN-E344464 [cTOF-14-O4]">
      <seq>aaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100844" stop="98814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100544" g_stop="100408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="213" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="386" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99109" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="585" r_length="199" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E344464" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100544" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTAC</genome_strand>
        <mrna_strand>AAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578242" ref_strand="+" ref_description="SGN-E578242 [LE12BC01]">
      <seq>caaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100845" stop="98818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100545" g_stop="100408" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="214" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="387" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99115" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="580" r_length="193" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E578242" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100545" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCA</genome_strand>
        <mrna_strand>CAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286874" ref_strand="-" ref_description="SGN-E286874 [cLES-14-F4]">
      <seq>gtccgccaaagtgcaaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttatttccagtaagaaatgatgtcttttttatgtctgttttgtcattaatatgaattgaattggtactttctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100845" stop="98818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100559" g_stop="100408" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="227" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="400" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99116" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="592" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E286874" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286874" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100559" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATC</genome_strand>
        <mrna_strand>GTCCGCCAAAGT-GCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291637" ref_strand="+" ref_description="SGN-E291637 [cLET-6-N16]">
      <seq>tcatacttcctctcaaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtgattccctttatttccagtaagaaatgatgtcttttttatgtctggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100858" stop="98853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100558" g_stop="100408" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="227" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="400" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99152" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="556" r_length="156" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E291637" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100558" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTT</genome_strand>
        <mrna_strand>TCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTGATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278149" ref_strand="+" ref_description="SGN-E278149 [cLER-9-C9]">
      <seq>acaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattccctttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100841" stop="98887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100541" g_stop="100408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="210" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="383" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99187" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="504" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E278149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100541" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTT</genome_strand>
        <mrna_strand>ACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298476" ref_strand="+" ref_description="SGN-E298476 [cLET-41-M15]">
      <seq>aaatcgtaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcacaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgttcatattgaatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagttaattttcttatgtcatgaatattagtctcaaatagagtaacctccttgtaattcccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100836" stop="98890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100536" g_stop="100408" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="205" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="378" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99190" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="496" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E298476" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100536" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTA</genome_strand>
        <mrna_strand>AAATCGTAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCACAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTCATATTGAATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297719" ref_strand="+" ref_description="SGN-E297719 [cLET-28-M2]">
      <seq>gaaaaaaaccatggccggagttgaattcctgcccaaagaatatggatatgtaattcttgctcttggcggctactgattcttcaacttctggatgtcctttcaagtcgggaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgcgttcagagaggtcatcctaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaagcaccccttgatttgtgcatatcttggagctgaggatattgtatctcgctatttctacttcactggttattccactggcgaaccccaaaatcggcttactcttgggaaatacaatttcttggcaattatggcactgatgatttgcgcagcatcttgtggagctaattttcttatgtcatgaatattagtctcaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100830" stop="98915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100530" g_stop="100408" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="199" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="372" r_length="173" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99307" g_stop="99215" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="465" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E297719" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100530" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
          <exon e_start="99307" e_stop="99215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTTTGAGGGATTTGGTGGATCATCGCTGTATAGTTTTTAGGGTTAAATTTATCTCGTGTTTGGTTGTAGGCATTCTACATAGATGGTGGGATCCATTATCCAAGCTATAATCTTGGTTTTAATCCTTGGATATCCTTGTTTTGAATGAGACGACCCCTTAAGGTTAAATGTCTTTGTTTTAATATAAACATGGAGTATTTTTATCTGGTTGCGGGGGATTAGAATGGAAAAGTTTATGAAATGGTGTGTAATGTTTTGAATGCTAATTATAATGGTTTTACTTCTGTGCAGGAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAG</genome_strand>
        <mrna_strand>GAAAAAAACCATGGCCGGAGTTGAATTCCTGCCCAAAGAATATGGATATGTAATTCTTGCTCTTGGCGGCTACTGATTCTTCAACTTCTGGATGTCCTTTCAAGTCGGGAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGCGTTCAG.......................................................................................AGAGGTCATCCTAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAAGCACCCCTTGATTTGTGCATATCTTGGAGCTGAGGATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGAACCCCAAAATCGGCTTACTCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGCTAATTTTCTTATGTCATGAATATTAGTCTCAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212589" ref_strand="+" ref_description="SGN-E212589 [cLEC-74-D8]">
      <seq>aggtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttggagctgtttatattgtatctcgctatttctacttcactggttattccactggcgatccccaaaatcggcttactcttgggttagtctctcgtccagttttcgttgaatgcacattttcatttagattgaatagtgctaacaaattgagtacccaaaaatgtcaaagaaggaaaacaaaaactgctctgtatgaagtagtgaactgagtcttttacttgctcttgcctaatgccctgactaagaaacattaattgaattattatgatcttgttatgatggtgggggtaaaatttatccaggtcgatgaatggaagtcaagtgtatttcatacatacatttgtcactttcatggttaatttttaactgtcacaggccattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100537" stop="99296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100237" g_stop="100160" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100072" g_stop="99596" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="555" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E212589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100237" e_stop="100160"/>
          <exon e_start="100072" e_stop="99596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTT</genome_strand>
        <mrna_strand>AGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309542" ref_strand="+" ref_description="SGN-E309542 [cTOA-3-K9]">
      <seq>agagagagagagatcttgaataggtcaatataaataaacctgacctcaacgcaaagcgaagtatcaattctcccttttctcatacttcctctcaaaacaccaaatcggaaaaaaaccatggccggagttgaattcctccccaaagaatatggatatgtaattcttgctcttgtcgtctactgtttcttcaacttctggatgtcctttcaagtcggcaaagcccgcaaacagtacaaggttccttatccaacaatgtatgctactgaagctgaaaacaagaatgctaattcctttaactgtgttcagagaggtcatcagaattcattagaaatgatgccaacatttttcatgctgatgattgttggaggaattaggcaccccttgatttgtgcatctcttgggagctgttatattggatctcgctatttctacttcactggttattccactggcgatccccnaaatcggcttactcttgggaaatacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="100931" stop="99599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100831" g_stop="100824" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100823" i_stop="100630" i_length="194">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.013" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100629" g_stop="100408" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="230" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100235" g_stop="100160" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="306" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100072" g_stop="99900" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="479" r_length="173" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E309542" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100831" e_stop="100824"/>
          <exon e_start="100629" e_stop="100408"/>
          <exon e_start="100235" e_stop="100160"/>
          <exon e_start="100072" e_stop="99900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACAAATATCATTTAATTTGTCAAAAAAAAAAAGAAATTCACACTAGACAATTCCAATTTTTTGCACTTTTTCTAGTTCTAGAAGAAAGGGTCTAAAAATTGCAGAAATTGCATCCATTATTATAATTGTGGGAACACAAATTGACAAAGTCAAAATCTCATTTGTGCAGTCTTGAGAAACAAGACACCATTACTGTAGAGAGATCTTGAATAGGTCAATATAAATAAACCTCACCTCAACGCAAAGCGAAGTATCAATTCTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTGTCTAAATCTCTGTTTATTTCTTTATTTTGCCAAATTTTACAAAACCCCTTTTGTGAATTTTGTGATTTTGAAGCTAAAGATTTGTTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTTGAAGCTAGAGATACTGATTAATGATGGAAAACTTAACAGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAGGTAAGCTATCTTCTGCATAGTTTATTGTTTGGTAATTCATGAAAAAAATGATATGAATTTGTTGTTATGTTGGTGTGTTGATTGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTT-GGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG</genome_strand>
        <mrna_strand>AGAGAGAG..................................................................................................................................................................................................AGAGATCTTGAATAGGTCAATATAAATAAACCTGACCTCAACGCAAAGCGAAGTATCAATTCTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA............................................................................................................................................................................GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG.......................................................................................AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGGAGCTG-TTATATTGGATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCNAAATCGGCTTACTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556332" ref_strand="+" ref_description="SGN-E556332 [cTSD-3-C2]">
      <seq>gacaacataggggatctggaagggccagaagagaaggagaggggacaatcaaagattcaaaggttcatatcgtccttttgaccataatacagttgaaaaagcacacgttatatcattggaatgatgtgtaaactctggctattttaaaagtattaagatgatgtcctcagttagtcatgtcactttattctttgatgtaatgtgtaagagcatagctaccacctgttattgagggttgacagttttgactgaagatctgttagtactgaatgcgattcagtgtaatttgtaacacttcaattagtagttttacccagtgtaagttcagtgctttgtggagcatgttatgtgagctttcaccatcccaaacctggcactttggatggttattctattcagtattctctttagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="111646" stop="81082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111346" g_stop="110931" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110930" i_stop="110824" i_length="107">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.592" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110823" g_stop="110788" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="452" r_length="36" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E556332" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111346" e_stop="110931"/>
          <exon e_start="110823" e_stop="110788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAGAAAATGCTTTCAGTAATTAGCTTATTGGTGAATGTCTAAATGACTTGCAAAATTTTCATTTCCATCATGAAGTTTGTTGCTAATTTTGCTATGTACCATTCATGTGAACCAGAAAGTTAGCAATTGAAAAATGCAGACGTGAAAGAAG</genome_strand>
        <mrna_strand>GACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAGAAAAA...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393498" ref_strand="+" ref_description="SGN-E393498 [TUS-38-O6](-)">
      <seq>tatacccttcagttgatagctgtttatttgggtcatttttggacatttgaacatccttgaatcagagcaaggattgaccttttggtaaagcaacaaaaggtgactaagcaagatgtaaaagatatactccaggaatatcaagaaaacataggggatttggaagggccagaagagaaggagaggggacaatcaaagattcaaaggttcatattgtccttttgaccataatacagttgaaaaagcacacgttatatcattggaatgatgtgtaaactttgggtattttaaaagtattaagatgatgtcctcagttagtcatgtcactttattttttgatgtaatgtgtaagagcataggtaccacctgttattgagggttgacagttttgactgaagatttgttagtactgaatgcgattcagtgtaatttgtaacacttcaaggggtagttttacccagtgtaagttcagtgctttgggagaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="112312" stop="97388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112250" g_stop="112239" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112238" i_stop="112129" i_length="110">
            <donor d_prob="0.887" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112128" g_stop="112091" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="50" r_length="38" r_score="0.868"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112090" i_stop="112008" i_length="83">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112007" g_stop="111926" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="132" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111925" i_stop="111356" i_length="570">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111355" g_stop="111007" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="480" r_length="348" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111006" i_stop="110824" i_length="183">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.592" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110823" g_stop="110803" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="501" r_length="21" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E393498" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112250" e_stop="112239"/>
          <exon e_start="112128" e_stop="112091"/>
          <exon e_start="112007" e_stop="111926"/>
          <exon e_start="111355" e_stop="111007"/>
          <exon e_start="110823" e_stop="110803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCCTTCAGGTCAAAGATCTGTTGCATTTTAATTTTGTACTTATCTCTTGTACGGGCACATTACCACTTCAGATCTCTGGCATTCTTATTGTAGTTTCTTTTTCTCCCTGATCCTGCAGTTGATAGCTGTTATTCTGGGTCATCTTTGGACATCTGAGTAAGTTCTGAAAACCGGACATACTTTTCTCTTCAGGTTGGATATATCTAGTTCCTCCTGCTTAATTGTTCTTTTTAATGCAGACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAGGTGTCTGCTCATGACTTCCTTTTTTTCTCTAGCAATACACTCTTCTTGATTTTCTTGTGTTTGCTTTCGAGTTGGGTACATTATTATACAACAAATTTTTCTGGATTCTTCTACTTAATCCAAAAAAAAGAGTGAAAATTTTTGGATACATTTGGAGACAAGGTTAACTTGCAAGAAACAATAGCTTTAGGACTTGTAGCAAATGAGAGCAAAATTCAGCTTTTGCAACATGTTATTTGCATTGACCTTTGTATCTTTCACTTTGGATTTAGTTCAACGAATGTAAATTGTTTCTTGTCATGCTTGAATTATTGGAATATAACTTCGGTGTTCTGGCGTGGTAATATCTGAAGATAGATCTAGAAGCATTAACTCCTTGAGGACTTCCCTTGTCCATCTTCATGAATTGCCTGTGTTAATCTTTAATGAAATTCATACAAGTTTTATGTGAAGCTGTTTTCCTTCCTATTATATGGTTCATTTTTTTGTCAGTAGGCCTAGTTTTTCCTTTAATCTGAAGAATACTAGATAAAGTCTGTTATGTTATTGAAGTTTATACTTGCACCACAGGAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAGAAAATGCTTTCAGTAATTAGCTTATTGGTGAATGTCTAAATGACTTGCAAAATTTTCATTTCCATCATGAAGTTTGTTGCTAATTTTGCTATGTACCATTCATGTGAACCAGAAAGTTAGCAATTGAAAAATG</genome_strand>
        <mrna_strand>TATACCCTTCAG..............................................................................................................TTGATAGCTGTTTATTTGGGTCATTTTTGGACATTTGA...................................................................................ACATCCTTGAATCAGAGCAAGGATTGACCTTTTGGTAAAGCAACAAAAGGTGACTAAGCAAGATGTAAAAGATATACTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCAAGAAAACATAGGGGATTTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATTGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTTTGGGTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTTTTTGATGTAATGTGTAAGAGCATAGGTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATTTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAAGGGGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTG-GGAG.......................................................................................................................................................................................AAAGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320946" ref_strand="-" ref_description="SGN-E320946 [cTOB-13-G2]">
      <seq>agctgttattntgggtcatctttggacatctgaacatcctcgaatcagagcaaggattgaccttttgctaaagcaacaaaagctgactaagcaagatgtaaaagatatactccaggaatatcatgacaacataggggatctggaagggccagaagagaaggagaggggacaatcaaagattcaaaggttcatatcgtccttttgaccataatacagttgaaaaagcacacgttatatcattggaatgatgtgtaaactctggctattttaaaagtattaagatgatgtcctcagttagtcatgtcactttattctttgatgtaatgtgtaagagcatagctaccacctgttattgagggttgacagttttgactgaagatctgttagtactgaatgcgattcagtgtaatttgtaacacttcaattagtagttttacccagtgtaagttcagtgctttgtggagcatgttatgtgagctttcaccatcccaaacctggcactttggatggttattctattcagtattctctttagaaaatgctttcagtaattagcttattggtgaatgtctaaatgacttgcaaaattttcatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="112423" stop="110572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112123" g_stop="112091" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112090" i_stop="112008" i_length="83">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112007" g_stop="111926" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="115" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111925" i_stop="111356" i_length="570">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111355" g_stop="110872" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="599" r_length="484" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E320946" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320946" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112123" e_stop="112091"/>
          <exon e_start="112007" e_stop="111926"/>
          <exon e_start="111355" e_stop="110872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTTATTCTGGGTCATCTTTGGACATCTGAGTAAGTTCTGAAAACCGGACATACTTTTCTCTTCAGGTTGGATATATCTAGTTCCTCCTGCTTAATTGTTCTTTTTAATGCAGACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAGGTGTCTGCTCATGACTTCCTTTTTTTCTCTAGCAATACACTCTTCTTGATTTTCTTGTGTTTGCTTTCGAGTTGGGTACATTATTATACAACAAATTTTTCTGGATTCTTCTACTTAATCCAAAAAAAAGAGTGAAAATTTTTGGATACATTTGGAGACAAGGTTAACTTGCAAGAAACAATAGCTTTAGGACTTGTAGCAAATGAGAGCAAAATTCAGCTTTTGCAACATGTTATTTGCATTGACCTTTGTATCTTTCACTTTGGATTTAGTTCAACGAATGTAAATTGTTTCTTGTCATGCTTGAATTATTGGAATATAACTTCGGTGTTCTGGCGTGGTAATATCTGAAGATAGATCTAGAAGCATTAACTCCTTGAGGACTTCCCTTGTCCATCTTCATGAATTGCCTGTGTTAATCTTTAATGAAATTCATACAAGTTTTATGTGAAGCTGTTTTCCTTCCTATTATATGGTTCATTTTTTTGTCAGTAGGCCTAGTTTTTCCTTTAATCTGAAGAATACTAGATAAAGTCTGTTATGTTATTGAAGTTTATACTTGCACCACAGGAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAGAAAATGCTTTCAGTAATTAGCTTATTGGTGAATGTCTAAATGACTTGCAAAATTTTCATTTCCA</genome_strand>
        <mrna_strand>AGCTGTTATTNTGGGTCATCTTTGGACATCTGA...................................................................................ACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAGAAAATGCTTTCAGTAATTAGCTTATTGGTGAATGTCTAAATGACTTGCAAAATTTTCATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747308" ref_strand="+" ref_description="SGN-E747308 [GI|47104654]">
      <seq>tgatttgtgtgtgagaagctcttctgctgctactgggggagctaagggttttggccagaagctatggaaagcagcaaaacgcaagcgaaactctgccgagtacgaagaagatgagtacgacacattcaaaccaccgccgccgccgtcctcagccgccgcaaacggagggatcgacctttcactgctcgaagccttagaaaaatctcaacaaaaccctgtggaagttctcgatatcaaaacagtgaaaaaactcgtccttgcattcgaacgccgtcttaaggagaacattgctgcacgtctcaagtacccggaccaaccagaaaagttcgcggattccgaagtcgagctccatgaagaaatcgaaaagctcaaaatactcgccggaggccccgaattttacccggaactcgtgaatctcgggaccattgcgtctatcaccagcctcctcaatcacgaaaacactgacatcgctattgacgttgtcggcttattacaagacctgaccgacgaggatgttctcgaggacaacgacgagccggcgcaaattttagttgattcattggttgagaacaatgcgttagaattgctcgttcagcttctaggtaaaatgtctgactccgatccggacgagtccgctgccatatatagtatactcgcgactgttgagaattttattgaagtgaaaccctcggtggcggaacttgtatgtgaaaggactaagttaatgaagtggttgctgacaagaataaaggtaagagaatttgatggaaacaagcagtatgcatcggagattttggctattttgctgcagagcagcacggccaatcagaagagattagggcaattgaacggtgtggacgcattgttacaagctgtagcaatgtataaatcgaaggaccctaagactccagatgaggaagagatggttgagaacttgtttgacgccttgtgttgtttgttaatgcctttggagaataaagagaagtttgtgaaatctgaaggtgtggaattgatgatcattattatgaatcagaagaaaatgtgctatggatcagctataagggcgttggattttgcaatgactaattatcctccagcatgtgagaggtttgtggatgtaatggggttaaagactgcatttcctgcttttatgggtaagctgcctctgagcaaaaagaacaagaaacgctacaaagaagaattggaagagcgtcttgtatcacttgtggcttccttatttggaggaatcttaagaggttctagaagggatagattgttaagtaagttcgtggagaatgagtgcgaaaaaattgacaggcttatggagctctacatgagatattccgatagagtaaaacttgagtctgaacggtttgaccagcttgaacttgatgatttggagatggatgaagacgagaaatacaatagaaagttagaagctggtctttatacccttcagttgatagctgttattctgggtcatctttggacatctgaacatcctcgaatcagagcaaggattgaccttttgctaaagcaacaaaagctgactaagcaagatgtaaaagatatactccaggaatatcatgacaacataggggatctggaagggccagaagagaaggagaggggacaatcaaagattcaaaggttcatatcgtccttttgaccataatacagttgaaaaagcacacgttatatcattggaatgatgtgtaaactctggctattttaaaagtattaagatgatgtcctcagttagtcatgtcactttattctttgatgtaatgtgtaagagcatagctaccacctgttattgagggttgacagttttgactgaagatctgttagtactgaatgcgattcagtgtaatttgtaacacttcaattagtagttttacccagtgtaagttcagtgctttgtggagcatgttatgtgagctttcaccatcccaaacctggcactttggatggttattctattcagtattctctttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="115160" stop="81082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114860" g_stop="113703" g_length="1158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1159" r_length="1159" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113702" i_stop="112973" i_length="730">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112972" g_stop="112891" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1160" r_stop="1241" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112890" i_stop="112692" i_length="199">
            <donor d_prob="0.061" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112691" g_stop="112595" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1242" r_stop="1338" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112594" i_stop="112446" i_length="149">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112445" g_stop="112382" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1339" r_stop="1402" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112381" i_stop="112296" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112295" g_stop="112239" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1403" r_stop="1459" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112238" i_stop="112129" i_length="110">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112128" g_stop="112091" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1460" r_stop="1497" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112090" i_stop="112008" i_length="83">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112007" g_stop="111926" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1498" r_stop="1579" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111925" i_stop="111356" i_length="570">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111355" g_stop="110919" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1580" r_stop="2016" r_length="437" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E747308" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>2015</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114860" e_stop="113703"/>
          <exon e_start="112972" e_stop="112891"/>
          <exon e_start="112691" e_stop="112595"/>
          <exon e_start="112445" e_stop="112382"/>
          <exon e_start="112295" e_stop="112239"/>
          <exon e_start="112128" e_stop="112091"/>
          <exon e_start="112007" e_stop="111926"/>
          <exon e_start="111355" e_stop="110919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGTGTGTGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAA-GCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAGGCAAGTCAAGTTCCCTTTTACTTTAATTTTTGTTACATTTTACATTGATAGAATGATATAGTGAATTCATGTAGTCGTCAGCAATTGATTTTGACTTATGGCTGAGACATAGTTCATTTGTTGACCAGTGTGATAATTTTCTTAAGTTGAATGGATATAGAGGACTCATACAGTAGACCACAGCTGGTTTATGATTGAGATATGGTTGATTGTGTTTTGATTGATTGCTAATTTCTAAAAATTTCTGAGCATAACGGATATGAATGATTCATACAGTGGATTCCAGTTAATTTGGAACTGAAATATAGTTGTTTGATTGACTAAGTTGTTAATTTTTCAAAGATTGTCTCATAAACAACTCTTGCGGTTTAAATTTGTTGATGAATGGATTAGGATGTCAATTTTTCTTTTTCACAGATACGTTGTTAAAATGTTCGATGTCTAGATAAGGATTATATCCCCCATCAGGTTGTTACTTCACTAATAACTTGGCTATTTGTTACATGACAACAACTCTAGTATCAATTTTATTGTTGACATAGCAGTTTCTTAATGAGATATAGTAGTTAAAAAACATAACCATATCACAAGTTCTCCCCAAATGGATGAGTTTCCATTTTTTATTTCAAATTTTCAATGAGCTCTTTAGGATGATTTTGGTGTTTTTTTTAAATAATCTCTTCTATTATTGACTCATATAACTTATTATGCTTAAATGTTTTATCATCAGCTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTGGTAAGGAGGCTAATAACTGAGAACAATCTATCTGTGAAGACACAAGTATTTTGCTGTTATTAGGGGGTGGGGGGAAGAAGAAAAAAAGTTGCCTTATATTTGTATGTGACTGCATTTTTATATAAGATAGATAATTTTATTTATAATGGGAAAACCTCCCATATACCTTGGATGTGACTGCTTTAGTTTGCTGTTACAGGAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATTGACAGGCTTATGGAGCTCTACATGAGGTGATTGTTCATGCAACATATATCTAAGTACCTGCTTCATTTGCTTCCACTGTTTGGAAAAAAAAAAAAGAATGGTTCCCTTGAGGCTGATTGTACTATTTTGTTACATTGTGCTTGTTTTAAATTTTTAATCCTTTGGGCTGTTGCAGATATTCCGATAGAGTAAAACTTGAGTCTGAACGGTTTGACCAGCTTGAACTTGATGATTTGGAGGTCTGTTTACTTTTTAGACTTTGCTTATTATGTCTTTCACTAAAGCTTTTAATTTTATATTGCCATAATGGTTAACATGTTTGTAGATGGATGAAGACGAGAAATACAATAGAAAGTTAGAAGCTGGTCTTTATACCCTTCAGGTCAAAGATCTGTTGCATTTTAATTTTGTACTTATCTCTTGTACGGGCACATTACCACTTCAGATCTCTGGCATTCTTATTGTAGTTTCTTTTTCTCCCTGATCCTGCAGTTGATAGCTGTTATTCTGGGTCATCTTTGGACATCTGAGTAAGTTCTGAAAACCGGACATACTTTTCTCTTCAGGTTGGATATATCTAGTTCCTCCTGCTTAATTGTTCTTTTTAATGCAGACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAGGTGTCTGCTCATGACTTCCTTTTTTTCTCTAGCAATACACTCTTCTTGATTTTCTTGTGTTTGCTTTCGAGTTGGGTACATTATTATACAACAAATTTTTCTGGATTCTTCTACTTAATCCAAAAAAAAGAGTGAAAATTTTTGGATACATTTGGAGACAAGGTTAACTTGCAAGAAACAATAGCTTTAGGACTTGTAGCAAATGAGAGCAAAATTCAGCTTTTGCAACATGTTATTTGCATTGACCTTTGTATCTTTCACTTTGGATTTAGTTCAACGAATGTAAATTGTTTCTTGTCATGCTTGAATTATTGGAATATAACTTCGGTGTTCTGGCGTGGTAATATCTGAAGATAGATCTAGAAGCATTAACTCCTTGAGGACTTCCCTTGTCCATCTTCATGAATTGCCTGTGTTAATCTTTAATGAAATTCATACAAGTTTTATGTGAAGCTGTTTTCCTTCCTATTATATGGTTCATTTTTTTGTCAGTAGGCCTAGTTTTTCCTTTAATCTGAAGAATACTAGATAAAGTCTGTTATGTTATTGAAGTTTATACTTGCACCACAGGAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAGAAAATGCTTTCAGTAAT</genome_strand>
        <mrna_strand>TGATTTGTGTGTGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTG.......................................................................................................................................................................................................GAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATTGACAGGCTTATGGAGCTCTACATGAG.....................................................................................................................................................ATATTCCGATAGAGTAAAACTTGAGTCTGAACGGTTTGACCAGCTTGAACTTGATGATTTGGAG......................................................................................ATGGATGAAGACGAGAAATACAATAGAAAGTTAGAAGCTGGTCTTTATACCCTTCAG..............................................................................................................TTGATAGCTGTTATTCTGGGTCATCTTTGGACATCTGA...................................................................................ACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704199" ref_strand="+" ref_description="SGN-E704199 [FA23CE05]">
      <seq>gttgtttgttaatgcctttggagaataaagagaagtttgtgaaatctgaaggtgtggaattgatgatcattattatgaatcagaagaaaatgtgctatggatcagctataagggcgttggattttgcaatgactaattatcctccagcatgtgagaggtttgtggatgtaatggggttaaagactgcatttcctgcttttatgggtaagctgcctctgagcaaaaagaacaagaaacgctacaaagaagaattggaagagcgtcttgtatcacttgtggcttccttatttggaggaatcttaagaggttctagaagggatagattgttaagtaagttcgtggagaatgagtgcgaaaaaattgacaggcttatggagctctacatgagatattccgatagagtaaaacttgagtctgaacggtttgaccagcttgaacttgatgatttggagatggatgaagacgagaaatacaatagaaagttagaagctggtctttatacccttcagttgatagctgttattctgggtcatctttggacatctgaacatcctcgaatcagagcaaggattgaccttttgctaaagcaacaaaagctgactaagcaagatgtaaaagatatactccaggaatatcatgacaacataggggatctggaagggccagaagagaaggagaggggacaatcaaagattcaaaggttcatatcgtccttttgaccataatacagttgaaaaagcacacgttatatcattggaatgatgtgtaaactctggctattttaaaagtattaagatgatgtcctcagttagtcatgtcactttattctttgatgtaatgtgtaagagcatagctaccacctgttatttgagggtgacagttttgactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="114211" stop="110795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113911" g_stop="113703" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113702" i_stop="112973" i_length="730">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112972" g_stop="112891" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="291" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112890" i_stop="112692" i_length="199">
            <donor d_prob="0.061" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112691" g_stop="112595" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="388" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112594" i_stop="112446" i_length="149">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112445" g_stop="112382" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="452" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112381" i_stop="112296" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112295" g_stop="112239" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="509" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112238" i_stop="112129" i_length="110">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112128" g_stop="112091" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="547" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112090" i_stop="112008" i_length="83">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112007" g_stop="111926" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="629" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111925" i_stop="111356" i_length="570">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111355" g_stop="111095" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="890" r_length="261" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E704199" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113911" e_stop="113703"/>
          <exon e_start="112972" e_stop="112891"/>
          <exon e_start="112691" e_stop="112595"/>
          <exon e_start="112445" e_stop="112382"/>
          <exon e_start="112295" e_stop="112239"/>
          <exon e_start="112128" e_stop="112091"/>
          <exon e_start="112007" e_stop="111926"/>
          <exon e_start="111355" e_stop="111095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAGGCAAGTCAAGTTCCCTTTTACTTTAATTTTTGTTACATTTTACATTGATAGAATGATATAGTGAATTCATGTAGTCGTCAGCAATTGATTTTGACTTATGGCTGAGACATAGTTCATTTGTTGACCAGTGTGATAATTTTCTTAAGTTGAATGGATATAGAGGACTCATACAGTAGACCACAGCTGGTTTATGATTGAGATATGGTTGATTGTGTTTTGATTGATTGCTAATTTCTAAAAATTTCTGAGCATAACGGATATGAATGATTCATACAGTGGATTCCAGTTAATTTGGAACTGAAATATAGTTGTTTGATTGACTAAGTTGTTAATTTTTCAAAGATTGTCTCATAAACAACTCTTGCGGTTTAAATTTGTTGATGAATGGATTAGGATGTCAATTTTTCTTTTTCACAGATACGTTGTTAAAATGTTCGATGTCTAGATAAGGATTATATCCCCCATCAGGTTGTTACTTCACTAATAACTTGGCTATTTGTTACATGACAACAACTCTAGTATCAATTTTATTGTTGACATAGCAGTTTCTTAATGAGATATAGTAGTTAAAAAACATAACCATATCACAAGTTCTCCCCAAATGGATGAGTTTCCATTTTTTATTTCAAATTTTCAATGAGCTCTTTAGGATGATTTTGGTGTTTTTTTTAAATAATCTCTTCTATTATTGACTCATATAACTTATTATGCTTAAATGTTTTATCATCAGCTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTGGTAAGGAGGCTAATAACTGAGAACAATCTATCTGTGAAGACACAAGTATTTTGCTGTTATTAGGGGGTGGGGGGAAGAAGAAAAAAAGTTGCCTTATATTTGTATGTGACTGCATTTTTATATAAGATAGATAATTTTATTTATAATGGGAAAACCTCCCATATACCTTGGATGTGACTGCTTTAGTTTGCTGTTACAGGAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATTGACAGGCTTATGGAGCTCTACATGAGGTGATTGTTCATGCAACATATATCTAAGTACCTGCTTCATTTGCTTCCACTGTTTGGAAAAAAAAAAAAGAATGGTTCCCTTGAGGCTGATTGTACTATTTTGTTACATTGTGCTTGTTTTAAATTTTTAATCCTTTGGGCTGTTGCAGATATTCCGATAGAGTAAAACTTGAGTCTGAACGGTTTGACCAGCTTGAACTTGATGATTTGGAGGTCTGTTTACTTTTTAGACTTTGCTTATTATGTCTTTCACTAAAGCTTTTAATTTTATATTGCCATAATGGTTAACATGTTTGTAGATGGATGAAGACGAGAAATACAATAGAAAGTTAGAAGCTGGTCTTTATACCCTTCAGGTCAAAGATCTGTTGCATTTTAATTTTGTACTTATCTCTTGTACGGGCACATTACCACTTCAGATCTCTGGCATTCTTATTGTAGTTTCTTTTTCTCCCTGATCCTGCAGTTGATAGCTGTTATTCTGGGTCATCTTTGGACATCTGAGTAAGTTCTGAAAACCGGACATACTTTTCTCTTCAGGTTGGATATATCTAGTTCCTCCTGCTTAATTGTTCTTTTTAATGCAGACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAGGTGTCTGCTCATGACTTCCTTTTTTTCTCTAGCAATACACTCTTCTTGATTTTCTTGTGTTTGCTTTCGAGTTGGGTACATTATTATACAACAAATTTTTCTGGATTCTTCTACTTAATCCAAAAAAAAGAGTGAAAATTTTTGGATACATTTGGAGACAAGGTTAACTTGCAAGAAACAATAGCTTTAGGACTTGTAGCAAATGAGAGCAAAATTCAGCTTTTGCAACATGTTATTTGCATTGACCTTTGTATCTTTCACTTTGGATTTAGTTCAACGAATGTAAATTGTTTCTTGTCATGCTTGAATTATTGGAATATAACTTCGGTGTTCTGGCGTGGTAATATCTGAAGATAGATCTAGAAGCATTAACTCCTTGAGGACTTCCCTTGTCCATCTTCATGAATTGCCTGTGTTAATCTTTAATGAAATTCATACAAGTTTTATGTGAAGCTGTTTTCCTTCCTATTATATGGTTCATTTTTTTGTCAGTAGGCCTAGTTTTTCCTTTAATCTGAAGAATACTAGATAAAGTCTGTTATGTTATTGAAGTTTATACTTGCACCACAGGAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGA</genome_strand>
        <mrna_strand>GTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTG.......................................................................................................................................................................................................GAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATTGACAGGCTTATGGAGCTCTACATGAG.....................................................................................................................................................ATATTCCGATAGAGTAAAACTTGAGTCTGAACGGTTTGACCAGCTTGAACTTGATGATTTGGAG......................................................................................ATGGATGAAGACGAGAAATACAATAGAAAGTTAGAAGCTGGTCTTTATACCCTTCAG..............................................................................................................TTGATAGCTGTTATTCTGGGTCATCTTTGGACATCTGA...................................................................................ACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTTGAGGGTGACAGTTTTGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708329" ref_strand="+" ref_description="SGN-E708329 [FA35BH05]">
      <seq>cgtctatcaccagcctcctcaatcacgaaaacactgacatcgctattgacgttgtcggcttattacaagacctgaccgacgaggatgttctcgaggacaacgacgagccggcgcaaattttagttgattcattggttgagaacaatgcgttagaattgctcgttcagcttctaggtaaaatgtctgactccgatccggacgagtccgctgccatatatagtatactcgcgactgttgagaattttattgaagtgaaaccctcggtggcggaacttgtatgtgaaaggactaagttaatgaagtggttgctgacaagaataaaggtaagagaatttgatggaaacaagcagtatgcatcggagattttggctattttgctgcagagcagcacggccaatcagaagagattagggcaattgaacggtgtggacgcattgttacaagctgtagcaatgtataaatcgaaggaccctaagactccagatgaggaagagatggttgagaacttgtttgacgccttgtgttgtttgttaatgcctttggagaataaagagaagtttgtgaaatctgaaggtgtggaattgatgatcattattatgaatcagaagaaaatgtgctatggatcagctataagggcgttggattttgcaatgactaattatcctccagcatgtgagaggtttgtggatgtaatggggttaaagactgcatttcctgcttttatgggtaagctgcctctgagcaaaaagaacaagaaacgctacaaagaagaattggaagagcgtcttgtatcacttgtggcttccttatttggaggaatcttaagaggttctagaagggatagattgttaagtaagttcgtggagaatgagtgcgaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="114733" stop="112322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114433" g_stop="113703" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113702" i_stop="112973" i_length="730">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112972" g_stop="112891" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="813" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112890" i_stop="112692" i_length="199">
            <donor d_prob="0.061" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112691" g_stop="112621" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="884" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E708329" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114433" e_stop="113703"/>
          <exon e_start="112972" e_stop="112891"/>
          <exon e_start="112691" e_stop="112621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAGGCAAGTCAAGTTCCCTTTTACTTTAATTTTTGTTACATTTTACATTGATAGAATGATATAGTGAATTCATGTAGTCGTCAGCAATTGATTTTGACTTATGGCTGAGACATAGTTCATTTGTTGACCAGTGTGATAATTTTCTTAAGTTGAATGGATATAGAGGACTCATACAGTAGACCACAGCTGGTTTATGATTGAGATATGGTTGATTGTGTTTTGATTGATTGCTAATTTCTAAAAATTTCTGAGCATAACGGATATGAATGATTCATACAGTGGATTCCAGTTAATTTGGAACTGAAATATAGTTGTTTGATTGACTAAGTTGTTAATTTTTCAAAGATTGTCTCATAAACAACTCTTGCGGTTTAAATTTGTTGATGAATGGATTAGGATGTCAATTTTTCTTTTTCACAGATACGTTGTTAAAATGTTCGATGTCTAGATAAGGATTATATCCCCCATCAGGTTGTTACTTCACTAATAACTTGGCTATTTGTTACATGACAACAACTCTAGTATCAATTTTATTGTTGACATAGCAGTTTCTTAATGAGATATAGTAGTTAAAAAACATAACCATATCACAAGTTCTCCCCAAATGGATGAGTTTCCATTTTTTATTTCAAATTTTCAATGAGCTCTTTAGGATGATTTTGGTGTTTTTTTTAAATAATCTCTTCTATTATTGACTCATATAACTTATTATGCTTAAATGTTTTATCATCAGCTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTGGTAAGGAGGCTAATAACTGAGAACAATCTATCTGTGAAGACACAAGTATTTTGCTGTTATTAGGGGGTGGGGGGAAGAAGAAAAAAAGTTGCCTTATATTTGTATGTGACTGCATTTTTATATAAGATAGATAATTTTATTTATAATGGGAAAACCTCCCATATACCTTGGATGTGACTGCTTTAGTTTGCTGTTACAGGAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATT</genome_strand>
        <mrna_strand>CGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTG.......................................................................................................................................................................................................GAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272779" ref_strand="+" ref_description="SGN-E272779 [cLEM-21-F22]">
      <seq>ccatatatagtatactcgcgactgttgagaattttattgaagtgaaaccctcggtggcggaacttgtatgtgaaaggactaagttaatgaagtggttgctgacaagaataaaggtaagagaatttgatggaaacaagcagtatgcatcggagattttggctattttgctgcagagcagcacggccaatcagaagagattagggcaattgaacggtgtggacgcattgttacaagctgtagcaatgtataaatcgaaggaccctaagactccagatgaggaagagatggttgagaacttgtttgacgccttgtgttgtttgttaatgcctttggagaataaagagaagtttgtgaaatctgaaggtgtggaattgatgatcattattatgaatcagaagaaaatgtgctatggatcagctataagggcgttggattttgcaatgactaattatcctccagcatgtgagaggtttgtggatgtaatggggttaaagactgcatttcctgcttttatggctgcctctgagcaaaaagaacaagaaacgctacaaagaagaattggaagagcgtcttgtatcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="114523" stop="112606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114223" g_stop="113708" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113707" i_stop="112973" i_length="735">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112972" g_stop="112906" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="583" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E272779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114223" e_stop="113708"/>
          <exon e_start="112972" e_stop="112906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAGGCAAGTCAAGTTCCCTTTTACTTTAATTTTTGTTACATTTTACATTGATAGAATGATATAGTGAATTCATGTAGTCGTCAGCAATTGATTTTGACTTATGGCTGAGACATAGTTCATTTGTTGACCAGTGTGATAATTTTCTTAAGTTGAATGGATATAGAGGACTCATACAGTAGACCACAGCTGGTTTATGATTGAGATATGGTTGATTGTGTTTTGATTGATTGCTAATTTCTAAAAATTTCTGAGCATAACGGATATGAATGATTCATACAGTGGATTCCAGTTAATTTGGAACTGAAATATAGTTGTTTGATTGACTAAGTTGTTAATTTTTCAAAGATTGTCTCATAAACAACTCTTGCGGTTTAAATTTGTTGATGAATGGATTAGGATGTCAATTTTTCTTTTTCACAGATACGTTGTTAAAATGTTCGATGTCTAGATAAGGATTATATCCCCCATCAGGTTGTTACTTCACTAATAACTTGGCTATTTGTTACATGACAACAACTCTAGTATCAATTTTATTGTTGACATAGCAGTTTCTTAATGAGATATAGTAGTTAAAAAACATAACCATATCACAAGTTCTCCCCAAATGGATGAGTTTCCATTTTTTATTTCAAATTTTCAATGAGCTCTTTAGGATGATTTTGGTGTTTTTTTTAAATAATCTCTTCTATTATTGACTCATATAACTTATTATGCTTAAATGTTTTATCATCAGCTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTG</genome_strand>
        <mrna_strand>CCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312497" ref_strand="+" ref_description="SGN-E312497 [cLEZ-20-J1]">
      <seq>ctcgtgccgaattcgcacgaggaattttaggtgattcattggttgagaacaatgcgttagaattgctcgttcagcttctaggtaaaatgtctgactccgatccggacgagtccgctgccatatatagtatactcgcgactgttgagaattttattgaagtgaaaccctcggtggcggaacttgtatgtgaaaggactaagttaatgaagtggttgctgacaagaataaaggtaagagaatttgatggaaacaagcagtatgcatcggagattttggctattttgctgcagagcagcacggccaatcagaagagattagggcaattgaacggtgtggacgcattgttacaagctgtagcaatgtataaatcgaaggaccctaagactccagatgaggaagagatggttgagaacttgtttgacgccttgtgttgtttgttaatgcctttggagaataaagagaagtttgtgaaatctgaaggtgtggaattgatgatcattattatgaatcagaagaaaatgtgctatggatcagctataagggcgttggattttgcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="114618" stop="113479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114318" g_stop="113779" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="562" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E312497" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114318" e_stop="113779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGAC</genome_strand>
        <mrna_strand>AATTTTAGGTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209895" ref_strand="+" ref_description="SGN-E209895 [cLEC-52-D17]">
      <seq>cggaggccccgaattttacccggaactcgtgaatctcgggaccattgcgtctatcaccagcctcctcaatcacgaaaacactgacatcgctattgacgttgtcggcttattacaagacctgaccgacgaggatgttctcgaggacaacgacgagccggcgcaaattttagttgattcattggttgagaacaatgcgttagaattgctcgttcagcttctaggtaaaatgtctgactccgatccggacgagtccgctgccatatatagtatactcgcgactgttgagaattttattgaagtgaaaccctcggtggcggaacttgtatgtgaaaggactaagttaatgaagtggttgctgacaagaataaaggtaagagaatttgatggaaacaagcagtatgcatcggagattttggctattttgctgcagagcagcacggccaatcagaagagattagggcaattgaacggtgtggacgcattgttacaagctgtagcaatgtataaatcgaaagaccctaaaactccagatgaggaagagatggttgagaacttgtttgacgccttgggttgtttgttaatgcctttggagaataaagagaagtttgtgaaatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="114780" stop="113562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114480" g_stop="113862" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E209895" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114480" e_stop="113862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAA</genome_strand>
        <mrna_strand>CGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAAGACCCTAAAACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGGGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202111" ref_strand="+" ref_description="SGN-E202111 [cLEC-7-K9]">
      <seq>cggaggccccgaattttacccggaactcgtgaatctcgggaccattgcgtctatcaccagcctcctcaatcacgaaaacactgacatcgctattgacgttgtcggcttattacaagacctgaccgacgaggatgttctcgaggacaacgacgagccggcgcaaattttagttgattcattggttgagaacaatgcgttagaattgctcgttcagcttctaggtaaaatgtctgactccgatccggacgagtccgctgccatatatagtatactcgcgactgttgagaattttattgaagtgaaaccctcggtggcggaacttgtatgtgaaaggactaagttaatgaagtggttgctgacaagaataaaggtaagagaatttgatggaaacaagcagtatgcatcggagattttggctattttgctgcagagcagcacggccaatcagaagagattagggcaattgaacggtgtggacgcattgttacaagctgtagcaatgtataaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="114780" stop="113670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114480" g_stop="113970" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E202111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114480" e_stop="113970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCG</genome_strand>
        <mrna_strand>CGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393288" ref_strand="+" ref_description="SGN-E393288 [TUS-38-O6]">
      <seq>ccggaggccccgaattttacccggaactcgtgaatctcgggaccattgcgtctatcaccagcctcctcaatcacgaaaacactgacatcgctattgacgttgtcggcttattacaagacctgaccgacgaggatgttctcgaggacaacgacgagccggcgcaaattttagttgattcattggttgagaacaatgcgttagaattgctcgttcagcttctaggtaaaatgtctgactccgatccggacgagtccgctgccatatatagtatactcgcgactgttgagaattttattgaagtgaaaccctcggtggcggaacttgtatgtgaaaggactaagttaatgaagtggttgctgacaaaaataaaggtaagagaatttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="114781" stop="113794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114481" g_stop="114094" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E393288" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114481" e_stop="114094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGG</genome_strand>
        <mrna_strand>CCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAAAATAAAGGTAAGAGAATTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334976" ref_strand="+" ref_description="SGN-E334976 [cTOE-9-P21]">
      <seq>gagggcaaaacgcaagcgaaactctgcccgagtaccgaagaagacgagtacgacaccattcaaaccaccgccgccgcccgtcctcagccgccgcaaacggagggatcgacctttcacctgctcgaagccttagaaaaatctcaacaaaaccctgtggaagttctcgatatcaaaacagtgaaaaaactcgtccttgcattcgaacgccgtcttaaggagaacattgctgcacgtctcaagtaccccggaccaaccagaaaagttcgcggattccgaagtcgagctccatgaagaaatcgaaaagctcaaaatacctcgccggaggccccgaattttacccggaacctcgtgaatctcgggaccattgcgtctatcaccagcctcctcaatcacgaaaaccactgacatcgctattgacgttgtcggcttattacaagacctgaccgacgaggatgttctcgaggacaacgacgagccggcgcaaattttagttgattcattggttgagaacaatgcgttagaattgctcgttcagcttctaggtaaaatgtctgactccgatccgnacgagtccgctgccatatatagtatactcgcgactgttgagaatttttttgaagtgaacccctcggtggcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="115088" stop="113863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114793" g_stop="114163" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E334976" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114793" e_stop="114163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCAAAACGCAAGCGAAACTCTGC-CGAGTA-CGAAGAAGATGAGTACGACA-CATTCAAACCACCGCCGCCG-CCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCA-CTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTA-CCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATA-CTCGCCGGAGGCCCCGAATTTTACCCGGAA-CTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAA-CACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGA</genome_strand>
        <mrna_strand>GAG-GGCAAAACGCAAGCGAAACTCTGCCCGAGTACCGAAGAAGACGAGTACGACACCATTCAAACCACCGCCGCCGCCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACCTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACCTCGCCGGAGGCCCCGAATTTTACCCGGAACCTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACCACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGNACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTTTTGAAGTGAACCCCTCGGTGGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341326" ref_strand="+" ref_description="SGN-E341326 [cTOE-22-F12]">
      <seq>tgagaagctcttctgctgctactgggggagctaagggttttggccagaagctatggaagcagcaaaacgcaagcgaaactctgccgagtacgaagaagatgagtacgacacattcaaaccaccgccgccgccgtcctcagccgccgcaaacggagggatcgacctttcactgctcgaagccttagaaaaatctcaacaaaaccctgtggaagttctcgatatcaaaacagtgaaaaaactcgtccttgcattcgaacgccgtcttaaggagaacattgctgcacgtctcaagtacccggaccaaccagaaaagttcgcggattccgaagtcgagctccatgaagaaatcgaaaagctcaaaatactcgccggaggccccgaattttacccggaactcgtgaatctcgggaccattgcgtctatcaccagcctcctcaatcacgaaaacactgacatcgctattgacgttgtcggcttattacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="115149" stop="114065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114849" g_stop="114365" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E341326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114849" e_stop="114365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAG</genome_strand>
        <mrna_strand>TGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300959" ref_strand="+" ref_description="SGN-E300959 [cLEW-8-F15]">
      <seq>tgatttgtgtgtgagaagctcttctgctgctactgggggagctaagggttttggccataagctatggaagcagcaaaacgcaagcgaaactctgccgagtacgaagaagatgagtacgacacattcaaaccaccgccgccgccgtcctcagccgccgcaaacggagggatcgacctttcactgctcgaagccttagaaaaatctcaacaaaaccctgtggaagttctcgatatcaaaacagtgaaaaaactcgtccttgcattcgaacgccgtcttaaggagaacattgctgcacgtctcaagtacccggaccaaccagaaaagttcgcggattccgaagtcgagctccatgaagaaatcgaaaagctcaaaatactcgccggaggccccgaattttacccggaactcgtgaatctcgggaccattgcgtctatcaccagcctcctcaatcacgaaaacactgacatcgctattgacgttgtcggcttattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="115160" stop="114067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114860" g_stop="114367" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E300959" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114860" e_stop="114367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGTGTGTGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACA</genome_strand>
        <mrna_strand>TGATTTGTGTGTGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCATAAGCTATGGAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718314" ref_strand="+" ref_description="SGN-E718314 [FC04BC04]">
      <seq>gaccgagaacgagaaagatctagctcaattccctctgattgaaaaatggcaaatcagaaaagggttctcttactatgtgaagattacgttgaagactatgaggtgatggtaccatttacagctctactaacctatggactagccgatgatgctgtttgtcctgtaaagaaatccggtgacatttgccgcactgccttccatcagctttctggccaccaaagttattcagagtcccgcggacacaattttgctgttaatgcaaccttctatgaaatcgaggctacgaagtatgatgggttgttcatcccaagaggacgtgctccaaattatctggccttgaatgagtctgtgttggacttggagaaaagttttgccaccactaagaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcacatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcgcctggtgcccattgggaagagccaaataccctggcctcatgtaccatcgatggtagtctcatcactggatctacttactagggaaaccctgatttcattcaactctttgtttacgcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttncagctatgatggacttgtaattcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116329" stop="120461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116545" g_stop="116549" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116550" i_stop="116632" i_length="83">
            <donor d_prob="0.863" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116633" g_stop="116729" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="102" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="219" r_length="117" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="660" r_length="441" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119933" g_stop="120161" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="889" r_length="229" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E718314" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116545" e_stop="116549"/>
          <exon e_start="116633" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGTGGATTCTGTATAGCAACAGTCAGCTTCTTCGTCTTCTTCTCTTATAATATATATCAATTCCTTAATCTCTTCCACACACAGAGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCG</genome_strand>
        <mrna_strand>GACCG...................................................................................AGAACGAGAAAGATCTAGCTCAATTCCCTCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGAAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTACAGCTCTACTAACCTATGGACTAGCCGATGATGCTGTTTGTCCTGTAAAGAAATCCGGTGACATTTGCCGCACTGCCTTCCATCAGCTTTCTGGCCACCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCTATGAAATCGAGGCTACGAAGTATGATGGGTTGTTCATCCCAAGAGGACGTGCTCCAAATTATCTGGCCTTGAATGAGTCTGTGTTGGACTTGGAGAAAAGTTTTGCCACCACTAAGAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCACATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGCCTGGTGCCCATTGGGAAGAGCCAAATACCCTGGCCTCATGTACCATCGATGGTAGTCTCATCACTGGATCTACTTACTAGGGAAACCCTGATTTCATTCAACTCTTTGTTTACGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTNCAGCTATGATGGACTTGTAATTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207351" ref_strand="+" ref_description="SGN-E207351 [cLEC-36-G15]">
      <seq>ttcttcgtcttcttctcttataatatatatcaattccttaatctcttccacacacagagaaagagaaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116276" stop="118603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116576" g_stop="116729" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="271" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118303" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="618" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E207351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116576" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCGTCTTCTTCTCTTATAATATATATCAATTCCTTAATCTCTTCCACACACAGAGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTAC</genome_strand>
        <mrna_strand>TTCTTCGTCTTCTTCTCTTATAATATATATCAATTCCTTAATCTCTTCCACACACAGAGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339110" ref_strand="+" ref_description="SGN-E339110 [cTOF-6-C14]">
      <seq>tcttctcttataatatatatcaattccttaatctcttccacacacagagaaagagaaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgngaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116286" stop="118660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116586" g_stop="116729" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="261" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118360" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="665" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E339110" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116586" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTTATAATATATATCAATTCCTTAATCTCTTCCACACACAGAGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCAT</genome_strand>
        <mrna_strand>TCTTCTCTTATAATATATATCAATTCCTTAATCTCTTCCACACACAGAGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGNGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717598" ref_strand="+" ref_description="SGN-E717598 [FC02AG09]">
      <seq>gggcgattggcggccaatcggccgaattgagagaaagagaaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttctggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116331" stop="120417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116633" g_stop="116729" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="128" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="245" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="686" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120117" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="871" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E717598" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116633" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTT</genome_strand>
        <mrna_strand>AGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTCTGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723008" ref_strand="+" ref_description="SGN-E723008 [FC19AB11]">
      <seq>ggcggccaaatcggccgaattgagagaaagagaaagataaagctcaattcctgctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttctggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcatatgtggtcaaaggtcgaaagtgcacagcttatcctgctgtcaagccggagcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116331" stop="118698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116633" g_stop="116729" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="121" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="238" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="679" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E723008" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116633" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG</genome_strand>
        <mrna_strand>AGAAAGAGAAAGATAAAGCTCAATTCCTGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTCTGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCATATGTGGTCAAAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGAGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702493" ref_strand="+" ref_description="SGN-E702493 [FA18DE06]">
      <seq>gaaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttcaagctatgatggacttgtaatccccggaggccgagctccagaataccttgccctggatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116340" stop="120499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116640" g_stop="116729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="207" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="648" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120199" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="915" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E702493" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116640" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGAT</genome_strand>
        <mrna_strand>GAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATCCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710800" ref_strand="+" ref_description="SGN-E710800 [FA56DB02]">
      <seq>gaaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagctcatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116340" stop="120339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116640" g_stop="116729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="207" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="648" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120039" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="755" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E710800" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116640" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCC</genome_strand>
        <mrna_strand>GAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTCATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704396" ref_strand="+" ref_description="SGN-E704396 [FA24AG01]">
      <seq>gaaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgcccatgtgatgctgtttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116340" stop="120312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116640" g_stop="116729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="207" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="648" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120012" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="728" r_length="80" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E704396" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116640" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCC</genome_strand>
        <mrna_strand>GAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCCATGTGATGCTGTTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334696" ref_strand="+" ref_description="SGN-E334696 [cTOD-23-F14]">
      <seq>aaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaaagatcctatttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116341" stop="118692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116641" g_stop="116729" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="206" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118392" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="642" r_length="436" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E334696" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116641" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTAT</genome_strand>
        <mrna_strand>AAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAAGATCCTATTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268265" ref_strand="+" ref_description="SGN-E268265 [cLEM-3-M20]">
      <seq>aaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattaccgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116341" stop="118638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116641" g_stop="116729" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="207" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118338" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="589" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E268265" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116641" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTAC-GTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTG</genome_strand>
        <mrna_strand>AAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACCGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336062" ref_strand="+" ref_description="SGN-E336062 [cTOE-12-K13]">
      <seq>aaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116341" stop="118632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116641" g_stop="116729" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="206" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118332" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="582" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E336062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116641" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGAC</genome_strand>
        <mrna_strand>AAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301727" ref_strand="+" ref_description="SGN-E301727 [cLEX-9-L8]">
      <seq>aaagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116341" stop="118478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116641" g_stop="116729" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="206" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118178" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="428" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E301727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116641" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTC</genome_strand>
        <mrna_strand>AAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275591" ref_strand="+" ref_description="SGN-E275591 [cLEN-10-P23]">
      <seq>aagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116342" stop="118708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116642" g_stop="116729" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="205" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="646" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E275591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116642" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG</genome_strand>
        <mrna_strand>AAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275590" ref_strand="+" ref_description="SGN-E275590 [cLEN-10-P21]">
      <seq>aagatagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116342" stop="118588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116642" g_stop="116729" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="205" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118288" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="537" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E275590" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116642" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCT</genome_strand>
        <mrna_strand>AAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704166" ref_strand="+" ref_description="SGN-E704166 [FA23CB04]">
      <seq>atagagctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgcccccagaagaaagccggagagaaatgccccacggctgtgcacgacttttgaggtgaccagacttatagtgagaagccaagtcacgattttacccctgatggccattttgaaagtgtggatgtttcaagctatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116345" stop="120447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116645" g_stop="116729" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="202" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="643" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120147" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="858" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E704166" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116645" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGG</genome_strand>
        <mrna_strand>ATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCCAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTTGAGGTGACCAGACTTATAGTGAGAAGCCAAGTCACGATTTTACCCCTGATGGCCATTTTGAAAGTGTGGATGTTTCAAGCTATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708114" ref_strand="+" ref_description="SGN-E708114 [FA34DE11]">
      <seq>ctctattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttcaagctatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116351" stop="120446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116651" g_stop="116729" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="637" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120146" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="851" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E708114" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116651" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATG</genome_strand>
        <mrna_strand>CTCTATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367626" ref_strand="+" ref_description="SGN-E367626 [cLPT-14-O11]">
      <seq>ctcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctgctagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttctggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttatgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116351" stop="120251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116651" g_stop="116729" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="637" r_length="441" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="119951" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="656" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E367626" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116651" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="119951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATG</genome_strand>
        <mrna_strand>CTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTGCTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTCTGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTATGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264999" ref_strand="+" ref_description="SGN-E264999 [cLEI-10-L13]">
      <seq>tcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116352" stop="118637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116652" g_stop="116729" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="195" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118337" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="576" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E264999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116652" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTT</genome_strand>
        <mrna_strand>TCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304822" ref_strand="+" ref_description="SGN-E304822 [cLEX-10-N19]">
      <seq>tcaattcagctgattgaaaaatggaatcaaaaagggtctcttactatgtggagattacttgaaactatagtgatggaccatttaagctctactacctatggactaccgtgatgctgttgtctgaaagaaatcgtgacatttgcgactgcgtcatagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116352" stop="118546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116652" g_stop="116729" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="171" r_length="101" r_score="0.863"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="0.86"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118246" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="461" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E304822" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.052" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116652" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGA</genome_strand>
        <mrna_strand>TCAATT-CAGCTGATTGAAAAATGG--AATCA-AAAAGGG-TCTCTTACTATGTGGAGATTAC-TTGAA-ACTAT-AG..................................................................................................................................-TGATGG-ACCATTT-AAGCTCTACTA-CCTATGGACTA-CCG-TGATGCTG-TTGT-CT-GAAAGAAAT-C-GTGACATTTG-CG-ACTG-CGT-CAT-AGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338677" ref_strand="+" ref_description="SGN-E338677 [cTOE-15-J10]">
      <seq>tcaattccagctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116352" stop="118494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116652" g_stop="116729" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="195" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118194" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="433" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E338677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116652" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCA</genome_strand>
        <mrna_strand>TCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704712" ref_strand="+" ref_description="SGN-E704712 [FA25AC01]">
      <seq>gctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttcaagctatgatggacttgtaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116361" stop="120459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116661" g_stop="116729" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="186" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="627" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120159" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="854" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E704712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116661" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCC</genome_strand>
        <mrna_strand>GCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704537" ref_strand="+" ref_description="SGN-E704537 [FA24CC07]">
      <seq>gctgattgaaaaatggcaaatcagaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116361" stop="120434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116661" g_stop="116729" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="186" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="627" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120134" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="829" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E704537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116661" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTT</genome_strand>
        <mrna_strand>GCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724043" ref_strand="+" ref_description="SGN-E724043 [FC22DE11]">
      <seq>ctgattgaaaaatggcaaatcacaaaagggttctcttactatgtggagattacgttgaagactatgacgtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttctggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcttaccaggaggacgtgctccacaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggtggctgcaaatgtggtcaaaggtcgaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116362" stop="118492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116662" g_stop="116729" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="185" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118192" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="421" r_length="236" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E724043" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116662" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTG</genome_strand>
        <mrna_strand>CTGATTGAAAAATGGCAAATCACAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAC..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTCTGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCTTACCAGGAGGACGTGCTCCACAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGTGGCTGCAAATGTGGTCAAAGGTCGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311882" ref_strand="+" ref_description="SGN-E311882 [cTOA-15-N22]">
      <seq>ctgattgaaaaatggcaaatcaaaaaagggttctcttactatgtggagattacgttgaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116362" stop="118462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116662" g_stop="116729" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="185" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118162" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="391" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E311882" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116662" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGC</genome_strand>
        <mrna_strand>CTGATTGAAAAATGGCAAATCAAAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210589" ref_strand="+" ref_description="SGN-E210589 [cLEC-68-E7]">
      <seq>gaagactatgaggtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116556" stop="120312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116718" g_stop="116729" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="129" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="570" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119933" g_stop="120012" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="650" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E210589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116718" e_stop="116729"/>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTATGAGGTTGCTCTCTTTTTCTTTTCTTTTTTTTTCACATTCTTGATTTCTACTTAGTGTGTTATGAGTATATGTTAAAATGGTTAATCGGTTACTGATTTTTTTGTTTTGTTTTGTTTTGTTTGTTATTGTTCAGGTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCC</genome_strand>
        <mrna_strand>GAAGACTATGAG..................................................................................................................................GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725583" ref_strand="+" ref_description="SGN-E725583 [LA04AE09]">
      <seq>gtgatggtaccatttcaagctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcacttcgtggcagcatagttggttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116560" stop="118672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116860" g_stop="116976" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117957" g_stop="118371" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="532" r_length="415" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E725583" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116860" e_stop="116976"/>
          <exon e_start="117957" e_stop="118371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTG</genome_strand>
        <mrna_strand>GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTTCGTGGCAGCATAGTTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262779" ref_strand="+" ref_description="SGN-E262779 [cLEG-63-H6]">
      <seq>agctctactagcctatggactagccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaacactaaaaagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaagtcgaaagtgcacagcttatcctgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116577" stop="118510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116877" g_stop="116976" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117957" g_stop="118210" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="354" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E262779" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116877" e_stop="116976"/>
          <exon e_start="117957" e_stop="118210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGT</genome_strand>
        <mrna_strand>AGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAAGTCGAAAGTGCACAGCTTATCCTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375573" ref_strand="+" ref_description="SGN-E375573 [TUS-34-L16]">
      <seq>agctctactagcctatggactatccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttatggtcaccagacatattcagagtcccgcggacacaattttgctgttaatgcaaccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116577" stop="118380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116877" g_stop="116976" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117957" g_stop="118080" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="224" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E375573" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116877" e_stop="116976"/>
          <exon e_start="117957" e_stop="118080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATG</genome_strand>
        <mrna_strand>AGCTCTACTAGCCTATGGACTATCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718404" ref_strand="+" ref_description="SGN-E718404 [FC04CC05]">
      <seq>gctctactagcctatggactacccgttgatgctgtttgtcctggaaagaaatccggtgacatttgccgcactgccgtccatcagctttctggtcaccagacatattcaaagtcccgcggacacaattttgctgttaatgcacccttcgatgaaatcgaggctacaaagtatgatggcttgttcataccaggaggacgtgctccagaatatctggccatgaatgaagctgtgttggacttggtgaaaagttttgccaactctaaaaagccaattgtcactgtctgtcatggacaactgatcctggcggctgcaaatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaaaagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctaatttctatgtggggatttcatggaaaactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgcaatgttgatgctgtttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="116578" stop="120311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116878" g_stop="116976" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117957" g_stop="118397" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="541" r_length="442" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119933" g_stop="120011" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="620" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E718404" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116878" e_stop="116976"/>
          <exon e_start="117957" e_stop="118397"/>
          <exon e_start="119933" e_stop="120011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAGGTCAATTATTTTCTCTATCTTGTCTGTTAGTTTGAATCCGCATAGTTCTTCTAAGCGCTATGTTATGTAATGTGATTATTTACTAGTTTTTTGGAGTAGATTCTTGGTGAATAGCTTTGATCTGTCTGGCAACTCTGATAAAGACAAGGGTTGAATTTTGAAGTAGGTCAAAGCTAGTCTATTAATTAGAGCCTGATACATATGATTCATATAGTGGATCTCAATCAAGTCGAAAAAATGATTATAGTTTGCCATTTTGTGTATACCTAATTGACTCATGCTGGATTGCATTGGATCGTAATGTTTTCGTTCACAGTACGGATATATGCTCTTATGATTTCTGTTTGAAAATTGGATACCCATTTATTACAAAAAGTAAAAGGTTAAGGCTTTAGAGTTATTGGAGTATGATTTGAATCTGCATAATTCTTATCTATGATTATTATTTCTCAAGTAGTATTCGGGTTGACTTTTAGATGTTTAATGAGTAGAACTTACCCTTTGACTAATACTGGATTGTAGTTGAAGATTGAAACTCGATTTGTAGATGTGTTCATTTATTATGAGTTTGAATTCAAGGAAATAAAGGAGCTTTCATTGCTGATGGACGTAGAACTTATGATACTGGGATCTTCAAGTGTAGTTTCTAGCTTTCAAGAAATCGGATGTTGCATCTCTATATGCAGACCACTTAGCTCATAATAATTTACAGCTGAGGGCAAGAGACGTGGTGGATGAGTTCTTAGTCAAGGAGAGTCATCGTTGAACAATTTAGCTAGATATAGGCTGGCCAATTGGAGTTCTAGGTTTTAGACAATTACAACAATTCTTTAACCAAATTATATGTGTATACTCACTTGTACACATGGCTTTGAGCAATGCACTAATTTTTTCCTATTCATTTGTTATAGAATTTGAATTTGTGATGGTATTAATGTTTTGTGGTAGCAGAGTCTTATTTAGTTTCAAAATTGTTTCAGACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCT-ATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCC</genome_strand>
        <mrna_strand>GCTCTACTAGCCTATGGACTACCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTCTGGTCACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCAAAGTCCCGCGGACACAATTTTGCTGTTAATGCACCCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACTCTAAAAAGCCAATTGTCACTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAAATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAAAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTAATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAAACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCAATGTTGATGCTGTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254154" ref_strand="+" ref_description="SGN-E254154 [cLEG-34-C16]">
      <seq>aagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttcaagctatgatggacttgtaattcccggaggccgagctccagaataccttgccctggatgatgatgttattaagttggtccaggaatttatggagtccaaaaaaccagttgcatcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="117822" stop="120553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118122" g_stop="118397" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119933" g_stop="120253" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="597" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E254154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118122" e_stop="118397"/>
          <exon e_start="119933" e_stop="120253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATC</genome_strand>
        <mrna_strand>AAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296601" ref_strand="+" ref_description="SGN-E296601 [cLET-39-B10]">
      <seq>aagccaattgtctctgtctgtcatggacaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="117822" stop="120411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118122" g_stop="118397" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119933" g_stop="120111" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="455" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E296601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118122" e_stop="118397"/>
          <exon e_start="119933" e_stop="120111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGC</genome_strand>
        <mrna_strand>AAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290286" ref_strand="+" ref_description="SGN-E290286 [cLET-5-F18]">
      <seq>tttgtctgtcatggacaactgatcctggcggctgcagatgtggtcataggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggattacatggaagactatgaagtcaaggtaccttttcagtccctacaagctcttgaatgccatgttgatgctgattgccccaagatgaaagccttacagaaatgccccacggctgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="117834" stop="120351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118134" g_stop="118397" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119933" g_stop="120051" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="383" r_length="119" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E290286" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118134" e_stop="118397"/>
          <exon e_start="119933" e_stop="120051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCA</genome_strand>
        <mrna_strand>TTTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCATAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTACAAGCTCTTGAATGCCATGTTGATGCTGATTGCCCCAAGATGAAAGCCTTACAGAAATGCCCCACGGCTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214319" ref_strand="+" ref_description="SGN-E214319 [cLEC-77-N8]">
      <seq>acaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttcaagctatgatggacttgtaattcccggaggccgagctccagaataccttgccctggatgatgatgttattaagttggtccaggaatttatggagtccaaaaaaccagttgcatcaatctgccatgggcaacagatactatctgctgctggtgttctcaagggtaagaagtgtactgcgtaccctgctgtgaaacttaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="117848" stop="120840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118148" g_stop="118397" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119933" g_stop="120295" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="613" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120296" i_stop="120500" i_length="205">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120501" g_stop="120540" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="653" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E214319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118148" e_stop="118397"/>
          <exon e_start="119933" e_stop="120295"/>
          <exon e_start="120501" e_stop="120540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAGGTATCTTATCTCTCTTAACATCATTTAGAATGGAAGTTTAAAAAGTTAGGTGCTTACATGATGTTTGAGGAACTTTTTATACTAAGATGTTGTGATAAAATTGATCCCATGCAGTAACTAGAACATGTTATCTTCAGAAATGAGATAAAATGAAAACATGTGGTGTGTGCAAACTCTAATCCGTGTTCTCGTTAAACAATTACAGGGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACG</genome_strand>
        <mrna_strand>ACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAG.............................................................................................................................................................................................................GGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203562" ref_strand="+" ref_description="SGN-E203562 [cLEC-15-F12]">
      <seq>acaactgatcctggcggctgcagatgtggtcagaggtcgaaagtgcacagcttatcctgctgtcaagccggtgcttgttgcggctggtgcccattgggaagagccagaaaccctggcctcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="117848" stop="120357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118148" g_stop="118397" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119933" g_stop="120057" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="375" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E203562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118148" e_stop="118397"/>
          <exon e_start="119933" e_stop="120057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTT</genome_strand>
        <mrna_strand>ACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543555" ref_strand="+" ref_description="SGN-E543555 [TUS-65-G23](-)">
      <seq>aagagccagaaaccctggcntcatgtaccatcgatggtaatctcatcactggatctacttacgaaggaaaccctgatttcattcgactctttgttaaggcactcggtggcagcatagttggttctggtaaaagaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttcaagctatgatggacttgtaattcccggaggccgagctccagaataccttgccctggatgatgatgttattaagttggtccaggaatttatggagtccaaaaaaaccagttgcatcaatctgccatgggcaacagatactatctgctgctggtgttctcaagggtaagaagtgtactgcgtaccctgctgtgaaacttaacgtgatactaggaggggcgacatggctagaaccagaaccaatagaccgttgcttcacggacggacatcttgtgacgggggcagcttggccaggtcatcctgagtttatttctcagttcatggcactgcttggagtgcatgtaaaattttaggctacttgtttgtttgacatgttttgccaggtgatgagaataaattttttttaattgtaccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="117946" stop="121057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118246" g_stop="118397" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119933" g_stop="120295" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="516" r_length="364" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120296" i_stop="120500" i_length="205">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120501" g_stop="120753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="769" r_length="253" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="770" polyA_stop="789"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E543555" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118246" e_stop="118397"/>
          <exon e_start="119933" e_stop="120295"/>
          <exon e_start="120501" e_stop="120753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCC-AAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAGGTATCTTATCTCTCTTAACATCATTTAGAATGGAAGTTTAAAAAGTTAGGTGCTTACATGATGTTTGAGGAACTTTTTATACTAAGATGTTGTGATAAAATTGATCCCATGCAGTAACTAGAACATGTTATCTTCAGAAATGAGATAAAATGAAAACATGTGGTGTGTGCAAACTCTAATCCGTGTTCTCGTTAAACAATTACAGGGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGA</genome_strand>
        <mrna_strand>AAGAGCCAGAAACCCTGGCNTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAG.............................................................................................................................................................................................................GGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375572" ref_strand="+" ref_description="SGN-E375572 [TUS-34-L16](-)">
      <seq>gggtaaaaaaatcctatttctatgtggggatttcatggaagactatgaagtcaaggtaccttttcagtccctccaagctcttgaatgccatgttgaatgctgtttgccccaagaagaaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttcaagctatgatggacttgtaattcccggaggccgagctccagaataccttgccctggatgatgatgttattaagttggtccaggaatttatggagtccaaaaaaccagttgcatcaatctgccatgggcaacagatactatctgctgctggtgttctcaagggtaaaaagtgtactgcgtaccctgctgtgaaacttaacgtgatactaggaggggcgacatggctagaaccagaaccaatagaccgttgcttcacggacggacatcttgtgacgggggcagcttggccaggtcatcctgagtttatttctcagttcatggcactgcttggagtgcatgtaaaattttaggctacttgtttgtttgacatgttttgccaggtgatgagaataaattttttttaattgtaacagaataatgagtgtgtttttataatgttaaaaaatcactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="118071" stop="121093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118370" g_stop="118397" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119933" g_stop="120295" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="392" r_length="364" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120296" i_stop="120500" i_length="205">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120501" g_stop="120799" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="691" r_length="299" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E375572" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118370" e_stop="118397"/>
          <exon e_start="119933" e_stop="120295"/>
          <exon e_start="120501" e_stop="120799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAAAGAATCCTATTTCTATGTGGGGTAAGTTAATGATCATGTAGCATTATCTTTTTTAGCTTAGAGAATTTGAAATGCTGAGTTTCAAATTGCAGTTTACTAGTAAATGTTAGTATATGAACCAAATTTACAGATTATGGTATGACTTGTGACCTTTGAAACAACTTCCATCCCACTCCTAAATTTAACTAGTTCTGTTGATATGTAGGTGAAAGAAATTTCTCCTTACTGAAATTCCAATATGTGCCATAATAAGATTCTCTCTTTATGTTTATTCGCATAGTTTGTGTCATATTTTGCTCTCCACATGTTGGTGAGGCATCAGATAATCACCTGATATTGTTTGGAATGGCATGCCTGCGTACATAAGAAAGAGACTCCAGTTTGACCTGTCATCTTAAGTTTGACAGTATAGATTGATTATTATCAGCTGTAACTTAGTTTTGGTAGTGTGTGCTCCTATGTCTCAAGGAGGATTTGTTGAAGAAGATGAGATGTAGACTGTCATAGATGCTAAAGAATAAATAAGAGCTTTTCAACTTTGTTCTTTCGAAGTGCTATATTAGCAAGTGGTGCATCTCTTTGTTGTAAAAGCGAATAGTATTGTAACTTAAAAGTTCACCCAGGGAGCTTGTAGTAACTTTCATAGCACATTTTTTGGGAAAAGGTCTTTGCTGCATATGCTAATGTATTATTCTCTTTTCAGGCCATTGCAGAGCGCCTTTTACCTTTAAATGAACGTTTAACTATTAGTACTGCTTTATCATATAGGATTACCAACCTCATTCTTTTAAGGAACGTGATATCGAAATTGTCTCTTGAAGATGATATCTGGCTACTCTATCCTCCATGTTCTTTATGATCAAGGGTCGCAGTTCTTGTCATTCTCTTGGAGGATTGTTTTATTTGGATCATGAGCTGTTTATTAGCACATTTTAGTAGAGCTTCCTCCAAATAGAAAAGAAAAAGAACCCTTTCCTTACTCTTTCCCCACCTACGTGAATCTATGCAATCTACAGAAGTTATTGATGGTGGCCGACTCCTTGAGTTATTTATCTGAATTGCAAATTCCATACAGAATTAGTGAGGTTCACGGTTCACCTTGAACAGGATATACAGTTTTTAAAAAAAAGGTTTTTACAACTCATGATTTATGAATTCCCGTGTCTTACCTGTACTACTCGGCCAAACTATCTACACAATCGGATTAGATGTACTTCTTGCTTGATTTATATTTTTATTTCCCTCGAGTCACTCTTTTCCGCTTTGTTGATCATGTTATCATATTTCCTGTTACTTTATCTAATTGAAGCCATTGGTCTGGGGTCTGGGCATCGGATGTCTTGAAAGATGTTCCACTAAGTAGAAGGCTTGAAACTACCACGCTAGAGCCTTTATTTTTTCAGTATGAGTTACCTGGCTAGTATCACGGATGTGTGCAGATTTCATATTTAGAGTTCTTCTCTGCTCTGGTCTCAGACTGTTAAACTTGTATTAGATTGACATCTTATTTAGCAACTAATTTGAGCGCCCTTGTGTCTACTTTCTTTTGGGTGTAGGATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTG-ATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAGGTATCTTATCTCTCTTAACATCATTTAGAATGGAAGTTTAAAAAGTTAGGTGCTTACATGATGTTTGAGGAACTTTTTATACTAAGATGTTGTGATAAAATTGATCCCATGCAGTAACTAGAACATGTTATCTTCAGAAATGAGATAAAATGAAAACATGTGGTGTGTGCAAACTCTAATCCGTGTTCTCGTTAAACAATTACAGGGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTG</genome_strand>
        <mrna_strand>GGGTAAAAAAATCCTATTTCTATGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGAATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAG.............................................................................................................................................................................................................GGTAAAAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTAAAAAATCACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307757" ref_strand="+" ref_description="SGN-E307757 [cLEY-16-L19]">
      <seq>aaagccggagagaaatgccccacggctgtgcacgactttgaaggtgaccagacttatagtgagaagccaggtcacgattttaccctgaatgccaattttgaaagtgtggatgtttcaagctatgatggacttgtaattcccggaggccgagctccagaataccttgccctggatgatgatgttattaagttggtccaggaatttatggagtccaaaaaaccagttgcatcaatctgccatgggcaacagatactatctgctgctggtgttctcacgggtaagaagtgtactgcgtaccctgctgttaaacttaacgtgatactaggaggggcgacatggctagaaccagaaccaatagaccgttgcttcacggacggacatcttgtgacggaggcagcttggccaggtcatcctgagtttatttctcagttcatggcactgcttggagtgcatgtaaaattttaggctacttgattgcttgacatgttatgccaggtgatgagaataaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="119720" stop="121036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120020" g_stop="120295" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120296" i_stop="120500" i_length="205">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120501" g_stop="120736" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="512" r_length="236" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E307757" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120020" e_stop="120295"/>
          <exon e_start="120501" e_stop="120736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAGGTATCTTATCTCTCTTAACATCATTTAGAATGGAAGTTTAAAAAGTTAGGTGCTTACATGATGTTTGAGGAACTTTTTATACTAAGATGTTGTGATAAAATTGATCCCATGCAGTAACTAGAACATGTTATCTTCAGAAATGAGATAAAATGAAAACATGTGGTGTGTGCAAACTCTAATCCGTGTTCTCGTTAAACAATTACAGGGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTT</genome_strand>
        <mrna_strand>AAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCACG.............................................................................................................................................................................................................GGTAAGAAGTGTACTGCGTACCCTGCTGTTAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGAGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGATTGCTTGACATGTTATGCCAGGTGATGAGAATAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275648" ref_strand="+" ref_description="SGN-E275648 [cLEN-18-M7]">
      <seq>ggaggccgagtttcagaatacccttgccctggatgatgatgttattaagttggtccaggaatttatggagtccaaaaaaccagttgcatcaatctgccatgggcaacagatactatctgctgctggtgttctcaagggtaagaagtgtactgcgtaccctgctgtgaaacttaacgtgatactaggaggggcgacatggctagaaccagaaccaatagaccgttgcttcacggacggacatcttgtgacgggggcagcttggccaggtcatcctgagtttatttctcagttcatggcactgcttggagtgcatgtaaaattttaggctacttgtttgtttgacatgttttgccaggtgatgagaataaattttttttaattgtaacagaataatgagtgtgtttttataatgttcgaaaatcactaaaactactgatgtccgcataaatgtactcccttgggaattctaaatgtgacttttttacctatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="119861" stop="121156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120161" g_stop="120295" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120296" i_stop="120500" i_length="205">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120501" g_stop="120856" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="492" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="503"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E275648" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120161" e_stop="120295"/>
          <exon e_start="120501" e_stop="120856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCCGAGCTCCAGAATA-CCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAGGTATCTTATCTCTCTTAACATCATTTAGAATGGAAGTTTAAAAAGTTAGGTGCTTACATGATGTTTGAGGAACTTTTTATACTAAGATGTTGTGATAAAATTGATCCCATGCAGTAACTAGAACATGTTATCTTCAGAAATGAGATAAAATGAAAACATGTGGTGTGTGCAAACTCTAATCCGTGTTCTCGTTAAACAATTACAGGGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTGATGTCCGCATAAATGTACTCCCTTGGGAATTCTAAATGTGACTTTTTTACCTATTTA</genome_strand>
        <mrna_strand>GGAGGCCGAGTTTCAGAATACCCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAG.............................................................................................................................................................................................................GGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTGATGTCCGCATAAATGTACTCCCTTGGGAATTCTAAATGTGACTTTTTTACCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276631" ref_strand="+" ref_description="SGN-E276631 [cLEN-14-A1]">
      <seq>ggaggccgagctccagaataccttgccctggatgatgatgttattaagttggtccaggaatttatggagtccaaaaaaccagttgcatcaatctgccatgggcaacagatactatctgctgctggtgttctcaagggtaagaagtgtactgcgtaccctgctgtgaaacttaacgtgatactaggaggggcgacatggctagaaccagaaccaatataccgttgcttcacggacggacatcttgtgacgggggcagcttggccaggtcatcctgagtttatttctcagttcatggcactgcttggagtgcatgtaaaattataggctacttgtttgtttgacatgttttgccaggtgatgagaataaattttttttaattgtaacagaataatgagtgtgtttttataatgttcgaaaatcactaaaactactgatgtccgcataaatgtactcccttgggaattctaaatgtgacttttttacctatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="119861" stop="121156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120161" g_stop="120295" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120296" i_stop="120500" i_length="205">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120501" g_stop="120856" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="491" r_length="356" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="502"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E276631" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120161" e_stop="120295"/>
          <exon e_start="120501" e_stop="120856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAGGTATCTTATCTCTCTTAACATCATTTAGAATGGAAGTTTAAAAAGTTAGGTGCTTACATGATGTTTGAGGAACTTTTTATACTAAGATGTTGTGATAAAATTGATCCCATGCAGTAACTAGAACATGTTATCTTCAGAAATGAGATAAAATGAAAACATGTGGTGTGTGCAAACTCTAATCCGTGTTCTCGTTAAACAATTACAGGGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTGATGTCCGCATAAATGTACTCCCTTGGGAATTCTAAATGTGACTTTTTTACCTATTTA</genome_strand>
        <mrna_strand>GGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAG.............................................................................................................................................................................................................GGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATATACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTATAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTGATGTCCGCATAAATGTACTCCCTTGGGAATTCTAAATGTGACTTTTTTACCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711777" ref_strand="+" ref_description="SGN-E711777 [FB02DH02]">
      <seq>cgttaaaccagaaccaatagaccgttgcttcacggacggaccccttgtgacgggggcagcttggccaggtcatcctgagtttatttctcagttcatggcactgcttggagtgcatgtaaaattttaggctacttgtttgtttgacatgttttgccaggtgatgagaataaatttttttttaattgtaacagaataatgagtgtgtttttataatgttcgaaaatcactaaaactactgatgtccgcataaatgtactcccttgggaattctaaatgtgacttttttacctatttacttagagggcgtttggtaggatgtattaaaagaaataatccatgtattagatgtggtataattcaatgctgtgtttggtaggaatgtgagcctatgtataactaatccatggattagttaatacatcctacatggtattatgtgatgtattgctaataccttccatttggaggtattagctctaatactatggactattctaggtaaagacnaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="120263" stop="121374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120562" g_stop="121059" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="526"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E711777" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120562" e_stop="121059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAA-TTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTGATGTCCGCATAAATGTACTCCCTTGGGAATTCTAAATGTGACTTTTTTACCTATTTACTTAGAGGGCGTTTGGTAGGATGTATTAAAAGAAATAATCCATGTATTAGATGTGGTATAATTCAATGCTGTGTTTGGTAGGAATGTGAGCCTATGTATAACTAATCCATGGATTAGTTAATACATCCTACATGGTATTATGTGATGTATTGCTAATACCTTCCATTTGGAGGTATTAGCTCTAATACTATGGACTATTCTAG</genome_strand>
        <mrna_strand>CGTTA-AACCAGAACCAATAGACCGTTGCTTCACGGACGGACCCCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTGATGTCCGCATAAATGTACTCCCTTGGGAATTCTAAATGTGACTTTTTTACCTATTTACTTAGAGGGCGTTTGGTAGGATGTATTAAAAGAAATAATCCATGTATTAGATGTGGTATAATTCAATGCTGTGTTTGGTAGGAATGTGAGCCTATGTATAACTAATCCATGGATTAGTTAATACATCCTACATGGTATTATGTGATGTATTGCTAATACCTTCCATTTGGAGGTATTAGCTCTAATACTATGGACTATTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308024" ref_strand="+" ref_description="SGN-E308024 [cLEY-14-G4]">
      <seq>attttttccagactcttccttatagagagagaaagagagattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126134" stop="128552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126434" g_stop="126886" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="569" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128252" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="627" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E308024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126434" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCCAGACTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCAT</genome_strand>
        <mrna_strand>ATTTTTTCCAGACTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324726" ref_strand="+" ref_description="SGN-E324726 [cTOC-8-D6]">
      <seq>cagactcttccttatagagagagaaagagagattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcanggatagctgctgcgcgtttccttcacaatgcatctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126142" stop="128403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126442" g_stop="126886" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128103" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="559" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E324726" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126442" e_stop="126886"/>
          <exon e_start="127990" e_stop="128103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTA</genome_strand>
        <mrna_strand>CAGACTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCANGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358838" ref_strand="+" ref_description="SGN-E358838 [cLHT-24-H2]">
      <seq>ctcttccttatagagagagaaagagagattattcactattgagatctagagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctgtatcattcatctcaattaatttctaatttcttaattcctatacaaccgtaatttacttcccaatcaccttccttctctgttttttccctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatcattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126146" stop="128396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126446" g_stop="126886" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128096" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="550" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E358838" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126446" e_stop="126886"/>
          <exon e_start="127990" e_stop="128096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCT--AGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCA</genome_strand>
        <mrna_strand>CTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTGTATCATTCATCTCAATTAATTTCTAATTTCTTAATTCCTATACAACCGTAATTTACTTCCCAATCACCTTCCTTCTCTGTTTTTTCCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATCATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338594" ref_strand="+" ref_description="SGN-E338594 [cTOE-15-I2]">
      <seq>ttccttatagagagagaaagagagattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcanggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126149" stop="128549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126449" g_stop="126886" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="554" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128249" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="609" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E338594" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126449" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACT</genome_strand>
        <mrna_strand>TTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCANGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265630" ref_strand="+" ref_description="SGN-E265630 [cLEI-14-F19]">
      <seq>ttatagagagagaaagagagattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgctgcgtcgatatttgatccacgttatgattatgagctggcttgatgagctacggtcttcttctaatctcaaccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaacccggggnnacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126153" stop="128321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126453" g_stop="126886" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128021" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="466" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E265630" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126453" e_stop="126886"/>
          <exon e_start="127990" e_stop="128021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCAT</genome_strand>
        <mrna_strand>TTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGCTGCGTCGATATTTGATCCACGTTATGATTATGAGCTGGCTTGATGAGCTACGGTCTTCTTCTAATCTCAACCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCCGGGGNNACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302029" ref_strand="+" ref_description="SGN-E302029 [cLEX-3-M6]">
      <seq>agagaaagagagattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatattcgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaattgctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtgcttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126161" stop="127187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126461" g_stop="126886" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E302029" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126461" e_stop="126886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG</genome_strand>
        <mrna_strand>AGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTCGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTGCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTGCTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206774" ref_strand="+" ref_description="SGN-E206774 [cLEC-31-F2]">
      <seq>gaaagagagattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattggggaggatttgttgcgtcgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126164" stop="127032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126464" g_stop="126732" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E206774" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126464" e_stop="126732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACC</genome_strand>
        <mrna_strand>GAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGGGGAGGATTTGTTGCGTCGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332006" ref_strand="+" ref_description="SGN-E332006 [cTOD-16-B2]">
      <seq>agagattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126169" stop="128794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126469" g_stop="126886" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="534" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="623" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128389" g_stop="128494" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="729" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E332006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126469" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGAC</genome_strand>
        <mrna_strand>AGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323803" ref_strand="+" ref_description="SGN-E323803 [cTOC-5-J20]">
      <seq>agattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126171" stop="128327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126471" g_stop="126886" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128027" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="454" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E323803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126471" e_stop="126886"/>
          <exon e_start="127990" e_stop="128027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCA</genome_strand>
        <mrna_strand>AGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332557" ref_strand="+" ref_description="SGN-E332557 [cTOD-18-M9]">
      <seq>gattattcactattgagatctagagagagacgtactacgattcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagtgttcaagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126172" stop="129261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126472" g_stop="126886" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="531" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="620" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="734" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128902" g_stop="128961" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="793" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E332557" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126472" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGG</genome_strand>
        <mrna_strand>GATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAG-TGTTCAAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260501" ref_strand="+" ref_description="SGN-E260501 [cLEG-54-A8]">
      <seq>tcagagattaatttctggtcgatctatgcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126213" stop="129268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126513" g_stop="126886" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="490" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="579" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="693" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128902" g_stop="128968" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="760" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E260501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126513" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTT</genome_strand>
        <mrna_strand>TCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294356" ref_strand="-" ref_description="SGN-E294356 [cLET-14-N24](-)">
      <seq>gcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacgggcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgcaattggtggaggtatctcaaggatagctgctgcgcgtttccttcacaatgcatcttttaaggatctcttattggagtcacgggatagactgagtggtcgcatacataccgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126240" stop="128548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126540" g_stop="126886" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="463" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128248" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="517" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E294356" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294356" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="126540" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTAC</genome_strand>
        <mrna_strand>GCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGGCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGCAATTGGTGGAGGTATCTCAAGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GATCTCTTATTGGAGTCACGGGATAGACTGAGTGGTCGCATACATACCGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294355" ref_strand="+" ref_description="SGN-E294355 [cLET-14-N24]">
      <seq>gcaaacgaagcaaaaatcttcgatcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacgggcttcttctaatctcagccgcttcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgcaattggtggaggtatctcaaggatagctgctgcgcgtttccttcacaatgcatcttttaaggatctcttattggagtcacgggatagactgagtggtcgcatacataccgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126240" stop="128548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126540" g_stop="126886" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="463" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128248" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="517" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E294355" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126540" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTAC</genome_strand>
        <mrna_strand>GCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGGCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGCAATTGGTGGAGGTATCTCAAGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GATCTCTTATTGGAGTCACGGGATAGACTGAGTGGTCGCATACATACCGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335815" ref_strand="+" ref_description="SGN-E335815 [cTOE-6-C14]">
      <seq>tcaattgtggaggatttgttgcgttgatatttgatccaggttatgattatgagctggcttgataagctacgggcttcttcttatctcatccgcttgattgccggacttcttatattcatgctttatcattcatctcaattaatttctaattgcttgattcctatacaaccgtaatttacttgacaatcacctcccttctctgtttttttgctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttgtgttcacggatttcacggcaatcaaagatgatgattctggttccagcaatatatttgacggcattttaccaccccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126263" stop="127187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126563" g_stop="126886" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E335815" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126563" e_stop="126886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG</genome_strand>
        <mrna_strand>TCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGGCTTCTTCTTATCTCATCCGCTTGATTGCCGGACTTCTTATATTCATGCTTTATCATTCATCTCAATTAATTTCTAATTGCTTGATTCCTATACAACCGTAATTTACTTGACAATCACCTCCCTTCTCTGTTTTTTTGCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTGTGTTCACGGATTTCACGGCAATCAAAGATGATGATTCTGGTTCCAGCAATATATTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302934" ref_strand="+" ref_description="SGN-E302934 [cLEW-26-D11]">
      <seq>ttgatatttgatccaggttatgattatgagctggcttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgcctttatcattcatctcaattaatttctaatttcttgattcctataccaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126286" stop="128511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126586" g_stop="126886" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="419" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128211" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="436" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E302934" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126586" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATG-CTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATA-CAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTC</genome_strand>
        <mrna_strand>TTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACCAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330353" ref_strand="+" ref_description="SGN-E330353 [cTOD-4-A21]">
      <seq>cttgatattctacggtcttcttctaatctggggcgctgcattgccggccttcttatcttcatgctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcaaggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126320" stop="128731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126620" g_stop="126886" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="383" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="472" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128389" g_stop="128431" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="515" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E330353" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126620" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATA</genome_strand>
        <mrna_strand>CTTGATATTCTACGGTCTTCTTCTAATCTGGGGCGCTGCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAAGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330360" ref_strand="+" ref_description="SGN-E330360 [cTOD-4-C21]">
      <seq>cttgataagctacggtcttcttctaatctcagccgcttcattgccggccttcttatcttcatgcctttatcattcatctcaattaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcaaggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126320" stop="128708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126620" g_stop="126886" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="384" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="473" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128389" g_stop="128408" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="493" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E330360" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126620" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATG-CTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATG</genome_strand>
        <mrna_strand>CTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAAGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708813" ref_strand="+" ref_description="SGN-E708813 [FA36DD04]">
      <seq>ttatcattcatctcacttaatttctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcacgaacaagttctcactggtggtcatggtcttatggcgcaaagttacaacccagtcataaaggccttatccaaagacattgatatccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126385" stop="130038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126685" g_stop="126886" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="318" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="407" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="521" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="609" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="695" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="798" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="129652" g_stop="129738" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="885" r_length="87" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E708813" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126685" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGT</genome_strand>
        <mrna_strand>TTATCATTCATCTCACTTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAC............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGCGCAAAGTTACAACCCAGTCATAAAGGCCTTATCCAAAGACATTGATATCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264508" ref_strand="+" ref_description="SGN-E264508 [cLEG-67-M23]">
      <seq>ctaatttcttgattcctatacaaccgtaatttacttcacaatcacctcccttctctgtttttttcctctgttcaaaaacattcactcttctctcccgatttaaacaacgtcggcgtttttgttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126408" stop="128407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126708" g_stop="126886" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="295" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128207" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="308" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E264508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126708" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGG</genome_strand>
        <mrna_strand>CTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309790" ref_strand="+" ref_description="SGN-E309790 [cLEZ-10-C7]">
      <seq>gttcacggatttcatggaaatcaaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126528" stop="129278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126828" g_stop="126886" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="175" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="264" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="378" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128902" g_stop="128978" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="455" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E309790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126828" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAA</genome_strand>
        <mrna_strand>GTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206643" ref_strand="+" ref_description="SGN-E206643 [cLEC-31-P7]">
      <seq>aaagatgatgattctggttccagcaatttatttgacggcattttaccaccccgcttaggtaggctgcatagttcagctccgtctgtaattgtaattggtggaggtatctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccggtggctccattgatacgtcgattagggctcaccctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="126550" stop="128754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126850" g_stop="126886" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127990" g_stop="128105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="153" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="242" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128389" g_stop="128454" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="308" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E206643" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126850" e_stop="126886"/>
          <exon e_start="127990" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGATGATTCTGGTTCCAGCAATTTATTTGACGGTGAGTTCCCTATTTTACTCCAATATTGTTTAATTCATGAAATAATCATTTCTATTTCACTTGAGCTGTAACTAGGACCTGTGGTTTTTCCAATTAATGATTACTCTATTTGATGTCATCTGATTGTGTTTAAATGAGTATGATATTTTAACCATTGCGGCATTGTCGAGCTAAATGAATTAGTACTAAGTAAAAGACGAACAAGAAACCAAAACACAGAAGAACTTACTGATTATGAAATCTTTGAAGTCATAGTAGTAAAAGTCTTAATTCGGATAGAATTGTTAAATTTTGACATAGATGATGCTAGAATTATATTTCATTCGTCCGGTAATCTACCAAAGATAAAGATGATGCTATGCTAGCAGCTCCATGTGCAATTGTTTCAAGACCGACTAGAATTTCTGTTTTTCTTTTCCTGCCAAACAAAATTCTCTTGATTGATACATGTGCAAAGCCTGAAGTCATTCAAGTAAGGATTGGTTGTGGACAATAGACACAAAAGTGTCTTACCCTCTTCGGACATTATAAAATGGGAAGTGAATTACCTCGGGTAAAATGTTGATAAAACAAGCATTATGTCTTATTTCATATTTCAGATGTTGTTGATATCACTTTGAGCTTGAAAGAACTATAAAATAATTATATCTCGTCATAGTAGTACAAGTCTTACTTAGGATAGAATTGTTCTGTTTGACATAAATGATGCTATAATTATCTTTCATTCGTCTGGTTTTTTAACAACGATTAAGATGGTGTTATGCAGCAGCTCCATGTTTGGATATTATTAAATGGACAACTCTTTGGACTATGAAAATTTCTCTTAGACGGCTTCCGCAGATATCAATAAATGAATGTTTACTTGAATTTAAAATTTGATGTTAGATTTTCTCTTCCAGAAACTTTGAGTTACATGCATTTTGATTGTCTACTCATGAGGAATTTTATTCTTATCTTAATTCTTCACGTTAAACATTTTGTTTTTACTTTGTTGGGAGTGTTGAAGTATAAATGAAGAACTTTATATTCATGTCCATCATATTGCTTATTCTAGTGATTTCTATCGGTGGAACTTAATTTGCTCCTTTCTTTTGCTTGACTAGGCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATA</genome_strand>
        <mrna_strand>AAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGGTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701068" ref_strand="+" ref_description="SGN-E701068 [FA14DG08]">
      <seq>ctcagggatagctgctgcgcgtttccttcacaatgcatcttttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127760" stop="130565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128060" g_stop="128105" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="135" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="249" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="337" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="423" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="526" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="624" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="130062" g_stop="130265" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="828" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E701068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128060" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACG</genome_strand>
        <mrna_strand>CTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701215" ref_strand="+" ref_description="SGN-E701215 [FA15BD08]">
      <seq>tttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcgggtattttcttaatctccacaaggcaacaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127893" stop="130666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128100" g_stop="128105" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="95" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="209" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="297" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="383" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="486" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="584" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="130062" g_stop="130366" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="889" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E701215" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128100" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGAC</genome_strand>
        <mrna_strand>TTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGGTATTTTCTTAATCTCCACAAGGCAACAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370085" ref_strand="+" ref_description="SGN-E370085 [TUS-26-D10]">
      <seq>tttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggttattaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggtatgcagagaaaatgtttctcatgtggtctgctattgtctgttggaagtggaatgaagttatacatgcgcatacatattgtgttatttgtaatgcaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagaccacgatctctctgaaaacctgggatcaggaacaagttctcactggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127893" stop="129970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128100" g_stop="128105" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="95" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="209" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="297" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129081" g_stop="129367" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="585" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129652" g_stop="129670" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="604" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E370085" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128100" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129367"/>
          <exon e_start="129652" e_stop="129670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGA-CACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTG</genome_strand>
        <mrna_strand>TTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTTATTAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACCACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258593" ref_strand="+" ref_description="SGN-E258593 [cLEG-47-J8]">
      <seq>tttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggtatgcagagaaaatgtttctcatgtggtctgctattgtctgttggaagtggaatgaagttatacatgcgcatacatattgtgttatttgtaatgcaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcacaatggaggcatggttcgctgccgatgcatacacgatctctctgaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127893" stop="129659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128100" g_stop="128105" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="95" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="209" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="297" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129081" g_stop="129359" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="576" r_length="279" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E258593" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128100" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCT</genome_strand>
        <mrna_strand>TTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCACAATGGAGGCATGGTTCGCTGCCGATGCATACACGATCTCTCTGAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256545" ref_strand="+" ref_description="SGN-E256545 [cLEG-38-A10]">
      <seq>tttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggtatgcagagaaaatgtttctcatgtggtctgctattgtctgttggaagtggaatgaagttatacatgcgcatacatattgtgttatttgtaatgcaggcaagaaggactttcccatgaggtgttgcaatggtacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127893" stop="129606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128100" g_stop="128105" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="95" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="209" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="297" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129081" g_stop="129306" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="523" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E256545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128100" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATG</genome_strand>
        <mrna_strand>TTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259090" ref_strand="+" ref_description="SGN-E259090 [cLEG-41-D11]">
      <seq>tttaaggttctcttattggagtcacgggatagactgggtggtcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127893" stop="129449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128100" g_stop="128105" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128195" g_stop="128283" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="95" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="209" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="297" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129081" g_stop="129149" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="366" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E259090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128100" e_stop="128105"/>
          <exon e_start="128195" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGGTGGGTATACTCAGGCTTTCTAACTCTTTCACATGTAACAACCTTTTATTCTTTCATTCTTAAAAACGACACTTTCAATATTTGTCCAGGTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGAC</genome_strand>
        <mrna_strand>TTTAAG.........................................................................................GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252085" ref_strand="+" ref_description="SGN-E252085 [cLEG-8-N4]">
      <seq>tcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaagggtacaacccagtcataaaggccttatcaaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgcctgtattataactgtgcctctaggtggtctgaaagccaactttgattgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127930" stop="130487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128230" g_stop="128283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="256" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="342" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="445" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="544" r_length="99" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="130062" g_stop="130187" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="671" r_length="127" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E252085" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128230" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATC-AAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAAC-TTGATTGAGTT</genome_strand>
        <mrna_strand>TCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGGTACAACCCAGTCATAAAGGCCTTATCAAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCCTGTATTATAACTGTGCCTCTAGGTGGTCTGAAAGCCAACTTTGATTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261524" ref_strand="+" ref_description="SGN-E261524 [cLEG-57-E24]">
      <seq>tcgcatacataccgactactcatttggttgcccagttgatatgggagcatcatggctccacggggtgtgtgatgagaatccgttggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127930" stop="130034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128230" g_stop="128283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="256" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="342" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="445" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129652" g_stop="129734" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="528" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E261524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128230" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATAT</genome_strand>
        <mrna_strand>TCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG.........................................................................................................GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254024" ref_strand="+" ref_description="SGN-E254024 [cLEG-34-C24]">
      <seq>taccgactactcatttgggtgttcagttgacatgggagcatcatggctccacgtggtgtgtgatgagaatccggtggctccattgatacgtcgattagggctcaccctatatcgcactagtggtgacaactcagtgctgtatgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcaaaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="127939" stop="130001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128239" g_stop="128283" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105">
            <donor d_prob="0.827" d_score="0.91"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128389" g_stop="128502" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="247" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="333" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="436" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129652" g_stop="129701" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="486" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E254024" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128239" e_stop="128283"/>
          <exon e_start="128389" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATGGTGAGGGAATTTAAACTTTTCCTCCAAAATTATCTTCCCAGATCTGGAAGATTATAACTTTCCAATCTGCAATTAATTGACTCTGATCATTAAACATTCTTTCAGGCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCC</genome_strand>
        <mrna_strand>TACCGACTACTCATTTGGGTGTTCAGTTGACATGGGAGCATCATG.........................................................................................................GCTCCACGTGGTGTGTGATGAGAATCCGGTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAAAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358058" ref_strand="+" ref_description="SGN-E358058 [cLHT-23-A17]">
      <seq>atacgtttattagggctcaccctatatcgcactaggggtgacaactcagtgctgtatgaccatgacttanaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacagacatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgctgatgcagacacgatctctctgaaaacctgggatcaggaacaagttctaactggcggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="128129" stop="130449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128429" g_stop="128502" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="162" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="248" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="351" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="449" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="130062" g_stop="130149" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="537" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E358058" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128429" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACT</genome_strand>
        <mrna_strand>ATACGTTTATTAGGGCTCACCCTATATCGCACTAGGGGTGACAACTCAGTGCTGTATGACCATGACTTANAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGACATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCTGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTAACTGGCGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268870" ref_strand="+" ref_description="SGN-E268870 [cLEM-4-B21]">
      <seq>tgaccatgacttagaaagttacatgctgtttgacatggatggtcatcaagttcctcaaaacacagttgttcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaagtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaagatgggagaaattttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="128185" stop="130499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128485" g_stop="128502" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128902" g_stop="128989" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="106" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="192" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="295" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="130062" g_stop="130199" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="531" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E268870" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128485" e_stop="128502"/>
          <exon e_start="128902" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCATGACTTAGAAAGGTAACCTGGATGACATACATTGAACAAATGATTTTATCATGAATTAGTCTGCATTTTCCCTCTTTTGTTTGTTCACTCTCTCTCTCTCTCTCTTGTTAGATATAGGTGTTAAATTTTTACTTTCTATAACATCATCCTGATTCAACTAATCAGAATATTGACACTAACAAATTTGGTAGTTTGTTTTGAATTTAAATAAAAAAAGGACTTACAATTGGCCTGGGTGGAATGAAATTTAGTTGCCTCCAGAGTTCCAATGTGGTCTGGTTTCAAAGTCTCCTGCATTTCCTGAATTTTAGCCTCTGCTCTTTTTTCTGTTCTTTTTTTATTTTTCTGTGCAAATTAAATAAAGATTCTATTAACTCAGTCAAGAGCTTAATCGTGTTTTCCGTTCAATAGTTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACT</genome_strand>
        <mrna_strand>TGACCATGACTTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAAGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAAGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261240" ref_strand="+" ref_description="SGN-E261240 [cLEG-68-A3]">
      <seq>tcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctangtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaataacagatgaatctgctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="128653" stop="130742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128953" g_stop="128989" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="123" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="226" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="324" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130062" g_stop="130442" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="705" r_length="381" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E261240" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128953" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAG-AATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGA</genome_strand>
        <mrna_strand>TCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTANGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAA-TAACAGATGAATCTGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258768" ref_strand="+" ref_description="SGN-E258768 [cLEG-50-G16]">
      <seq>tcaagttggagaagttttcaagaaaatcctcagcgagactgagaaagtgaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcgggtattttcttaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="128653" stop="130649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128953" g_stop="128989" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91">
            <donor d_prob="0.842" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129081" g_stop="129166" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="123" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="226" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="324" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130062" g_stop="130349" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="612" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E258768" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128953" e_stop="128989"/>
          <exon e_start="129081" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAGGTTGATCTTTAACTTTAAACTACTCAAAAATGCAGTTCCTCCTAAGATTTTAAAAAGAGACCAGTGCTGATTATTTGTATTGCTTATGCAGACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCT</genome_strand>
        <mrna_strand>TCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG...........................................................................................ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGGTATTTTCTTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705288" ref_strand="+" ref_description="SGN-E705288 [FA26CG09]">
      <seq>cggaggaatgagcatagtcatgacttgtcagttcttcaagcaatatctattgtactggacaggcatccagaattgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcagaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="128792" stop="131398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129090" g_stop="129166" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="180" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="278" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130062" g_stop="130491" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="708" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131002" g_stop="131098" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="805" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E705288" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129090" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130491"/>
          <exon e_start="131002" e_stop="131098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGC</genome_strand>
        <mrna_strand>CGGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706909" ref_strand="+" ref_description="SGN-E706909 [FA31CB02]">
      <seq>attgaggcaagaaggactttcccatgaggtgttgcaatggtacatatgcaaaatggaggcatggttcgctgcggatgcacacactatctctctgaaaacctgggatcaggaacaagatctcactggtggtcatggtcttatggtgcaaggctacaacccagtcataaaagccttatcaaaacacattgatatccgattaaatcacagggtcaagaggattactaatgggtgataacaaggtgatggttaccgttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctacgtgttctgaaagccaacttgattgagtttgatccagaactgccataatggaaacattctgcaatagcagatcttgaagtatgcaatgaaaaccacattgcattaccatttgataatgaattttggccaaacgtagaattgttaagtgttgatgcacccacttcatatgcttgcggatattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctgcaagacttgcttgtgacctcaataaattaacacatgaatctgctgctgagtttgcaatgttgcatgtgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccacacccccttggatgttattcttatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="128960" stop="131365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129161" g_stop="129166" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98">
            <donor d_prob="0.827" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129265" g_stop="129367" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="109" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="207" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130062" g_stop="130491" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="638" r_length="431" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131002" g_stop="131065" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="702" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E706909" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129161" e_stop="129166"/>
          <exon e_start="129265" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130491"/>
          <exon e_start="131002" e_stop="131065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGT-ATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACT</genome_strand>
        <mrna_strand>ATTGAG..................................................................................................GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAAAATGGAGGCATGGTTCGCTGCGGATGCACACACTATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGATCTCACTGGTGGTCATGGTCTTATGGTGCAAGGCTACAACCCAGTCATAAAAGCCTTATCAAAACACATTGATATCCGATTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACTAATGGGTGATAACAAGGTGATGGTTACCGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTACGTGTTCTGAAAGCCAACTTGATTGAGTTTGATCCAGAACTGCCATAATGGAAACATTCTGCAATAGCAGATCTTGAAGTATGCAATGAAAACCACATTGCATTACCATTTGATAATGAATTTTGGCCAAACGTAGAATTGTTAAGTGTTGATGCACCCACTTCATATGCTTGCGGATATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGCAAGACTTGCTTGTGACCTCAATAAATTAACACATGAATCTGCTGCTGAGTTTGCAATGTTGCATGTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCACACCCCCTTGGATGTTATTCTTATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707468" ref_strand="+" ref_description="SGN-E707468 [FA33AD08]">
      <seq>cgctgaatggaggcatggttcgctgcggatgcagacacgatctctctgaaaacctgggatcaggaacaagttctcactggtggtcatggtcttatggtgcaaggttacaacccagtcataaaggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcatcaagggtcggttcatggtgcgtatgaagctggaattatggctggtgaaacgtgccgccgacatctcatcaaaagacatggaagtctggaaatggttcaggctgtttcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="129006" stop="131568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129305" g_stop="129367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129652" g_stop="129749" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="161" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130062" g_stop="130491" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="591" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131002" g_stop="131268" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="858" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E707468" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129305" e_stop="129367"/>
          <exon e_start="129652" e_stop="129749"/>
          <exon e_start="130062" e_stop="130491"/>
          <exon e_start="131002" e_stop="131268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAGGCAAGCGTTTTTTCATTTACTGTTATTATAAGCAGTTTATTGGGTGTTTGATGCAGTTCCCAATTTCATTATCTTGCTCAGATAAGGTCTTATTTCGAAATAAGTAACTTCTCAAAGATTAAAACAAGGGCTTTACAAGATGCTGCTATTGATAGCAGTCACTTATTTTGACTTATTCCCACATTGCAAATTGGGCACAATCATTTGATAGATAATTTTTGAAAACATTTGAACAATTGTATTGTTTTAGGCGAGTAATATTGATAGTTAAACTTTTTATGCAGGAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCT</genome_strand>
        <mrna_strand>CGCTGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG............................................................................................................................................................................................................................................................................................GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260728" ref_strand="+" ref_description="SGN-E260728 [cLEG-54-F2]">
      <seq>ggccttatcaaaagacattgatatccgtttaaatcacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcatcaagggtcggttcatggtgcgtatgaagctggaattatggctggtgaaacgtgccgccgacatctcatcaaaagacatggaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="129411" stop="131543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129711" g_stop="129749" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312">
            <donor d_prob="0.860" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130062" g_stop="130491" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="469" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131002" g_stop="131243" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="711" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E260728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129711" e_stop="129749"/>
          <exon e_start="130062" e_stop="130491"/>
          <exon e_start="131002" e_stop="131243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAGGTGCAAATGGGTTTCTCCAATATGCGGAAGTTCTACTTTTTCTCTTTGTTTCTCGATATAGCTGCAATGACTGTAAAACCATATGAACTCTTTCAATCCTGTTTCTATTTAAGAAATGAGGTCAACTTTTTTACACCTTTGGTTACTTGATTTCCTAAGATATTTAAAACAAAATGTTGTTCCTTTCCTCCATGGAGATTTCTTTTTAGTTACAGCTCTACAGCCATAAATGATCTTTCCTCTATGGTATTTTTCCAACTTTTGTTTATTTTGAAGAAACTAAACTGTTTTGTATGGATCTAATTTTACCAGGGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCT</genome_strand>
        <mrna_strand>GGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG........................................................................................................................................................................................................................................................................................................................GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284582" ref_strand="+" ref_description="SGN-E284582 [cLES-3-C23]">
      <seq>taaattacagggtcaagaggattacaaatgggtataacaaggtgatggttacagttaaggatgggagaaattttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="129755" stop="130724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130062" g_stop="130424" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="373" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E284582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130062" e_stop="130424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAAC</genome_strand>
        <mrna_strand>GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688994" ref_strand="+" ref_description="SGN-E688994 [t3_tus_55_K13]">
      <seq>ttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgtaagtaatctctgcttctacaccaattgaattacaagtcttagctagtacatgcatgagaaaggactgaatttcaatagtgttgcgcacatgatagtttactttggtctatttttggttcaattggtgagttcacaccatgtcgattattagtttattacagtttggtaattgttcattttcactgtacttttaacgtaaaaaggtaaaacaatccgantagaaagagcgaaatatagaagtagaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="129824" stop="131042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130124" g_stop="130742" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E688994" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130124" e_stop="130742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGA</genome_strand>
        <mrna_strand>TTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACACCATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGANTAGAAAGAGCGAAATATAGAAGTAGAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551173" ref_strand="+" ref_description="SGN-E551173 [TUS-55-K13]">
      <seq>ttattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgtaagtaatctctgcttctacaccaattgaattacaagtcttagctagtacatgcatgagaaaggactgaatttcaatagtgttgcgcacatgatagtttactttggtctatttttggttcaattggtgagttcacaccatgtcgattattagtttattacagtttggtaattgttcattttcactgtacttttaacgtaaaaaggtaaaacaatccgantagaaagagcgaaatatagaagtagaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="129824" stop="131041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130124" g_stop="130741" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E551173" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130124" e_stop="130741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGG</genome_strand>
        <mrna_strand>TTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACACCATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGANTAGAAAGAGCGAAATATAGAAGTAGAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262683" ref_strand="+" ref_description="SGN-E262683 [cLEG-63-I23]">
      <seq>tattgcagatgctgctattataactgtgcctctaggtgttctgaaagccaacttgattgagtttgagccaaaactgccagaatggaaacaatctgcaatagcagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgtaagtaatctctgcttctacaccaattgaattacaagtcttagctagtacatgcatgagaaaggactgaatttcaatagtgttgcgcacatgatagtttactttggtctatttttggttcaattggtgagttcacaccatgtcgattattagtttattacagtttggtaattgttcattttcactgtacttttaacgtaaaaaggtaaaacaatccgatagaaaagagcgaaatatagaagtagaagggaaaatgaggaagcacctccatcctcttatcactttctttcatttcttattttacttcaaaaattgtctttctacattgaataaataagggaagtgatgcatatttcctttcattaattacggcaaactataaagcaaatctgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="129825" stop="131187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130125" g_stop="130887" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E262683" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130125" e_stop="130887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATA-TTCCTTTCATTAATTACGGCAAACTAT-AAGCAAATCTGCATTTG</genome_strand>
        <mrna_strand>TATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACACCATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTTCCTTTCATTAATTACGGCAAACTATAAAGCAAATCTGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251780" ref_strand="+" ref_description="SGN-E251780 [cLEG-15-H4]">
      <seq>cagatcttggtgtaggcaatgaaaacaagattgcattacgatttgataatgtattttggccaaacgtagaattgttaggtgttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcatcaagggtcggttcatggtgcgtatgaagctggaattatggctggtgaaacgtgccgccgacatctcatcaaaagacatggaagtctggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="129926" stop="131550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130226" g_stop="130491" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131002" g_stop="131250" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="515" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E251780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130226" e_stop="130491"/>
          <exon e_start="131002" e_stop="131250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATG</genome_strand>
        <mrna_strand>CAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711660" ref_strand="+" ref_description="SGN-E711660 [FB02CE02]">
      <seq>ccgattagataatgtattttggccaaacgtagaattgttaggtcttgttgcacccacttcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcgggtccttgtttacatggctgctggaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcatcaagggtcggttcatggtgcgtatgaagctggaattatggctggtgaaacgtgccgccgacatctcatcaaaagacatggaagtctggaaatggttcaggctgtttcctctagggaggagacccttgaagcagcagttcctctccaaatctcaagaatgtgatatatcttctctgaatttgcaagttacatttcaagtaacttatgtagtttgttccagtttgtactattaccttgtatgaataaattaacgattatgtctccgtgcaactgaaatattcaaactatatatatatatgtcagactttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="129964" stop="131768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130263" g_stop="130491" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131002" g_stop="131467" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="695" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="709"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E711660" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130263" e_stop="130491"/>
          <exon e_start="131002" e_stop="131467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTA</genome_strand>
        <mrna_strand>CCGATTAGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTCTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251689" ref_strand="+" ref_description="SGN-E251689 [cLEG-15-H14]">
      <seq>tcatatgcttgcggttattttcttaatctccacaaggcaacaggacatcggatccttgtttacatggctgctggaagacttgcttgtgacctcaagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="130021" stop="131457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130321" g_stop="130491" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131002" g_stop="131157" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="327" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E251689" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130321" e_stop="130491"/>
          <exon e_start="131002" e_stop="131157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCAT</genome_strand>
        <mrna_strand>TCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGATCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCAAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349372" ref_strand="+" ref_description="SGN-E349372 [cTOS-1-M8]">
      <seq>gaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcatcaagggtcggttcatggtgcgtatgaagctggaattatggctggtgaaacgtgccgccgacatctcatcaaaagacatggaagtctggaaatggttcaggctgtttcctctagggaggagacccttgaagcagcagttcctctccaaatctcaagaatgtgatatatcttctctgaatttgcaagttacatttcaagtaacttatgtagtttgttccagtttgtactattaccttgtatgaataaattaacgattatgtctccgtgcaactgaaatattcaaactatatatatatatgtcagactttttaattgaccatgtctgagagttttattatttcttctgtcggaacaattagttgtttattatgttttcattatccttgaatangaaatttgtattggaaagcattgcacaagcatttccctttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="130094" stop="131899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130394" g_stop="130491" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131002" g_stop="131601" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="698" r_length="600" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E349372" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130394" e_stop="130491"/>
          <exon e_start="131002" e_stop="131601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTAATTGACCATGTCTGAGAGTTTTATTATTTCTTCTGTCGGAACAATTAGTTGTTTATTATGTTTTCATTATCCTTGAATAGGAAATTTGTATTGGAAAGCATTGCACAAGCATTTCCCTTTGAATGAATCACATT</genome_strand>
        <mrna_strand>GAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTAATTGACCATGTCTGAGAGTTTTATTATTTCTTCTGTCGGAACAATTAGTTGTTTATTATGTTTTCATTATCCTTGAATANGAAATTTGTATTGGAAAGCATTGCACAAGCATTTCCCTTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356278" ref_strand="+" ref_description="SGN-E356278 [cTOS-20-P22]">
      <seq>gaagacttgcttgtgacctcgagaaattaacagatgaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcatcaagggtcggttcatggtgcgtatgaagctggaattatggctggtgaaacgtgccgccgacatctcatcaaaagacatggaagtctggaaatggttcaggctgtttcctctagggaggagacccttgaagcagcagttcctctccaaatctcaagaatgtgatatatcttctctgaatttgcaagttacatttcaagtaacttatgtagtttgttccagtttgtactattaccttgtatgaataaattaacgattatgtctccgtgcaactgaaatattcaaactatatatatatatgtcagactttttaattgaccatgtctgagagttttattatttcttctgtcggaacaattagttgtttattatgttttcattatccttgaatangaaatttgtattggaaagcatttgcacagcatttccctttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="130094" stop="131899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130394" g_stop="130491" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131002" g_stop="131600" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="697" r_length="599" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E356278" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130394" e_stop="130491"/>
          <exon e_start="131002" e_stop="131600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTAATTGACCATGTCTGAGAGTTTTATTATTTCTTCTGTCGGAACAATTAGTTGTTTATTATGTTTTCATTATCCTTGAATAGGAAATTTGTATTGGAAAGCA-TTGCACAAGCATTTCCCTTTGAATGAATCACAT</genome_strand>
        <mrna_strand>GAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTAATTGACCATGTCTGAGAGTTTTATTATTTCTTCTGTCGGAACAATTAGTTGTTTATTATGTTTTCATTATCCTTGAATANGAAATTTGTATTGGAAAGCATTTGCAC-AGCATTTCCCTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349958" ref_strand="+" ref_description="SGN-E349958 [cTOS-4-A3]">
      <seq>gaatctgctgctgagtttgcaatgttgcagttgaagaagatgttccctgatgccactaagcctgttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcatcaagggtcggttcatggtgcgtatgaagctggaattatggctggtgaaacgtgccgccgacatctcatcaaaagacatggaagtctggaaatggttcaggctgtttcctctagggaggagacccttgaagcagcagttcctctccaaatctcaagaatgtgatatatcttctctgaatttgcaagttacatttcaagtaacttatgtagtttgttccagtttgtactattaccttgtatgaataaattaacgattatgtctccgtgcaactgaaatattcaaactatatatatatatgtcagactttttannannaaaannaanaannaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="130129" stop="131767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130429" g_stop="130491" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131002" g_stop="131467" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="529" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="567"/>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E349958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130429" e_stop="130491"/>
          <exon e_start="131002" e_stop="131467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTA</genome_strand>
        <mrna_strand>GAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277097" ref_strand="+" ref_description="SGN-E277097 [cLEN-22-J22]">
      <seq>catcctcttatcactttctttcatttcttattttacttcaaaaattgtctttctacattgaataaataagggaagtgatgcatattcctttcattaattacggcaaactataagcaaatctgcatttgtttgtctaacactcctataacgtaaacttagctaaagcagtgttgagtaatcagagaatgctagcacaaaagcacctgtaagcgctcttgtaaatcatccggtatattttacaggttcagtatcttgtatctcactggggtacggatccagacacccttggatgttattcttatgacttggttggaaaaccaacggatgcttacgataggcttcgggcaccaattggtaatctattctttggaggggaagctgtgagcagtgatgatcatcaagggtcggttcatggtgcgtatgaagctggaattatggctggtgaaacgtgccgccgacatctcatcaaaagacatggaagtctggaaatggttcaggctgtttcctctagggaggagacccttgaagcagcagttcctctccaaatctcaagaatgtgatatatcttctctgaatttgcaagttacatttcaagtaacttatgtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="130460" stop="131667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130760" g_stop="131367" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E277097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130760" e_stop="131367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGT</genome_strand>
        <mrna_strand>CATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255144" ref_strand="+" ref_description="SGN-E255144 [cLEG-31-E19]">
      <seq>tctgagttttttttttttttttttttttttggtttggggcaattaaaaagtctgacatatatatatatagtttgaatatttcagttgcacggagacataatcgttaatttattcatacaagggaatagtacaaactggaacaaactacataagttacttgaaatgtaacttgcaaattcagagaagatatatcacattcttgagatttggagaggaactgctgcttcaagggtctcctccctagaggaaacagcctgaaccatttccagacttccatgtcttttgatgagatgtcggcggcacgtttcaccagccataattccagcttcatacgcaccatgaaccgacccttgatgatcatcactgctcacagcttcccctccaaagaatagattaccaattggtgcccgaagcctatcgtaagcatccgttggttttccaaccaagtcataagaataacatccaagggtgtctggatccgtaccccagtgagatacaagatactgaacaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="131774" stop="130702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131688" g_stop="131650" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.795"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131649" i_stop="131474" i_length="176">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131473" g_stop="130996" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="515" r_length="478" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E255144" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131688" e_stop="131650"/>
          <exon e_start="131473" e_stop="130996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCTTTTTTTTCCTTTTTTCTTCTTTTTGGTTTGTGTAATTTGATTAAGAATCAAACTCAAATGGTAAATAATTTGGGTTTTTAATGTGATTCATTCAAAGGGAAATGCTTGTGCAATGCTTTCCAATACAAATTTCCTATTCAAGGATAATGAAAACATAATAAACAACTAATTGTTCCGACAGAAGAAATAATAAAACTCTCAGACATGGTCAATTAAAAAGTCTGACATATATATATATAGTTTGAATATTTCAGTTGCACGGAGACATAATCGTTAATTTATTCATACAAGGTAATAGTACAAACTGGAACAAACTACATAAGTTACTTGAAATGTAACTTGCAAATTCAGAGAAGATATATCACATTCTTGAGATTTGGAGAGGAACTGCTGCTTCAAGGGTCTCCTCCCTAGAGGAAACAGCCTGAACCATTTCCAGACTTCCATGTCTTTTGATGAGATGTCGGCGGCACGTTTCACCAGCCATAATTCCAGCTTCATACGCACCATGAACCGACCCTTGATGATCATCACTGCTCACAGCTTCCCCTCCAAAGAATAGATTACCAATTGGTGCCCGAAGCCTATCGTAAGCATCCGTTGGTTTTCCAACCAAGTCATAAGAATAACATCCAAGGGTGTCTGGATCCGTACCCCAGTGAGATACAAGATACTGAACCTGTAA</genome_strand>
        <mrna_strand>TCTGAGTTTTTTTTTT-TTTTTT-TTTTTTTTGGTTTGG................................................................................................................................................................................GGCAATTAAAAAGTCTGACATATATATATATAGTTTGAATATTTCAGTTGCACGGAGACATAATCGTTAATTTATTCATACAAGGGAATAGTACAAACTGGAACAAACTACATAAGTTACTTGAAATGTAACTTGCAAATTCAGAGAAGATATATCACATTCTTGAGATTTGGAGAGGAACTGCTGCTTCAAGGGTCTCCTCCCTAGAGGAAACAGCCTGAACCATTTCCAGACTTCCATGTCTTTTGATGAGATGTCGGCGGCACGTTTCACCAGCCATAATTCCAGCTTCATACGCACCATGAACCGACCCTTGATGATCATCACTGCTCACAGCTTCCCCTCCAAAGAATAGATTACCAATTGGTGCCCGAAGCCTATCGTAAGCATCCGTTGGTTTTCCAACCAAGTCATAAGAATAACATCCAAGGGTGTCTGGATCCGTACCCCAGTGAGATACAAGATACTGAACAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272990" ref_strand="+" ref_description="SGN-E272990 [cLEM-25-I18]">
      <seq>gacatatatatatatagtgtgaatatttcagttgcacggagacataatcgttaatttattcatacaaggtaatagtacaaactggaacaaactacataagttacttgaaatgtaacttgcaaattcagagaagatatatcacattcttgagatttggagaggaactgctgcttcaagggtctcctccctaaaggaaacagactgaaccatttccagacttccatgtcttttgatgagatgtcggcggcacgtttcaccagccataatttcagcttcatacgcaccatgaaccgacccttgatgatcatcactgctcacagcttcccctccaaagaatagattaccaattggtgcccgaagcctatcgtaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="-" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="131757" stop="130785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131457" g_stop="131085" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="-" ref_id="SGN-E272990" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131457" e_stop="131085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATATATATATATAGTTTGAATATTTCAGTTGCACGGAGACATAATCGTTAATTTATTCATACAAGGTAATAGTACAAACTGGAACAAACTACATAAGTTACTTGAAATGTAACTTGCAAATTCAGAGAAGATATATCACATTCTTGAGATTTGGAGAGGAACTGCTGCTTCAAGGGTCTCCTCCCTAGAGGAAACAGCCTGAACCATTTCCAGACTTCCATGTCTTTTGATGAGATGTCGGCGGCACGTTTCACCAGCCATAATTCCAGCTTCATACGCACCATGAACCGACCCTTGATGATCATCACTGCTCACAGCTTCCCCTCCAAAGAATAGATTACCAATTGGTGCCCGAAGCCTATCGTAAGCA</genome_strand>
        <mrna_strand>GACATATATATATATAGTGTGAATATTTCAGTTGCACGGAGACATAATCGTTAATTTATTCATACAAGGTAATAGTACAAACTGGAACAAACTACATAAGTTACTTGAAATGTAACTTGCAAATTCAGAGAAGATATATCACATTCTTGAGATTTGGAGAGGAACTGCTGCTTCAAGGGTCTCCTCCCTAAAGGAAACAGACTGAACCATTTCCAGACTTCCATGTCTTTTGATGAGATGTCGGCGGCACGTTTCACCAGCCATAATTTCAGCTTCATACGCACCATGAACCGACCCTTGATGATCATCACTGCTCACAGCTTCCCCTCCAAAGAATAGATTACCAATTGGTGCCCGAAGCCTATCGTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305970" ref_strand="+" ref_description="SGN-E305970 [cLEY-17-D1]">
      <seq>gctgtttcctctagggaggagacccttgaagcagcagttcctctccaaatctcaagaatgtgatatatcttctctgaatttgcaagttacatttcaagtaacttatgtagtttgttccagtttgtactattaccttgtatgaataaattaacgattatgtctccgtgcaactgaaatattcaaactatatatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="130957" stop="131753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131257" g_stop="131461" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E305970" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131257" e_stop="131461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGAC</genome_strand>
        <mrna_strand>GCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326370" ref_strand="+" ref_description="SGN-E326370 [cTOC-14-C5]">
      <seq>acaacagatcccttctccctctctaaattctccatttttcttccttattttttttacaaattttattcatggcatccactgggcacaccaatctgaatgcaaaacttgtattgttaggtgacatgggagctggtaaatcaagcttggttatacgattcataaagggccaattccttgaatttcaagaatcgacgattggggcggctttcttttcgtctacattggcagttaataatgctacggtgaagtttgagatatgggatactgctgggcaggagaggtaccatagcttagcacctatgtattatagaggcgctgcagctgctattattgtctatgatatcactagctcggattcatttgcaaaggcaaagaaatgggtgcaagaattgcagaagcaaggtaattctaacatgatcatggctcttgctggcaataaggcagatctagaagatcgaaggaacgttcctgcagaggaggcacgcttgtatgcagaggaaaatggcctctttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="132161" stop="135443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132461" g_stop="132567" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132568" i_stop="132661" i_length="94">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132662" g_stop="132739" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="185" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132740" i_stop="132860" i_length="121">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132861" g_stop="133028" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="353" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133029" i_stop="133634" i_length="606">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133635" g_stop="133683" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="402" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="133684" i_stop="133953" i_length="270">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.688" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="133954" g_stop="134027" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="476" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="134028" i_stop="135102" i_length="1075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135103" g_stop="135143" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="517" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E326370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132461" e_stop="132567"/>
          <exon e_start="132662" e_stop="132739"/>
          <exon e_start="132861" e_stop="133028"/>
          <exon e_start="133635" e_stop="133683"/>
          <exon e_start="133954" e_stop="134027"/>
          <exon e_start="135103" e_stop="135143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAGATCCCTTCTCCCTCTCTAAATTCTCCATTTTTCTTCCTTATTTTTTTTACAAATTTTATTCATGGCATCCACTGGGCACACCAATCTGAATGCAAAACTTGTAAAGTTTTTTTTTGATCCATGCGTATGAGAATGAATTTGAATTTACAGCTTTAAATCTTTTACCGTAAATTTCTATTTGATTTTTCTTTTAGGTATTGTTAGGTGACATGGGAGCTGGTAAATCAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAAGTATTCTTCTTTCTTTTCATTCGACCTTTCAATTTTGACATTTTTAGGGTTTTGTAATTTTTGAGTTTATGGGTGTTGATTTACAATCCGGTATTCAAAGTTGATTTTGTTGATATTACAGGAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATAGCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCGGTAAGAGACTGTTTAATTGGGAGAATTTGGAATTCAAATGGGTCAATACAAGTGCTTTCGTTGTTGGCCTTCTTAAATTGTTTTACTTGATAAATATATTGGTTGTGCATGTGAAAAGAGATAGGAGTAATGGCTGCTTTACTTCATGCATTTTTAAGGTTGAAAAGAGTAGATTTTGGAGCTAATTACAGGCGGAAAAAAAACTAATGCTGGTCTCCATATGATTTTCTCTGTCAATAAATCAACCCCCTTATGAGGAGGTCGCCTTTTTTTCTCAAATTTGGAAGGTTAAGGTATTAAATGTCCAATTCAGTAGTGTCAAACGAAAAAGTGCACAAAATGCAGTTTATGGTTTTCGAGTATCTCGTATCCTAGAAAATTTTGTTCCTTAGTGGTGGAAGGACTTCTCATGAAATGAAAGAAGCAGTAGATACAGTTTTGGTCTCTATAGAATTGAGATTCAGAGAGAATTCTTGCTTATGTTCACTTTGCCTTTTACTTTACTTATCTTGCTTCGGATTTGAATGATCACAAATCTGTAATATGGATGTCTACATGTCTATGCATCTACATTGAGCTGTTTTCTTTTATTTTCTGCTAATTTAGGATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAGGTGATCATCCCTTTAATCTACTTGCTCTGTATAGATTTAAAAAAAGTGAAAGTTATTATCTTCTTTCTATTTTGAGTAACCCTGACAGCTCCGTTTTATGATGTCTAGAGAACTCTGGAAAAATCATCTTGATGTCTCTTATTTTTTCCTATATGGTTTTCTGCCTAGTGTCAACTTTACTTTTGATGATCCAGATTTTGTTTTGAAATAATCACGACCCTGTTTAGATGGGTTTTCAGGAAAATAAGCAATTTTTTGATAACATGGCAGGTAATTCTAACATGATCATGGCTCTTGCTGGCAATAAGGCAGATCTAGAAGATCGAAGGAACGTTCCTGCAGAGGTGAGTTGTACTTTTTGGTTATCCAATGTTTCATGCCCATCATCCTTTATTGACATTCCTCCTATTGGTCTTTGCCTAGCGTTTTTATATCACAGTTCTTGGATGCAGATTCTGATATATTGTTAGTAGTCTCTGCTTAACAACATATCCAATCTACAAGATTGACATTTGAAAAAAAAAGAGTAGTAATTGGTGCTTATTATTGCTTAAGCTTTCTTAACCAATCATGTATTGGACTAGATTTGAGAGGACCCAAACATTTAGTCACCCTCTAAGATCTTCAGTTCCGAGCACGATATAAAACTAAGGTACTCATTTGGTGGGAATCAATATGAATCAAGTATGTTTCAATCCTAAACAAGTTGGTGTTGTCTATATGAATCCTCTACATCTATTACCGCCTTCAGAGGTTTCATCATAATCAGCCTATTTTTGTATTGGGCGCTAACCAGTACAGCTTTTCTTTATCTCAATTGGGAGTTGACTATGCTTTACTATGTTCTCATAGGCAGAGGTTTTTTGTGGCAGTCACTTTAGGTAAAATTAATTCAATGCAATTAGTACTCGAGGAGAAGCTTTCTGCCTTTTCCAGACTCCATTTATGGGATCACACTGGATATGTTGTTGTTGTTGAGGAGAAGTCTGCTGCCTTCATTTTTTTGAAAATGCTATATTCTAGTTTAGTTTGTTGCAATTATAAGATAGGCCATATGAACTCGTAGGCTCTTAGGTGATACATAATCTCTTCAATTGTGGAACAGGGATGAGTTCTCAATCCATTGCCTAACCTAACGTGCAATTTGCTGTGGTTAAGCATTGTTAGATCTATGTCAATGCTCTTATGGAACCTTGAAAGTTAAAAACAATCTCTTTATTTGAAGAGAATGTGGAAGTCATAAATAGTGAAAATTCTTAGAGAAGATAATTAGAACTCAGTGTTCTTTGTTTCTCTGCTTAATGATTTGTATTTAGTTACCTTATTAGGTTTCTCTCTTATCCAGTAACTGAGGTAGTTCAATCTCTTCATTGTTTTGGTACATCAGTTTTCCTGATAGTATTCTTGGTGATTTTACAGGAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCAT</genome_strand>
        <mrna_strand>ACAACAGATCCCTTCTCCCTCTCTAAATTCTCCATTTTTCTTCCTTATTTTTTTTACAAATTTTATTCATGGCATCCACTGGGCACACCAATCTGAATGCAAAACTT..............................................................................................GTATTGTTAGGTGACATGGGAGCTGGTAAATCAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAA.........................................................................................................................GAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATAGCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAG..............................................................................................................................................................................................................................................................................GTAATTCTAACATGATCATGGCTCTTGCTGGCAATAAGGCAGATCTAGAAGATCGAAGGAACGTTCCTGCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301239" ref_strand="+" ref_description="SGN-E301239 [cLEW-24-K21]">
      <seq>aacagatcccttctacctctctaaattctccatttttcttccttattttttttacaaattttattcatggcatccactgggcacaccaatctgaatgcaaaacttgtattgttaggtgacatgggagctggtaaatcaagcttggttatacgattcataaagggccaattccttgaatttcaagaatcgacgattggggcggctttcttttcgtctacattggcagttaataatgctacggtgaagtttgagatatgggatactgctgggcaggagaggtaccatatcttagcacctatgtattatagaggcgctgcagctgctattattgtctatgatatcactagctcggattcatttgcaaaggcaaagaaatgggtgcaagaattgcagaagcaaggtaattctaacatgatcatggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="132163" stop="134010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132463" g_stop="132567" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132568" i_stop="132661" i_length="94">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132662" g_stop="132739" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="183" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132740" i_stop="132860" i_length="121">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132861" g_stop="133028" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="351" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133029" i_stop="133634" i_length="606">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133635" g_stop="133683" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="400" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="133684" i_stop="133953" i_length="270">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.688" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="133954" g_stop="133977" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="424" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E301239" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132463" e_stop="132567"/>
          <exon e_start="132662" e_stop="132739"/>
          <exon e_start="132861" e_stop="133028"/>
          <exon e_start="133635" e_stop="133683"/>
          <exon e_start="133954" e_stop="133977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATCCCTTCTCCCTCTCTAAATTCTCCATTTTTCTTCCTTATTTTTTTTACAAATTTTATTCATGGCATCCACTGGGCACACCAATCTGAATGCAAAACTTGTAAAGTTTTTTTTTGATCCATGCGTATGAGAATGAATTTGAATTTACAGCTTTAAATCTTTTACCGTAAATTTCTATTTGATTTTTCTTTTAGGTATTGTTAGGTGACATGGGAGCTGGTAAATCAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAAGTATTCTTCTTTCTTTTCATTCGACCTTTCAATTTTGACATTTTTAGGGTTTTGTAATTTTTGAGTTTATGGGTGTTGATTTACAATCCGGTATTCAAAGTTGATTTTGTTGATATTACAGGAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATAGCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCGGTAAGAGACTGTTTAATTGGGAGAATTTGGAATTCAAATGGGTCAATACAAGTGCTTTCGTTGTTGGCCTTCTTAAATTGTTTTACTTGATAAATATATTGGTTGTGCATGTGAAAAGAGATAGGAGTAATGGCTGCTTTACTTCATGCATTTTTAAGGTTGAAAAGAGTAGATTTTGGAGCTAATTACAGGCGGAAAAAAAACTAATGCTGGTCTCCATATGATTTTCTCTGTCAATAAATCAACCCCCTTATGAGGAGGTCGCCTTTTTTTCTCAAATTTGGAAGGTTAAGGTATTAAATGTCCAATTCAGTAGTGTCAAACGAAAAAGTGCACAAAATGCAGTTTATGGTTTTCGAGTATCTCGTATCCTAGAAAATTTTGTTCCTTAGTGGTGGAAGGACTTCTCATGAAATGAAAGAAGCAGTAGATACAGTTTTGGTCTCTATAGAATTGAGATTCAGAGAGAATTCTTGCTTATGTTCACTTTGCCTTTTACTTTACTTATCTTGCTTCGGATTTGAATGATCACAAATCTGTAATATGGATGTCTACATGTCTATGCATCTACATTGAGCTGTTTTCTTTTATTTTCTGCTAATTTAGGATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAGGTGATCATCCCTTTAATCTACTTGCTCTGTATAGATTTAAAAAAAGTGAAAGTTATTATCTTCTTTCTATTTTGAGTAACCCTGACAGCTCCGTTTTATGATGTCTAGAGAACTCTGGAAAAATCATCTTGATGTCTCTTATTTTTTCCTATATGGTTTTCTGCCTAGTGTCAACTTTACTTTTGATGATCCAGATTTTGTTTTGAAATAATCACGACCCTGTTTAGATGGGTTTTCAGGAAAATAAGCAATTTTTTGATAACATGGCAGGTAATTCTAACATGATCATGGCTC</genome_strand>
        <mrna_strand>AACAGATCCCTTCTACCTCTCTAAATTCTCCATTTTTCTTCCTTATTTTTTTTACAAATTTTATTCATGGCATCCACTGGGCACACCAATCTGAATGCAAAACTT..............................................................................................GTATTGTTAGGTGACATGGGAGCTGGTAAATCAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAA.........................................................................................................................GAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATATCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAG..............................................................................................................................................................................................................................................................................GTAATTCTAACATGATCATGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253533" ref_strand="+" ref_description="SGN-E253533 [cLEG-24-M22]">
      <seq>gctaaattctccatttttcttccttattttttttacaaattttattcatggcatccactgggcacaccaatctgaatgcaaaacttgtattgttaggtgacatgggagctggtaaatcaagcttggttatacgattcataaagggccaattccttgaatttcaagaatcgacgattggggcggctttcttttcgtctacattggcagttaataatgctacggtgaagtttgagatatgggatactgctgggcaggagaggtaccatagcttagcacctatgtattatagaggcgctgcagctgctattattgtctatgatatcactagctcggattcatttgcaaaggcaaagaaatgggtgcaagaattgcagaagcaaggtaattctaacatgatcatggctcttgctggcaataaggcagatctagaagatcgaaggaacgttcctgcagaagaggcacgcttgtatgcagaggaaaatggcctctttttcatggagacctctgccaaaactgctgcgaatgtcaatgatattttctatgaaatagctaaacggttgcctacagctcaacccactcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="132183" stop="135499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132482" g_stop="132567" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132568" i_stop="132661" i_length="94">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132662" g_stop="132739" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="164" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132740" i_stop="132860" i_length="121">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132861" g_stop="133028" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="332" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133029" i_stop="133634" i_length="606">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133635" g_stop="133683" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="381" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="133684" i_stop="133953" i_length="270">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.688" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="133954" g_stop="134027" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="455" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="134028" i_stop="135102" i_length="1075">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135103" g_stop="135196" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="549" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E253533" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132482" e_stop="132567"/>
          <exon e_start="132662" e_stop="132739"/>
          <exon e_start="132861" e_stop="133028"/>
          <exon e_start="133635" e_stop="133683"/>
          <exon e_start="133954" e_stop="134027"/>
          <exon e_start="135103" e_stop="135196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATTCTCCATTTTTCTTCCTTATTTTTTTTACAAATTTTATTCATGGCATCCACTGGGCACACCAATCTGAATGCAAAACTTGTAAAGTTTTTTTTTGATCCATGCGTATGAGAATGAATTTGAATTTACAGCTTTAAATCTTTTACCGTAAATTTCTATTTGATTTTTCTTTTAGGTATTGTTAGGTGACATGGGAGCTGGTAAATCAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAAGTATTCTTCTTTCTTTTCATTCGACCTTTCAATTTTGACATTTTTAGGGTTTTGTAATTTTTGAGTTTATGGGTGTTGATTTACAATCCGGTATTCAAAGTTGATTTTGTTGATATTACAGGAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATAGCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCGGTAAGAGACTGTTTAATTGGGAGAATTTGGAATTCAAATGGGTCAATACAAGTGCTTTCGTTGTTGGCCTTCTTAAATTGTTTTACTTGATAAATATATTGGTTGTGCATGTGAAAAGAGATAGGAGTAATGGCTGCTTTACTTCATGCATTTTTAAGGTTGAAAAGAGTAGATTTTGGAGCTAATTACAGGCGGAAAAAAAACTAATGCTGGTCTCCATATGATTTTCTCTGTCAATAAATCAACCCCCTTATGAGGAGGTCGCCTTTTTTTCTCAAATTTGGAAGGTTAAGGTATTAAATGTCCAATTCAGTAGTGTCAAACGAAAAAGTGCACAAAATGCAGTTTATGGTTTTCGAGTATCTCGTATCCTAGAAAATTTTGTTCCTTAGTGGTGGAAGGACTTCTCATGAAATGAAAGAAGCAGTAGATACAGTTTTGGTCTCTATAGAATTGAGATTCAGAGAGAATTCTTGCTTATGTTCACTTTGCCTTTTACTTTACTTATCTTGCTTCGGATTTGAATGATCACAAATCTGTAATATGGATGTCTACATGTCTATGCATCTACATTGAGCTGTTTTCTTTTATTTTCTGCTAATTTAGGATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAGGTGATCATCCCTTTAATCTACTTGCTCTGTATAGATTTAAAAAAAGTGAAAGTTATTATCTTCTTTCTATTTTGAGTAACCCTGACAGCTCCGTTTTATGATGTCTAGAGAACTCTGGAAAAATCATCTTGATGTCTCTTATTTTTTCCTATATGGTTTTCTGCCTAGTGTCAACTTTACTTTTGATGATCCAGATTTTGTTTTGAAATAATCACGACCCTGTTTAGATGGGTTTTCAGGAAAATAAGCAATTTTTTGATAACATGGCAGGTAATTCTAACATGATCATGGCTCTTGCTGGCAATAAGGCAGATCTAGAAGATCGAAGGAACGTTCCTGCAGAGGTGAGTTGTACTTTTTGGTTATCCAATGTTTCATGCCCATCATCCTTTATTGACATTCCTCCTATTGGTCTTTGCCTAGCGTTTTTATATCACAGTTCTTGGATGCAGATTCTGATATATTGTTAGTAGTCTCTGCTTAACAACATATCCAATCTACAAGATTGACATTTGAAAAAAAAAGAGTAGTAATTGGTGCTTATTATTGCTTAAGCTTTCTTAACCAATCATGTATTGGACTAGATTTGAGAGGACCCAAACATTTAGTCACCCTCTAAGATCTTCAGTTCCGAGCACGATATAAAACTAAGGTACTCATTTGGTGGGAATCAATATGAATCAAGTATGTTTCAATCCTAAACAAGTTGGTGTTGTCTATATGAATCCTCTACATCTATTACCGCCTTCAGAGGTTTCATCATAATCAGCCTATTTTTGTATTGGGCGCTAACCAGTACAGCTTTTCTTTATCTCAATTGGGAGTTGACTATGCTTTACTATGTTCTCATAGGCAGAGGTTTTTTGTGGCAGTCACTTTAGGTAAAATTAATTCAATGCAATTAGTACTCGAGGAGAAGCTTTCTGCCTTTTCCAGACTCCATTTATGGGATCACACTGGATATGTTGTTGTTGTTGAGGAGAAGTCTGCTGCCTTCATTTTTTTGAAAATGCTATATTCTAGTTTAGTTTGTTGCAATTATAAGATAGGCCATATGAACTCGTAGGCTCTTAGGTGATACATAATCTCTTCAATTGTGGAACAGGGATGAGTTCTCAATCCATTGCCTAACCTAACGTGCAATTTGCTGTGGTTAAGCATTGTTAGATCTATGTCAATGCTCTTATGGAACCTTGAAAGTTAAAAACAATCTCTTTATTTGAAGAGAATGTGGAAGTCATAAATAGTGAAAATTCTTAGAGAAGATAATTAGAACTCAGTGTTCTTTGTTTCTCTGCTTAATGATTTGTATTTAGTTACCTTATTAGGTTTCTCTCTTATCCAGTAACTGAGGTAGTTCAATCTCTTCATTGTTTTGGTACATCAGTTTTCCTGATAGTATTCTTGGTGATTTTACAGGAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAG</genome_strand>
        <mrna_strand>GCTAAATTCTCCATTTTTCTTCCTTATTTTTTTTACAAATTTTATTCATGGCATCCACTGGGCACACCAATCTGAATGCAAAACTT..............................................................................................GTATTGTTAGGTGACATGGGAGCTGGTAAATCAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAA.........................................................................................................................GAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATAGCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAG..............................................................................................................................................................................................................................................................................GTAATTCTAACATGATCATGGCTCTTGCTGGCAATAAGGCAGATCTAGAAGATCGAAGGAACGTTCCTGCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287473" ref_strand="+" ref_description="SGN-E287473 [cLES-9-M11]">
      <seq>caagcttggttatacgattcataaagggccaattccttgaatttcaagaatcgacgattggggcggctttcttttcgtctacattggcagttaataatgctacggtgaagtttgagatatgggatactgctgggcaggagaggtaccatagcttagcacctatgtattatagaggcgctgcagctgctattattgtctatgatatcactagctcggattcatttgcaaaggcaaagaaatgggtgcaagaattgcagaagcaaggtaattctaacatgatcatggctcttgctggcaataaggcagatctagaagatcgaaggaacgttcctgcagaggaggcacgcttgtatgcagaggaaaatggcctctttttcatggagacctctgccaaaactgctgcgaatgtcaatgatattttctatgaaatagctaaacggttgcctacagctcaacccactcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0165K22-iEFqp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0165K22.1" temp_strand="+" temp_description="C02HBa0165K22.1  AC215406.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0165K22 sequenced_by:kribb upload_account_name:korea">
        <position start="132393" stop="135499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132693" g_stop="132739" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132740" i_stop="132860" i_length="121">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132861" g_stop="133028" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="215" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133029" i_stop="133634" i_length="606">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133635" g_stop="133683" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="264" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133684" i_stop="133953" i_length="270">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.688" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133954" g_stop="134027" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="338" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134028" i_stop="135102" i_length="1075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135103" g_stop="135196" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="432" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0165K22.1" gen_strand="+" ref_id="SGN-E287473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0165K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132693" e_stop="132739"/>
          <exon e_start="132861" e_stop="133028"/>
          <exon e_start="133635" e_stop="133683"/>
          <exon e_start="133954" e_stop="134027"/>
          <exon e_start="135103" e_stop="135196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAAGTATTCTTCTTTCTTTTCATTCGACCTTTCAATTTTGACATTTTTAGGGTTTTGTAATTTTTGAGTTTATGGGTGTTGATTTACAATCCGGTATTCAAAGTTGATTTTGTTGATATTACAGGAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATAGCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCGGTAAGAGACTGTTTAATTGGGAGAATTTGGAATTCAAATGGGTCAATACAAGTGCTTTCGTTGTTGGCCTTCTTAAATTGTTTTACTTGATAAATATATTGGTTGTGCATGTGAAAAGAGATAGGAGTAATGGCTGCTTTACTTCATGCATTTTTAAGGTTGAAAAGAGTAGATTTTGGAGCTAATTACAGGCGGAAAAAAAACTAATGCTGGTCTCCATATGATTTTCTCTGTCAATAAATCAACCCCCTTATGAGGAGGTCGCCTTTTTTTCTCAAATTTGGAAGGTTAAGGTATTAAATGTCCAATTCAGTAGTGTCAAACGAAAAAGTGCACAAAATGCAGTTTATGGTTTTCGAGTATCTCGTATCCTAGAAAATTTTGTTCCTTAGTGGTGGAAGGACTTCTCATGAAATGAAAGAAGCAGTAGATACAGTTTTGGTCTCTATAGAATTGAGATTCAGAGAGAATTCTTGCTTATGTTCACTTTGCCTTTTACTTTACTTATCTTGCTTCGGATTTGAATGATCACAAATCTGTAATATGGATGTCTACATGTCTATGCATCTACATTGAGCTGTTTTCTTTTATTTTCTGCTAATTTAGGATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAGGTGATCATCCCTTTAATCTACTTGCTCTGTATAGATTTAAAAAAAGTGAAAGTTATTATCTTCTTTCTATTTTGAGTAACCCTGACAGCTCCGTTTTATGATGTCTAGAGAACTCTGGAAAAATCATCTTGATGTCTCTTATTTTTTCCTATATGGTTTTCTGCCTAGTGTCAACTTTACTTTTGATGATCCAGATTTTGTTTTGAAATAATCACGACCCTGTTTAGATGGGTTTTCAGGAAAATAAGCAATTTTTTGATAACATGGCAGGTAATTCTAACATGATCATGGCTCTTGCTGGCAATAAGGCAGATCTAGAAGATCGAAGGAACGTTCCTGCAGAGGTGAGTTGTACTTTTTGGTTATCCAATGTTTCATGCCCATCATCCTTTATTGACATTCCTCCTATTGGTCTTTGCCTAGCGTTTTTATATCACAGTTCTTGGATGCAGATTCTGATATATTGTTAGTAGTCTCTGCTTAACAACATATCCAATCTACAAGATTGACATTTGAAAAAAAAAGAGTAGTAATTGGTGCTTATTATTGCTTAAGCTTTCTTAACCAATCATGTATTGGACTAGATTTGAGAGGACCCAAACATTTAGTCACCCTCTAAGATCTTCAGTTCCGAGCACGATATAAAACTAAGGTACTCATTTGGTGGGAATCAATATGAATCAAGTATGTTTCAATCCTAAACAAGTTGGTGTTGTCTATATGAATCCTCTACATCTATTACCGCCTTCAGAGGTTTCATCATAATCAGCCTATTTTTGTATTGGGCGCTAACCAGTACAGCTTTTCTTTATCTCAATTGGGAGTTGACTATGCTTTACTATGTTCTCATAGGCAGAGGTTTTTTGTGGCAGTCACTTTAGGTAAAATTAATTCAATGCAATTAGTACTCGAGGAGAAGCTTTCTGCCTTTTCCAGACTCCATTTATGGGATCACACTGGATATGTTGTTGTTGTTGAGGAGAAGTCTGCTGCCTTCATTTTTTTGAAAATGCTATATTCTAGTTTAGTTTGTTGCAATTATAAGATAGGCCATATGAACTCGTAGGCTCTTAGGTGATACATAATCTCTTCAATTGTGGAACAGGGATGAGTTCTCAATCCATTGCCTAACCTAACGTGCAATTTGCTGTGGTTAAGCATTGTTAGATCTATGTCAATGCTCTTATGGAACCTTGAAAGTTAAAAACAATCTCTTTATTTGAAGAGAATGTGGAAGTCATAAATAGTGAAAATTCTTAGAGAAGATAATTAGAACTCAGTGTTCTTTGTTTCTCTGCTTAATGATTTGTATTTAGTTACCTTATTAGGTTTCTCTCTTATCCAGTAACTGAGGTAGTTCAATCTCTTCATTGTTTTGGTACATCAGTTTTCCTGATAGTATTCTTGGTGATTTTACAGGAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAG</genome_strand>
        <mrna_strand>CAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAA.........................................................................................................................GAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATAGCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAG..............................................................................................................................................................................................................................................................................GTAATTCTAACATGATCATGGCTCTTGCTGGCAATAAGGCAGATCTAGAAGATCGAAGGAACGTTCCTGCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>224</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13432" PGL_stop="11085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13432" e_stop="12794"/>
            <exon e_start="11778" e_stop="11629"/>
            <exon e_start="11522" e_stop="11085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="0.998"/>
          <exon-intron don_prob="0.988" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13432" e_stop="12794" e_length="639"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12793" i_stop="11779" i_length="1015"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11778" e_stop="11629" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.935">
            <gDNA_intron_boundary i_start="11628" i_stop="11523" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11522" e_stop="11085" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13432" stop="12794"/>
              <exon start="11778" stop="11629"/>
              <exon start="11522" stop="11516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13431" stop="12860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13380" stop="12794"/>
              <exon start="11778" stop="11629"/>
              <exon start="11522" stop="11280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13122" stop="12794"/>
              <exon start="11778" stop="11629"/>
              <exon start="11522" stop="11399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13008" stop="12794"/>
              <exon start="11778" stop="11629"/>
              <exon start="11522" stop="11085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCTCTCCATAAAAACATAACAAAAACTAAACAATAATAATGAGTCCTCAATTATTTCTACTCCTCAAAATCACAACCCTAATCTACTTGTCAATCCTTGTACAACCAACCCTAACCTTTGCAAATTGTACATGTGAACCTCAAGACAACAAATATAATCATCAAACTAAACACAAAGCCTTATCCTACAAACTTATAGCCATATCTTCAATCCTTTGTTCAAGTGCACTTGGAGTCATCCTCCCAATCCTCTTAAAAAACTTCAAATCATTGCAAAAAAATGACTATTCACCCCTTCAATTCATGATAAAGGCGTTCGCGGCGGGAGTGATCTTAGCCACAGGGTTTATACACATTCTACCAGATGCATTTGAGAGCTTGACTAGTCCTTGTCTTAGTGAAGATTTGTGGGGGAGTTTTCCATTTGCTGGGTTTGTTGCAATGATGTCTGCTATATTTACTTTGATGATGGAGTCATTTGCAAGTGGCTATCATAGAAGAGCTGAATTGAGAAAAGCTCAGCCAGTCAATATTGGAGATGAACAAGGACAAGATGAGCATATTGATCATGGTCCACAAATTTTGCTAGAAAGATCTGATTCTTCAAGTCTTATGAGACATAGATTAATATCGCAG : GTTTTGGAATTGGGAATTTTGGTTCATTCTGTGATTATTGGGATTTCCCTTGGAACTACAGAAAATCCCAAAACAATTAAACCTCTAATAATAGCTTTGAGTTTTCATCAATTTTTTGAAGGCATGGGACTTGGTGGATGTATTTCCCAG : GCAAAGTATAAGGTTAGAACAATTATAATTATGGTATTGTTCTTTACTGTAACTACTCCAAGTGGAATAGCTATTGGAATGATGATATCAAAAGGTTACAATGAGCAAAGCTCAACAGCACTTATTGTACAGGGAGTTCTTAATTCAGCATCAGCTGGGATTCTTATTTACATGGCACTCGTGGATCTACTTGCAACTGATTTTATGAACCCTAAATTATACACTAGTTTCAAACTCCAAATTGTTGCCAATGTATCACTCATCTTGGGAGCTTGTTGTATGTCATTATTGGCAAAATGGGGTGGCACATAATTTCACTAGATAAATTATGTATATAGTTTTTATTGGGAGAAAATATATACTACCCGTTCTCATTGATTATGATATGAATTCATCAGCTTGTTGAATCTCGAAGGATATGCCGAACTTAGTATATAA</gDNA_template>
            <first_frame> F  L  S  P  *  K  H  N  K  N  *  T  I  I  M  S  P  Q  L  F  L  L  L  K  I  T  T  L  I  Y  L  S  I  L  V  Q  P  T  L  T  F  A  N  C  T  C  E  P  Q  D  N  K  Y  N  H  Q  T  K  H  K  A  L  S  Y  K  L  I  A  I  S  S  I  L  C  S  S  A  L  G  V  I  L  P  I  L  L  K  N  F  K  S  L  Q  K  N  D  Y  S  P  L  Q  F  M  I  K  A  F  A  A  G  V  I  L  A  T  G  F  I  H  I  L  P  D  A  F  E  S  L  T  S  P  C  L  S  E  D  L  W  G  S  F  P  F  A  G  F  V  A  M  M  S  A  I  F  T  L  M  M  E  S  F  A  S  G  Y  H  R  R  A  E  L  R  K  A  Q  P  V  N  I  G  D  E  Q  G  Q  D  E  H  I  D  H  G  P  Q  I  L  L  E  R  S  D  S  S  S  L  M  R  H  R  L  I  S  Q  :  V  L  E  L  G  I  L  V  H  S  V  I  I  G  I  S  L  G  T  T  E  N  P  K  T  I  K  P  L  I  I  A  L  S  F  H  Q  F  F  E  G  M  G  L  G  G  C  I  S  Q  :  A  K  Y  K  V  R  T  I  I  I  M  V  L  F  F  T  V  T  T  P  S  G  I  A  I  G  M  M  I  S  K  G  Y  N  E  Q  S  S  T  A  L  I  V  Q  G  V  L  N  S  A  S  A  G  I  L  I  Y  M  A  L  V  D  L  L  A  T  D  F  M  N  P  K  L  Y  T  S  F  K  L  Q  I  V  A  N  V  S  L  I  L  G  A  C  C  M  S  L  L  A  K  W  G  G  T  *  F  H  *  I  N  Y  V  Y  S  F  Y  W  E  K  I  Y  T  T  R  S  H  *  L  *  Y  E  F  I  S  L  L  N  L  E  G  Y  A  E  L  S  I  * </first_frame>
            <second_frame>  F  S  L  H  K  N  I  T  K  T  K  Q  *  *  *  V  L  N  Y  F  Y  S  S  K  S  Q  P  *  S  T  C  Q  S  L  Y  N  Q  P  *  P  L  Q  I  V  H  V  N  L  K  T  T  N  I  I  I  K  L  N  T  K  P  Y  P  T  N  L  *  P  Y  L  Q  S  F  V  Q  V  H  L  E  S  S  S  Q  S  S  *  K  T  S  N  H  C  K  K  M  T  I  H  P  F  N  S  *  *  R  R  S  R  R  E  *  S  *  P  Q  G  L  Y  T  F  Y  Q  M  H  L  R  A  *  L  V  L  V  L  V  K  I  C  G  G  V  F  H  L  L  G  L  L  Q  *  C  L  L  Y  L  L  *  *  W  S  H  L  Q  V  A  I  I  E  E  L  N  *  E  K  L  S  Q  S  I  L  E  M  N  K  D  K  M  S  I  L  I  M  V  H  K  F  C  *  K  D  L  I  L  Q  V  L  *  D  I  D  *  Y  R  R :   F  W  N  W  E  F  W  F  I  L  *  L  L  G  F  P  L  E  L  Q  K  I  P  K  Q  L  N  L  *  *  *  L  *  V  F  I  N  F  L  K  A  W  D  L  V  D  V  F  P  R :   Q  S  I  R  L  E  Q  L  *  L  W  Y  C  S  L  L  *  L  L  Q  V  E  *  L  L  E  *  *  Y  Q  K  V  T  M  S  K  A  Q  Q  H  L  L  Y  R  E  F  L  I  Q  H  Q  L  G  F  L  F  T  W  H  S  W  I  Y  L  Q  L  I  L  *  T  L  N  Y  T  L  V  S  N  S  K  L  L  P  M  Y  H  S  S  W  E  L  V  V  C  H  Y  W  Q  N  G  V  A  H  N  F  T  R  *  I  M  Y  I  V  F  I  G  R  K  Y  I  L  P  V  L  I  D  Y  D  M  N  S  S  A  C  *  I  S  K  D  M  P  N  L  V  Y   </second_frame>
            <third_frame>   S  L  S  I  K  T  *  Q  K  L  N  N  N  N  E  S  S  I  I  S  T  P  Q  N  H  N  P  N  L  L  V  N  P  C  T  T  N  P  N  L  C  K  L  Y  M  *  T  S  R  Q  Q  I  *  S  S  N  *  T  Q  S  L  I  L  Q  T  Y  S  H  I  F  N  P  L  F  K  C  T  W  S  H  P  P  N  P  L  K  K  L  Q  I  I  A  K  K  *  L  F  T  P  S  I  H  D  K  G  V  R  G  G  S  D  L  S  H  R  V  Y  T  H  S  T  R  C  I  *  E  L  D  *  S  L  S  *  *  R  F  V  G  E  F  S  I  C  W  V  C  C  N  D  V  C  Y  I  Y  F  D  D  G  V  I  C  K  W  L  S  *  K  S  *  I  E  K  S  S  A  S  Q  Y  W  R  *  T  R  T  R  *  A  Y  *  S  W  S  T  N  F  A  R  K  I  *  F  F  K  S  Y  E  T  *  I  N  I  A   : G  F  G  I  G  N  F  G  S  F  C  D  Y  W  D  F  P  W  N  Y  R  K  S  Q  N  N  *  T  S  N  N  S  F  E  F  S  S  I  F  *  R  H  G  T  W  W  M  Y  F  P   : G  K  V  *  G  *  N  N  Y  N  Y  G  I  V  L  Y  C  N  Y  S  K  W  N  S  Y  W  N  D  D  I  K  R  L  Q  *  A  K  L  N  S  T  Y  C  T  G  S  S  *  F  S  I  S  W  D  S  Y  L  H  G  T  R  G  S  T  C  N  *  F  Y  E  P  *  I  I  H  *  F  Q  T  P  N  C  C  Q  C  I  T  H  L  G  S  L  L  Y  V  I  I  G  K  M  G  W  H  I  I  S  L  D  K  L  C  I  *  F  L  L  G  E  N  I  Y  Y  P  F  S  L  I  M  I  *  I  H  Q  L  V  E  S  R  R  I  C  R  T  *  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13399" stop="12794"/>
                    <exon start="11778" stop="11629"/>
                    <exon start="11522" stop="11211"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIIMSPQLFLLLKITTLIYLSILVQPTLTFANCTCEPQDNKYNHQTKHKALSYKLIAISSILCSSALGVILPILLKNFKSLQKNDYSPLQFMIKAFAAGVILATGFIHILPDAFESLTSPCLSEDLWGSFPFAGFVAMMSAIFTLMMESFASGYHRRAELRKAQPVNIGDEQGQDEHIDHGPQILLERSDSSSLMRHRLISQVLELGILVHSVIIGISLGTTENPKTIKPLIIALSFHQFFEGMGLGGCISQAKYKVRTIIIMVLFFTVTTPSGIAIGMMISKGYNEQSSTALIVQGVLNSASAGILIYMALVDLLATDFMNPKLYTSFKLQIVANVSLILGACCMSLLAKWGGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21185" PGL_stop="19720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21185" e_stop="20136"/>
            <exon e_start="20052" e_stop="19720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21185" e_stop="20136" e_length="1050"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20135" i_stop="20053" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="20052" e_stop="19720" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21185" stop="20563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21093" stop="20515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20947" stop="20372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20606" stop="20136"/>
              <exon start="20052" stop="20033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20567" stop="20136"/>
              <exon start="20052" stop="19720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20421" stop="20136"/>
              <exon start="20052" stop="19841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298095" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20289" stop="20136"/>
              <exon start="20052" stop="19760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGCCGATGTTTTGGTGATTACTTCTCCATCAGTGGCACCAGTTGAAGATTGGTCTCGTAGCTTCTTAGTGTGGTTGCTGGATGGTGAGTTTCTGGATACCACAGCTGTTTTTACGGACACAGGAATTGAATTTCTTTGCACCAAGGAAAGTTTCTTCAGGCTTCGTACAATTGGAATTTGTATGACAAAGATTGCAAAGCTAACTGTTTCTGTCCAACTGAAGAAACGAGGAGAACAATGTGTAGATTGGTTAAAAAAGACTTTGAGGCAGGTAAATACTGCGGCGAAGTCTAAACCTAACTGGTGCCCACTTGTTGTTGGCTGCATTTTCGGGGAGTCTGGGGAGATAGAGGTTCTTTCACGTTCCAGAATGTTTGAAGTTGCATATGTAAACAATGCTTTAACCGACCTGCTTGAACAGGGGAATTTTGTAAAAGCAGAAAGGTTTGCAGCTCAACAGTCAACTTTACCTAAGCAATTTCAGATGCTGTCTTTGGGAACACGTGGCAGTGCAAATACTGCAAATGCTGTATCATTTTCTGAGTTAGCCAAAATTAGGTCGATGGATGATAATTCTTATTTGTCAGAAGAATTACTCCGTGATGCAAAAACTCCTACTGACGGTAGAGTAGATAATGGAGGACCAGTTGAGCAAACCAAACCTGAAGAAAACAAGGAGGACAATTCATCAAGAAAACTTGCAGATAAGATGATGTTGCTTGATATAAAGGAGGGTGATGTGGAAACCTCTATCACAGAGGACAGTGCAGAAGAAAATCCATTGTGTATGTTATTTAATGATGAAAATAGTCCCTTGCTGCAAGTGAAGGAGCGTGGAGAGCAATCTGGACCAACTGCAGAAGGAGGAATTGATTACAGTGTCCAGCCAACTGGTGTTATAGATGCTGCATCAGAAAGTTCTTTACCCGATGATAACAATGGCATCTCGAGGAAGGACTCTGTTGGTTCTGATGATGATTGGACATTAGTTGAGATGGAGTGTCAAGGGAAAGAAACAGAAGTAGCCGAGAGAGTCAGCTGGGGAAG : GTGGTTCATGGGTAAAACTGGAAAATCATTTGGTTTTAAAGACGAGGTGACCGATGAAGCACCATCAAAGAGGACCAAGGCTGATCCATGAATACGTATCCGTTTGATTAGCTGCTAGCCAGCAGTAGGTGGTGCACAATAATGCTCTTTATTTTCTAGGTTAATAATTTCTGTTGCTTGTCTTAGAACTTGATAGCTCATCTTTAAATATGGTTCCGTCGTGTTGACTATATGTGCCTGCCTTCTTTAATCTCATGATGTTTATATTTTGCTCACAACAACTTCTGATACATTATTGTCCATCTAACATGTGTTTAAAAGACAATAACTGCC</gDNA_template>
            <first_frame> K  S  R  C  F  G  D  Y  F  S  I  S  G  T  S  *  R  L  V  S  *  L  L  S  V  V  A  G  W  *  V  S  G  Y  H  S  C  F  Y  G  H  R  N  *  I  S  L  H  Q  G  K  F  L  Q  A  S  Y  N  W  N  L  Y  D  K  D  C  K  A  N  C  F  C  P  T  E  E  T  R  R  T  M  C  R  L  V  K  K  D  F  E  A  G  K  Y  C  G  E  V  *  T  *  L  V  P  T  C  C  W  L  H  F  R  G  V  W  G  D  R  G  S  F  T  F  Q  N  V  *  S  C  I  C  K  Q  C  F  N  R  P  A  *  T  G  E  F  C  K  S  R  K  V  C  S  S  T  V  N  F  T  *  A  I  S  D  A  V  F  G  N  T  W  Q  C  K  Y  C  K  C  C  I  I  F  *  V  S  Q  N  *  V  D  G  *  *  F  L  F  V  R  R  I  T  P  *  C  K  N  S  Y  *  R  *  S  R  *  W  R  T  S  *  A  N  Q  T  *  R  K  Q  G  G  Q  F  I  K  K  T  C  R  *  D  D  V  A  *  Y  K  G  G  *  C  G  N  L  Y  H  R  G  Q  C  R  R  K  S  I  V  Y  V  I  *  *  *  K  *  S  L  A  A  S  E  G  A  W  R  A  I  W  T  N  C  R  R  R  N  *  L  Q  C  P  A  N  W  C  Y  R  C  C  I  R  K  F  F  T  R  *  *  Q  W  H  L  E  E  G  L  C  W  F  *  *  *  L  D  I  S  *  D  G  V  S  R  E  R  N  R  S  S  R  E  S  Q  L  G  K  :  V  V  H  G  *  N  W  K  I  I  W  F  *  R  R  G  D  R  *  S  T  I  K  E  D  Q  G  *  S  M  N  T  Y  P  F  D  *  L  L  A  S  S  R  W  C  T  I  M  L  F  I  F  *  V  N  N  F  C  C  L  S  *  N  L  I  A  H  L  *  I  W  F  R  R  V  D  Y  M  C  L  P  S  L  I  S  *  C  L  Y  F  A  H  N  N  F  *  Y  I  I  V  H  L  T  C  V  *  K  T  I  T  A </first_frame>
            <second_frame>  K  A  D  V  L  V  I  T  S  P  S  V  A  P  V  E  D  W  S  R  S  F  L  V  W  L  L  D  G  E  F  L  D  T  T  A  V  F  T  D  T  G  I  E  F  L  C  T  K  E  S  F  F  R  L  R  T  I  G  I  C  M  T  K  I  A  K  L  T  V  S  V  Q  L  K  K  R  G  E  Q  C  V  D  W  L  K  K  T  L  R  Q  V  N  T  A  A  K  S  K  P  N  W  C  P  L  V  V  G  C  I  F  G  E  S  G  E  I  E  V  L  S  R  S  R  M  F  E  V  A  Y  V  N  N  A  L  T  D  L  L  E  Q  G  N  F  V  K  A  E  R  F  A  A  Q  Q  S  T  L  P  K  Q  F  Q  M  L  S  L  G  T  R  G  S  A  N  T  A  N  A  V  S  F  S  E  L  A  K  I  R  S  M  D  D  N  S  Y  L  S  E  E  L  L  R  D  A  K  T  P  T  D  G  R  V  D  N  G  G  P  V  E  Q  T  K  P  E  E  N  K  E  D  N  S  S  R  K  L  A  D  K  M  M  L  L  D  I  K  E  G  D  V  E  T  S  I  T  E  D  S  A  E  E  N  P  L  C  M  L  F  N  D  E  N  S  P  L  L  Q  V  K  E  R  G  E  Q  S  G  P  T  A  E  G  G  I  D  Y  S  V  Q  P  T  G  V  I  D  A  A  S  E  S  S  L  P  D  D  N  N  G  I  S  R  K  D  S  V  G  S  D  D  D  W  T  L  V  E  M  E  C  Q  G  K  E  T  E  V  A  E  R  V  S  W  G  R :   W  F  M  G  K  T  G  K  S  F  G  F  K  D  E  V  T  D  E  A  P  S  K  R  T  K  A  D  P  *  I  R  I  R  L  I  S  C  *  P  A  V  G  G  A  Q  *  C  S  L  F  S  R  L  I  I  S  V  A  C  L  R  T  *  *  L  I  F  K  Y  G  S  V  V  L  T  I  C  A  C  L  L  *  S  H  D  V  Y  I  L  L  T  T  T  S  D  T  L  L  S  I  *  H  V  F  K  R  Q  *  L   </second_frame>
            <third_frame>   K  P  M  F  W  *  L  L  L  H  Q  W  H  Q  L  K  I  G  L  V  A  S  *  C  G  C  W  M  V  S  F  W  I  P  Q  L  F  L  R  T  Q  E  L  N  F  F  A  P  R  K  V  S  S  G  F  V  Q  L  E  F  V  *  Q  R  L  Q  S  *  L  F  L  S  N  *  R  N  E  E  N  N  V  *  I  G  *  K  R  L  *  G  R  *  I  L  R  R  S  L  N  L  T  G  A  H  L  L  L  A  A  F  S  G  S  L  G  R  *  R  F  F  H  V  P  E  C  L  K  L  H  M  *  T  M  L  *  P  T  C  L  N  R  G  I  L  *  K  Q  K  G  L  Q  L  N  S  Q  L  Y  L  S  N  F  R  C  C  L  W  E  H  V  A  V  Q  I  L  Q  M  L  Y  H  F  L  S  *  P  K  L  G  R  W  M  I  I  L  I  C  Q  K  N  Y  S  V  M  Q  K  L  L  L  T  V  E  *  I  M  E  D  Q  L  S  K  P  N  L  K  K  T  R  R  T  I  H  Q  E  N  L  Q  I  R  *  C  C  L  I  *  R  R  V  M  W  K  P  L  S  Q  R  T  V  Q  K  K  I  H  C  V  C  Y  L  M  M  K  I  V  P  C  C  K  *  R  S  V  E  S  N  L  D  Q  L  Q  K  E  E  L  I  T  V  S  S  Q  L  V  L  *  M  L  H  Q  K  V  L  Y  P  M  I  T  M  A  S  R  G  R  T  L  L  V  L  M  M  I  G  H  *  L  R  W  S  V  K  G  K  K  Q  K  *  P  R  E  S  A  G  E   : G  G  S  W  V  K  L  E  N  H  L  V  L  K  T  R  *  P  M  K  H  H  Q  R  G  P  R  L  I  H  E  Y  V  S  V  *  L  A  A  S  Q  Q  *  V  V  H  N  N  A  L  Y  F  L  G  *  *  F  L  L  L  V  L  E  L  D  S  S  S  L  N  M  V  P  S  C  *  L  Y  V  P  A  F  F  N  L  M  M  F  I  F  C  S  Q  Q  L  L  I  H  Y  C  P  S  N  M  C  L  K  D  N  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21184" stop="20136"/>
                    <exon start="20052" stop="19962"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KADVLVITSPSVAPVEDWSRSFLVWLLDGEFLDTTAVFTDTGIEFLCTKESFFRLRTIGICMTKIAKLTVSVQLKKRGEQCVDWLKKTLRQVNTAAKSKPNWCPLVVGCIFGESGEIEVLSRSRMFEVAYVNNALTDLLEQGNFVKAERFAAQQSTLPKQFQMLSLGTRGSANTANAVSFSELAKIRSMDDNSYLSEELLRDAKTPTDGRVDNGGPVEQTKPEENKEDNSSRKLADKMMLLDIKEGDVETSITEDSAEENPLCMLFNDENSPLLQVKERGEQSGPTAEGGIDYSVQPTGVIDAASESSLPDDNNGISRKDSVGSDDDWTLVEMECQGKETEVAERVSWGRWFMGKTGKSFGFKDEVTDEAPSKRTKADP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22653" PGL_stop="21840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22653" e_stop="21840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="22653" e_stop="21840" e_length="814"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22653" stop="21840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22653" stop="21885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22617" stop="22015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22616" stop="22450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22492" stop="21895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATTTTAGCCTTATTATTTGTTAACTTCCAAGTTCCAAGTTGCAGCTTATACAAAGACTCTCTATAATTTGATGATGTCAATCTTCACACAATTTCTATAGAAGACCCAAAAACCTATTCGGTCTCCTTCTTCGTCTTCTTCTTCTCCAACAAAACCATAAAAACCCCATCACCGTGCAATTTTTTCCCAATTCTGAAACAATCAACAACATGAAGAAAGAGCTTTTCGGGAAAAGGCTTACTGCCTTTTACAATAGTTTGATTTTCAACAAGAAAGATTCATGGGGGAACTCTGATGCTGTTGTAATCCATTCACAGCAACAAGAAAATCCGAATTCTCTGTCATCCCAGTTCTATTTATGGCTTATGGGTGAAAAACATGATGATACGACAGTAATCTTTACTCCTATTGGGATATTCTTTTTCTGTACACAGAAAAATTATTCCAAGATTCGATCTTTGAGTTGTTGTGCTACTGTGATGAGTAAACAGCCTGTTTCTGTTCAATTGAAGGCCAAAAACGATGAGGGTTTTGCGTTCATCGACTCCACGATACGTCAAGCCAGGGTAATTCGTAACAGCAAGGGGTTTACTGGTGTTTTTGATGATGATTGTAATTGGCCGTTTGTTGTGGGTTATATAGAAGGTGAGTACCCTAAGTCTAAGTTTTTTTGGAATTGTATGAATGATTTAGAACCCAAAAAGTATAAAGTAATTACTGTGGATTCTGGTATTAATAAGATGATTCATGCTGCTGATAAACCAATTTCTGGACGAGAATTAGAATTTTTGCAATCACTATTTACTACTTT</gDNA_template>
            <first_frame> E  I  L  A  L  L  F  V  N  F  Q  V  P  S  C  S  L  Y  K  D  S  L  *  F  D  D  V  N  L  H  T  I  S  I  E  D  P  K  T  Y  S  V  S  F  F  V  F  F  F  S  N  K  T  I  K  T  P  S  P  C  N  F  F  P  I  L  K  Q  S  T  T  *  R  K  S  F  S  G  K  G  L  L  P  F  T  I  V  *  F  S  T  R  K  I  H  G  G  T  L  M  L  L  *  S  I  H  S  N  K  K  I  R  I  L  C  H  P  S  S  I  Y  G  L  W  V  K  N  M  M  I  R  Q  *  S  L  L  L  L  G  Y  S  F  S  V  H  R  K  I  I  P  R  F  D  L  *  V  V  V  L  L  *  *  V  N  S  L  F  L  F  N  *  R  P  K  T  M  R  V  L  R  S  S  T  P  R  Y  V  K  P  G  *  F  V  T  A  R  G  L  L  V  F  L  M  M  I  V  I  G  R  L  L  W  V  I  *  K  V  S  T  L  S  L  S  F  F  G  I  V  *  M  I  *  N  P  K  S  I  K  *  L  L  W  I  L  V  L  I  R  *  F  M  L  L  I  N  Q  F  L  D  E  N  *  N  F  C  N  H  Y  L  L  L  </first_frame>
            <second_frame>  K  F  *  P  Y  Y  L  L  T  S  K  F  Q  V  A  A  Y  T  K  T  L  Y  N  L  M  M  S  I  F  T  Q  F  L  *  K  T  Q  K  P  I  R  S  P  S  S  S  S  S  S  P  T  K  P  *  K  P  H  H  R  A  I  F  S  Q  F  *  N  N  Q  Q  H  E  E  R  A  F  R  E  K  A  Y  C  L  L  Q  *  F  D  F  Q  Q  E  R  F  M  G  E  L  *  C  C  C  N  P  F  T  A  T  R  K  S  E  F  S  V  I  P  V  L  F  M  A  Y  G  *  K  T  *  *  Y  D  S  N  L  Y  S  Y  W  D  I  L  F  L  Y  T  E  K  L  F  Q  D  S  I  F  E  L  L  C  Y  C  D  E  *  T  A  C  F  C  S  I  E  G  Q  K  R  *  G  F  C  V  H  R  L  H  D  T  S  S  Q  G  N  S  *  Q  Q  G  V  Y  W  C  F  *  *  *  L  *  L  A  V  C  C  G  L  Y  R  R  *  V  P  *  V  *  V  F  L  E  L  Y  E  *  F  R  T  Q  K  V  *  S  N  Y  C  G  F  W  Y  *  *  D  D  S  C  C  *  *  T  N  F  W  T  R  I  R  I  F  A  I  T  I  Y  Y  F </second_frame>
            <third_frame>   N  F  S  L  I  I  C  *  L  P  S  S  K  L  Q  L  I  Q  R  L  S  I  I  *  *  C  Q  S  S  H  N  F  Y  R  R  P  K  N  L  F  G  L  L  L  R  L  L  L  L  Q  Q  N  H  K  N  P  I  T  V  Q  F  F  P  N  S  E  T  I  N  N  M  K  K  E  L  F  G  K  R  L  T  A  F  Y  N  S  L  I  F  N  K  K  D  S  W  G  N  S  D  A  V  V  I  H  S  Q  Q  Q  E  N  P  N  S  L  S  S  Q  F  Y  L  W  L  M  G  E  K  H  D  D  T  T  V  I  F  T  P  I  G  I  F  F  F  C  T  Q  K  N  Y  S  K  I  R  S  L  S  C  C  A  T  V  M  S  K  Q  P  V  S  V  Q  L  K  A  K  N  D  E  G  F  A  F  I  D  S  T  I  R  Q  A  R  V  I  R  N  S  K  G  F  T  G  V  F  D  D  D  C  N  W  P  F  V  V  G  Y  I  E  G  E  Y  P  K  S  K  F  F  W  N  C  M  N  D  L  E  P  K  K  Y  K  V  I  T  V  D  S  G  I  N  K  M  I  H  A  A  D  K  P  I  S  G  R  E  L  E  F  L  Q  S  L  F  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22576" stop="21842"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQSSHNFYRRPKNLFGLLLRLLLLQQNHKNPITVQFFPNSETINNMKKELFGKRLTAFYNSLIFNKKDSWGNSDAVVIHSQQQENPNSLSSQFYLWLMGEKHDDTTVIFTPIGIFFFCTQKNYSKIRSLSCCATVMSKQPVSVQLKAKNDEGFAFIDSTIRQARVIRNSKGFTGVFDDDCNWPFVVGYIEGEYPKSKFFWNCMNDLEPKKYKVITVDSGINKMIHAADKPISGRELEFLQSLFTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28721" PGL_stop="31558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28721" e_stop="28930"/>
            <exon e_start="30584" e_stop="31558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28721" e_stop="28930" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28931" i_stop="30583" i_length="1653"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="30584" e_stop="31558" e_length="975"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28721" stop="28930"/>
              <exon start="30584" stop="30798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28721" stop="28930"/>
              <exon start="30584" stop="30775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28722" stop="28930"/>
              <exon start="30584" stop="30874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28723" stop="28930"/>
              <exon start="30584" stop="31002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28723" stop="28930"/>
              <exon start="30584" stop="30896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28724" stop="28930"/>
              <exon start="30584" stop="30970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28727" stop="28930"/>
              <exon start="30584" stop="30972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28743" stop="28930"/>
              <exon start="30584" stop="30694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28744" stop="28930"/>
              <exon start="30584" stop="30738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28747" stop="28930"/>
              <exon start="30584" stop="30718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28755" stop="28930"/>
              <exon start="30584" stop="30804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28757" stop="28930"/>
              <exon start="30584" stop="31033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28759" stop="28930"/>
              <exon start="30584" stop="31078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28761" stop="28930"/>
              <exon start="30584" stop="30861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28762" stop="28930"/>
              <exon start="30584" stop="30859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28785" stop="28930"/>
              <exon start="30584" stop="31089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28787" stop="28930"/>
              <exon start="30584" stop="31285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28830" stop="28930"/>
              <exon start="30584" stop="31351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30773" stop="31337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30832" stop="31558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31087" stop="31487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31138" stop="31513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31199" stop="31549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31210" stop="31496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAACCAAATCTATAATTCGTAAAGACTAAGCAAAGCGTCACATCCCAAAACTTATTGAGTCATCGGAAAGGGAAGTGATGTCGGAATCAAGCCGGTGGACTATGCCGGAGATGGCCGGAATCCTGTCAAATAAGATCCCTCAAGATGAACTCAAGCCTGGAGATCATATCTATTCATGGAGAAACGCCTATCTCTATGCTCATCACG : GTATATATGTTGGCGATGGTATGGTTATCCATTTTACTCGAGCTGCAGGTCAAGAGATTGGAACTGGAACTGTTTTAGACCGTTTCATATTCAGCTCATCTCCTTCACATCCCTCTGGCTCCCCATGTCCTAGATGTGGTGATCAATCAAGGACTGAAGGTGTTATCTCATCATGCCTCGAGTGTTTTCTTTGTGGGGGTGAGCTGTATCTTTTTAAGTATGGTGTCTCACCAGGGGTTTTTATTGCTAAAACTCGAGGAGGAACATGCACAATTGCCCCTTCTGATCCACCAGAGCATGTCCTGCACCGTGCTAAATTTCTCCTTCAGAATGGTTTTGGGGTTTACAACATTTTCAAGAACAACTGTGAGGATTTCGCGATCTACTGCAAGACTGGTTTGCTAGTCTTTACAAATGTCAGTGTAGGCCGGAGTGGGCAGGCAACATCCTTTTTAGCTGCCACAACTGCCATTGTTTCATCACCACTGCGCTTTCTAACTACAGGTGTTTCTGGTCTGGCTGCTGTTGGTTTTGGTGTTTACTGTGTCAGCCGGTATGTTTCTGATATTGGTGTACGTCGTGATGTCATGAAGATCCCTGTTGAGAGACTTATCCTATGCCCTGGCCCTCTGGAGTCTGAAGCTGCTACTATTACTGATATATCAAAGGACAAGGGCTCGTAATTCTATGTAAGTTGACTGCATGGATCTCATTAAGTAGGTTACTACAACATACAATGTTGTAGGTGTTGATGTTGTCATTGCTTTTGTGACTTAGGTTTGGTTATTATTGAAACAATGGCCATTTAAACTAGGCCTTGTGTGCGTTCTTCCATCAAATGAATGCTTTGATATGTTATTGTAAATTGTTTATAACAATGTTCCATGGTTCATATGGAAGACAAGTGTGTTTTGTGTGTTAACAAGATGGTTAGTCTAAGAATGACAAATTGATTGTTTTTGTGACATAGGTTTG</gDNA_template>
            <first_frame> K  E  P  N  L  *  F  V  K  T  K  Q  S  V  T  S  Q  N  L  L  S  H  R  K  G  K  *  C  R  N  Q  A  G  G  L  C  R  R  W  P  E  S  C  Q  I  R  S  L  K  M  N  S  S  L  E  I  I  S  I  H  G  E  T  P  I  S  M  L  I  T  :  V  Y  M  L  A  M  V  W  L  S  I  L  L  E  L  Q  V  K  R  L  E  L  E  L  F  *  T  V  S  Y  S  A  H  L  L  H  I  P  L  A  P  H  V  L  D  V  V  I  N  Q  G  L  K  V  L  S  H  H  A  S  S  V  F  F  V  G  V  S  C  I  F  L  S  M  V  S  H  Q  G  F  L  L  L  K  L  E  E  E  H  A  Q  L  P  L  L  I  H  Q  S  M  S  C  T  V  L  N  F  S  F  R  M  V  L  G  F  T  T  F  S  R  T  T  V  R  I  S  R  S  T  A  R  L  V  C  *  S  L  Q  M  S  V  *  A  G  V  G  R  Q  H  P  F  *  L  P  Q  L  P  L  F  H  H  H  C  A  F  *  L  Q  V  F  L  V  W  L  L  L  V  L  V  F  T  V  S  A  G  M  F  L  I  L  V  Y  V  V  M  S  *  R  S  L  L  R  D  L  S  Y  A  L  A  L  W  S  L  K  L  L  L  L  L  I  Y  Q  R  T  R  A  R  N  S  M  *  V  D  C  M  D  L  I  K  *  V  T  T  T  Y  N  V  V  G  V  D  V  V  I  A  F  V  T  *  V  W  L  L  L  K  Q  W  P  F  K  L  G  L  V  C  V  L  P  S  N  E  C  F  D  M  L  L  *  I  V  Y  N  N  V  P  W  F  I  W  K  T  S  V  F  C  V  L  T  R  W  L  V  *  E  *  Q  I  D  C  F  C  D  I  G  L </first_frame>
            <second_frame>  K  N  Q  I  Y  N  S  *  R  L  S  K  A  S  H  P  K  T  Y  *  V  I  G  K  G  S  D  V  G  I  K  P  V  D  Y  A  G  D  G  R  N  P  V  K  *  D  P  S  R  *  T  Q  A  W  R  S  Y  L  F  M  E  K  R  L  S  L  C  S  S  R :   Y  I  C  W  R  W  Y  G  Y  P  F  Y  S  S  C  R  S  R  D  W  N  W  N  C  F  R  P  F  H  I  Q  L  I  S  F  T  S  L  W  L  P  M  S  *  M  W  *  S  I  K  D  *  R  C  Y  L  I  M  P  R  V  F  S  L  W  G  *  A  V  S  F  *  V  W  C  L  T  R  G  F  Y  C  *  N  S  R  R  N  M  H  N  C  P  F  *  S  T  R  A  C  P  A  P  C  *  I  S  P  S  E  W  F  W  G  L  Q  H  F  Q  E  Q  L  *  G  F  R  D  L  L  Q  D  W  F  A  S  L  Y  K  C  Q  C  R  P  E  W  A  G  N  I  L  F  S  C  H  N  C  H  C  F  I  T  T  A  L  S  N  Y  R  C  F  W  S  G  C  C  W  F  W  C  L  L  C  Q  P  V  C  F  *  Y  W  C  T  S  *  C  H  E  D  P  C  *  E  T  Y  P  M  P  W  P  S  G  V  *  S  C  Y  Y  Y  *  Y  I  K  G  Q  G  L  V  I  L  C  K  L  T  A  W  I  S  L  S  R  L  L  Q  H  T  M  L  *  V  L  M  L  S  L  L  L  *  L  R  F  G  Y  Y  *  N  N  G  H  L  N  *  A  L  C  A  F  F  H  Q  M  N  A  L  I  C  Y  C  K  L  F  I  T  M  F  H  G  S  Y  G  R  Q  V  C  F  V  C  *  Q  D  G  *  S  K  N  D  K  L  I  V  F  V  T  *  V   </second_frame>
            <third_frame>   R  T  K  S  I  I  R  K  D  *  A  K  R  H  I  P  K  L  I  E  S  S  E  R  E  V  M  S  E  S  S  R  W  T  M  P  E  M  A  G  I  L  S  N  K  I  P  Q  D  E  L  K  P  G  D  H  I  Y  S  W  R  N  A  Y  L  Y  A  H  H   : G  I  Y  V  G  D  G  M  V  I  H  F  T  R  A  A  G  Q  E  I  G  T  G  T  V  L  D  R  F  I  F  S  S  S  P  S  H  P  S  G  S  P  C  P  R  C  G  D  Q  S  R  T  E  G  V  I  S  S  C  L  E  C  F  L  C  G  G  E  L  Y  L  F  K  Y  G  V  S  P  G  V  F  I  A  K  T  R  G  G  T  C  T  I  A  P  S  D  P  P  E  H  V  L  H  R  A  K  F  L  L  Q  N  G  F  G  V  Y  N  I  F  K  N  N  C  E  D  F  A  I  Y  C  K  T  G  L  L  V  F  T  N  V  S  V  G  R  S  G  Q  A  T  S  F  L  A  A  T  T  A  I  V  S  S  P  L  R  F  L  T  T  G  V  S  G  L  A  A  V  G  F  G  V  Y  C  V  S  R  Y  V  S  D  I  G  V  R  R  D  V  M  K  I  P  V  E  R  L  I  L  C  P  G  P  L  E  S  E  A  A  T  I  T  D  I  S  K  D  K  G  S  *  F  Y  V  S  *  L  H  G  S  H  *  V  G  Y  Y  N  I  Q  C  C  R  C  *  C  C  H  C  F  C  D  L  G  L  V  I  I  E  T  M  A  I  *  T  R  P  C  V  R  S  S  I  K  *  M  L  *  Y  V  I  V  N  C  L  *  Q  C  S  M  V  H  M  E  D  K  C  V  L  C  V  N  K  M  V  S  L  R  M  T  N  *  L  F  L  *  H  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28753" stop="28930"/>
                    <exon start="30584" stop="31266"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKRHIPKLIESSEREVMSESSRWTMPEMAGILSNKIPQDELKPGDHIYSWRNAYLYAHHGIYVGDGMVIHFTRAAGQEIGTGTVLDRFIFSSSPSHPSGSPCPRCGDQSRTEGVISSCLECFLCGGELYLFKYGVSPGVFIAKTRGGTCTIAPSDPPEHVLHRAKFLLQNGFGVYNIFKNNCEDFAIYCKTGLLVFTNVSVGRSGQATSFLAATTAIVSSPLRFLTTGVSGLAAVGFGVYCVSRYVSDIGVRRDVMKIPVERLILCPGPLESEAATITDISKDKGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31481" PGL_stop="30743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31481" e_stop="30896"/>
            <exon e_start="30829" e_stop="30743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31481" e_stop="30896" e_length="586"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30895" i_stop="30830" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30829" e_stop="30743" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31481" stop="30896"/>
              <exon start="30829" stop="30743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715562" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATATGAACCATGGAACATTGTTATAAACAATTTACAATAACATATCAAAGCATTCATTTGATGGAAGAACGCACACAAGGCCTAGTTTAAATGGCCATTGTTTCAATAATAACCAAACCTAAGTCACAAAAGCAATGACAACATCAACACCTACAACATTGTATGTTGTAGTAACCTACTTAATGAGATCCATGCAGTCAACTTACATAGAATTACGAGCCCTTGTCCTTTGATATATCAGTAATAGTAGCAGCTTCAGACTCCAGAGGGCCAGGGCATAGGATAAGTCTCTCAACAGGGATCTTCATGACATCACGACGTACACCAATATCAGAAACATACCGGCTGACACAGTAAACACCAAAACCAACAGCAGCCAGACCAGAAACACCTGTAGTTAGAAAGCGCAGTGGTGATGAAACAATGGCAGTTGTGGCAGCTAAAAAGGATGTTGCCTGCCCACTCCGGCCTACACTGACATTTGTAAAGACTAGCAAACCAGTCTTGCAGTAGATCGCGAAATCCTCACAGTTGTTCTTGAAAATGTTGTAAACCCCAAAACCATTCTGAAGGAGAAATTTAG : CAATAAAAACCCCTGGTGAGACACCATACTTAAAAAGATACAGCTCACCCCCACAAAGAAAACACTCGAGGCATGATGAGATAACAC</gDNA_template>
            <first_frame> S  I  *  T  M  E  H  C  Y  K  Q  F  T  I  T  Y  Q  S  I  H  L  M  E  E  R  T  Q  G  L  V  *  M  A  I  V  S  I  I  T  K  P  K  S  Q  K  Q  *  Q  H  Q  H  L  Q  H  C  M  L  *  *  P  T  *  *  D  P  C  S  Q  L  T  *  N  Y  E  P  L  S  F  D  I  S  V  I  V  A  A  S  D  S  R  G  P  G  H  R  I  S  L  S  T  G  I  F  M  T  S  R  R  T  P  I  S  E  T  Y  R  L  T  Q  *  T  P  K  P  T  A  A  R  P  E  T  P  V  V  R  K  R  S  G  D  E  T  M  A  V  V  A  A  K  K  D  V  A  C  P  L  R  P  T  L  T  F  V  K  T  S  K  P  V  L  Q  *  I  A  K  S  S  Q  L  F  L  K  M  L  *  T  P  K  P  F  *  R  R  N  L   : A  I  K  T  P  G  E  T  P  Y  L  K  R  Y  S  S  P  P  Q  R  K  H  S  R  H  D  E  I  T  </first_frame>
            <second_frame>  P  Y  E  P  W  N  I  V  I  N  N  L  Q  *  H  I  K  A  F  I  *  W  K  N  A  H  K  A  *  F  K  W  P  L  F  Q  *  *  P  N  L  S  H  K  S  N  D  N  I  N  T  Y  N  I  V  C  C  S  N  L  L  N  E  I  H  A  V  N  L  H  R  I  T  S  P  C  P  L  I  Y  Q  *  *  *  Q  L  Q  T  P  E  G  Q  G  I  G  *  V  S  Q  Q  G  S  S  *  H  H  D  V  H  Q  Y  Q  K  H  T  G  *  H  S  K  H  Q  N  Q  Q  Q  P  D  Q  K  H  L  *  L  E  S  A  V  V  M  K  Q  W  Q  L  W  Q  L  K  R  M  L  P  A  H  S  G  L  H  *  H  L  *  R  L  A  N  Q  S  C  S  R  S  R  N  P  H  S  C  S  *  K  C  C  K  P  Q  N  H  S  E  G  E  I  *  :  Q  *  K  P  L  V  R  H  H  T  *  K  D  T  A  H  P  H  K  E  N  T  R  G  M  M  R  *  H </second_frame>
            <third_frame>   H  M  N  H  G  T  L  L  *  T  I  Y  N  N  I  S  K  H  S  F  D  G  R  T  H  T  R  P  S  L  N  G  H  C  F  N  N  N  Q  T  *  V  T  K  A  M  T  T  S  T  P  T  T  L  Y  V  V  V  T  Y  L  M  R  S  M  Q  S  T  Y  I  E  L  R  A  L  V  L  *  Y  I  S  N  S  S  S  F  R  L  Q  R  A  R  A  *  D  K  S  L  N  R  D  L  H  D  I  T  T  Y  T  N  I  R  N  I  P  A  D  T  V  N  T  K  T  N  S  S  Q  T  R  N  T  C  S  *  K  A  Q  W  *  *  N  N  G  S  C  G  S  *  K  G  C  C  L  P  T  P  A  Y  T  D  I  C  K  D  *  Q  T  S  L  A  V  D  R  E  I  L  T  V  V  L  E  N  V  V  N  P  K  T  I  L  K  E  K  F  S :   N  K  N  P  W  *  D  T  I  L  K  K  I  Q  L  T  P  T  K  K  T  L  E  A  *  *  D  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0165K22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37953" PGL_stop="38712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37953" e_stop="38712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37953" e_stop="38712" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37953" stop="38470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38128" stop="38712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTATTCTGCCATATCTCTGTTACTTCCGGGTGATCTAAGTTTCTTTAATTGCCACAAGTTTTGCAGCAAATCTGGTATATACGCAACAACTGCTATTGAAGCTAAAATTAAGGTTGTGGCTGCAGTAGACTTGCCTCAGAGAGTTTTGGTTTCGTTATAATTGTCACTAGTGCCCCAAATATGTGTTTGGTGTTTGTATGTGATGAAGATGAGAGGGTGTTACAAAGACAGGCAGCTCCAGGAGCTTGTCCTTACTGCGGAGGGATGGTTCAAGCCGTGGACATGGAGAGTCAGTGGAGATTCTGCTTTGTCCCTTATTATTTCAAGACTAAACGCAGATACTACTGTACCCTTTGCACCAGACGTCTCATCATCCAATAATTTTACCTAATCTTATGATATAGCCTCTTTGTGGTCCTTGAACTTTCTAGAAAACAAAGATGTATGATCTTTTGGCTTTTCAGGTGTAAAGGGTGTGTATGTGTTATTGTTATCTGAGTTTTATATGTTGGTTTACCATTTCTCTTTAATTATTTGTTGGTTATCTATAGATAACTACTCTGTTCTGGTTCCAAAATCATATGGTTAGAAGTTAGAATTACAAAATAAGGAAAAAGGAAAATGTACAAATTTACCTGTGATATTTGGGATTTGTCTTGCATTTTCCCTTTGTTTACCTTTCGGTCCACAAAAGTCCACATTAATGGAAAATTGCTCTGATTTTGCTGATATGAAGGAAGCCACACATGATATTATCT</gDNA_template>
            <first_frame> L  Y  S  A  I  S  L  L  L  P  G  D  L  S  F  F  N  C  H  K  F  C  S  K  S  G  I  Y  A  T  T  A  I  E  A  K  I  K  V  V  A  A  V  D  L  P  Q  R  V  L  V  S  L  *  L  S  L  V  P  Q  I  C  V  W  C  L  Y  V  M  K  M  R  G  C  Y  K  D  R  Q  L  Q  E  L  V  L  T  A  E  G  W  F  K  P  W  T  W  R  V  S  G  D  S  A  L  S  L  I  I  S  R  L  N  A  D  T  T  V  P  F  A  P  D  V  S  S  S  N  N  F  T  *  S  Y  D  I  A  S  L  W  S  L  N  F  L  E  N  K  D  V  *  S  F  G  F  S  G  V  K  G  V  Y  V  L  L  L  S  E  F  Y  M  L  V  Y  H  F  S  L  I  I  C  W  L  S  I  D  N  Y  S  V  L  V  P  K  S  Y  G  *  K  L  E  L  Q  N  K  E  K  G  K  C  T  N  L  P  V  I  F  G  I  C  L  A  F  S  L  C  L  P  F  G  P  Q  K  S  T  L  M  E  N  C  S  D  F  A  D  M  K  E  A  T  H  D  I  I  </first_frame>
            <second_frame>  S  I  L  P  Y  L  C  Y  F  R  V  I  *  V  S  L  I  A  T  S  F  A  A  N  L  V  Y  T  Q  Q  L  L  L  K  L  K  L  R  L  W  L  Q  *  T  C  L  R  E  F  W  F  R  Y  N  C  H  *  C  P  K  Y  V  F  G  V  C  M  *  *  R  *  E  G  V  T  K  T  G  S  S  R  S  L  S  L  L  R  R  D  G  S  S  R  G  H  G  E  S  V  E  I  L  L  C  P  L  L  F  Q  D  *  T  Q  I  L  L  Y  P  L  H  Q  T  S  H  H  P  I  I  L  P  N  L  M  I  *  P  L  C  G  P  *  T  F  *  K  T  K  M  Y  D  L  L  A  F  Q  V  *  R  V  C  M  C  Y  C  Y  L  S  F  I  C  W  F  T  I  S  L  *  L  F  V  G  Y  L  *  I  T  T  L  F  W  F  Q  N  H  M  V  R  S  *  N  Y  K  I  R  K  K  E  N  V  Q  I  Y  L  *  Y  L  G  F  V  L  H  F  P  F  V  Y  L  S  V  H  K  S  P  H  *  W  K  I  A  L  I  L  L  I  *  R  K  P  H  M  I  L  S </second_frame>
            <third_frame>   L  F  C  H  I  S  V  T  S  G  *  S  K  F  L  *  L  P  Q  V  L  Q  Q  I  W  Y  I  R  N  N  C  Y  *  S  *  N  *  G  C  G  C  S  R  L  A  S  E  S  F  G  F  V  I  I  V  T  S  A  P  N  M  C  L  V  F  V  C  D  E  D  E  R  V  L  Q  R  Q  A  A  P  G  A  C  P  Y  C  G  G  M  V  Q  A  V  D  M  E  S  Q  W  R  F  C  F  V  P  Y  Y  F  K  T  K  R  R  Y  Y  C  T  L  C  T  R  R  L  I  I  Q  *  F  Y  L  I  L  *  Y  S  L  F  V  V  L  E  L  S  R  K  Q  R  C  M  I  F  W  L  F  R  C  K  G  C  V  C  V  I  V  I  *  V  L  Y  V  G  L  P  F  L  F  N  Y  L  L  V  I  Y  R  *  L  L  C  S  G  S  K  I  I  W  L  E  V  R  I  T  K  *  G  K  R  K  M  Y  K  F  T  C  D  I  W  D  L  S  C  I  F  P  L  F  T  F  R  S  T  K  V  H  I  N  G  K  L  L  *  F  C  *  Y  E  G  S  H  T  *  Y  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38066" stop="38335"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCGCSRLASESFGFVIIVTSAPNMCLVFVCDEDERVLQRQAAPGACPYCGGMVQAVDMESQWRFCFVPYYFKTKRRYYCTLCTRRLIIQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38115" stop="38345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLVPQICVWCLYVMKMRGCYKDRQLQELVLTAEGWFKPWTWRVSGDSALSLIISRLNADTTVPFAPDVSSSNNFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41721" PGL_stop="39039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41721" e_stop="41070"/>
            <exon e_start="40977" e_stop="40437"/>
            <exon e_start="40336" e_stop="40023"/>
            <exon e_start="39845" e_stop="39605"/>
            <exon e_start="39505" e_stop="39039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.734" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41721" e_stop="41070" e_length="652"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41069" i_stop="40978" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40977" e_stop="40437" e_length="541"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40436" i_stop="40337" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40336" e_stop="40023" e_length="314"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="40022" i_stop="39846" i_length="177"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39845" e_stop="39605" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.734">
            <gDNA_intron_boundary i_start="39604" i_stop="39506" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39505" e_stop="39039" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41721" stop="41070"/>
              <exon start="40977" stop="40926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41719" stop="41070"/>
              <exon start="40977" stop="40437"/>
              <exon start="40336" stop="40023"/>
              <exon start="39845" stop="39605"/>
              <exon start="39505" stop="39039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40326" stop="40023"/>
              <exon start="39845" stop="39752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40199" stop="40023"/>
              <exon start="39845" stop="39605"/>
              <exon start="39505" stop="39419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTGCCTTCAACTTCCCAAACTGCAATTCATAGTTCATAAGCACAAAAAGCCTAAGTAGAGGAAAACAAAATGTCTACTGCTCTTTCTTTGTCTGTCTCTCAGTTCCCCCTATGCAAATCCCAAGACTTCTCCAAGGATGTTTACAATCCTAAAATCTCCAATAAAGAAACCCCATGTCAGAAAACACATTCAGACACCAGAATAAACAGGAGGAAGCTGTTGAGTACTAGTGGTTTGAGCCTTGTAGCAGGGACTTTGTCTAAGCCAGCAAGAGCTGAGACTGAAGCACCAGTTGAGGTAACTTCAAGTAGAATGTCATATTCAAGATTCTTGGATTACTTGAATCAAGGTGCTGTCAAGAAAGTTGATTTCTTTGAGAACAGTGCTGTTGCTGAGATATTGATCAATCCTGCTCTTAACAAAGTCCAGAGAGTTAAAATTCAGTTGCCAGGATTGCCACCAGAATTGGTGAGAAAACTTAAAGACAAGAATGTAGATTTTGCTGCTCATCTACCTGAAAAGAATGTAATTGGACCACTTCTTGATTTGCTTGGGAATTTAGCTTTTCCATTGATATTGCTTGGTTATTTACTGTTGAGAAGCTCTTCAAATACCCCTGGAGGGCCAAACTTGCCTTTTGGATTAGGAAG : GAGCAAAGCCAAATTCCAGATGGAACCAAATACAGGAGTAACATTTGATGATGTGGCTGGAGTTAATGAAGCAAAACAAGATTTTCAAGAGATTGTTGAGTTTTTGAAGACTCCAGAGAAGTTTGCTGCAGTTGGAGCAAAGATACCAAAGGGATTTCTCTTAGTAGGGCCACCAGGGACAGGGAAGACATTGCTGGCTAAGGCGATTGCTGGAGAAGCAGGGGTGCCATTCTTTTCTCTCTCTGGCTCAGAGTTCATTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTTAGGGACTTATTCAACAAGGCGAAACAAAATTCGCCTTGCATAATTTTTATTGATGAAATTGATGCTGTTGGGAGGCAGAGAGGAACTGGTATTGGTGGAGGAAATGATGAAAGAGAGCAGACACTGAACCAACTTCTTACTGAAATGGATGGTTTTACTGGGAACACTGGAGTCATTGTCATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTAGACCTGGAAGGTTTGATAGGCAG : GTAACTGTTGGACTGCCTGATATAAGAGGAAGAGAAGAAATATTGAAAGTTCACAGTAACAACAAGAAGCTTGACAAAGATGTGTCTCTAAGTGTTATTGCAATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGC : GACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAG : ATGGTTACAATGTTTGGGATGTCTGAGATTGGACCATGGGCGTTAACAGATCCAGCAGCACAAAGTGGCGATGTGGTGCTGAGAATGCTAGCGAGGAATCAAATGTCAGAGAAACTAGCAGAAGACATTGATGAATCTGTAAGGCACATAATCGAGAGAGCATATGAAATTGCAAAGAACCACATCAGGAACAACAGGGAGGCAATCGACAAATTAGTGGATGTCCTGCTGGAAAAGGAGACTCTTACAGGAGATGAGTTTAGAGCTATACTCTCAGAATTCACTGATATCCCATTCGTTAACATAAACAGAAAACCAATTAGAGAACTAATTGAGGCCTAGGTGAAATTACTTCCAATGTACAGCTGCAGAAACTAAATACCTTCACAAGATTTTACATGTTTAATGCAGTGCAGAAAGCAAGATCAATGTAATATAAATAGATAATCTTCATCAACTTTGTGTAT</gDNA_template>
            <first_frame> N  C  L  Q  L  P  K  L  Q  F  I  V  H  K  H  K  K  P  K  *  R  K  T  K  C  L  L  L  F  L  C  L  S  L  S  S  P  Y  A  N  P  K  T  S  P  R  M  F  T  I  L  K  S  P  I  K  K  P  H  V  R  K  H  I  Q  T  P  E  *  T  G  G  S  C  *  V  L  V  V  *  A  L  *  Q  G  L  C  L  S  Q  Q  E  L  R  L  K  H  Q  L  R  *  L  Q  V  E  C  H  I  Q  D  S  W  I  T  *  I  K  V  L  S  R  K  L  I  S  L  R  T  V  L  L  L  R  Y  *  S  I  L  L  L  T  K  S  R  E  L  K  F  S  C  Q  D  C  H  Q  N  W  *  E  N  L  K  T  R  M  *  I  L  L  L  I  Y  L  K  R  M  *  L  D  H  F  L  I  C  L  G  I  *  L  F  H  *  Y  C  L  V  I  Y  C  *  E  A  L  Q  I  P  L  E  G  Q  T  C  L  L  D  *  E   : G  A  K  P  N  S  R  W  N  Q  I  Q  E  *  H  L  M  M  W  L  E  L  M  K  Q  N  K  I  F  K  R  L  L  S  F  *  R  L  Q  R  S  L  L  Q  L  E  Q  R  Y  Q  R  D  F  S  *  *  G  H  Q  G  Q  G  R  H  C  W  L  R  R  L  L  E  K  Q  G  C  H  S  F  L  S  L  A  Q  S  S  L  R  C  L  L  V  W  E  L  L  E  L  G  T  Y  S  T  R  R  N  K  I  R  L  A  *  F  L  L  M  K  L  M  L  L  G  G  R  E  E  L  V  L  V  E  E  M  M  K  E  S  R  H  *  T  N  F  L  L  K  W  M  V  L  L  G  T  L  E  S  L  S  L  L  L  L  I  G  L  K  F  L  I  K  L  C  L  D  L  E  G  L  I  G  R :   *  L  L  D  C  L  I  *  E  E  E  K  K  Y  *  K  F  T  V  T  T  R  S  L  T  K  M  C  L  *  V  L  L  Q  *  E  H  Q  D  S  V  V  Q  I  L  Q  T  *  *  M  K  L  P  F  *  L  E  G  E  E  K  I  R  L  P  Q  K  R  *  M  I  P  S  I  E  L  S  L  E  W  K  E  L  P  *  Q  M  E  R  T  R  F  W  *  H  T  M  R  L  D  M  L  S  A   : R  H  *  P  L  A  M  M  Q  Y  R  K  S  H  *  S  Q  E  V  K  L  A  V  L  H  G  S  F  L  V  K  I  Q  P  *  S  L  R  S  N  S  L  L  E  *  W  E  A  *  E  V  E  Q  Q  R  K  *  F  L  V  N  Q  K  S  L  L  V  Q  Q  E  T  C  N  K  *  L  K  *  Q  D  R :   W  L  Q  C  L  G  C  L  R  L  D  H  G  R  *  Q  I  Q  Q  H  K  V  A  M  W  C  *  E  C  *  R  G  I  K  C  Q  R  N  *  Q  K  T  L  M  N  L  *  G  T  *  S  R  E  H  M  K  L  Q  R  T  T  S  G  T  T  G  R  Q  S  T  N  *  W  M  S  C  W  K  R  R  L  L  Q  E  M  S  L  E  L  Y  S  Q  N  S  L  I  S  H  S  L  T  *  T  E  N  Q  L  E  N  *  L  R  P  R  *  N  Y  F  Q  C  T  A  A  E  T  K  Y  L  H  K  I  L  H  V  *  C  S  A  E  S  K  I  N  V  I  *  I  D  N  L  H  Q  L  C  V  </first_frame>
            <second_frame>  T  A  F  N  F  P  N  C  N  S  *  F  I  S  T  K  S  L  S  R  G  K  Q  N  V  Y  C  S  F  F  V  C  L  S  V  P  P  M  Q  I  P  R  L  L  Q  G  C  L  Q  S  *  N  L  Q  *  R  N  P  M  S  E  N  T  F  R  H  Q  N  K  Q  E  E  A  V  E  Y  *  W  F  E  P  C  S  R  D  F  V  *  A  S  K  S  *  D  *  S  T  S  *  G  N  F  K  *  N  V  I  F  K  I  L  G  L  L  E  S  R  C  C  Q  E  S  *  F  L  *  E  Q  C  C  C  *  D  I  D  Q  S  C  S  *  Q  S  P  E  S  *  N  S  V  A  R  I  A  T  R  I  G  E  K  T  *  R  Q  E  C  R  F  C  C  S  S  T  *  K  E  C  N  W  T  T  S  *  F  A  W  E  F  S  F  S  I  D  I  A  W  L  F  T  V  E  K  L  F  K  Y  P  W  R  A  K  L  A  F  W  I  R  K  :  E  Q  S  Q  I  P  D  G  T  K  Y  R  S  N  I  *  *  C  G  W  S  *  *  S  K  T  R  F  S  R  D  C  *  V  F  E  D  S  R  E  V  C  C  S  W  S  K  D  T  K  G  I  S  L  S  R  A  T  R  D  R  E  D  I  A  G  *  G  D  C  W  R  S  R  G  A  I  L  F  S  L  W  L  R  V  H  *  D  V  C  W  C  G  S  F  *  S  *  G  L  I  Q  Q  G  E  T  K  F  A  L  H  N  F  Y  *  *  N  *  C  C  W  E  A  E  R  N  W  Y  W  W  R  K  *  *  K  R  A  D  T  E  P  T  S  Y  *  N  G  W  F  Y  W  E  H  W  S  H  C  H  C  C  Y  *  *  A  *  N  S  *  S  S  F  A  *  T  W  K  V  *  *  A   : G  N  C  W  T  A  *  Y  K  R  K  R  R  N  I  E  S  S  Q  *  Q  Q  E  A  *  Q  R  C  V  S  K  C  Y  C  N  E  N  T  R  I  Q  W  C  R  S  C  K  P  D  E  *  S  C  H  S  S  W  K  E  R  K  R  *  D  Y  L  K  R  D  R  *  F  H  R  *  N  C  R  W  N  G  R  N  Y  H  D  R  W  K  E  Q  D  S  G  S  I  P  *  G  W  T  C  C  L  R  :  D  I  D  P  W  P  *  C  S  T  E  S  H  I  D  P  K  R  S  S  S  R  S  Y  M  V  H  S  W  *  R  S  N  L  N  L  *  E  A  T  L  C  *  N  S  G  R  L  R  R  *  S  S  R  G  N  N  F  W  *  T  R  N  H  Y  W  C  S  R  R  L  A  T  N  N  S  N  S  K  T   : D  G  Y  N  V  W  D  V  *  D  W  T  M  G  V  N  R  S  S  S  T  K  W  R  C  G  A  E  N  A  S  E  E  S  N  V  R  E  T  S  R  R  H  *  *  I  C  K  A  H  N  R  E  S  I  *  N  C  K  E  P  H  Q  E  Q  Q  G  G  N  R  Q  I  S  G  C  P  A  G  K  G  D  S  Y  R  R  *  V  *  S  Y  T  L  R  I  H  *  Y  P  I  R  *  H  K  Q  K  T  N  *  R  T  N  *  G  L  G  E  I  T  S  N  V  Q  L  Q  K  L  N  T  F  T  R  F  Y  M  F  N  A  V  Q  K  A  R  S  M  *  Y  K  *  I  I  F  I  N  F  V  Y </second_frame>
            <third_frame>   L  P  S  T  S  Q  T  A  I  H  S  S  *  A  Q  K  A  *  V  E  E  N  K  M  S  T  A  L  S  L  S  V  S  Q  F  P  L  C  K  S  Q  D  F  S  K  D  V  Y  N  P  K  I  S  N  K  E  T  P  C  Q  K  T  H  S  D  T  R  I  N  R  R  K  L  L  S  T  S  G  L  S  L  V  A  G  T  L  S  K  P  A  R  A  E  T  E  A  P  V  E  V  T  S  S  R  M  S  Y  S  R  F  L  D  Y  L  N  Q  G  A  V  K  K  V  D  F  F  E  N  S  A  V  A  E  I  L  I  N  P  A  L  N  K  V  Q  R  V  K  I  Q  L  P  G  L  P  P  E  L  V  R  K  L  K  D  K  N  V  D  F  A  A  H  L  P  E  K  N  V  I  G  P  L  L  D  L  L  G  N  L  A  F  P  L  I  L  L  G  Y  L  L  L  R  S  S  S  N  T  P  G  G  P  N  L  P  F  G  L  G  R :   S  K  A  K  F  Q  M  E  P  N  T  G  V  T  F  D  D  V  A  G  V  N  E  A  K  Q  D  F  Q  E  I  V  E  F  L  K  T  P  E  K  F  A  A  V  G  A  K  I  P  K  G  F  L  L  V  G  P  P  G  T  G  K  T  L  L  A  K  A  I  A  G  E  A  G  V  P  F  F  S  L  S  G  S  E  F  I  E  M  F  V  G  V  G  A  S  R  V  R  D  L  F  N  K  A  K  Q  N  S  P  C  I  I  F  I  D  E  I  D  A  V  G  R  Q  R  G  T  G  I  G  G  G  N  D  E  R  E  Q  T  L  N  Q  L  L  T  E  M  D  G  F  T  G  N  T  G  V  I  V  I  A  A  T  N  R  P  E  I  L  D  Q  A  L  L  R  P  G  R  F  D  R  Q  :  V  T  V  G  L  P  D  I  R  G  R  E  E  I  L  K  V  H  S  N  N  K  K  L  D  K  D  V  S  L  S  V  I  A  M  R  T  P  G  F  S  G  A  D  L  A  N  L  M  N  E  A  A  I  L  A  G  R  R  G  K  D  K  I  T  S  K  E  I  D  D  S  I  D  R  I  V  A  G  M  E  G  T  T  M  T  D  G  K  N  K  I  L  V  A  Y  H  E  V  G  H  A  V  C  A :   T  L  T  P  G  H  D  A  V  Q  K  V  T  L  I  P  R  G  Q  A  R  G  L  T  W  F  I  P  G  E  D  P  T  L  I  S  K  K  Q  L  F  A  R  I  V  G  G  L  G  G  R  A  A  E  E  I  I  F  G  E  P  E  I  T  T  G  A  A  G  D  L  Q  Q  I  T  Q  I  A  R  Q  :  M  V  T  M  F  G  M  S  E  I  G  P  W  A  L  T  D  P  A  A  Q  S  G  D  V  V  L  R  M  L  A  R  N  Q  M  S  E  K  L  A  E  D  I  D  E  S  V  R  H  I  I  E  R  A  Y  E  I  A  K  N  H  I  R  N  N  R  E  A  I  D  K  L  V  D  V  L  L  E  K  E  T  L  T  G  D  E  F  R  A  I  L  S  E  F  T  D  I  P  F  V  N  I  N  R  K  P  I  R  E  L  I  E  A  *  V  K  L  L  P  M  Y  S  C  R  N  *  I  P  S  Q  D  F  T  C  L  M  Q  C  R  K  Q  D  Q  C  N  I  N  R  *  S  S  S  T  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41665" stop="41070"/>
                    <exon start="40977" stop="40437"/>
                    <exon start="40336" stop="40023"/>
                    <exon start="39845" stop="39605"/>
                    <exon start="39505" stop="39164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2031</number_coding_nucleotides>
                  <number_encoded_amino_acids>677</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEENKMSTALSLSVSQFPLCKSQDFSKDVYNPKISNKETPCQKTHSDTRINRRKLLSTSGLSLVAGTLSKPARAETEAPVEVTSSRMSYSRFLDYLNQGAVKKVDFFENSAVAEILINPALNKVQRVKIQLPGLPPELVRKLKDKNVDFAAHLPEKNVIGPLLDLLGNLAFPLILLGYLLLRSSSNTPGGPNLPFGLGRSKAKFQMEPNTGVTFDDVAGVNEAKQDFQEIVEFLKTPEKFAAVGAKIPKGFLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKQNSPCIIFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNTGVIVIAATNRPEILDQALLRPGRFDRQVTVGLPDIRGREEILKVHSNNKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITSKEIDDSIDRIVAGMEGTTMTDGKNKILVAYHEVGHAVCATLTPGHDAVQKVTLIPRGQARGLTWFIPGEDPTLISKKQLFARIVGGLGGRAAEEIIFGEPEITTGAAGDLQQITQIARQMVTMFGMSEIGPWALTDPAAQSGDVVLRMLARNQMSEKLAEDIDESVRHIIERAYEIAKNHIRNNREAIDKLVDVLLEKETLTGDEFRAILSEFTDIPFVNINRKPIRELIEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40329" e_stop="40023"/>
            <exon e_start="39845" e_stop="39049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40329" e_stop="40023" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="40022" i_stop="39846" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="39845" e_stop="39049" e_length="797"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40329" stop="40023"/>
              <exon start="39845" stop="39481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40326" stop="40023"/>
              <exon start="39845" stop="39752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39732" stop="39049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGACTGCCTGATATAAGAGGAAGAGAAGAAATATTGAAAGTTCACAGTAACAACAAGAAGCTTGACAAAGATGTGTCTCTAAGTGTTATTGCAATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTCAAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATGAGGTTGGACATGCTGTCTGCGC : GACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACATGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTCTTGTTGCACCTACTAAAGAAAACAACATAGTCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTACAATGTTTGGGATGTCTGAGATTGGACCATGGGCGTTAACAGATCCAGCAGCACAAAGTGGCGATGTGGTGCTGAGAATGCTAGCGAGGAATCAAATGTCAGAGAAACTAGCAGAAGACATTGATGAATCTGTAAGGCACATAATCGAGAGAGCATATGAAATTGCAAAGAACCACATCAGGAACAACAGGGAGGCAATCGACAAATTAGTGGATGTCCTGCTGGAAAAGGAGACTCTTACAGGAGATGAGTTTAGAGCTATACTCTCAGAATTCACTGATATCCCATTCGTTAACATAAACAGAAAACCAATTAGAGAACTAATTGAGGCCTAGGTGAAATTACTTCCAATGTACAGCTGCAGAAACTAAATACCTTCACAAGATTTTACATGTTTAATGCAGTGCAGAAAGCAAGATCAATGTAATATAAATAGATAATCTTCATCAA</gDNA_template>
            <first_frame> L  D  C  L  I  *  E  E  E  K  K  Y  *  K  F  T  V  T  T  R  S  L  T  K  M  C  L  *  V  L  L  Q  *  E  H  Q  D  S  V  V  Q  I  L  Q  T  *  *  M  K  L  P  F  *  L  E  G  E  E  K  I  R  L  P  Q  K  R  *  M  I  P  S  I  E  L  S  L  E  W  K  E  L  P  *  Q  M  E  R  T  R  F  W  *  H  T  M  R  L  D  M  L  S  A   : R  H  *  P  L  A  M  M  Q  Y  R  K  S  H  *  S  Q  E  V  K  L  A  V  L  H  G  S  F  L  V  K  I  Q  P  *  S  L  R  S  N  S  L  L  E  *  W  E  A  *  E  V  E  Q  Q  R  K  *  F  L  V  N  Q  K  S  L  L  V  Q  Q  E  T  C  N  K  *  L  K  *  Q  D  R  Y  S  L  K  H  I  F  L  L  H  L  L  K  K  T  T  *  S  N  T  H  K  F  S  L  V  N  I  R  N  L  S  R  W  L  Q  C  L  G  C  L  R  L  D  H  G  R  *  Q  I  Q  Q  H  K  V  A  M  W  C  *  E  C  *  R  G  I  K  C  Q  R  N  *  Q  K  T  L  M  N  L  *  G  T  *  S  R  E  H  M  K  L  Q  R  T  T  S  G  T  T  G  R  Q  S  T  N  *  W  M  S  C  W  K  R  R  L  L  Q  E  M  S  L  E  L  Y  S  Q  N  S  L  I  S  H  S  L  T  *  T  E  N  Q  L  E  N  *  L  R  P  R  *  N  Y  F  Q  C  T  A  A  E  T  K  Y  L  H  K  I  L  H  V  *  C  S  A  E  S  K  I  N  V  I  *  I  D  N  L  H  Q </first_frame>
            <second_frame>  W  T  A  *  Y  K  R  K  R  R  N  I  E  S  S  Q  *  Q  Q  E  A  *  Q  R  C  V  S  K  C  Y  C  N  E  N  T  R  I  Q  W  C  R  S  C  K  P  D  E  *  S  C  H  S  S  W  K  E  R  K  R  *  D  Y  L  K  R  D  R  *  F  H  R  *  N  C  R  W  N  G  R  N  Y  H  D  R  W  K  E  Q  D  S  G  S  I  P  *  G  W  T  C  C  L  R  :  D  I  D  P  W  P  *  C  S  T  E  S  H  I  D  P  K  R  S  S  S  R  S  Y  M  V  H  S  W  *  R  S  N  L  N  L  *  E  A  T  L  C  *  N  S  G  R  L  R  R  *  S  S  R  G  N  N  F  W  *  T  R  N  H  Y  W  C  S  R  R  L  A  T  N  N  S  N  S  K  T  G  I  H  S  S  T  F  S  C  C  T  Y  *  R  K  Q  H  S  R  I  L  T  S  F  H  L  S  I  F  A  T  *  A  D  G  Y  N  V  W  D  V  *  D  W  T  M  G  V  N  R  S  S  S  T  K  W  R  C  G  A  E  N  A  S  E  E  S  N  V  R  E  T  S  R  R  H  *  *  I  C  K  A  H  N  R  E  S  I  *  N  C  K  E  P  H  Q  E  Q  Q  G  G  N  R  Q  I  S  G  C  P  A  G  K  G  D  S  Y  R  R  *  V  *  S  Y  T  L  R  I  H  *  Y  P  I  R  *  H  K  Q  K  T  N  *  R  T  N  *  G  L  G  E  I  T  S  N  V  Q  L  Q  K  L  N  T  F  T  R  F  Y  M  F  N  A  V  Q  K  A  R  S  M  *  Y  K  *  I  I  F  I   </second_frame>
            <third_frame>   G  L  P  D  I  R  G  R  E  E  I  L  K  V  H  S  N  N  K  K  L  D  K  D  V  S  L  S  V  I  A  M  R  T  P  G  F  S  G  A  D  L  A  N  L  M  N  E  A  A  I  L  A  G  R  R  G  K  D  K  I  T  S  K  E  I  D  D  S  I  D  R  I  V  A  G  M  E  G  T  T  M  T  D  G  K  N  K  I  L  V  A  Y  H  E  V  G  H  A  V  C  A :   T  L  T  P  G  H  D  A  V  Q  K  V  T  L  I  P  R  G  Q  A  R  G  L  T  W  F  I  P  G  E  D  P  T  L  I  S  K  K  Q  L  F  A  R  I  V  G  G  L  G  G  R  A  A  E  E  I  I  F  G  E  P  E  I  T  T  G  A  A  G  D  L  Q  Q  I  T  Q  I  A  R  Q  V  F  T  Q  A  H  F  L  V  A  P  T  K  E  N  N  I  V  E  Y  S  Q  V  F  T  C  Q  Y  S  Q  P  E  Q  M  V  T  M  F  G  M  S  E  I  G  P  W  A  L  T  D  P  A  A  Q  S  G  D  V  V  L  R  M  L  A  R  N  Q  M  S  E  K  L  A  E  D  I  D  E  S  V  R  H  I  I  E  R  A  Y  E  I  A  K  N  H  I  R  N  N  R  E  A  I  D  K  L  V  D  V  L  L  E  K  E  T  L  T  G  D  E  F  R  A  I  L  S  E  F  T  D  I  P  F  V  N  I  N  R  K  P  I  R  E  L  I  E  A  *  V  K  L  L  P  M  Y  S  C  R  N  *  I  P  S  Q  D  F  T  C  L  M  Q  C  R  K  Q  D  Q  C  N  I  N  R  *  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40327" stop="40023"/>
                    <exon start="39845" stop="39164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLPDIRGREEILKVHSNNKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITSKEIDDSIDRIVAGMEGTTMTDGKNKILVAYHEVGHAVCATLTPGHDAVQKVTLIPRGQARGLTWFIPGEDPTLISKKQLFARIVGGLGGRAAEEIIFGEPEITTGAAGDLQQITQIARQVFTQAHFLVAPTKENNIVEYSQVFTCQYSQPEQMVTMFGMSEIGPWALTDPAAQSGDVVLRMLARNQMSEKLAEDIDESVRHIIERAYEIAKNHIRNNREAIDKLVDVLLEKETLTGDEFRAILSEFTDIPFVNINRKPIRELIEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47180" PGL_stop="46662"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47180" e_stop="46662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="47180" e_stop="46662" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47180" stop="46662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTAAACCATAAACCACCCACCACCGTCTTCCTCCGCCGGAAAACCACCTCAGCTGAATACGTAGCCTCAAGAAACCGAGACCCCACTTTCGAAAAACTCATGGACAAGTACAAAAACCTCTTCAAAGTAATCGCAATACAAGACCTCATCCTCGGTACAACCACCAACGCCGCCGCACCTCCCGCCGTCTCCCTCGATTTCCTCAACCGCCTATCCCAGCGCCTCCATCTCAACCGCGGCGCCACCCATTTCCTCCGTAAGTACCCTCACATCTTCAACATTTTCCACCACCCTATCAAATTACAACCTTATTGTACACTGACGGAAACCGCCCTCAAAATCACCCAACACGAAGCTACAGCTATCAATGCTACTTTACCACTTGTAGTAACCCGTTTGGTTCGTTTATTGTCGATGTCAGTGACTAAATCATTGCCCCTTAGAGCCATTTTCAAGGTTTTTAGGGAACTTGGGTTGCCTGATGACTTTGAGGAAAGTGTAATCTTGAAAAAATCTG</gDNA_template>
            <first_frame> N  *  T  I  N  H  P  P  P  S  S  S  A  G  K  P  P  Q  L  N  T  *  P  Q  E  T  E  T  P  L  S  K  N  S  W  T  S  T  K  T  S  S  K  *  S  Q  Y  K  T  S  S  S  V  Q  P  P  T  P  P  H  L  P  P  S  P  S  I  S  S  T  A  Y  P  S  A  S  I  S  T  A  A  P  P  I  S  S  V  S  T  L  T  S  S  T  F  S  T  T  L  S  N  Y  N  L  I  V  H  *  R  K  P  P  S  K  S  P  N  T  K  L  Q  L  S  M  L  L  Y  H  L  *  *  P  V  W  F  V  Y  C  R  C  Q  *  L  N  H  C  P  L  E  P  F  S  R  F  L  G  N  L  G  C  L  M  T  L  R  K  V  *  S  *  K  N  L </first_frame>
            <second_frame>  T  K  P  *  T  T  H  H  R  L  P  P  P  E  N  H  L  S  *  I  R  S  L  K  K  P  R  P  H  F  R  K  T  H  G  Q  V  Q  K  P  L  Q  S  N  R  N  T  R  P  H  P  R  Y  N  H  Q  R  R  R  T  S  R  R  L  P  R  F  P  Q  P  P  I  P  A  P  P  S  Q  P  R  R  H  P  F  P  P  *  V  P  S  H  L  Q  H  F  P  P  P  Y  Q  I  T  T  L  L  Y  T  D  G  N  R  P  Q  N  H  P  T  R  S  Y  S  Y  Q  C  Y  F  T  T  C  S  N  P  F  G  S  F  I  V  D  V  S  D  *  I  I  A  P  *  S  H  F  Q  G  F  *  G  T  W  V  A  *  *  L  *  G  K  C  N  L  E  K  I   </second_frame>
            <third_frame>   L  N  H  K  P  P  T  T  V  F  L  R  R  K  T  T  S  A  E  Y  V  A  S  R  N  R  D  P  T  F  E  K  L  M  D  K  Y  K  N  L  F  K  V  I  A  I  Q  D  L  I  L  G  T  T  T  N  A  A  A  P  P  A  V  S  L  D  F  L  N  R  L  S  Q  R  L  H  L  N  R  G  A  T  H  F  L  R  K  Y  P  H  I  F  N  I  F  H  H  P  I  K  L  Q  P  Y  C  T  L  T  E  T  A  L  K  I  T  Q  H  E  A  T  A  I  N  A  T  L  P  L  V  V  T  R  L  V  R  L  L  S  M  S  V  T  K  S  L  P  L  R  A  I  F  K  V  F  R  E  L  G  L  P  D  D  F  E  E  S  V  I  L  K  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47178" stop="46663"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNHKPPTTVFLRRKTTSAEYVASRNRDPTFEKLMDKYKNLFKVIAIQDLILGTTTNAAAPPAVSLDFLNRLSQRLHLNRGATHFLRKYPHIFNIFHHPIKLQPYCTLTETALKITQHEATAINATLPLVVTRLVRLLSMSVTKSLPLRAIFKVFRELGLPDDFEESVILKKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49523" PGL_stop="62147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49523" e_stop="49701"/>
            <exon e_start="50876" e_stop="50929"/>
            <exon e_start="51514" e_stop="51775"/>
            <exon e_start="51885" e_stop="51973"/>
            <exon e_start="52628" e_stop="52758"/>
            <exon e_start="53874" e_stop="53920"/>
            <exon e_start="54021" e_stop="54129"/>
            <exon e_start="54258" e_stop="54326"/>
            <exon e_start="55140" e_stop="55308"/>
            <exon e_start="56501" e_stop="57006"/>
            <exon e_start="57548" e_stop="57609"/>
            <exon e_start="57693" e_stop="57795"/>
            <exon e_start="57882" e_stop="57939"/>
            <exon e_start="61813" e_stop="62091"/>
            <exon e_start="62143" e_stop="62147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.974" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.320" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.396" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.627" e_score="0.990"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="49523" e_stop="49701" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.974">
            <gDNA_intron_boundary i_start="49702" i_stop="50875" i_length="1174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50876" e_stop="50929" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50930" i_stop="51513" i_length="584"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51514" e_stop="51775" e_length="262"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.320">
            <gDNA_intron_boundary i_start="51776" i_stop="51884" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51885" e_stop="51973" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51974" i_stop="52627" i_length="654"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52628" e_stop="52758" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.987">
            <gDNA_intron_boundary i_start="52759" i_stop="53873" i_length="1115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53874" e_stop="53920" e_length="47"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.396">
            <gDNA_intron_boundary i_start="53921" i_stop="54020" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54021" e_stop="54129" e_length="109"/>
          </exon>
          <intron i_serial="7" don_prob="0.709" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54130" i_stop="54257" i_length="128"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54258" e_stop="54326" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.914" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54327" i_stop="55139" i_length="813"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55140" e_stop="55308" e_length="169"/>
          </exon>
          <intron i_serial="9" don_prob="0.952" acc_prob="0.994">
            <gDNA_intron_boundary i_start="55309" i_stop="56500" i_length="1192"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="56501" e_stop="57006" e_length="506"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57007" i_stop="57547" i_length="541"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="57548" e_stop="57609" e_length="62"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="57610" i_stop="57692" i_length="83"/>
          </intron>
          <exon e_serial="12" e_score="0.990">
            <gDNA_exon_boundary e_start="57693" e_stop="57795" e_length="103"/>
          </exon>
          <intron i_serial="12" don_prob="0.754" acc_prob="0.627">
            <gDNA_intron_boundary i_start="57796" i_stop="57881" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="57882" e_stop="57939" e_length="58"/>
          </exon>
          <intron i_serial="13" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="57940" i_stop="61812" i_length="3873"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="61813" e_stop="62091" e_length="279"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="62092" i_stop="62142" i_length="51"/>
          </intron>
          <exon e_serial="15" e_score="0.600">
            <gDNA_exon_boundary e_start="62143" e_stop="62147" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49523" stop="49701"/>
              <exon start="50876" stop="50929"/>
              <exon start="51514" stop="51775"/>
              <exon start="51885" stop="51973"/>
              <exon start="52628" stop="52758"/>
              <exon start="53874" stop="53920"/>
              <exon start="54021" stop="54129"/>
              <exon start="54258" stop="54326"/>
              <exon start="55140" stop="55308"/>
              <exon start="56501" stop="57006"/>
              <exon start="57548" stop="57609"/>
              <exon start="57693" stop="57795"/>
              <exon start="57882" stop="57939"/>
              <exon start="61813" stop="62091"/>
              <exon start="62143" stop="62147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54304" stop="54326"/>
              <exon start="55140" stop="55308"/>
              <exon start="56501" stop="56957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56546" stop="57006"/>
              <exon start="57548" stop="57609"/>
              <exon start="57693" stop="57795"/>
              <exon start="57882" stop="57939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCATCAAAGGCACTCAACTTTCTTGAAATACTTCGATTTTCTTCTTTATACCGAGAAAAAAAGCTCCGGTGCCGGAGAAGAAATCGGCGGCAAACTTCCATCGACGGCGCGTCCTTGGTGTACATTCTTGAACAAGAAAATGGTTTGGGGCCTTTTTCCTATTGATCCTCTTCCAG : GTGAAGATAGTTACTATTTCTTCAACGAAGGTACATATAAAGTGGGTCGAAAAG : GATGTGATGTCATTGTCAACAAGGATAAAGGAGTTTCAAGGATACATGCAGAAATTTTAGTAGATGAGATGATTTCTTTGGATCAGTCGAAGAAACCCTCAAATATTCTGTCTAAAGTACGTGTAAGAGACTGCTCAAAGTATGGCACATTCCTCAACAAGAATCTGGATTCGAAGGAGAAAGTTCATGAGTTTCCAAATAAAGAAACGATGCTCAAGGATGGCGATCTAGTTTCATTTGGAACTGGTAATGCAACTTACAG : ATTCTCTTACGTATCATTCATATTTTTCATTTGCTCCCCGAAGCATTCAAAAACAAATCAACTTATTACAAAGAAGGTTTCATCAATAG : GTGCAAGTATAACTAAGAAGTGGAGTTTGGATTGCTCACATGTGCTTGTAGATGACTCCTTTCCTCTGAGTGATGACCTGATTGATGCTATTGTCGCTAGAAAACCCTTGGTTCAGTATAGCTGGGTCGAG : CTAATTGCAGGAAAAAATATTTGCACCGATATTCCAAGCCACAGTTC : TCATGCACCAAAGTTGATGCTGGAAGGAGTTTCCGTGCAAGTGGTAGATCCTCAATCCCGTGAGTGTTGTTTGAAAGGATATGCTTTTTTGCTGGAACCAGAAAACAAG : TATAAATTTGAGGGCAGGTTGCAGTCCTTACTGGAAGTTGGGGGTGCCAACATTTCTTCTTCTGAAATG : GTCTCGGAGAAAAATGGAAATGACCGTGTGGTATGTGTAGTTCCAGCAGGATCAAACAACTTTAAGTCTTTTTCTAACCAAAGTTCCTTGCCTTGGGTGAGTGAAATAGATCTGGTTTCTGCGGTTCTATCCGGATATCTGGATCCTATTCTTATCACATCCCCACCGG : TGCTCATTACCTCTTCATGCTCCACAGATGAGACAGTGGTTGCAGACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTGTTAGAGATTCTATCATGTCATTACCAGTCTCTTCTTCATCAAATGGCGGAGTTGCAAATTTTAAGCGCTTCCGTAAG : GCAAATGCTCCATCCCAGAATAGCTTTGCAATCTTCATTCCATTCTCCAAGCATCCATACCA : AGAATCTGAGTGTAAGAATGAGGATGTTGCTGAATCTATTAGAGAAGAGAAAAAAAGAAAACAGATGGAAGCAATTGCCGAGGACCTGTTTAAAAGTGAAAAG : GGAAAAAAAAGTGGTGTTGCTGGTTCCTTGCATGGGTTGTTTGCTCGTAGATAATATG : ATACCAAAGATACAGAGATGTACTGGATCAACCATCCAAGACATTTTGTTGGTATTCCTAGTTTCTTAGCAAACACTGTAGATAGACCCCTCCTTTTCTTTTCTCCTTGTATGAAGATGGGGAAGTCATCAAGTTCTCTTCAGGATGAATTTTGTTAAGCTATTGTATTGGGTCATTCTTGAAACTAAACTTCAGCGTCCGTGGGAAATCATAGGATTTGCACCCGGCAGTTGATTGTACATGATGGTGTTATTCAAGCTTATAAAAAGTTTTTTCAAA : AACTA</gDNA_template>
            <first_frame> C  P  S  K  A  L  N  F  L  E  I  L  R  F  S  S  L  Y  R  E  K  K  L  R  C  R  R  R  N  R  R  Q  T  S  I  D  G  A  S  L  V  Y  I  L  E  Q  E  N  G  L  G  P  F  S  Y  *  S  S  S  R :   *  R  *  L  L  F  L  Q  R  R  Y  I  *  S  G  S  K  R :   M  *  C  H  C  Q  Q  G  *  R  S  F  K  D  T  C  R  N  F  S  R  *  D  D  F  F  G  S  V  E  E  T  L  K  Y  S  V  *  S  T  C  K  R  L  L  K  V  W  H  I  P  Q  Q  E  S  G  F  E  G  E  S  S  *  V  S  K  *  R  N  D  A  Q  G  W  R  S  S  F  I  W  N  W  *  C  N  L  Q  :  I  L  L  R  I  I  H  I  F  H  L  L  P  E  A  F  K  N  K  S  T  Y  Y  K  E  G  F  I  N  R :   C  K  Y  N  *  E  V  E  F  G  L  L  T  C  A  C  R  *  L  L  S  S  E  *  *  P  D  *  C  Y  C  R  *  K  T  L  G  S  V  *  L  G  R   : A  N  C  R  K  K  Y  L  H  R  Y  S  K  P  Q  F  :  S  C  T  K  V  D  A  G  R  S  F  R  A  S  G  R  S  S  I  P  *  V  L  F  E  R  I  C  F  F  A  G  T  R  K  Q   : V  *  I  *  G  Q  V  A  V  L  T  G  S  W  G  C  Q  H  F  F  F  *  N   : G  L  G  E  K  W  K  *  P  C  G  M  C  S  S  S  R  I  K  Q  L  *  V  F  F  *  P  K  F  L  A  L  G  E  *  N  R  S  G  F  C  G  S  I  R  I  S  G  S  Y  S  Y  H  I  P  T  G :   A  H  Y  L  F  M  L  H  R  *  D  S  G  C  R  L  R  C  R  N  R  K  Y  K  I  R  S  R  R  C  C  F  L  F  N  R  I  F  *  A  *  Q  Q  G  N  N  F  Y  T  Q  V  R  I  C  *  I  S  Q  R  R  *  V  Y  C  S  N  R  D  A  *  G  *  G  I  H  E  G  H  I  S  Q  F  N  K  T  Y  *  T  R  W  K  S  H  N  T  *  *  C  Y  H  P  *  R  R  R  W  L  H  Q  A  P  R  C  Q  K  *  *  Y  S  G  K  R  R  Y  H  G  S  A  G  K  W  E  V  G  Y  H  I  *  P  R  F  N  C  *  R  F  Y  H  V  I  T  S  L  F  F  I  K  W  R  S  C  K  F  *  A  L  P  *   : G  K  C  S  I  P  E  *  L  C  N  L  H  S  I  L  Q  A  S  I  P  :  R  I  *  V  *  E  *  G  C  C  *  I  Y  *  R  R  E  K  K  K  T  D  G  S  N  C  R  G  P  V  *  K  *  K   : G  K  K  K  W  C  C  W  F  L  A  W  V  V  C  S  *  I  I  * :   Y  Q  R  Y  R  D  V  L  D  Q  P  S  K  T  F  C  W  Y  S  *  F  L  S  K  H  C  R  *  T  P  P  F  L  F  S  L  Y  E  D  G  E  V  I  K  F  S  S  G  *  I  L  L  S  Y  C  I  G  S  F  L  K  L  N  F  S  V  R  G  K  S  *  D  L  H  P  A  V  D  C  T  *  W  C  Y  S  S  L  *  K  V  F  S  K :   T  </first_frame>
            <second_frame>  V  H  Q  R  H  S  T  F  L  K  Y  F  D  F  L  L  Y  T  E  K  K  S  S  G  A  G  E  E  I  G  G  K  L  P  S  T  A  R  P  W  C  T  F  L  N  K  K  M  V  W  G  L  F  P  I  D  P  L  P   : G  E  D  S  Y  Y  F  F  N  E  G  T  Y  K  V  G  R  K   : G  C  D  V  I  V  N  K  D  K  G  V  S  R  I  H  A  E  I  L  V  D  E  M  I  S  L  D  Q  S  K  K  P  S  N  I  L  S  K  V  R  V  R  D  C  S  K  Y  G  T  F  L  N  K  N  L  D  S  K  E  K  V  H  E  F  P  N  K  E  T  M  L  K  D  G  D  L  V  S  F  G  T  G  N  A  T  Y  R :   F  S  Y  V  S  F  I  F  F  I  C  S  P  K  H  S  K  T  N  Q  L  I  T  K  K  V  S  S  I   : G  A  S  I  T  K  K  W  S  L  D  C  S  H  V  L  V  D  D  S  F  P  L  S  D  D  L  I  D  A  I  V  A  R  K  P  L  V  Q  Y  S  W  V  E  :  L  I  A  G  K  N  I  C  T  D  I  P  S  H  S  S :   H  A  P  K  L  M  L  E  G  V  S  V  Q  V  V  D  P  Q  S  R  E  C  C  L  K  G  Y  A  F  L  L  E  P  E  N  K  :  Y  K  F  E  G  R  L  Q  S  L  L  E  V  G  G  A  N  I  S  S  S  E  M  :  V  S  E  K  N  G  N  D  R  V  V  C  V  V  P  A  G  S  N  N  F  K  S  F  S  N  Q  S  S  L  P  W  V  S  E  I  D  L  V  S  A  V  L  S  G  Y  L  D  P  I  L  I  T  S  P  P   : V  L  I  T  S  S  C  S  T  D  E  T  V  V  A  D  S  D  A  E  T  E  S  T  K  S  D  H  V  A  A  A  F  C  S  I  E  S  S  E  H  D  S  K  G  T  T  S  I  H  K  L  E  S  V  E  Y  H  N  E  D  K  C  T  V  Q  I  E  M  P  R  D  K  V  S  M  R  D  T  S  P  S  S  T  K  H  I  K  H  D  G  S  H  I  T  H  D  D  A  T  I  H  D  G  E  G  G  Y  I  R  R  L  G  V  K  S  D  N  T  V  V  K  E  D  I  T  D  Q  R  E  N  G  K  L  D  I  I  Y  S  Q  D  L  I  V  R  D  S  I  M  S  L  P  V  S  S  S  S  N  G  G  V  A  N  F  K  R  F  R  K  :  A  N  A  P  S  Q  N  S  F  A  I  F  I  P  F  S  K  H  P  Y  Q :   E  S  E  C  K  N  E  D  V  A  E  S  I  R  E  E  K  K  R  K  Q  M  E  A  I  A  E  D  L  F  K  S  E  K  :  G  K  K  S  G  V  A  G  S  L  H  G  L  F  A  R  R  *  Y   : D  T  K  D  T  E  M  Y  W  I  N  H  P  R  H  F  V  G  I  P  S  F  L  A  N  T  V  D  R  P  L  L  F  F  S  P  C  M  K  M  G  K  S  S  S  S  L  Q  D  E  F  C  *  A  I  V  L  G  H  S  *  N  *  T  S  A  S  V  G  N  H  R  I  C  T  R  Q  L  I  V  H  D  G  V  I  Q  A  Y  K  K  F  F  Q   : K  L </second_frame>
            <third_frame>   S  I  K  G  T  Q  L  S  *  N  T  S  I  F  F  F  I  P  R  K  K  A  P  V  P  E  K  K  S  A  A  N  F  H  R  R  R  V  L  G  V  H  S  *  T  R  K  W  F  G  A  F  F  L  L  I  L  F  Q  :  V  K  I  V  T  I  S  S  T  K  V  H  I  K  W  V  E  K  :  D  V  M  S  L  S  T  R  I  K  E  F  Q  G  Y  M  Q  K  F  *  *  M  R  *  F  L  W  I  S  R  R  N  P  Q  I  F  C  L  K  Y  V  *  E  T  A  Q  S  M  A  H  S  S  T  R  I  W  I  R  R  R  K  F  M  S  F  Q  I  K  K  R  C  S  R  M  A  I  *  F  H  L  E  L  V  M  Q  L  T   : D  S  L  T  Y  H  S  Y  F  S  F  A  P  R  S  I  Q  K  Q  I  N  L  L  Q  R  R  F  H  Q  *  :  V  Q  V  *  L  R  S  G  V  W  I  A  H  M  C  L  *  M  T  P  F  L  *  V  M  T  *  L  M  L  L  S  L  E  N  P  W  F  S  I  A  G  S  S :   *  L  Q  E  K  I  F  A  P  I  F  Q  A  T  V   : L  M  H  Q  S  *  C  W  K  E  F  P  C  K  W  *  I  L  N  P  V  S  V  V  *  K  D  M  L  F  C  W  N  Q  K  T  S :   I  N  L  R  A  G  C  S  P  Y  W  K  L  G  V  P  T  F  L  L  L  K  W :   S  R  R  K  M  E  M  T  V  W  Y  V  *  F  Q  Q  D  Q  T  T  L  S  L  F  L  T  K  V  P  C  L  G  *  V  K  *  I  W  F  L  R  F  Y  P  D  I  W  I  L  F  L  S  H  P  H  R  :  C  S  L  P  L  H  A  P  Q  M  R  Q  W  L  Q  T  Q  M  P  K  Q  K  V  Q  N  Q  I  T  S  L  L  L  S  V  Q  *  N  L  L  S  M  T  A  R  E  Q  L  L  Y  T  S  *  N  L  L  N  I  T  T  K  I  S  V  L  F  K  *  R  C  L  G  I  R  Y  P  *  G  T  H  L  P  V  Q  Q  N  I  L  N  T  M  E  V  T  *  H  M  M  M  L  P  S  M  T  A  K  V  V  T  S  G  A  *  V  S  K  V  I  I  Q  W  *  K  K  I  S  R  I  S  G  K  M  G  S  W  I  S  Y  I  A  K  I  *  L  L  E  I  L  S  C  H  Y  Q  S  L  L  H  Q  M  A  E  L  Q  I  L  S  A  S  V  R :   Q  M  L  H  P  R  I  A  L  Q  S  S  F  H  S  P  S  I  H  T   : K  N  L  S  V  R  M  R  M  L  L  N  L  L  E  K  R  K  K  E  N  R  W  K  Q  L  P  R  T  C  L  K  V  K  R :   E  K  K  V  V  L  L  V  P  C  M  G  C  L  L  V  D  N  M  :  I  P  K  I  Q  R  C  T  G  S  T  I  Q  D  I  L  L  V  F  L  V  S  *  Q  T  L  *  I  D  P  S  F  S  F  L  L  V  *  R  W  G  S  H  Q  V  L  F  R  M  N  F  V  K  L  L  Y  W  V  I  L  E  T  K  L  Q  R  P  W  E  I  I  G  F  A  P  G  S  *  L  Y  M  M  V  L  F  K  L  I  K  S  F  F  K  :  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49524" stop="49701"/>
                    <exon start="50876" stop="50929"/>
                    <exon start="51514" stop="51775"/>
                    <exon start="51885" stop="51973"/>
                    <exon start="52628" stop="52758"/>
                    <exon start="53874" stop="53920"/>
                    <exon start="54021" stop="54129"/>
                    <exon start="54258" stop="54326"/>
                    <exon start="55140" stop="55308"/>
                    <exon start="56501" stop="57006"/>
                    <exon start="57548" stop="57609"/>
                    <exon start="57693" stop="57795"/>
                    <exon start="57882" stop="57935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1830</number_coding_nucleotides>
                  <number_encoded_amino_acids>610</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHQRHSTFLKYFDFLLYTEKKSSGAGEEIGGKLPSTARPWCTFLNKKMVWGLFPIDPLPGEDSYYFFNEGTYKVGRKGCDVIVNKDKGVSRIHAEILVDEMISLDQSKKPSNILSKVRVRDCSKYGTFLNKNLDSKEKVHEFPNKETMLKDGDLVSFGTGNATYRFSYVSFIFFICSPKHSKTNQLITKKVSSIGASITKKWSLDCSHVLVDDSFPLSDDLIDAIVARKPLVQYSWVELIAGKNICTDIPSHSSHAPKLMLEGVSVQVVDPQSRECCLKGYAFLLEPENKYKFEGRLQSLLEVGGANISSSEMVSEKNGNDRVVCVVPAGSNNFKSFSNQSSLPWVSEIDLVSAVLSGYLDPILITSPPVLITSSCSTDETVVADSDAETESTKSDHVAAAFCSIESSEHDSKGTTSIHKLESVEYHNEDKCTVQIEMPRDKVSMRDTSPSSTKHIKHDGSHITHDDATIHDGEGGYIRRLGVKSDNTVVKEDITDQRENGKLDIIYSQDLIVRDSIMSLPVSSSSNGGVANFKRFRKANAPSQNSFAIFIPFSKHPYQESECKNEDVAESIREEKKRKQMEAIAEDLFKSEKGKKSGVAGSLHGLFARR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55641" e_stop="56352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="55641" e_stop="56352" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55641" stop="56352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55641" stop="56012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTATCACTGTGCATCTGTGCCTACTGTTGTGCAAAAGCAAATAAAAATTGCTTGTTAGAGTAGCCAAGAGATTTAAGAGTGTGGCTTTGGACTGGTTGATAATGTCAACTAATCGTGCAATAGAATTTCTCATAAAATCTTGCTCATTCTTGTTTAATGCTGGTTGAGTTGATTTTTAACTAGGGAACGATTCATTATTAGTACGACTAATGGATTCCCTTTAGATAGATAGAAACTGGCTACTCATGACCATGGTAATTGGTCATTGATCTTGCAGTTTGTAATGTCTTTCAACAATTGATTCTTGAAGCAGTCGCCTTAATTTCTCCAAATGAAAAAGTAAACTACCTTTGTAAGCTAGCTTTGATGTGACATATTAACTAAAAATGCAACAGTTTTTCTTTTCACAATAAGTTTTTTAATAATTTACAAAATCCCTGCTTTGTGTACCATTTGCTCAAAATGGATCCAAGAAGTTTCTTACACAAATAAATTGCTTGTGGATATGCTTGAATGCGTGGATACTGGATAACTTATTTTACTTTTCTGACTTCAAGAAGTACATGAGTAGAATTCATTTGTTTTGATGAAGTAGGTAGGATATATCACAACAGGCAGAAATCCTTTTGTGCAAATAATATAGAAGATGCAAAAAGGTTACAAAAGAAGTGAGAAATTCATTGAAGTCTTTATCAGGACATTCTGGTT</gDNA_template>
            <first_frame> H  F  I  T  V  H  L  C  L  L  L  C  K  S  K  *  K  L  L  V  R  V  A  K  R  F  K  S  V  A  L  D  W  L  I  M  S  T  N  R  A  I  E  F  L  I  K  S  C  S  F  L  F  N  A  G  *  V  D  F  *  L  G  N  D  S  L  L  V  R  L  M  D  S  L  *  I  D  R  N  W  L  L  M  T  M  V  I  G  H  *  S  C  S  L  *  C  L  S  T  I  D  S  *  S  S  R  L  N  F  S  K  *  K  S  K  L  P  L  *  A  S  F  D  V  T  Y  *  L  K  M  Q  Q  F  F  F  S  Q  *  V  F  *  *  F  T  K  S  L  L  C  V  P  F  A  Q  N  G  S  K  K  F  L  T  Q  I  N  C  L  W  I  C  L  N  A  W  I  L  D  N  L  F  Y  F  S  D  F  K  K  Y  M  S  R  I  H  L  F  *  *  S  R  *  D  I  S  Q  Q  A  E  I  L  L  C  K  *  Y  R  R  C  K  K  V  T  K  E  V  R  N  S  L  K  S  L  S  G  H  S  G  </first_frame>
            <second_frame>  I  L  S  L  C  I  C  A  Y  C  C  A  K  A  N  K  N  C  L  L  E  *  P  R  D  L  R  V  W  L  W  T  G  *  *  C  Q  L  I  V  Q  *  N  F  S  *  N  L  A  H  S  C  L  M  L  V  E  L  I  F  N  *  G  T  I  H  Y  *  Y  D  *  W  I  P  F  R  *  I  E  T  G  Y  S  *  P  W  *  L  V  I  D  L  A  V  C  N  V  F  Q  Q  L  I  L  E  A  V  A  L  I  S  P  N  E  K  V  N  Y  L  C  K  L  A  L  M  *  H  I  N  *  K  C  N  S  F  S  F  H  N  K  F  F  N  N  L  Q  N  P  C  F  V  Y  H  L  L  K  M  D  P  R  S  F  L  H  K  *  I  A  C  G  Y  A  *  M  R  G  Y  W  I  T  Y  F  T  F  L  T  S  R  S  T  *  V  E  F  I  C  F  D  E  V  G  R  I  Y  H  N  R  Q  K  S  F  C  A  N  N  I  E  D  A  K  R  L  Q  K  K  *  E  I  H  *  S  L  Y  Q  D  I  L  V </second_frame>
            <third_frame>   F  Y  H  C  A  S  V  P  T  V  V  Q  K  Q  I  K  I  A  C  *  S  S  Q  E  I  *  E  C  G  F  G  L  V  D  N  V  N  *  S  C  N  R  I  S  H  K  I  L  L  I  L  V  *  C  W  L  S  *  F  L  T  R  E  R  F  I  I  S  T  T  N  G  F  P  L  D  R  *  K  L  A  T  H  D  H  G  N  W  S  L  I  L  Q  F  V  M  S  F  N  N  *  F  L  K  Q  S  P  *  F  L  Q  M  K  K  *  T  T  F  V  S  *  L  *  C  D  I  L  T  K  N  A  T  V  F  L  F  T  I  S  F  L  I  I  Y  K  I  P  A  L  C  T  I  C  S  K  W  I  Q  E  V  S  Y  T  N  K  L  L  V  D  M  L  E  C  V  D  T  G  *  L  I  L  L  F  *  L  Q  E  V  H  E  *  N  S  F  V  L  M  K  *  V  G  Y  I  T  T  G  R  N  P  F  V  Q  I  I  *  K  M  Q  K  G  Y  K  R  S  E  K  F  I  E  V  F  I  R  T  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0165K22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56419" e_stop="57006"/>
            <exon e_start="57548" e_stop="57720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56419" e_stop="57006" e_length="588"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57007" i_stop="57547" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="57548" e_stop="57720" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56419" stop="57006"/>
              <exon start="57548" stop="57720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATAAGATGTGCATTGTTATGAATGTATGTTCTTTGCCAATTTTATCTTATATTCTTTACTAAATAATTGTCCTCTGCAGTGCTCATTACCTCTTCATGCTCCACAGATGAGACAGTGGTTGCAGACTCAGATGCCGAAACAGAAAGTACAAAATCAGATCACGTCGCTGCTGCTTTCTGTTCAATAGAATCTTCTGAGCATGACAGCAAGGGAACAACTTCTATACACAAGTTAGAATCTGTTGAATATCACAACGAAGATAAGTGTACTGTTCAAATAGAGATGCCTAGGGATAAGGTATCCATGAGGGACACATCTCCCAGTTCAACAAAACATATTAAACACGATGGAAGTCACATAACACATGATGATGCTACCATCCATGACGGCGAAGGTGGTTACATCAGGCGCCTAGGTGTCAAAAGTGATAATACAGTGGTAAAAGAAGATATCACGGATCAGCGGGAAAATGGGAAGTTGGATATCATATATAGCCAAGATTTAATTGTTAGAGATTCTATCATGTCATTACCAGTCTCTTCTTCATCAAATGGCGGAGTTGCAAATTTTAAGCGCTTCCGTAAG : GCAAATGCTCCATCCCAGAATAGCTTTGCAATCTTCATTCCATTCTCCAAGCATCCATACCAGTAAGCAGCTAAGTCTATCTCTGGTTTGTTTATAGTCTGTATTACATATCAGACTTTGATGTTGATCTGTGATCATATGGCAGAGAATCTGAGTGTAAGAATGAGGATGTT</gDNA_template>
            <first_frame> L  I  R  C  A  L  L  *  M  Y  V  L  C  Q  F  Y  L  I  F  F  T  K  *  L  S  S  A  V  L  I  T  S  S  C  S  T  D  E  T  V  V  A  D  S  D  A  E  T  E  S  T  K  S  D  H  V  A  A  A  F  C  S  I  E  S  S  E  H  D  S  K  G  T  T  S  I  H  K  L  E  S  V  E  Y  H  N  E  D  K  C  T  V  Q  I  E  M  P  R  D  K  V  S  M  R  D  T  S  P  S  S  T  K  H  I  K  H  D  G  S  H  I  T  H  D  D  A  T  I  H  D  G  E  G  G  Y  I  R  R  L  G  V  K  S  D  N  T  V  V  K  E  D  I  T  D  Q  R  E  N  G  K  L  D  I  I  Y  S  Q  D  L  I  V  R  D  S  I  M  S  L  P  V  S  S  S  S  N  G  G  V  A  N  F  K  R  F  R  K  :  A  N  A  P  S  Q  N  S  F  A  I  F  I  P  F  S  K  H  P  Y  Q  *  A  A  K  S  I  S  G  L  F  I  V  C  I  T  Y  Q  T  L  M  L  I  C  D  H  M  A  E  N  L  S  V  R  M  R  M   </first_frame>
            <second_frame>  *  *  D  V  H  C  Y  E  C  M  F  F  A  N  F  I  L  Y  S  L  L  N  N  C  P  L  Q  C  S  L  P  L  H  A  P  Q  M  R  Q  W  L  Q  T  Q  M  P  K  Q  K  V  Q  N  Q  I  T  S  L  L  L  S  V  Q  *  N  L  L  S  M  T  A  R  E  Q  L  L  Y  T  S  *  N  L  L  N  I  T  T  K  I  S  V  L  F  K  *  R  C  L  G  I  R  Y  P  *  G  T  H  L  P  V  Q  Q  N  I  L  N  T  M  E  V  T  *  H  M  M  M  L  P  S  M  T  A  K  V  V  T  S  G  A  *  V  S  K  V  I  I  Q  W  *  K  K  I  S  R  I  S  G  K  M  G  S  W  I  S  Y  I  A  K  I  *  L  L  E  I  L  S  C  H  Y  Q  S  L  L  H  Q  M  A  E  L  Q  I  L  S  A  S  V  R :   Q  M  L  H  P  R  I  A  L  Q  S  S  F  H  S  P  S  I  H  T  S  K  Q  L  S  L  S  L  V  C  L  *  S  V  L  H  I  R  L  *  C  *  S  V  I  I  W  Q  R  I  *  V  *  E  *  G  C  </second_frame>
            <third_frame>   D  K  M  C  I  V  M  N  V  C  S  L  P  I  L  S  Y  I  L  Y  *  I  I  V  L  C  S  A  H  Y  L  F  M  L  H  R  *  D  S  G  C  R  L  R  C  R  N  R  K  Y  K  I  R  S  R  R  C  C  F  L  F  N  R  I  F  *  A  *  Q  Q  G  N  N  F  Y  T  Q  V  R  I  C  *  I  S  Q  R  R  *  V  Y  C  S  N  R  D  A  *  G  *  G  I  H  E  G  H  I  S  Q  F  N  K  T  Y  *  T  R  W  K  S  H  N  T  *  *  C  Y  H  P  *  R  R  R  W  L  H  Q  A  P  R  C  Q  K  *  *  Y  S  G  K  R  R  Y  H  G  S  A  G  K  W  E  V  G  Y  H  I  *  P  R  F  N  C  *  R  F  Y  H  V  I  T  S  L  F  F  I  K  W  R  S  C  K  F  *  A  L  P  *   : G  K  C  S  I  P  E  *  L  C  N  L  H  S  I  L  Q  A  S  I  P  V  S  S  *  V  Y  L  W  F  V  Y  S  L  Y  Y  I  S  D  F  D  V  D  L  *  S  Y  G  R  E  S  E  C  K  N  E  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56488" stop="57006"/>
                    <exon start="57548" stop="57613"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSAVLITSSCSTDETVVADSDAETESTKSDHVAAAFCSIESSEHDSKGTTSIHKLESVEYHNEDKCTVQIEMPRDKVSMRDTSPSSTKHIKHDGSHITHDDATIHDGEGGYIRRLGVKSDNTVVKEDITDQRENGKLDIIYSQDLIVRDSIMSLPVSSSSNGGVANFKRFRKANAPSQNSFAIFIPFSKHPYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="51732" e_stop="51775"/>
            <exon e_start="51885" e_stop="51973"/>
            <exon e_start="52628" e_stop="53002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.320" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51732" e_stop="51775" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.320">
            <gDNA_intron_boundary i_start="51776" i_stop="51884" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51885" e_stop="51973" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51974" i_stop="52627" i_length="654"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="52628" e_stop="53002" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51732" stop="51775"/>
              <exon start="51885" stop="51973"/>
              <exon start="52628" stop="53002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGCGATCTAGTTTCATTTGGAACTGGTAATGCAACTTACAG : ATTCTCTTACGTATCATTCATATTTTTCATTTGCTCCCCGAAGCATTCAAAAACAAATCAACTTATTACAAAGAAGGTTTCATCAATAG : GTGCAAGTATAACTAAGAAGTGGAGTTTGGATTGCTCACATGTGCTTGTAGATGACTCCTTTCCTCTGAGTGATGACCTGATTGATGCTATTGTCGCTAGAAAACCCTTGGTTCAGTATAGCTGGGTCGAGGTATTCTTGTATAAATTACCTAAGATTTTGCAAGTATAATTTGCCAATAAACATGTTTATTCGCATTTAGAGTAGCTGATATCTAGATACACAATGTAGTTCAAAGTAGTGATACTGTAACCAAATGTATACACATGACAATCCTTACACATAGATTTACTAATGTGAGGAATATGATTTAGTTGTTTTATGATTGTGCTTTACCTACCTTACATTATGTTAGATCTTTCCCTTTGTTATTTGA</gDNA_template>
            <first_frame> D  G  D  L  V  S  F  G  T  G  N  A  T  Y  R :   F  S  Y  V  S  F  I  F  F  I  C  S  P  K  H  S  K  T  N  Q  L  I  T  K  K  V  S  S  I   : G  A  S  I  T  K  K  W  S  L  D  C  S  H  V  L  V  D  D  S  F  P  L  S  D  D  L  I  D  A  I  V  A  R  K  P  L  V  Q  Y  S  W  V  E  V  F  L  Y  K  L  P  K  I  L  Q  V  *  F  A  N  K  H  V  Y  S  H  L  E  *  L  I  S  R  Y  T  M  *  F  K  V  V  I  L  *  P  N  V  Y  T  *  Q  S  L  H  I  D  L  L  M  *  G  I  *  F  S  C  F  M  I  V  L  Y  L  P  Y  I  M  L  D  L  S  L  C  Y  L  </first_frame>
            <second_frame>  M  A  I  *  F  H  L  E  L  V  M  Q  L  T   : D  S  L  T  Y  H  S  Y  F  S  F  A  P  R  S  I  Q  K  Q  I  N  L  L  Q  R  R  F  H  Q  *  :  V  Q  V  *  L  R  S  G  V  W  I  A  H  M  C  L  *  M  T  P  F  L  *  V  M  T  *  L  M  L  L  S  L  E  N  P  W  F  S  I  A  G  S  R  Y  S  C  I  N  Y  L  R  F  C  K  Y  N  L  P  I  N  M  F  I  R  I  *  S  S  *  Y  L  D  T  Q  C  S  S  K  *  *  Y  C  N  Q  M  Y  T  H  D  N  P  Y  T  *  I  Y  *  C  E  E  Y  D  L  V  V  L  *  L  C  F  T  Y  L  T  L  C  *  I  F  P  F  V  I  * </second_frame>
            <third_frame>   W  R  S  S  F  I  W  N  W  *  C  N  L  Q  :  I  L  L  R  I  I  H  I  F  H  L  L  P  E  A  F  K  N  K  S  T  Y  Y  K  E  G  F  I  N  R :   C  K  Y  N  *  E  V  E  F  G  L  L  T  C  A  C  R  *  L  L  S  S  E  *  *  P  D  *  C  Y  C  R  *  K  T  L  G  S  V  *  L  G  R  G  I  L  V  *  I  T  *  D  F  A  S  I  I  C  Q  *  T  C  L  F  A  F  R  V  A  D  I  *  I  H  N  V  V  Q  S  S  D  T  V  T  K  C  I  H  M  T  I  L  T  H  R  F  T  N  V  R  N  M  I  *  L  F  Y  D  C  A  L  P  T  L  H  Y  V  R  S  F  P  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51732" stop="51775"/>
                    <exon start="51885" stop="51973"/>
                    <exon start="52628" stop="52797"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGDLVSFGTGNATYRFSYVSFIFFICSPKHSKTNQLITKKVSSIGASITKKWSLDCSHVLVDDSFPLSDDLIDAIVARKPLVQYSWVEVFLYKLPKILQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="66597" PGL_stop="65021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66473" e_stop="66318"/>
            <exon e_start="66225" e_stop="65021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66473" e_stop="66318" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66317" i_stop="66226" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66225" e_stop="65021" e_length="1205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66473" stop="66318"/>
              <exon start="66225" stop="65749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66473" stop="66318"/>
              <exon start="66225" stop="66106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65894" stop="65465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65719" stop="65235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65705" stop="65021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAGGTACTACTTGCATATCTTAATTAATTTTTTCCATCATTATTTAAAAAACACTTAACAGACACTTTTTATTTTTGTCCATAATAGGTAACAACACTAAGCAGCACTTGATTGCAG : GTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACAAGGCCATCAGACCAACACGATATTCTTATGCTGATATTAAGAAGGTAACAGATGATTTTAATGAAAAGTTAGGAGAAGGGAGTTATGGAACTGTATACAAAGGCAAACTTTCCAGTGACATCTATGTTGCAGTAAAAGTCCTACGCGATTCCAAGGGTAAAGGGGAAGAATTTATCAATGAAATTGATACGATTGGGAGAATCCACCATGTTAATGTGGTCCGTTTGGTTGGTTTTTGTGCTGATGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTAAGCTCAAGCCCGGGTAGTGTTTCACTCATCAGCTGGCACAAGCTTCACCATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTCTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGAACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATAGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTAAAGATTCAGATAGAGGAAGAAGGAGATGGTAGAATTGTGAGAAAGTTAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCAATTGATAGGCCTTCAATCAAAGAAGTTACTCAGATGTTGGAAGGAGATGGAAGCCATCTCAACTTGTCCCCAAATCCTTTTATGGCTACTGATAAGCCTAAGTTAAATGCAAGTTCTCACGGTGAAGATCTAGACGTGATATTAGAAATTGAATAGCACTTCAAAATCATTTCTAAAAGAATTGCAAAAGTATTTTATTTCATAGTAGTGATCAGGAAGCTGAATGATAAATATGTAGACTTATTAATT</gDNA_template>
            <first_frame> W  K  L  I  V  S  I  E  K  I  *  P  E  Q  V  L  L  A  Y  L  N  *  F  F  P  S  L  F  K  K  H  L  T  D  T  F  Y  F  C  P  *  *  V  T  T  L  S  S  T  *  L  Q  :  V  *  F  Q  V  Q  R  L  F  A  L  L  S  S  H  F  I  S  Y  T  *  Q  V  E  T  K  E  R  V  E  L  D  L  K  S  F  W  M  T  T  R  P  S  D  Q  H  D  I  L  M  L  I  L  R  R  *  Q  M  I  L  M  K  S  *  E  K  G  V  M  E  L  Y  T  K  A  N  F  P  V  T  S  M  L  Q  *  K  S  Y  A  I  P  R  V  K  G  K  N  L  S  M  K  L  I  R  L  G  E  S  T  M  L  M  W  S  V  W  L  V  F  V  L  M  D  S  D  E  L  *  S  T  N  T  Y  Q  M  I  H  L  K  G  L  F  Y  Q  *  A  Q  A  R  V  V  F  H  S  S  A  G  T  S  F  T  I  L  L  W  V  L  Q  E  G  L  S  I  F  T  R  D  V  I  S  K  S  C  I  S  I  S  N  H  K  T  S  F  *  T  T  T  *  T  P  K  Y  V  I  L  A  *  P  N  C  V  L  K  K  K  V  R  S  L  *  Q  L  L  G  E  P  L  V  T  L  H  Q  K  C  Y  Q  E  T  L  V  K  F  L  I  S  L  I  F  I  A  L  G  C  S  C  *  K  W  L  V  G  G  *  I  W  M  L  R  R  I  T  I  A  K  *  I  L  W  N  G  Y  I  D  I  W  R  K  G  K  N  *  R  F  R  *  R  K  K  E  M  V  E  L  *  E  S  *  L  L  L  D  F  G  A  Y  S  G  I  Q  L  I  G  L  Q  S  K  K  L  L  R  C  W  K  E  M  E  A  I  S  T  C  P  Q  I  L  L  W  L  L  I  S  L  S  *  M  Q  V  L  T  V  K  I  *  T  *  Y  *  K  L  N  S  T  S  K  S  F  L  K  E  L  Q  K  Y  F  I  S  *  *  *  S  G  S  *  M  I  N  M  *  T  Y  *   </first_frame>
            <second_frame>  G  N  S  L  F  Q  S  K  R  Y  N  P  N  R  Y  Y  L  H  I  L  I  N  F  F  H  H  Y  L  K  N  T  *  Q  T  L  F  I  F  V  H  N  R  *  Q  H  *  A  A  L  D  C  R :   C  S  F  R  C  S  A  C  L  H  Y  C  L  L  T  L  *  A  I  P  D  K  *  K  Q  K  R  E  S  S  *  T  *  K  V  F  G  *  L  Q  G  H  Q  T  N  T  I  F  L  C  *  Y  *  E  G  N  R  *  F  *  *  K  V  R  R  R  E  L  W  N  C  I  Q  R  Q  T  F  Q  *  H  L  C  C  S  K  S  P  T  R  F  Q  G  *  R  G  R  I  Y  Q  *  N  *  Y  D  W  E  N  P  P  C  *  C  G  P  F  G  W  F  L  C  *  W  I  Q  T  S  S  D  L  R  I  P  T  K  *  F  T  *  K  V  Y  F  T  S  K  L  K  P  G  *  C  F  T  H  Q  L  A  Q  A  S  P  Y  C  S  G  Y  C  K  R  D  *  V  S  S  P  G  M  *  S  A  N  P  A  F  R  Y  Q  T  T  K  H  P  S  R  P  Q  L  E  P  Q  N  M  *  F  W  P  S  Q  T  V  F  *  R  K  K  C  G  H  Y  D  S  C  *  G  N  H  W  L  H  C  T  R  S  V  I  K  K  L  W  *  S  F  S  *  V  *  Y  L  *  L  W  D  A  L  V  R  N  G  W  W  E  D  K  Y  G  C  *  D  E  *  P  *  Q  S  E  F  F  G  M  D  I  *  T  F  G  E  R  G  R  I  K  D  S  D  R  G  R  R  R  W  *  N  C  E  K  V  S  Y  C  W  T  L  V  H  T  V  A  S  N  *  *  A  F  N  Q  R  S  Y  S  D  V  G  R  R  W  K  P  S  Q  L  V  P  K  S  F  Y  G  Y  *  *  A  *  V  K  C  K  F  S  R  *  R  S  R  R  D  I  R  N  *  I  A  L  Q  N  H  F  *  K  N  C  K  S  I  L  F  H  S  S  D  Q  E  A  E  *  *  I  C  R  L  I  N  </second_frame>
            <third_frame>   E  T  H  C  F  N  R  K  D  I  T  R  T  G  T  T  C  I  S  *  L  I  F  S  I  I  I  *  K  T  L  N  R  H  F  L  F  L  S  I  I  G  N  N  T  K  Q  H  L  I  A   : G  V  V  S  G  A  A  L  V  C  I  I  V  F  S  L  Y  K  L  Y  L  T  S  R  N  K  R  E  S  R  V  R  L  E  K  F  L  D  D  Y  K  A  I  R  P  T  R  Y  S  Y  A  D  I  K  K  V  T  D  D  F  N  E  K  L  G  E  G  S  Y  G  T  V  Y  K  G  K  L  S  S  D  I  Y  V  A  V  K  V  L  R  D  S  K  G  K  G  E  E  F  I  N  E  I  D  T  I  G  R  I  H  H  V  N  V  V  R  L  V  G  F  C  A  D  G  F  R  R  A  L  I  Y  E  Y  L  P  N  D  S  L  E  R  F  I  L  P  V  S  S  S  P  G  S  V  S  L  I  S  W  H  K  L  H  H  I  A  L  G  T  A  R  G  I  E  Y  L  H  Q  G  C  D  Q  Q  I  L  H  F  D  I  K  P  Q  N  I  L  L  D  H  N  L  N  P  K  I  C  D  F  G  L  A  K  L  C  S  K  E  K  S  A  V  T  M  T  A  A  R  G  T  I  G  Y  I  A  P  E  V  L  S  R  N  F  G  K  V  S  H  K  S  D  I  Y  S  F  G  M  L  L  L  E  M  V  G  G  R  I  N  M  D  A  K  T  N  N  H  S  K  V  N  S  L  E  W  I  Y  R  H  L  E  K  G  E  E  L  K  I  Q  I  E  E  E  G  D  G  R  I  V  R  K  L  A  I  V  G  L  W  C  I  Q  W  H  P  I  D  R  P  S  I  K  E  V  T  Q  M  L  E  G  D  G  S  H  L  N  L  S  P  N  P  F  M  A  T  D  K  P  K  L  N  A  S  S  H  G  E  D  L  D  V  I  L  E  I  E  *  H  F  K  I  I  S  K  R  I  A  K  V  F  Y  F  I  V  V  I  R  K  L  N  D  K  Y  V  D  L  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66387" stop="66318"/>
                    <exon start="66225" stop="65114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTLNRHFLFLSIIGNNTKQHLIAGVVSGAALVCIIVFSLYKLYLTSRNKRESRVRLEKFLDDYKAIRPTRYSYADIKKVTDDFNEKLGEGSYGTVYKGKLSSDIYVAVKVLRDSKGKGEEFINEIDTIGRIHHVNVVRLVGFCADGFRRALIYEYLPNDSLERFILPVSSSPGSVSLISWHKLHHIALGTARGIEYLHQGCDQQILHFDIKPQNILLDHNLNPKICDFGLAKLCSKEKSAVTMTAARGTIGYIAPEVLSRNFGKVSHKSDIYSFGMLLLEMVGGRINMDAKTNNHSKVNSLEWIYRHLEKGEELKIQIEEEGDGRIVRKLAIVGLWCIQWHPIDRPSIKEVTQMLEGDGSHLNLSPNPFMATDKPKLNASSHGEDLDVILEIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66597" e_stop="66432"/>
            <exon e_start="66347" e_stop="66318"/>
            <exon e_start="66225" e_stop="65021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66597" e_stop="66432" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.805">
            <gDNA_intron_boundary i_start="66431" i_stop="66348" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66347" e_stop="66318" e_length="30"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66317" i_stop="66226" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66225" e_stop="65021" e_length="1205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66597" stop="66432"/>
              <exon start="66347" stop="66318"/>
              <exon start="66225" stop="65980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66593" stop="66432"/>
              <exon start="66347" stop="66318"/>
              <exon start="66225" stop="65860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65894" stop="65465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65719" stop="65235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65705" stop="65021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTACCCATACTCAGACTCAACATTTGGTGAGAACATGCTACAGCTGAATTGGAATGTACCACTCTGTGGAAACTGTGAGTTCAAAGGAATGGATTGTGGTTTCAAGGACGGAACAAAGCTATTGGAAACTCATTGTTTCAATCGAAAAGATATAACCCGAACAG : GTAACAACACTAAGCAGCACTTGATTGCAG : GTGTAGTTTCAGGTGCAGCGCTTGTTTGCATTATTGTCTTCTCACTTTATAAGCTATACCTGACAAGTAGAAACAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGATGACTACAAGGCCATCAGACCAACACGATATTCTTATGCTGATATTAAGAAGGTAACAGATGATTTTAATGAAAAGTTAGGAGAAGGGAGTTATGGAACTGTATACAAAGGCAAACTTTCCAGTGACATCTATGTTGCAGTAAAAGTCCTACGCGATTCCAAGGGTAAAGGGGAAGAATTTATCAATGAAATTGATACGATTGGGAGAATCCACCATGTTAATGTGGTCCGTTTGGTTGGTTTTTGTGCTGATGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTAAGCTCAAGCCCGGGTAGTGTTTCACTCATCAGCTGGCACAAGCTTCACCATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGTGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTCTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCCTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGGTCACTATGACAGCTGCTAGGGGAACCATTGGTTACATTGCACCAGAAGTGTTATCAAGAAACTTTGGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATAGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATTAAAGATTCAGATAGAGGAAGAAGGAGATGGTAGAATTGTGAGAAAGTTAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCAATTGATAGGCCTTCAATCAAAGAAGTTACTCAGATGTTGGAAGGAGATGGAAGCCATCTCAACTTGTCCCCAAATCCTTTTATGGCTACTGATAAGCCTAAGTTAAATGCAAGTTCTCACGGTGAAGATCTAGACGTGATATTAGAAATTGAATAGCACTTCAAAATCATTTCTAAAAGAATTGCAAAAGTATTTTATTTCATAGTAGTGATCAGGAAGCTGAATGATAAATATGTAGACTTATTAATT</gDNA_template>
            <first_frame> Q  Y  P  Y  S  D  S  T  F  G  E  N  M  L  Q  L  N  W  N  V  P  L  C  G  N  C  E  F  K  G  M  D  C  G  F  K  D  G  T  K  L  L  E  T  H  C  F  N  R  K  D  I  T  R  T   : G  N  N  T  K  Q  H  L  I  A   : G  V  V  S  G  A  A  L  V  C  I  I  V  F  S  L  Y  K  L  Y  L  T  S  R  N  K  R  E  S  R  V  R  L  E  K  F  L  D  D  Y  K  A  I  R  P  T  R  Y  S  Y  A  D  I  K  K  V  T  D  D  F  N  E  K  L  G  E  G  S  Y  G  T  V  Y  K  G  K  L  S  S  D  I  Y  V  A  V  K  V  L  R  D  S  K  G  K  G  E  E  F  I  N  E  I  D  T  I  G  R  I  H  H  V  N  V  V  R  L  V  G  F  C  A  D  G  F  R  R  A  L  I  Y  E  Y  L  P  N  D  S  L  E  R  F  I  L  P  V  S  S  S  P  G  S  V  S  L  I  S  W  H  K  L  H  H  I  A  L  G  T  A  R  G  I  E  Y  L  H  Q  G  C  D  Q  Q  I  L  H  F  D  I  K  P  Q  N  I  L  L  D  H  N  L  N  P  K  I  C  D  F  G  L  A  K  L  C  S  K  E  K  S  A  V  T  M  T  A  A  R  G  T  I  G  Y  I  A  P  E  V  L  S  R  N  F  G  K  V  S  H  K  S  D  I  Y  S  F  G  M  L  L  L  E  M  V  G  G  R  I  N  M  D  A  K  T  N  N  H  S  K  V  N  S  L  E  W  I  Y  R  H  L  E  K  G  E  E  L  K  I  Q  I  E  E  E  G  D  G  R  I  V  R  K  L  A  I  V  G  L  W  C  I  Q  W  H  P  I  D  R  P  S  I  K  E  V  T  Q  M  L  E  G  D  G  S  H  L  N  L  S  P  N  P  F  M  A  T  D  K  P  K  L  N  A  S  S  H  G  E  D  L  D  V  I  L  E  I  E  *  H  F  K  I  I  S  K  R  I  A  K  V  F  Y  F  I  V  V  I  R  K  L  N  D  K  Y  V  D  L  L  I </first_frame>
            <second_frame>  S  T  H  T  Q  T  Q  H  L  V  R  T  C  Y  S  *  I  G  M  Y  H  S  V  E  T  V  S  S  K  E  W  I  V  V  S  R  T  E  Q  S  Y  W  K  L  I  V  S  I  E  K  I  *  P  E  Q  :  V  T  T  L  S  S  T  *  L  Q  :  V  *  F  Q  V  Q  R  L  F  A  L  L  S  S  H  F  I  S  Y  T  *  Q  V  E  T  K  E  R  V  E  L  D  L  K  S  F  W  M  T  T  R  P  S  D  Q  H  D  I  L  M  L  I  L  R  R  *  Q  M  I  L  M  K  S  *  E  K  G  V  M  E  L  Y  T  K  A  N  F  P  V  T  S  M  L  Q  *  K  S  Y  A  I  P  R  V  K  G  K  N  L  S  M  K  L  I  R  L  G  E  S  T  M  L  M  W  S  V  W  L  V  F  V  L  M  D  S  D  E  L  *  S  T  N  T  Y  Q  M  I  H  L  K  G  L  F  Y  Q  *  A  Q  A  R  V  V  F  H  S  S  A  G  T  S  F  T  I  L  L  W  V  L  Q  E  G  L  S  I  F  T  R  D  V  I  S  K  S  C  I  S  I  S  N  H  K  T  S  F  *  T  T  T  *  T  P  K  Y  V  I  L  A  *  P  N  C  V  L  K  K  K  V  R  S  L  *  Q  L  L  G  E  P  L  V  T  L  H  Q  K  C  Y  Q  E  T  L  V  K  F  L  I  S  L  I  F  I  A  L  G  C  S  C  *  K  W  L  V  G  G  *  I  W  M  L  R  R  I  T  I  A  K  *  I  L  W  N  G  Y  I  D  I  W  R  K  G  K  N  *  R  F  R  *  R  K  K  E  M  V  E  L  *  E  S  *  L  L  L  D  F  G  A  Y  S  G  I  Q  L  I  G  L  Q  S  K  K  L  L  R  C  W  K  E  M  E  A  I  S  T  C  P  Q  I  L  L  W  L  L  I  S  L  S  *  M  Q  V  L  T  V  K  I  *  T  *  Y  *  K  L  N  S  T  S  K  S  F  L  K  E  L  Q  K  Y  F  I  S  *  *  *  S  G  S  *  M  I  N  M  *  T  Y  *   </second_frame>
            <third_frame>   V  P  I  L  R  L  N  I  W  *  E  H  A  T  A  E  L  E  C  T  T  L  W  K  L  *  V  Q  R  N  G  L  W  F  Q  G  R  N  K  A  I  G  N  S  L  F  Q  S  K  R  Y  N  P  N  R :   *  Q  H  *  A  A  L  D  C  R :   C  S  F  R  C  S  A  C  L  H  Y  C  L  L  T  L  *  A  I  P  D  K  *  K  Q  K  R  E  S  S  *  T  *  K  V  F  G  *  L  Q  G  H  Q  T  N  T  I  F  L  C  *  Y  *  E  G  N  R  *  F  *  *  K  V  R  R  R  E  L  W  N  C  I  Q  R  Q  T  F  Q  *  H  L  C  C  S  K  S  P  T  R  F  Q  G  *  R  G  R  I  Y  Q  *  N  *  Y  D  W  E  N  P  P  C  *  C  G  P  F  G  W  F  L  C  *  W  I  Q  T  S  S  D  L  R  I  P  T  K  *  F  T  *  K  V  Y  F  T  S  K  L  K  P  G  *  C  F  T  H  Q  L  A  Q  A  S  P  Y  C  S  G  Y  C  K  R  D  *  V  S  S  P  G  M  *  S  A  N  P  A  F  R  Y  Q  T  T  K  H  P  S  R  P  Q  L  E  P  Q  N  M  *  F  W  P  S  Q  T  V  F  *  R  K  K  C  G  H  Y  D  S  C  *  G  N  H  W  L  H  C  T  R  S  V  I  K  K  L  W  *  S  F  S  *  V  *  Y  L  *  L  W  D  A  L  V  R  N  G  W  W  E  D  K  Y  G  C  *  D  E  *  P  *  Q  S  E  F  F  G  M  D  I  *  T  F  G  E  R  G  R  I  K  D  S  D  R  G  R  R  R  W  *  N  C  E  K  V  S  Y  C  W  T  L  V  H  T  V  A  S  N  *  *  A  F  N  Q  R  S  Y  S  D  V  G  R  R  W  K  P  S  Q  L  V  P  K  S  F  Y  G  Y  *  *  A  *  V  K  C  K  F  S  R  *  R  S  R  R  D  I  R  N  *  I  A  L  Q  N  H  F  *  K  N  C  K  S  I  L  F  H  S  S  D  Q  E  A  E  *  *  I  C  R  L  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66597" stop="66432"/>
                    <exon start="66347" stop="66318"/>
                    <exon start="66225" stop="65114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYPYSDSTFGENMLQLNWNVPLCGNCEFKGMDCGFKDGTKLLETHCFNRKDITRTGNNTKQHLIAGVVSGAALVCIIVFSLYKLYLTSRNKRESRVRLEKFLDDYKAIRPTRYSYADIKKVTDDFNEKLGEGSYGTVYKGKLSSDIYVAVKVLRDSKGKGEEFINEIDTIGRIHHVNVVRLVGFCADGFRRALIYEYLPNDSLERFILPVSSSPGSVSLISWHKLHHIALGTARGIEYLHQGCDQQILHFDIKPQNILLDHNLNPKICDFGLAKLCSKEKSAVTMTAARGTIGYIAPEVLSRNFGKVSHKSDIYSFGMLLLEMVGGRINMDAKTNNHSKVNSLEWIYRHLEKGEELKIQIEEEGDGRIVRKLAIVGLWCIQWHPIDRPSIKEVTQMLEGDGSHLNLSPNPFMATDKPKLNASSHGEDLDVILEIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="66958" PGL_stop="66755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66958" e_stop="66755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="66958" e_stop="66755" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66958" stop="66755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACATTGTGGCTATGATCCTGGCTTTGAACTACACTGTAACACTAAAGGTGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTTGGTGTTGAAAATATTGATTATGTCTCACAGCAAATTCACCTTTATGATCCTGACCAGTGCATAGCAGCCAAGCTACCAAAACTGAATTTGTCACAATCTAATTTCACAAATGATGA</gDNA_template>
            <first_frame> K  T  L  W  L  *  S  W  L  *  T  T  L  *  H  *  R  *  H  H  P  *  A  S  L  L  C  S  L  W  C  *  K  Y  *  L  C  L  T  A  N  S  P  L  *  S  *  P  V  H  S  S  Q  A  T  K  T  E  F  V  T  I  *  F  H  K  *  * </first_frame>
            <second_frame>  K  H  C  G  Y  D  P  G  F  E  L  H  C  N  T  K  G  D  T  I  L  E  L  P  S  S  V  H  F  G  V  E  N  I  D  Y  V  S  Q  Q  I  H  L  Y  D  P  D  Q  C  I  A  A  K  L  P  K  L  N  L  S  Q  S  N  F  T  N  D   </second_frame>
            <third_frame>   N  I  V  A  M  I  L  A  L  N  Y  T  V  T  L  K  V  T  P  S  L  S  F  P  P  L  F  T  L  V  L  K  I  L  I  M  S  H  S  K  F  T  F  M  I  L  T  S  A  *  Q  P  S  Y  Q  N  *  I  C  H  N  L  I  S  Q  M  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66957" stop="66757"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHCGYDPGFELHCNTKGDTILELPSSVHFGVENIDYVSQQIHLYDPDQCIAAKLPKLNLSQSNFTND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71956" PGL_stop="71093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71956" e_stop="71093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="71956" e_stop="71093" e_length="864"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71956" stop="71204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71955" stop="71442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71952" stop="71093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71924" stop="71285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71574" stop="71094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTGTGAGGTCTCAGCTGTTGTAGTACAGAAATGTCTAAGGATACCTCTCTGCTAAAATATTCAACATTAATCCTCATCTTTCTGCAAACATGCAATGCTTGGAAGATGAAGCCCGATTACTGTTATCCGAAGACCCCTTCTGCTTGTGGTCATATCCGAGACATCAGCTACCCTTTTCACTTAAACAGTGACCCAGAAATTTGTGGAGATGATCCGAAATTTGAATTTAGTTGTGAAGATAACCAAACGGTTATGTCGATCCTCTCCAAGAAGCTGTATGTGCAAGCCATCAACTATAATAGTAAGACAATTCACCTGGTAGATCCAGCTTTACAAACACAAGATGATCTATGCTCTTTCAGTCCTCAGCTTCTGTTCTTCGACCAATCCGATACAATCTTCCGATCATACTATAGTGGGCTTAGATCAGCAGAGCCCATTTTCATGTTCAACTGTCCATCTGCTGTTAATAGTTCTTCGACATTTCTGGAAATTAGTGGCTGCAAATTAAGCAGGTACACTTATTTAAAGATTGGAGAAACGAAAGTCTCTGAAGTCAGCCATGGATGCAGAATGGAATTTATAGCCATGACCTCATTGCCTGATATTAAAAACGCAGAGAATAACATTTCCCATTCTGATTTGAGCTTTTCTTTATTCGCTCTCCGCGTGATTTTGAAGAGTAAGGACAATCTTCAGTTATATAGGCTCTGCTTCTTAATAATCATTTCTTTTCCATCCTAACAAATTAGGAAAACAATGGATATATTCACTCACTACAATTTCATTTCTTCATGTCTTTGTAGTTGTGCTTGATTGGATTCGATGTGAGGACTCAAACTTTTCTCTACATAGACTTTT</gDNA_template>
            <first_frame> *  L  *  G  L  S  C  C  S  T  E  M  S  K  D  T  S  L  L  K  Y  S  T  L  I  L  I  F  L  Q  T  C  N  A  W  K  M  K  P  D  Y  C  Y  P  K  T  P  S  A  C  G  H  I  R  D  I  S  Y  P  F  H  L  N  S  D  P  E  I  C  G  D  D  P  K  F  E  F  S  C  E  D  N  Q  T  V  M  S  I  L  S  K  K  L  Y  V  Q  A  I  N  Y  N  S  K  T  I  H  L  V  D  P  A  L  Q  T  Q  D  D  L  C  S  F  S  P  Q  L  L  F  F  D  Q  S  D  T  I  F  R  S  Y  Y  S  G  L  R  S  A  E  P  I  F  M  F  N  C  P  S  A  V  N  S  S  S  T  F  L  E  I  S  G  C  K  L  S  R  Y  T  Y  L  K  I  G  E  T  K  V  S  E  V  S  H  G  C  R  M  E  F  I  A  M  T  S  L  P  D  I  K  N  A  E  N  N  I  S  H  S  D  L  S  F  S  L  F  A  L  R  V  I  L  K  S  K  D  N  L  Q  L  Y  R  L  C  F  L  I  I  I  S  F  P  S  *  Q  I  R  K  T  M  D  I  F  T  H  Y  N  F  I  S  S  C  L  C  S  C  A  *  L  D  S  M  *  G  L  K  L  F  S  T  *  T  F </first_frame>
            <second_frame>  N  C  E  V  S  A  V  V  V  Q  K  C  L  R  I  P  L  C  *  N  I  Q  H  *  S  S  S  F  C  K  H  A  M  L  G  R  *  S  P  I  T  V  I  R  R  P  L  L  L  V  V  I  S  E  T  S  A  T  L  F  T  *  T  V  T  Q  K  F  V  E  M  I  R  N  L  N  L  V  V  K  I  T  K  R  L  C  R  S  S  P  R  S  C  M  C  K  P  S  T  I  I  V  R  Q  F  T  W  *  I  Q  L  Y  K  H  K  M  I  Y  A  L  S  V  L  S  F  C  S  S  T  N  P  I  Q  S  S  D  H  T  I  V  G  L  D  Q  Q  S  P  F  S  C  S  T  V  H  L  L  L  I  V  L  R  H  F  W  K  L  V  A  A  N  *  A  G  T  L  I  *  R  L  E  K  R  K  S  L  K  S  A  M  D  A  E  W  N  L  *  P  *  P  H  C  L  I  L  K  T  Q  R  I  T  F  P  I  L  I  *  A  F  L  Y  S  L  S  A  *  F  *  R  V  R  T  I  F  S  Y  I  G  S  A  S  *  *  S  F  L  F  H  P  N  K  L  G  K  Q  W  I  Y  S  L  T  T  I  S  F  L  H  V  F  V  V  V  L  D  W  I  R  C  E  D  S  N  F  S  L  H  R  L   </second_frame>
            <third_frame>   I  V  R  S  Q  L  L  *  Y  R  N  V  *  G  Y  L  S  A  K  I  F  N  I  N  P  H  L  S  A  N  M  Q  C  L  E  D  E  A  R  L  L  L  S  E  D  P  F  C  L  W  S  Y  P  R  H  Q  L  P  F  S  L  K  Q  *  P  R  N  L  W  R  *  S  E  I  *  I  *  L  *  R  *  P  N  G  Y  V  D  P  L  Q  E  A  V  C  A  S  H  Q  L  *  *  *  D  N  S  P  G  R  S  S  F  T  N  T  R  *  S  M  L  F  Q  S  S  A  S  V  L  R  P  I  R  Y  N  L  P  I  I  L  *  W  A  *  I  S  R  A  H  F  H  V  Q  L  S  I  C  C  *  *  F  F  D  I  S  G  N  *  W  L  Q  I  K  Q  V  H  L  F  K  D  W  R  N  E  S  L  *  S  Q  P  W  M  Q  N  G  I  Y  S  H  D  L  I  A  *  Y  *  K  R  R  E  *  H  F  P  F  *  F  E  L  F  F  I  R  S  P  R  D  F  E  E  *  G  Q  S  S  V  I  *  A  L  L  L  N  N  H  F  F  S  I  L  T  N  *  E  N  N  G  Y  I  H  S  L  Q  F  H  F  F  M  S  L  *  L  C  L  I  G  F  D  V  R  T  Q  T  F  L  Y  I  D  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71947" stop="71210"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSCCSTEMSKDTSLLKYSTLILIFLQTCNAWKMKPDYCYPKTPSACGHIRDISYPFHLNSDPEICGDDPKFEFSCEDNQTVMSILSKKLYVQAINYNSKTIHLVDPALQTQDDLCSFSPQLLFFDQSDTIFRSYYSGLRSAEPIFMFNCPSAVNSSSTFLEISGCKLSRYTYLKIGETKVSEVSHGCRMEFIAMTSLPDIKNAENNISHSDLSFSLFALRVILKSKDNLQLYRLCFLIIISFPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="73576" PGL_stop="72626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73576" e_stop="72626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="73576" e_stop="72626" e_length="951"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73576" stop="72983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73513" stop="73328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73468" stop="72912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73440" stop="73035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73428" stop="72626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAACGTGGTCCTCTTACTTGGTTTTTGTGCTGACGGATTCAGACGAGCTCTGATCTACGAATACCTACCAAATGATTCACTTGAAAGGTTTATTTTACCAGTGAGCTCAAGTACGGGTAGTGTCTCAGTCATCAGCTGGAACAAGCTTCAACATATTGCTCTGGGTACTGCAAGAGGGATTGAGTATCTTCACCAGGGATGCGATCAGCAAATCCTGCATTTCGATATCAAACCACAAAACATCCTTTTAGACCACAACTTGAACCCCAAAATATGTGATTTTGGCTTAGCCAAACTGTGTTCTAAAGAAAAAAGTGCGATCACTATGACAGCTGCTAGGGGTACCATTGGTTACATTGCACCAGAAGTGTTGTCAAGAAACTTTTGTAAAGTTTCTCATAAGTCTGATATTTATAGCTTTGGGATGCTCTTGTTAGAAATGGTTGGTGGGAGGATAAATATGGATGCTAAGACGAATAACCATTGCAAAGTGAATTCTTTGGAATGGATATATAGACATTTGGAGAAAGGGGAAGAATCGAAGATTCGGATAGAGGAAGAAGGAGATGCTACAATTGTGAGAAAAATAGCTATTGTTGGACTTTGGTGCATACAGTGGCATCCCGTTGATAGGCCTTCAATAAAAGAAGTTACTCAGATGCTGGAAGGAGATGGGAGCCATCTTAACTTGTCCCCAAATCCTTTTATGGCTACTGATAAGCCTAAGTTAAATGCAAGTCCTCACGGTGAAGATCTAGACGTGATATTAGAAATTAAATAACACTTCAAAGTCATTTGTATAATGAAAAGGAATTAGTGTAAGAATTGCAAAAGTATTTTGTTTCATAGTAATAAGGAAGCTGAATGATACACATTTAGTCTTATTTCTCGATTTGTATGCATTAGATCCTTACATTGAAACCAAAAGAAATGTCAGTTGTTTTCTCAAG</gDNA_template>
            <first_frame> L  T  W  S  S  Y  L  V  F  V  L  T  D  S  D  E  L  *  S  T  N  T  Y  Q  M  I  H  L  K  G  L  F  Y  Q  *  A  Q  V  R  V  V  S  Q  S  S  A  G  T  S  F  N  I  L  L  W  V  L  Q  E  G  L  S  I  F  T  R  D  A  I  S  K  S  C  I  S  I  S  N  H  K  T  S  F  *  T  T  T  *  T  P  K  Y  V  I  L  A  *  P  N  C  V  L  K  K  K  V  R  S  L  *  Q  L  L  G  V  P  L  V  T  L  H  Q  K  C  C  Q  E  T  F  V  K  F  L  I  S  L  I  F  I  A  L  G  C  S  C  *  K  W  L  V  G  G  *  I  W  M  L  R  R  I  T  I  A  K  *  I  L  W  N  G  Y  I  D  I  W  R  K  G  K  N  R  R  F  G  *  R  K  K  E  M  L  Q  L  *  E  K  *  L  L  L  D  F  G  A  Y  S  G  I  P  L  I  G  L  Q  *  K  K  L  L  R  C  W  K  E  M  G  A  I  L  T  C  P  Q  I  L  L  W  L  L  I  S  L  S  *  M  Q  V  L  T  V  K  I  *  T  *  Y  *  K  L  N  N  T  S  K  S  F  V  *  *  K  G  I  S  V  R  I  A  K  V  F  C  F  I  V  I  R  K  L  N  D  T  H  L  V  L  F  L  D  L  Y  A  L  D  P  Y  I  E  T  K  R  N  V  S  C  F  L  K </first_frame>
            <second_frame>  *  R  G  P  L  T  W  F  L  C  *  R  I  Q  T  S  S  D  L  R  I  P  T  K  *  F  T  *  K  V  Y  F  T  S  E  L  K  Y  G  *  C  L  S  H  Q  L  E  Q  A  S  T  Y  C  S  G  Y  C  K  R  D  *  V  S  S  P  G  M  R  S  A  N  P  A  F  R  Y  Q  T  T  K  H  P  F  R  P  Q  L  E  P  Q  N  M  *  F  W  L  S  Q  T  V  F  *  R  K  K  C  D  H  Y  D  S  C  *  G  Y  H  W  L  H  C  T  R  S  V  V  K  K  L  L  *  S  F  S  *  V  *  Y  L  *  L  W  D  A  L  V  R  N  G  W  W  E  D  K  Y  G  C  *  D  E  *  P  L  Q  S  E  F  F  G  M  D  I  *  T  F  G  E  R  G  R  I  E  D  S  D  R  G  R  R  R  C  Y  N  C  E  K  N  S  Y  C  W  T  L  V  H  T  V  A  S  R  *  *  A  F  N  K  R  S  Y  S  D  A  G  R  R  W  E  P  S  *  L  V  P  K  S  F  Y  G  Y  *  *  A  *  V  K  C  K  S  S  R  *  R  S  R  R  D  I  R  N  *  I  T  L  Q  S  H  L  Y  N  E  K  E  L  V  *  E  L  Q  K  Y  F  V  S  *  *  *  G  S  *  M  I  H  I  *  S  Y  F  S  I  C  M  H  *  I  L  T  L  K  P  K  E  M  S  V  V  F  S   </second_frame>
            <third_frame>   N  V  V  L  L  L  G  F  C  A  D  G  F  R  R  A  L  I  Y  E  Y  L  P  N  D  S  L  E  R  F  I  L  P  V  S  S  S  T  G  S  V  S  V  I  S  W  N  K  L  Q  H  I  A  L  G  T  A  R  G  I  E  Y  L  H  Q  G  C  D  Q  Q  I  L  H  F  D  I  K  P  Q  N  I  L  L  D  H  N  L  N  P  K  I  C  D  F  G  L  A  K  L  C  S  K  E  K  S  A  I  T  M  T  A  A  R  G  T  I  G  Y  I  A  P  E  V  L  S  R  N  F  C  K  V  S  H  K  S  D  I  Y  S  F  G  M  L  L  L  E  M  V  G  G  R  I  N  M  D  A  K  T  N  N  H  C  K  V  N  S  L  E  W  I  Y  R  H  L  E  K  G  E  E  S  K  I  R  I  E  E  E  G  D  A  T  I  V  R  K  I  A  I  V  G  L  W  C  I  Q  W  H  P  V  D  R  P  S  I  K  E  V  T  Q  M  L  E  G  D  G  S  H  L  N  L  S  P  N  P  F  M  A  T  D  K  P  K  L  N  A  S  P  H  G  E  D  L  D  V  I  L  E  I  K  *  H  F  K  V  I  C  I  M  K  R  N  *  C  K  N  C  K  S  I  L  F  H  S  N  K  E  A  E  *  Y  T  F  S  L  I  S  R  F  V  C  I  R  S  L  H  *  N  Q  K  K  C  Q  L  F  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73574" stop="72795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVVLLLGFCADGFRRALIYEYLPNDSLERFILPVSSSTGSVSVISWNKLQHIALGTARGIEYLHQGCDQQILHFDIKPQNILLDHNLNPKICDFGLAKLCSKEKSAITMTAARGTIGYIAPEVLSRNFCKVSHKSDIYSFGMLLLEMVGGRINMDAKTNNHCKVNSLEWIYRHLEKGEESKIRIEEEGDATIVRKIAIVGLWCIQWHPVDRPSIKEVTQMLEGDGSHLNLSPNPFMATDKPKLNASPHGEDLDVILEIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="74768" PGL_stop="73795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74768" e_stop="74114"/>
            <exon e_start="74027" e_stop="73998"/>
            <exon e_start="73906" e_stop="73795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.119" e_score="0.957"/>
          <exon-intron don_prob="0.988" acc_prob="0.980" e_score="0.900"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="74768" e_stop="74114" e_length="655"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.119">
            <gDNA_intron_boundary i_start="74113" i_stop="74028" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="74027" e_stop="73998" e_length="30"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.980">
            <gDNA_intron_boundary i_start="73997" i_stop="73907" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="73906" e_stop="73795" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74768" stop="74114"/>
              <exon start="74027" stop="73998"/>
              <exon start="73906" stop="73795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74768" stop="74214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74767" stop="74240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGTCCATCTTACTTTTCTTGCTATTTATCCCATCGCTTAGCTTAGGACAGAGACTAGAGGGCTGTGAGGATTCTTGGTGCAAGAGTCATGGTCCCATCGTTCATTTTCCGTTCAGACTCAGTCATCAGCCAAAACATTGTGGCTATCCTGGCTTTGAACTACACTGTAACACTAAAGGTGACACCATCCTTGAGCTTCCCTCCTCTGTTCACTTTGGTGTTGAAAAGATTGATTATGTCTCACAGAAAATTCACCTTTATGATCCTGACCAGTGCTTACCAGCCAAGCTACCAAAACTGAATTTTTCACAATTCAATTTGAAAAATGAATACTTACCCATGGTCCTATTAAATTGTTCCGCACCATTACCAGATACTATTCATGACTTCGTTCCTTGTCTTAGTTCTTCTGCTTACAAAGTTTATGCTGTTTATGAGTTTGATCACCTCAACCTCTTCTTGTCTGAGCCTTGCACAAAAATTCATCACTACCCTTACGCATGGTACACATTTAGGGAGAACAAACTGCAGCTGAATTGGTCTATACCACTCTGTAGGAGCTGTGAGTTCAAAGGAATGGATTGTGGCTTCAAGGATGAAATAAAACAATTGGAAACTCAATTGTTTCAATCGAACAGCTATAACCCCAACAG : ATATGAAATCTAAGATGTCCTTGGTTGCAG : GTGTAGTTTTAGGTACAGCGCTTGTTTGCATTATTGCCTTCTTACGTTATACGCTATATTTGACAAGTAGAAATAAAAGAGAGAGTCGAGTTAGACTTGAAAAGTTTTTGGA</gDNA_template>
            <first_frame> K  C  P  S  Y  F  S  C  Y  L  S  H  R  L  A  *  D  R  D  *  R  A  V  R  I  L  G  A  R  V  M  V  P  S  F  I  F  R  S  D  S  V  I  S  Q  N  I  V  A  I  L  A  L  N  Y  T  V  T  L  K  V  T  P  S  L  S  F  P  P  L  F  T  L  V  L  K  R  L  I  M  S  H  R  K  F  T  F  M  I  L  T  S  A  Y  Q  P  S  Y  Q  N  *  I  F  H  N  S  I  *  K  M  N  T  Y  P  W  S  Y  *  I  V  P  H  H  Y  Q  I  L  F  M  T  S  F  L  V  L  V  L  L  L  T  K  F  M  L  F  M  S  L  I  T  S  T  S  S  C  L  S  L  A  Q  K  F  I  T  T  L  T  H  G  T  H  L  G  R  T  N  C  S  *  I  G  L  Y  H  S  V  G  A  V  S  S  K  E  W  I  V  A  S  R  M  K  *  N  N  W  K  L  N  C  F  N  R  T  A  I  T  P  T   : D  M  K  S  K  M  S  L  V  A   : G  V  V  L  G  T  A  L  V  C  I  I  A  F  L  R  Y  T  L  Y  L  T  S  R  N  K  R  E  S  R  V  R  L  E  K  F  L   </first_frame>
            <second_frame>  N  V  H  L  T  F  L  A  I  Y  P  I  A  *  L  R  T  E  T  R  G  L  *  G  F  L  V  Q  E  S  W  S  H  R  S  F  S  V  Q  T  Q  S  S  A  K  T  L  W  L  S  W  L  *  T  T  L  *  H  *  R  *  H  H  P  *  A  S  L  L  C  S  L  W  C  *  K  D  *  L  C  L  T  E  N  S  P  L  *  S  *  P  V  L  T  S  Q  A  T  K  T  E  F  F  T  I  Q  F  E  K  *  I  L  T  H  G  P  I  K  L  F  R  T  I  T  R  Y  Y  S  *  L  R  S  L  S  *  F  F  C  L  Q  S  L  C  C  L  *  V  *  S  P  Q  P  L  L  V  *  A  L  H  K  N  S  S  L  P  L  R  M  V  H  I  *  G  E  Q  T  A  A  E  L  V  Y  T  T  L  *  E  L  *  V  Q  R  N  G  L  W  L  Q  G  *  N  K  T  I  G  N  S  I  V  S  I  E  Q  L  *  P  Q  Q  :  I  *  N  L  R  C  P  W  L  Q  :  V  *  F  *  V  Q  R  L  F  A  L  L  P  S  Y  V  I  R  Y  I  *  Q  V  E  I  K  E  R  V  E  L  D  L  K  S  F  W  </second_frame>
            <third_frame>   M  S  I  L  L  F  L  L  F  I  P  S  L  S  L  G  Q  R  L  E  G  C  E  D  S  W  C  K  S  H  G  P  I  V  H  F  P  F  R  L  S  H  Q  P  K  H  C  G  Y  P  G  F  E  L  H  C  N  T  K  G  D  T  I  L  E  L  P  S  S  V  H  F  G  V  E  K  I  D  Y  V  S  Q  K  I  H  L  Y  D  P  D  Q  C  L  P  A  K  L  P  K  L  N  F  S  Q  F  N  L  K  N  E  Y  L  P  M  V  L  L  N  C  S  A  P  L  P  D  T  I  H  D  F  V  P  C  L  S  S  S  A  Y  K  V  Y  A  V  Y  E  F  D  H  L  N  L  F  L  S  E  P  C  T  K  I  H  H  Y  P  Y  A  W  Y  T  F  R  E  N  K  L  Q  L  N  W  S  I  P  L  C  R  S  C  E  F  K  G  M  D  C  G  F  K  D  E  I  K  Q  L  E  T  Q  L  F  Q  S  N  S  Y  N  P  N  R :   Y  E  I  *  D  V  L  G  C  R :   C  S  F  R  Y  S  A  C  L  H  Y  C  L  L  T  L  Y  A  I  F  D  K  *  K  *  K  R  E  S  S  *  T  *  K  V  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74766" stop="74114"/>
                    <exon start="74027" stop="74015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSILLFLLFIPSLSLGQRLEGCEDSWCKSHGPIVHFPFRLSHQPKHCGYPGFELHCNTKGDTILELPSSVHFGVEKIDYVSQKIHLYDPDQCLPAKLPKLNFSQFNLKNEYLPMVLLNCSAPLPDTIHDFVPCLSSSAYKVYAVYEFDHLNLFLSEPCTKIHHYPYAWYTFRENKLQLNWSIPLCRSCEFKGMDCGFKDEIKQLETQLFQSNSYNPNRYEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="77301" PGL_stop="79344"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77301" e_stop="77960"/>
            <exon e_start="78525" e_stop="79344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.886" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77301" e_stop="77960" e_length="660"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.886">
            <gDNA_intron_boundary i_start="77961" i_stop="78524" i_length="564"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="78525" e_stop="79344" e_length="820"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77301" stop="77960"/>
              <exon start="78525" stop="78616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77301" stop="77960"/>
              <exon start="78525" stop="78614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77302" stop="77945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77381" stop="77934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78530" stop="79344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78557" stop="79344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCATCTCTGAAACATGCTATGCTAGGAATAGCGAATTTCACTACTATGTCCGTTCTGCTTGTGGAAATATCCCTGACATAAGTTACCCTTTTCGTTTAAAGATCGACTCAAAATATAGTTACCTTTTCAGCTCAAATACCGGTTCAAAGCTATTTACAGAATATGAATTAGCTTGTGAAGGTAACCAAACGGTTGTATGGTTATTCTCCAAGAAGTTGCACGTTCAAGCCATCAATTATGTTAATCACACAACTCCTGTTGTAGATCCAACTTTACAAAAACAAGATTTATGCTCTCTATTACCTCAGCCTTCAACAATACATGAATAGTTCGCGTTTTCATCCATATTATAATTACACTAGTAATGGATCACAGAGTAATAGCAGAGCCTATCTTCATATTCAACTGTCCGTTTGCTGTTAACAATTCAACATTAGTGGCTGCAAATTAAGCTGGTACACTTATTTAAAGATTGGAGAAATGAGTGTATCTGAAGTCACCGATGGATGTGCAGAGTGGAATTTATAGCCATGACCTCTTGGCCTAATATTAAAAATGGCAACAATATTTCCCTTTATGATCTTCATCAAGCATTCATCGAAGGGTTTGAGCTAACTTATCATCTGAAACTGGAAATCATAGAAACGATTCATTCAA : TGTATTGGGAGCAAAATGTGTGATTGGCCTACCGTTCATAATTGAATTTCTGGTGTACATCAGCACCAGTCAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTGTTGTTGGAGTGGCTCGAGGAATTGGATATTTGCATCGAGGCTGTGATGTACGAATTTTGCATTTTGACATCAAGCCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGATTTTGGGCTTGCAAAATTATATCCAACAGATATAAGCATTGTGAATCTCACAGCTGCTCGTGGAACAATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATTGGAGTAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTAATGGAAATGCTGGACTTGAAGAGACATGAAGGTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGGAAGGAAATTGTTGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGTTGACTTTAGTTACATTTATGGTGCATACAAACAAATCCGATACAACACCCTTCGATGAGTAAAGTTTACAAATGCTGGAAGGTGAAATTGAAGTGCTAGAAGCACCTCCTCAGCCTCTTCAATCTCCACTATTGTTTATCAGATGATGGGAAGTTCTATGACATTTTCGTCTGATTCCATGGCTTTGTTAGATAATTCTGCTAATAATACCGTATCAAATTAGACATATGTTATGAGTGATTCATAACTAATTTTATGTTTCTCATGAAGTTTGT</gDNA_template>
            <first_frame> *  S  S  L  K  H  A  M  L  G  I  A  N  F  T  T  M  S  V  L  L  V  E  I  S  L  T  *  V  T  L  F  V  *  R  S  T  Q  N  I  V  T  F  S  A  Q  I  P  V  Q  S  Y  L  Q  N  M  N  *  L  V  K  V  T  K  R  L  Y  G  Y  S  P  R  S  C  T  F  K  P  S  I  M  L  I  T  Q  L  L  L  *  I  Q  L  Y  K  N  K  I  Y  A  L  Y  Y  L  S  L  Q  Q  Y  M  N  S  S  R  F  H  P  Y  Y  N  Y  T  S  N  G  S  Q  S  N  S  R  A  Y  L  H  I  Q  L  S  V  C  C  *  Q  F  N  I  S  G  C  K  L  S  W  Y  T  Y  L  K  I  G  E  M  S  V  S  E  V  T  D  G  C  A  E  W  N  L  *  P  *  P  L  G  L  I  L  K  M  A  T  I  F  P  F  M  I  F  I  K  H  S  S  K  G  L  S  *  L  I  I  *  N  W  K  S  *  K  R  F  I  Q  :  C  I  G  S  K  M  C  D  W  P  T  V  H  N  *  I  S  G  V  H  Q  H  Q  S  R  R  K  S  S  V  K  L  A  E  E  V  *  H  C  C  W  S  G  S  R  N  W  I  F  A  S  R  L  *  C  T  N  F  A  F  *  H  Q  A  T  Q  H  S  F  G  *  E  F  H  S  K  D  F  *  F  W  A  C  K  I  I  S  N  R  Y  K  H  C  E  S  H  S  C  S  W  N  N  W  L  C  S  S  R  V  D  Q  Q  K  H  W  S  N  L  L  Q  S  *  C  L  Q  L  W  N  A  A  N  G  N  A  G  L  E  E  T  *  R  C  K  *  R  E  F  Q  P  I  F  S  L  L  Y  L  R  *  V  Q  Q  G  E  G  N  C  C  G  *  R  S  K  *  *  *  K  E  D  G  *  K  V  D  F  S  Y  I  Y  G  A  Y  K  Q  I  R  Y  N  T  L  R  *  V  K  F  T  N  A  G  R  *  N  *  S  A  R  S  T  S  S  A  S  S  I  S  T  I  V  Y  Q  M  M  G  S  S  M  T  F  S  S  D  S  M  A  L  L  D  N  S  A  N  N  T  V  S  N  *  T  Y  V  M  S  D  S  *  L  I  L  C  F  S  *  S  L  </first_frame>
            <second_frame>  D  H  L  *  N  M  L  C  *  E  *  R  I  S  L  L  C  P  F  C  L  W  K  Y  P  *  H  K  L  P  F  S  F  K  D  R  L  K  I  *  L  P  F  Q  L  K  Y  R  F  K  A  I  Y  R  I  *  I  S  L  *  R  *  P  N  G  C  M  V  I  L  Q  E  V  A  R  S  S  H  Q  L  C  *  S  H  N  S  C  C  R  S  N  F  T  K  T  R  F  M  L  S  I  T  S  A  F  N  N  T  *  I  V  R  V  F  I  H  I  I  I  T  L  V  M  D  H  R  V  I  A  E  P  I  F  I  F  N  C  P  F  A  V  N  N  S  T  L  V  A  A  N  *  A  G  T  L  I  *  R  L  E  K  *  V  Y  L  K  S  P  M  D  V  Q  S  G  I  Y  S  H  D  L  L  A  *  Y  *  K  W  Q  Q  Y  F  P  L  *  S  S  S  S  I  H  R  R  V  *  A  N  L  S  S  E  T  G  N  H  R  N  D  S  F  N :   V  L  G  A  K  C  V  I  G  L  P  F  I  I  E  F  L  V  Y  I  S  T  S  Q  E  G  S  P  L  L  S  W  Q  R  K  Y  D  I  V  V  G  V  A  R  G  I  G  Y  L  H  R  G  C  D  V  R  I  L  H  F  D  I  K  P  H  N  I  L  L  D  E  N  F  I  P  K  I  S  D  F  G  L  A  K  L  Y  P  T  D  I  S  I  V  N  L  T  A  A  R  G  T  I  G  Y  V  A  P  E  L  I  S  R  S  I  G  V  I  S  Y  K  A  D  V  Y  S  F  G  M  L  L  M  E  M  L  D  L  K  R  H  E  G  A  N  E  E  N  S  S  Q  Y  F  P  Y  Y  I  Y  D  K  F  N  K  G  K  E  I  V  V  D  E  E  A  N  D  D  E  K  K  M  A  R  K  L  T  L  V  T  F  M  V  H  T  N  K  S  D  T  T  P  F  D  E  *  S  L  Q  M  L  E  G  E  I  E  V  L  E  A  P  P  Q  P  L  Q  S  P  L  L  F  I  R  *  W  E  V  L  *  H  F  R  L  I  P  W  L  C  *  I  I  L  L  I  I  P  Y  Q  I  R  H  M  L  *  V  I  H  N  *  F  Y  V  S  H  E  V  C </second_frame>
            <third_frame>   I  I  S  E  T  C  Y  A  R  N  S  E  F  H  Y  Y  V  R  S  A  C  G  N  I  P  D  I  S  Y  P  F  R  L  K  I  D  S  K  Y  S  Y  L  F  S  S  N  T  G  S  K  L  F  T  E  Y  E  L  A  C  E  G  N  Q  T  V  V  W  L  F  S  K  K  L  H  V  Q  A  I  N  Y  V  N  H  T  T  P  V  V  D  P  T  L  Q  K  Q  D  L  C  S  L  L  P  Q  P  S  T  I  H  E  *  F  A  F  S  S  I  L  *  L  H  *  *  W  I  T  E  *  *  Q  S  L  S  S  Y  S  T  V  R  L  L  L  T  I  Q  H  *  W  L  Q  I  K  L  V  H  L  F  K  D  W  R  N  E  C  I  *  S  H  R  W  M  C  R  V  E  F  I  A  M  T  S  W  P  N  I  K  N  G  N  N  I  S  L  Y  D  L  H  Q  A  F  I  E  G  F  E  L  T  Y  H  L  K  L  E  I  I  E  T  I  H  S   : M  Y  W  E  Q  N  V  *  L  A  Y  R  S  *  L  N  F  W  C  T  S  A  P  V  K  K  E  V  L  C  *  V  G  R  G  S  M  T  L  L  L  E  W  L  E  E  L  D  I  C  I  E  A  V  M  Y  E  F  C  I  L  T  S  S  H  T  T  F  F  W  M  R  I  S  F  Q  R  F  L  I  L  G  L  Q  N  Y  I  Q  Q  I  *  A  L  *  I  S  Q  L  L  V  E  Q  L  A  M  *  L  Q  S  *  S  A  E  A  L  E  *  S  L  T  K  L  M  F  T  A  L  E  C  C  *  W  K  C  W  T  *  R  D  M  K  V  Q  M  K  R  I  P  A  N  I  F  L  I  I  F  T  I  S  S  T  R  G  R  K  L  L  W  M  K  K  Q  M  M  M  K  R  R  W  L  E  S  *  L  *  L  H  L  W  C  I  Q  T  N  P  I  Q  H  P  S  M  S  K  V  Y  K  C  W  K  V  K  L  K  C  *  K  H  L  L  S  L  F  N  L  H  Y  C  L  S  D  D  G  K  F  Y  D  I  F  V  *  F  H  G  F  V  R  *  F  C  *  *  Y  R  I  K  L  D  I  C  Y  E  *  F  I  T  N  F  M  F  L  M  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77914" stop="77960"/>
                    <exon start="78525" stop="79131"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANLSSETGNHRNDSFNVLGAKCVIGLPFIIEFLVYISTSQEGSPLLSWQRKYDIVVGVARGIGYLHRGCDVRILHFDIKPHNILLDENFIPKISDFGLAKLYPTDISIVNLTAARGTIGYVAPELISRSIGVISYKADVYSFGMLLMEMLDLKRHEGANEENSSQYFPYYIYDKFNKGKEIVVDEEANDDEKKMARKLTLVTFMVHTNKSDTTPFDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77303" stop="77632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISETCYARNSEFHYYVRSACGNIPDISYPFRLKIDSKYSYLFSSNTGSKLFTEYELACEGNQTVVWLFSKKLHVQAINYVNHTTPVVDPTLQKQDLCSLLPQPSTIHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="80752" PGL_stop="86848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81064" e_stop="81098"/>
            <exon e_start="81285" e_stop="81340"/>
            <exon e_start="81511" e_stop="81556"/>
            <exon e_start="81987" e_stop="82121"/>
            <exon e_start="82307" e_stop="82438"/>
            <exon e_start="82947" e_stop="83030"/>
            <exon e_start="83109" e_stop="83207"/>
            <exon e_start="84507" e_stop="84598"/>
            <exon e_start="85125" e_stop="85197"/>
            <exon e_start="85269" e_stop="85345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.280" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.973"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81064" e_stop="81098" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.960">
            <gDNA_intron_boundary i_start="81099" i_stop="81284" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81285" e_stop="81340" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="81341" i_stop="81510" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81511" e_stop="81556" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="81557" i_stop="81986" i_length="430"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81987" e_stop="82121" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.860">
            <gDNA_intron_boundary i_start="82122" i_stop="82306" i_length="185"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82307" e_stop="82438" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.280">
            <gDNA_intron_boundary i_start="82439" i_stop="82946" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82947" e_stop="83030" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.949" acc_prob="0.906">
            <gDNA_intron_boundary i_start="83031" i_stop="83108" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="83109" e_stop="83207" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83208" i_stop="84506" i_length="1299"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84507" e_stop="84598" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84599" i_stop="85124" i_length="526"/>
          </intron>
          <exon e_serial="9" e_score="0.973">
            <gDNA_exon_boundary e_start="85125" e_stop="85197" e_length="73"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="85198" i_stop="85268" i_length="71"/>
          </intron>
          <exon e_serial="10" e_score="0.909">
            <gDNA_exon_boundary e_start="85269" e_stop="85345" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81064" stop="81098"/>
              <exon start="81285" stop="81340"/>
              <exon start="81511" stop="81556"/>
              <exon start="81987" stop="82121"/>
              <exon start="82307" stop="82438"/>
              <exon start="82947" stop="83030"/>
              <exon start="83109" stop="83207"/>
              <exon start="84507" stop="84598"/>
              <exon start="85125" stop="85197"/>
              <exon start="85269" stop="85345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81064" stop="81098"/>
              <exon start="81285" stop="81340"/>
              <exon start="81511" stop="81556"/>
              <exon start="81987" stop="82121"/>
              <exon start="82307" stop="82438"/>
              <exon start="82947" stop="83030"/>
              <exon start="83109" stop="83207"/>
              <exon start="84507" stop="84598"/>
              <exon start="85125" stop="85192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82317" stop="82438"/>
              <exon start="82947" stop="83030"/>
              <exon start="83109" stop="83207"/>
              <exon start="84507" stop="84573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGATCGTCCCTTTCTTACTGGCCAATTTTATCAG : GAAACAAAGATTTCGTCTGGAACTTCTGAGTACAAGGGGTTTTCTGCGGAATCAAG : TTCCGGAGCAGATAAAGCTATAGGTTGTTACCATGCCACCATTCAG : GAATTGATTGTTATTGATGATCTTCTATCTACCCTTATTGGAATTGAAGGACGCTATATTTCGATCAAGAAAGTCCGAGGGAAGGAGGATGACATAACCTTTCAGGTTGATGCATCTATGGATTTAGCTCTTCAG : GAGTTTGCAAAAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTT : GACTACCAAGCAATGGTGGCACAGCTTGAACATCAATTTCGCTTAGGAAAACTTTCTATACAAGGATTATGGTTTTACTGCCAG : CCAATGATGGGTTCGATGCAAGCACTGTCTATGGTGGTGAAAAAGGCTGCAGCGGATAACTGTGTTGGTTCTGCAGTCCTTAACCTCTTGCAAAGCCAG : GCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCACTGCATATCTTGGAATATTAGAGAG : GTGGGTGTATGAAGGAGTGATTGATGATCCTTATGGTGAATTCTTTATTGCCGAGAACAAGTCTCTTCAGAAG : GAGAGTCTTACTCAAGATTATGATGCCAAGTACTGGCAACAACGTTACAGCCTGAAAGATGAAATTCCTAGCTTCCT</gDNA_template>
            <first_frame> S  I  V  P  F  L  L  A  N  F  I  R :   K  Q  R  F  R  L  E  L  L  S  T  R  G  F  L  R  N  Q   : V  P  E  Q  I  K  L  *  V  V  T  M  P  P  F  R :   N  *  L  L  L  M  I  F  Y  L  P  L  L  E  L  K  D  A  I  F  R  S  R  K  S  E  G  R  R  M  T  *  P  F  R  L  M  H  L  W  I  *  L  F  R :   S  L  Q  K  G  C  S  R  Y  A  K  V  I  S  *  L  T  S  L  W  R  Q  G  H  S  S  R  Q  A  *  S  I  M  P  L  L  Q  L  *  G  H  S  S  L :   T  T  K  Q  W  W  H  S  L  N  I  N  F  A  *  E  N  F  L  Y  K  D  Y  G  F  T  A  S :   Q  *  W  V  R  C  K  H  C  L  W  W  *  K  R  L  Q  R  I  T  V  L  V  L  Q  S  L  T  S  C  K  A  R :   Q  R  Q  W  L  V  I  M  *  *  G  L  C  W  K  R  C  H  N  Q  Q  A  L  H  I  L  E  Y  *  R   : G  G  C  M  K  E  *  L  M  I  L  M  V  N  S  L  L  P  R  T  S  L  F  R  R :   R  V  L  L  K  I  M  M  P  S  T  G  N  N  V  T  A  *  K  M  K  F  L  A  S  </first_frame>
            <second_frame>  R  S  S  L  S  Y  W  P  I  L  S   : G  N  K  D  F  V  W  N  F  *  V  Q  G  V  F  C  G  I  K  :  F  R  S  R  *  S  Y  R  L  L  P  C  H  H  S   : G  I  D  C  Y  *  *  S  S  I  Y  P  Y  W  N  *  R  T  L  Y  F  D  Q  E  S  P  R  E  G  G  *  H  N  L  S  G  *  C  I  Y  G  F  S  S  S   : G  V  C  K  K  A  V  P  V  M  R  K  L  Y  L  D  *  P  V  C  G  D  K  V  T  V  Q  D  R  P  S  Q  S  C  L  C  C  S  S  K  G  T  P  P   : *  L  P  S  N  G  G  T  A  *  T  S  I  S  L  R  K  T  F  Y  T  R  I  M  V  L  L  P   : A  N  D  G  F  D  A  S  T  V  Y  G  G  E  K  G  C  S  G  *  L  C  W  F  C  S  P  *  P  L  A  K  P   : G  K  G  N  G  W  *  S  C  S  E  V  F  A  G  K  D  V  T  I  S  K  H  C  I  S  W  N  I  R  E  :  V  G  V  *  R  S  D  *  *  S  L  W  *  I  L  Y  C  R  E  Q  V  S  S  E   : G  E  S  Y  S  R  L  *  C  Q  V  L  A  T  T  L  Q  P  E  R  *  N  S  *  L  P </second_frame>
            <third_frame>   D  R  P  F  L  T  G  Q  F  Y  Q  :  E  T  K  I  S  S  G  T  S  E  Y  K  G  F  S  A  E  S  S :   S  G  A  D  K  A  I  G  C  Y  H  A  T  I  Q  :  E  L  I  V  I  D  D  L  L  S  T  L  I  G  I  E  G  R  Y  I  S  I  K  K  V  R  G  K  E  D  D  I  T  F  Q  V  D  A  S  M  D  L  A  L  Q  :  E  F  A  K  R  L  F  P  L  C  E  S  Y  I  L  I  N  Q  F  V  E  T  R  S  Q  F  K  T  G  L  V  N  H  A  F  A  A  A  L  R  A  L  L  L  :  D  Y  Q  A  M  V  A  Q  L  E  H  Q  F  R  L  G  K  L  S  I  Q  G  L  W  F  Y  C  Q  :  P  M  M  G  S  M  Q  A  L  S  M  V  V  K  K  A  A  A  D  N  C  V  G  S  A  V  L  N  L  L  Q  S  Q  :  A  K  A  M  A  G  D  H  V  V  R  S  L  L  E  K  M  S  Q  S  A  S  T  A  Y  L  G  I  L  E  R :   W  V  Y  E  G  V  I  D  D  P  Y  G  E  F  F  I  A  E  N  K  S  L  Q  K  :  E  S  L  T  Q  D  Y  D  A  K  Y  W  Q  Q  R  Y  S  L  K  D  E  I  P  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81066" stop="81098"/>
                    <exon start="81285" stop="81340"/>
                    <exon start="81511" stop="81556"/>
                    <exon start="81987" stop="82121"/>
                    <exon start="82307" stop="82438"/>
                    <exon start="82947" stop="83030"/>
                    <exon start="83109" stop="83207"/>
                    <exon start="84507" stop="84598"/>
                    <exon start="85125" stop="85197"/>
                    <exon start="85269" stop="85343"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DRPFLTGQFYQETKISSGTSEYKGFSAESSSGADKAIGCYHATIQELIVIDDLLSTLIGIEGRYISIKKVRGKEDDITFQVDASMDLALQEFAKRLFPLCESYILINQFVETRSQFKTGLVNHAFAAALRALLLDYQAMVAQLEHQFRLGKLSIQGLWFYCQPMMGSMQALSMVVKKAAADNCVGSAVLNLLQSQAKAMAGDHVVRSLLEKMSQSASTAYLGILERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWQQRYSLKDEIPSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80752" e_stop="81098"/>
            <exon e_start="81285" e_stop="81340"/>
            <exon e_start="81511" e_stop="81556"/>
            <exon e_start="82036" e_stop="82121"/>
            <exon e_start="82307" e_stop="82438"/>
            <exon e_start="84507" e_stop="84598"/>
            <exon e_start="85125" e_stop="85197"/>
            <exon e_start="85269" e_stop="85421"/>
            <exon e_start="85541" e_stop="85660"/>
            <exon e_start="85778" e_stop="85831"/>
            <exon e_start="86295" e_stop="86378"/>
            <exon e_start="86479" e_stop="86553"/>
            <exon e_start="86640" e_stop="86848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.960" e_score="0.997"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.355" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.234" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="80752" e_stop="81098" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.960">
            <gDNA_intron_boundary i_start="81099" i_stop="81284" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81285" e_stop="81340" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="81341" i_stop="81510" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81511" e_stop="81556" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.355">
            <gDNA_intron_boundary i_start="81557" i_stop="82035" i_length="479"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82036" e_stop="82121" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.860">
            <gDNA_intron_boundary i_start="82122" i_stop="82306" i_length="185"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82307" e_stop="82438" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82439" i_stop="84506" i_length="2068"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="84507" e_stop="84598" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84599" i_stop="85124" i_length="526"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85125" e_stop="85197" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="85198" i_stop="85268" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="85269" e_stop="85421" e_length="153"/>
          </exon>
          <intron i_serial="8" don_prob="0.234" acc_prob="0.890">
            <gDNA_intron_boundary i_start="85422" i_stop="85540" i_length="119"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="85541" e_stop="85660" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="0.949">
            <gDNA_intron_boundary i_start="85661" i_stop="85777" i_length="117"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="85778" e_stop="85831" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85832" i_stop="86294" i_length="463"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="86295" e_stop="86378" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.986" acc_prob="0.936">
            <gDNA_intron_boundary i_start="86379" i_stop="86478" i_length="100"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="86479" e_stop="86553" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.985" acc_prob="0.947">
            <gDNA_intron_boundary i_start="86554" i_stop="86639" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="0.976">
            <gDNA_exon_boundary e_start="86640" e_stop="86848" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80752" stop="81098"/>
              <exon start="81285" stop="81340"/>
              <exon start="81511" stop="81556"/>
              <exon start="82036" stop="82121"/>
              <exon start="82307" stop="82438"/>
              <exon start="84507" stop="84598"/>
              <exon start="85125" stop="85197"/>
              <exon start="85269" stop="85421"/>
              <exon start="85541" stop="85660"/>
              <exon start="85778" stop="85831"/>
              <exon start="86295" stop="86378"/>
              <exon start="86479" stop="86553"/>
              <exon start="86640" stop="86848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGTTCTCTTTTTGTTTAAACTGTGAGACTGAATTTGCTTTCCCAAAAATTTCATCTTCAGCTAATCAGAACATCAACCCTAAAATGAGAAACACTTTGTGAAATCTTGAAAGTTTAAGTTCTGAATTGAACTGCGGTGGCATTGTGGTCGTGTCTACGGTTTCAAACAGTCACCGGAAGTGCCGGTGGAGCAATTCCTGCTGAAACTGAGTTGGGTCATCCCCATTTACTTCAACTTCAAGATTTGAGACGAATTACATGGATTCAGCCGCTGCAATTTCTTTATGCCCATCAACTCCTGGTTGGAATCTCGATCGTCCCTTTCTTACTGGCCAATTTTATCAG : GAAACAAAGATTTCGTCTGGAACTTCTGAGTACAAGGGGTTTTCTGCGGAATCAAG : TTCCGGAGCAGATAAAGCTATAGGTTGTTACCATGCCACCATTCAG : GACGCTATATTTCGATCAAGAAAGTCCGAGGGAAGGAGGATGACATAACCTTTCAGGTTGATGCATCTATGGATTTAGCTCTTCAG : GAGTTTGCAAAAAGGCTGTTCCCGTTATGCGAAAGTTATATCTTGATTAACCAGTTTGTGGAGACAAGGTCACAGTTCAAGACAGGCCTAGTCAATCATGCCTTTGCTGCAGCTCTAAGGGCACTCCTCCTT : GCAAAGGCAATGGCTGGTGATCATGTAGTGAGGTCTTTGCTGGAAAAGATGTCACAATCAGCAAGCACTGCATATCTTGGAATATTAGAGAG : GTGGGTGTATGAAGGAGTGATTGATGATCCTTATGGTGAATTCTTTATTGCCGAGAACAAGTCTCTTCAGAAG : GAGAGTCTTACTCAAGATTATGATGCCAAGTACTGGCAACAACGTTACAGCCTGAAAGATGAAATTCCTAGCTTCCTTGCAAATGCAGCGGAAACAATTTTGATCACTGGAAAATATTTAAATGTCATGAGAGAGTGTGGACATAGCATTCAG : ATCCCTGTGGCAGAAAAGTCAAAGTTGACAAGTGCAGGCTCAAATCATCACTATTTGGAGTGTATCAAGTCTGCTTATGATTTTGCCAGTGGCGAACTATTAAACCTTGTTAAAAACAAG : TATGATCTCATGGGTAAACTGCAATCTATTAAGCACTATCTTCTTCTTGATCAG : GGTGATTTCTTAGTGCACTTCATGGATACAGCTAGAGAGGAGCTCATGAAGAAGCCTGATGAGATATCTGTGGAGAAGCTACAG : TCTCTTCTAGACCTTGCTTTGCGATCTACTGCAGCTGGTGCAGATCCTTGCCATGAGGACTTGTTATGTTGTGTG : GAGAGGACTACTTTATTGAAAAGATTGAGTACATTGAAAGATCTTGAAATCAGCCGGTCTGCTCCAGATAGCAATGATTTAGAGGAGCCACTGAGCATAACTGGCTTGGAAACTTTTTCTTTGAATTACAAGGTTTGCCTTCTAATTTCTCTTGTAGATGAAGGAAATTACACCGCAGCTCCACACAACAAAAAGAAAAAGAAAAAAGA</gDNA_template>
            <first_frame> C  S  S  L  F  V  *  T  V  R  L  N  L  L  S  Q  K  F  H  L  Q  L  I  R  T  S  T  L  K  *  E  T  L  C  E  I  L  K  V  *  V  L  N  *  T  A  V  A  L  W  S  C  L  R  F  Q  T  V  T  G  S  A  G  G  A  I  P  A  E  T  E  L  G  H  P  H  L  L  Q  L  Q  D  L  R  R  I  T  W  I  Q  P  L  Q  F  L  Y  A  H  Q  L  L  V  G  I  S  I  V  P  F  L  L  A  N  F  I  R :   K  Q  R  F  R  L  E  L  L  S  T  R  G  F  L  R  N  Q   : V  P  E  Q  I  K  L  *  V  V  T  M  P  P  F  R :   T  L  Y  F  D  Q  E  S  P  R  E  G  G  *  H  N  L  S  G  *  C  I  Y  G  F  S  S  S   : G  V  C  K  K  A  V  P  V  M  R  K  L  Y  L  D  *  P  V  C  G  D  K  V  T  V  Q  D  R  P  S  Q  S  C  L  C  C  S  S  K  G  T  P  P   : C  K  G  N  G  W  *  S  C  S  E  V  F  A  G  K  D  V  T  I  S  K  H  C  I  S  W  N  I  R  E  :  V  G  V  *  R  S  D  *  *  S  L  W  *  I  L  Y  C  R  E  Q  V  S  S  E   : G  E  S  Y  S  R  L  *  C  Q  V  L  A  T  T  L  Q  P  E  R  *  N  S  *  L  P  C  K  C  S  G  N  N  F  D  H  W  K  I  F  K  C  H  E  R  V  W  T  *  H  S   : D  P  C  G  R  K  V  K  V  D  K  C  R  L  K  S  S  L  F  G  V  Y  Q  V  C  L  *  F  C  Q  W  R  T  I  K  P  C  *  K  Q   : V  *  S  H  G  *  T  A  I  Y  *  A  L  S  S  S  *  S   : G  *  F  L  S  A  L  H  G  Y  S  *  R  G  A  H  E  E  A  *  *  D  I  C  G  E  A  T   : V  S  S  R  P  C  F  A  I  Y  C  S  W  C  R  S  L  P  *  G  L  V  M  L  C   : G  E  D  Y  F  I  E  K  I  E  Y  I  E  R  S  *  N  Q  P  V  C  S  R  *  Q  *  F  R  G  A  T  E  H  N  W  L  G  N  F  F  F  E  L  Q  G  L  P  S  N  F  S  C  R  *  R  K  L  H  R  S  S  T  Q  Q  K  E  K  E  K  R </first_frame>
            <second_frame>  A  V  L  F  L  F  K  L  *  D  *  I  C  F  P  K  N  F  I  F  S  *  S  E  H  Q  P  *  N  E  K  H  F  V  K  S  *  K  F  K  F  *  I  E  L  R  W  H  C  G  R  V  Y  G  F  K  Q  S  P  E  V  P  V  E  Q  F  L  L  K  L  S  W  V  I  P  I  Y  F  N  F  K  I  *  D  E  L  H  G  F  S  R  C  N  F  F  M  P  I  N  S  W  L  E  S  R  S  S  L  S  Y  W  P  I  L  S   : G  N  K  D  F  V  W  N  F  *  V  Q  G  V  F  C  G  I  K  :  F  R  S  R  *  S  Y  R  L  L  P  C  H  H  S   : G  R  Y  I  S  I  K  K  V  R  G  K  E  D  D  I  T  F  Q  V  D  A  S  M  D  L  A  L  Q  :  E  F  A  K  R  L  F  P  L  C  E  S  Y  I  L  I  N  Q  F  V  E  T  R  S  Q  F  K  T  G  L  V  N  H  A  F  A  A  A  L  R  A  L  L  L  :  A  K  A  M  A  G  D  H  V  V  R  S  L  L  E  K  M  S  Q  S  A  S  T  A  Y  L  G  I  L  E  R :   W  V  Y  E  G  V  I  D  D  P  Y  G  E  F  F  I  A  E  N  K  S  L  Q  K  :  E  S  L  T  Q  D  Y  D  A  K  Y  W  Q  Q  R  Y  S  L  K  D  E  I  P  S  F  L  A  N  A  A  E  T  I  L  I  T  G  K  Y  L  N  V  M  R  E  C  G  H  S  I  Q  :  I  P  V  A  E  K  S  K  L  T  S  A  G  S  N  H  H  Y  L  E  C  I  K  S  A  Y  D  F  A  S  G  E  L  L  N  L  V  K  N  K  :  Y  D  L  M  G  K  L  Q  S  I  K  H  Y  L  L  L  D  Q  :  G  D  F  L  V  H  F  M  D  T  A  R  E  E  L  M  K  K  P  D  E  I  S  V  E  K  L  Q  :  S  L  L  D  L  A  L  R  S  T  A  A  G  A  D  P  C  H  E  D  L  L  C  C  V  :  E  R  T  T  L  L  K  R  L  S  T  L  K  D  L  E  I  S  R  S  A  P  D  S  N  D  L  E  E  P  L  S  I  T  G  L  E  T  F  S  L  N  Y  K  V  C  L  L  I  S  L  V  D  E  G  N  Y  T  A  A  P  H  N  K  K  K  K  K  K   </second_frame>
            <third_frame>   Q  F  S  F  C  L  N  C  E  T  E  F  A  F  P  K  I  S  S  S  A  N  Q  N  I  N  P  K  M  R  N  T  L  *  N  L  E  S  L  S  S  E  L  N  C  G  G  I  V  V  V  S  T  V  S  N  S  H  R  K  C  R  W  S  N  S  C  *  N  *  V  G  S  S  P  F  T  S  T  S  R  F  E  T  N  Y  M  D  S  A  A  A  I  S  L  C  P  S  T  P  G  W  N  L  D  R  P  F  L  T  G  Q  F  Y  Q  :  E  T  K  I  S  S  G  T  S  E  Y  K  G  F  S  A  E  S  S :   S  G  A  D  K  A  I  G  C  Y  H  A  T  I  Q  :  D  A  I  F  R  S  R  K  S  E  G  R  R  M  T  *  P  F  R  L  M  H  L  W  I  *  L  F  R :   S  L  Q  K  G  C  S  R  Y  A  K  V  I  S  *  L  T  S  L  W  R  Q  G  H  S  S  R  Q  A  *  S  I  M  P  L  L  Q  L  *  G  H  S  S  L :   Q  R  Q  W  L  V  I  M  *  *  G  L  C  W  K  R  C  H  N  Q  Q  A  L  H  I  L  E  Y  *  R   : G  G  C  M  K  E  *  L  M  I  L  M  V  N  S  L  L  P  R  T  S  L  F  R  R :   R  V  L  L  K  I  M  M  P  S  T  G  N  N  V  T  A  *  K  M  K  F  L  A  S  L  Q  M  Q  R  K  Q  F  *  S  L  E  N  I  *  M  S  *  E  S  V  D  I  A  F  R :   S  L  W  Q  K  S  Q  S  *  Q  V  Q  A  Q  I  I  T  I  W  S  V  S  S  L  L  M  I  L  P  V  A  N  Y  *  T  L  L  K  T  S :   M  I  S  W  V  N  C  N  L  L  S  T  I  F  F  L  I  R :   V  I  S  *  C  T  S  W  I  Q  L  E  R  S  S  *  R  S  L  M  R  Y  L  W  R  S  Y  S :   L  F  *  T  L  L  C  D  L  L  Q  L  V  Q  I  L  A  M  R  T  C  Y  V  V  W :   R  G  L  L  Y  *  K  D  *  V  H  *  K  I  L  K  S  A  G  L  L  Q  I  A  M  I  *  R  S  H  *  A  *  L  A  W  K  L  F  L  *  I  T  R  F  A  F  *  F  L  L  *  M  K  E  I  T  P  Q  L  H  T  T  K  R  K  R  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81526" stop="81556"/>
                    <exon start="82036" stop="82121"/>
                    <exon start="82307" stop="82438"/>
                    <exon start="84507" stop="84598"/>
                    <exon start="85125" stop="85197"/>
                    <exon start="85269" stop="85421"/>
                    <exon start="85541" stop="85660"/>
                    <exon start="85778" stop="85831"/>
                    <exon start="86295" stop="86378"/>
                    <exon start="86479" stop="86553"/>
                    <exon start="86640" stop="86846"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYRLLPCHHSGRYISIKKVRGKEDDITFQVDASMDLALQEFAKRLFPLCESYILINQFVETRSQFKTGLVNHAFAAALRALLLAKAMAGDHVVRSLLEKMSQSASTAYLGILERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWQQRYSLKDEIPSFLANAAETILITGKYLNVMRECGHSIQIPVAEKSKLTSAGSNHHYLECIKSAYDFASGELLNLVKNKYDLMGKLQSIKHYLLLDQGDFLVHFMDTAREELMKKPDEISVEKLQSLLDLALRSTAAGADPCHEDLLCCVERTTLLKRLSTLKDLEISRSAPDSNDLEEPLSITGLETFSLNYKVCLLISLVDEGNYTAAPHNKKKKKK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80884" stop="81098"/>
                    <exon start="81285" stop="81340"/>
                    <exon start="81511" stop="81533"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAVALWSCLRFQTVTGSAGGAIPAETELGHPHLLQLQDLRRITWIQPLQFLYAHQLLVGISIVPFLLANFIRKQRFRLELLSTRGFLRNQVPEQIKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="91368" PGL_stop="91964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91368" e_stop="91964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="91368" e_stop="91964" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91368" stop="91839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91369" stop="91866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91383" stop="91964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTTTCTACAATGGCAGAGCAACAAAGAATTCATCCAGTACCTGAACCAGAACATGAACTTCCAGTACAAAAACCCTCTGTCCCTTTAGTGCCAAAGGGCTCTTTCAGTTCAGAAAAAGGTGACCCTGAGAAACAGCAGCAGCAGCAGCAACCACCTTTTAGAAGAACAATCCCATATTATCCACCATTAAAACCACCAAAGAGAAGATGTTGTTCTTGCAAAAGATGTCTATGTTGCACATGTTGTCTGTTGTTCATCATCATCATAATCATTGCTGCTTTATCTGCTGCTTTTTACTTTGTCTTCCAGCCAAAAATACCAAAGTACTCCGTTGACAGTATGAGAATCACACAGTTCAATTTCAATAATGACATGAGCTTATTGTTTGCTACTTTTAATGTTAACATCACTGCAAGAAACCCCAACAAGAAGATTGGGATTTACTATGAAAATGGTAGCCAATTGAGTGTTTGGTATACTGGTGTTCAGCTTTGTGAAGGGTCATTGCCAAGATTTTATCAGGGTCATCAGAATACTACTGTACTCAGTTTGGATTTATCAGGACAAACACAGAATGTTACTGGATTGTTGCA</gDNA_template>
            <first_frame> I  S  F  Y  N  G  R  A  T  K  N  S  S  S  T  *  T  R  T  *  T  S  S  T  K  T  L  C  P  F  S  A  K  G  L  F  Q  F  R  K  R  *  P  *  E  T  A  A  A  A  A  T  T  F  *  K  N  N  P  I  L  S  T  I  K  T  T  K  E  K  M  L  F  L  Q  K  M  S  M  L  H  M  L  S  V  V  H  H  H  H  N  H  C  C  F  I  C  C  F  L  L  C  L  P  A  K  N  T  K  V  L  R  *  Q  Y  E  N  H  T  V  Q  F  Q  *  *  H  E  L  I  V  C  Y  F  *  C  *  H  H  C  K  K  P  Q  Q  E  D  W  D  L  L  *  K  W  *  P  I  E  C  L  V  Y  W  C  S  A  L  *  R  V  I  A  K  I  L  S  G  S  S  E  Y  Y  C  T  Q  F  G  F  I  R  T  N  T  E  C  Y  W  I  V  A </first_frame>
            <second_frame>  F  L  S  T  M  A  E  Q  Q  R  I  H  P  V  P  E  P  E  H  E  L  P  V  Q  K  P  S  V  P  L  V  P  K  G  S  F  S  S  E  K  G  D  P  E  K  Q  Q  Q  Q  Q  Q  P  P  F  R  R  T  I  P  Y  Y  P  P  L  K  P  P  K  R  R  C  C  S  C  K  R  C  L  C  C  T  C  C  L  L  F  I  I  I  I  I  I  A  A  L  S  A  A  F  Y  F  V  F  Q  P  K  I  P  K  Y  S  V  D  S  M  R  I  T  Q  F  N  F  N  N  D  M  S  L  L  F  A  T  F  N  V  N  I  T  A  R  N  P  N  K  K  I  G  I  Y  Y  E  N  G  S  Q  L  S  V  W  Y  T  G  V  Q  L  C  E  G  S  L  P  R  F  Y  Q  G  H  Q  N  T  T  V  L  S  L  D  L  S  G  Q  T  Q  N  V  T  G  L  L   </second_frame>
            <third_frame>   F  F  L  Q  W  Q  S  N  K  E  F  I  Q  Y  L  N  Q  N  M  N  F  Q  Y  K  N  P  L  S  L  *  C  Q  R  A  L  S  V  Q  K  K  V  T  L  R  N  S  S  S  S  S  N  H  L  L  E  E  Q  S  H  I  I  H  H  *  N  H  Q  R  E  D  V  V  L  A  K  D  V  Y  V  A  H  V  V  C  C  S  S  S  S  *  S  L  L  L  Y  L  L  L  F  T  L  S  S  S  Q  K  Y  Q  S  T  P  L  T  V  *  E  S  H  S  S  I  S  I  M  T  *  A  Y  C  L  L  L  L  M  L  T  S  L  Q  E  T  P  T  R  R  L  G  F  T  M  K  M  V  A  N  *  V  F  G  I  L  V  F  S  F  V  K  G  H  C  Q  D  F  I  R  V  I  R  I  L  L  Y  S  V  W  I  Y  Q  D  K  H  R  M  L  L  D  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91369" stop="91962"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSTMAEQQRIHPVPEPEHELPVQKPSVPLVPKGSFSSEKGDPEKQQQQQQPPFRRTIPYYPPLKPPKRRCCSCKRCLCCTCCLLFIIIIIIAALSAAFYFVFQPKIPKYSVDSMRITQFNFNNDMSLLFATFNVNITARNPNKKIGIYYENGSQLSVWYTGVQLCEGSLPRFYQGHQNTTVLSLDLSGQTQNVTGLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="100831" PGL_stop="97691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100831" e_stop="100824"/>
            <exon e_start="100629" e_stop="100408"/>
            <exon e_start="100235" e_stop="100160"/>
            <exon e_start="100072" e_stop="99900"/>
            <exon e_start="99307" e_stop="99006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.013" e_score="0.750"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="100831" e_stop="100824" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.013">
            <gDNA_intron_boundary i_start="100823" i_stop="100630" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="100629" e_stop="100408" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100235" e_stop="100160" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100072" e_stop="99900" e_length="173"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="99307" e_stop="99006" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100831" stop="100824"/>
              <exon start="100629" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100575" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100559" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286874" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100558" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100558" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100557" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100545" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100544" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100544" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100541" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100536" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100530" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100529" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100526" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100510" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100457" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100443" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100443" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100414" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGACAA : AGAGATCTTGAATAGGTCAATATAAATAAACCTCACCTCAACGCAAAGCGAAGTATCAATTCTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA : GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG : AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG : GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGTATCAAGTTACCTCATCTGCATACTGTTTTCAGTGTTTGCCATTTTTAGTTACAGTGATTTTATTATGATTTGGAAGGAAATTGGCATTGCTCAAGACTATTGTAACATGACTT</gDNA_template>
            <first_frame> R  D  K :   E  I  L  N  R  S  I  *  I  N  L  T  S  T  Q  S  E  V  S  I  L  P  F  L  I  L  P  L  K  T  P  N  R  K  K  T  M  A  G  V  E  F  L  P  K  E  Y  G  Y  V  I  L  A  L  V  V  Y  C  F  F  N  F  W  M  S  F  Q  V  G  K  A  R  K  Q :   Y  K  V  P  Y  P  T  M  Y  A  T  E  A  E  N  K  N  A  N  S  F  N  C  V  Q  :  R  G  H  Q  N  S  L  E  M  M  P  T  F  F  M  L  M  I  V  G  G  I  R  H  P  L  I  C  A  S  L  G  A  V  Y  I  V  S  R  Y  F  Y  F  T  G  Y  S  T  G  D  P  Q  N  R  L  T  L  G :   K  Y  N  F  L  A  I  M  A  L  M  I  C  A  A  S  C  G  V  N  F  L  M  S  *  I  L  V  S  N  R  V  T  S  L  *  F  P  L  F  P  V  R  N  D  V  F  F  M  S  V  L  S  L  I  *  I  E  L  V  L  S  V  S  S  Y  L  I  C  I  L  F  S  V  F  A  I  F  S  Y  S  D  F  I  M  I  W  K  E  I  G  I  A  Q  D  Y  C  N  M  T  </first_frame>
            <second_frame>  E  T   : K  R  S  *  I  G  Q  Y  K  *  T  S  P  Q  R  K  A  K  Y  Q  F  S  L  F  S  Y  F  L  S  K  H  Q  I  G  K  K  P  W  P  E  L  N  S  S  P  K  N  M  D  M  *  F  L  L  L  S  S  T  V  S  S  T  S  G  C  P  F  K  S  A  K  P  A  N   : S  T  R  F  L  I  Q  Q  C  M  L  L  K  L  K  T  R  M  L  I  P  L  T  V  F  R :   E  V  I  R  I  H  *  K  *  C  Q  H  F  S  C  *  *  L  L  E  E  L  G  T  P  *  F  V  H  L  L  E  L  F  I  L  Y  L  A  I  S  T  S  L  V  I  P  L  A  I  P  K  I  G  L  L  L   : G  N  T  I  S  W  Q  L  W  H  *  *  F  A  Q  H  L  V  E  L  I  F  L  C  H  E  Y  *  S  Q  I  E  *  P  P  C  N  S  L  Y  F  Q  *  E  M  M  S  F  L  C  L  F  C  H  *  Y  E  L  N  W  Y  F  L  Y  Q  V  T  S  S  A  Y  C  F  Q  C  L  P  F  L  V  T  V  I  L  L  *  F  G  R  K  L  A  L  L  K  T  I  V  T  *  L </second_frame>
            <third_frame>   R  Q  :  R  D  L  E  *  V  N  I  N  K  P  H  L  N  A  K  R  S  I  N  S  P  F  S  H  T  S  S  Q  N  T  K  S  E  K  N  H  G  R  S  *  I  P  P  Q  R  I  W  I  C  N  S  C  S  C  R  L  L  F  L  Q  L  L  D  V  L  S  S  R  Q  S  P  Q  T  :  V  Q  G  S  L  S  N  N  V  C  Y  *  S  *  K  Q  E  C  *  F  L  *  L  C  S   : E  R  S  S  E  F  I  R  N  D  A  N  I  F  H  A  D  D  C  W  R  N  *  A  P  L  D  L  C  I  S  W  S  C  L  Y  C  I  S  L  F  L  L  H  W  L  F  H  W  R  S  P  K  S  A  Y  S  W  :  E  I  Q  F  L  G  N  Y  G  T  D  D  L  R  S  I  L  W  S  *  F  S  Y  V  M  N  I  S  L  K  *  S  N  L  L  V  I  P  F  I  S  S  K  K  *  C  L  F  Y  V  C  F  V  I  N  M  N  *  I  G  T  F  C  I  K  L  P  H  L  H  T  V  F  S  V  C  H  F  *  L  Q  *  F  Y  Y  D  L  E  G  N  W  H  C  S  R  L  L  *  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100604" stop="100408"/>
                    <exon start="100235" stop="100160"/>
                    <exon start="100072" stop="99900"/>
                    <exon start="99307" stop="99232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLTSTQSEVSILPFLILPLKTPNRKKTMAGVEFLPKEYGYVILALVVYCFFNFWMSFQVGKARKQYKVPYPTMYATEAENKNANSFNCVQRGHQNSLEMMPTFFMLMIVGGIRHPLICASLGAVYIVSRYFYFTGYSTGDPQNRLTLGKYNFLAIMALMICAASCGVNFLMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100831" e_stop="100824"/>
            <exon e_start="100629" e_stop="100408"/>
            <exon e_start="100235" e_stop="100160"/>
            <exon e_start="100072" e_stop="99900"/>
            <exon e_start="99307" e_stop="99119"/>
            <exon e_start="97706" e_stop="97691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.013" e_score="0.750"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="100831" e_stop="100824" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.013">
            <gDNA_intron_boundary i_start="100823" i_stop="100630" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="100629" e_stop="100408" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="100407" i_stop="100236" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100235" e_stop="100160" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100072" e_stop="99900" e_length="173"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99899" i_stop="99308" i_length="592"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99307" e_stop="99119" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99118" i_stop="97707" i_length="1412"/>
          </intron>
          <exon e_serial="6" e_score="0.938">
            <gDNA_exon_boundary e_start="97706" e_stop="97691" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100831" stop="100824"/>
              <exon start="100629" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100568" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99119"/>
              <exon start="97706" stop="97691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100568" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99119"/>
              <exon start="97706" stop="97691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100558" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100541" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100536" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100530" stop="100408"/>
              <exon start="100235" stop="100160"/>
              <exon start="100072" stop="99900"/>
              <exon start="99307" stop="99215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGACAA : AGAGATCTTGAATAGGTCAATATAAATAAACCTCACCTCAACGCAAAGCGAAGTATCAATTCTCCCTTTTCTCATACTTCCTCTCAAAACACCAAATCGGAAAAAAACCATGGCCGGAGTTGAATTCCTCCCCAAAGAATATGGATATGTAATTCTTGCTCTTGTCGTCTACTGTTTCTTCAACTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACA : GTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG : AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGG : GAAATACAATTTCTTGGCAATTATGGCACTGATGATTTGCGCAGCATCTTGTGGAGTTAATTTTCTTATGTCATGAATATTAGTCTCAAATAGAGTAACCTCCTTGTAATTCCCTTTATTTCCAGTAAGAAATGATGTCTTTTTTATGTCTGTTTTGTCATTAATATGAATTGAATTGGTACTTTCTGT : GAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> R  D  K :   E  I  L  N  R  S  I  *  I  N  L  T  S  T  Q  S  E  V  S  I  L  P  F  L  I  L  P  L  K  T  P  N  R  K  K  T  M  A  G  V  E  F  L  P  K  E  Y  G  Y  V  I  L  A  L  V  V  Y  C  F  F  N  F  W  M  S  F  Q  V  G  K  A  R  K  Q :   Y  K  V  P  Y  P  T  M  Y  A  T  E  A  E  N  K  N  A  N  S  F  N  C  V  Q  :  R  G  H  Q  N  S  L  E  M  M  P  T  F  F  M  L  M  I  V  G  G  I  R  H  P  L  I  C  A  S  L  G  A  V  Y  I  V  S  R  Y  F  Y  F  T  G  Y  S  T  G  D  P  Q  N  R  L  T  L  G :   K  Y  N  F  L  A  I  M  A  L  M  I  C  A  A  S  C  G  V  N  F  L  M  S  *  I  L  V  S  N  R  V  T  S  L  *  F  P  L  F  P  V  R  N  D  V  F  F  M  S  V  L  S  L  I  *  I  E  L  V  L  S  V :   K  K  K  K  K </first_frame>
            <second_frame>  E  T   : K  R  S  *  I  G  Q  Y  K  *  T  S  P  Q  R  K  A  K  Y  Q  F  S  L  F  S  Y  F  L  S  K  H  Q  I  G  K  K  P  W  P  E  L  N  S  S  P  K  N  M  D  M  *  F  L  L  L  S  S  T  V  S  S  T  S  G  C  P  F  K  S  A  K  P  A  N   : S  T  R  F  L  I  Q  Q  C  M  L  L  K  L  K  T  R  M  L  I  P  L  T  V  F  R :   E  V  I  R  I  H  *  K  *  C  Q  H  F  S  C  *  *  L  L  E  E  L  G  T  P  *  F  V  H  L  L  E  L  F  I  L  Y  L  A  I  S  T  S  L  V  I  P  L  A  I  P  K  I  G  L  L  L   : G  N  T  I  S  W  Q  L  W  H  *  *  F  A  Q  H  L  V  E  L  I  F  L  C  H  E  Y  *  S  Q  I  E  *  P  P  C  N  S  L  Y  F  Q  *  E  M  M  S  F  L  C  L  F  C  H  *  Y  E  L  N  W  Y  F  L   : *  K  K  K  K   </second_frame>
            <third_frame>   R  Q  :  R  D  L  E  *  V  N  I  N  K  P  H  L  N  A  K  R  S  I  N  S  P  F  S  H  T  S  S  Q  N  T  K  S  E  K  N  H  G  R  S  *  I  P  P  Q  R  I  W  I  C  N  S  C  S  C  R  L  L  F  L  Q  L  L  D  V  L  S  S  R  Q  S  P  Q  T  :  V  Q  G  S  L  S  N  N  V  C  Y  *  S  *  K  Q  E  C  *  F  L  *  L  C  S   : E  R  S  S  E  F  I  R  N  D  A  N  I  F  H  A  D  D  C  W  R  N  *  A  P  L  D  L  C  I  S  W  S  C  L  Y  C  I  S  L  F  L  L  H  W  L  F  H  W  R  S  P  K  S  A  Y  S  W  :  E  I  Q  F  L  G  N  Y  G  T  D  D  L  R  S  I  L  W  S  *  F  S  Y  V  M  N  I  S  L  K  *  S  N  L  L  V  I  P  F  I  S  S  K  K  *  C  L  F  Y  V  C  F  V  I  N  M  N  *  I  G  T  F  C  :  E  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100604" stop="100408"/>
                    <exon start="100235" stop="100160"/>
                    <exon start="100072" stop="99900"/>
                    <exon start="99307" stop="99232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLTSTQSEVSILPFLILPLKTPNRKKTMAGVEFLPKEYGYVILALVVYCFFNFWMSFQVGKARKQYKVPYPTMYATEAENKNANSFNCVQRGHQNSLEMMPTFFMLMIVGGIRHPLICASLGAVYIVSRYFYFTGYSTGDPQNRLTLGKYNFLAIMALMICAASCGVNFLMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="100237" e_stop="100160"/>
            <exon e_start="100072" e_stop="99596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100237" e_stop="100160" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100159" i_stop="100073" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100072" e_stop="99596" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100237" stop="100160"/>
              <exon start="100072" stop="99596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTACAAGGTTCCTTATCCAACAATGTATGCTACTGAAGCTGAAAACAAGAATGCTAATTCCTTTAACTGTGTTCAG : AGAGGTCATCAGAATTCATTAGAAATGATGCCAACATTTTTCATGCTGATGATTGTTGGAGGAATTAGGCACCCCTTGATTTGTGCATCTCTTGGAGCTGTTTATATTGTATCTCGCTATTTCTACTTCACTGGTTATTCCACTGGCGATCCCCAAAATCGGCTTACTCTTGGGTTAGTCTCTCGTCCAGTTTTCGTTGAATGCACATTTTCATTTAGATTGAATAGTGCTAACAAATTGAGTACCCAAAAATGTCAAAGAAGGAAAACAAAAACTGCTCTGTATGAAGTAGTGAACTGAGTCTTTTACTTGCTCTTGCCTAATGCCCTGACTAAGAAACATTAATTGAATTATTATGATCTTGTTATGATGGTGGGGGTAAAATTTATCCAGGTCGATGAATGGAAGTCAAGTGTATTTCATACATACATTTGTCACTTTCATGGTTAATTTTTAACTGTCACAGGCCATTTTTTT</gDNA_template>
            <first_frame> R  Y  K  V  P  Y  P  T  M  Y  A  T  E  A  E  N  K  N  A  N  S  F  N  C  V  Q  :  R  G  H  Q  N  S  L  E  M  M  P  T  F  F  M  L  M  I  V  G  G  I  R  H  P  L  I  C  A  S  L  G  A  V  Y  I  V  S  R  Y  F  Y  F  T  G  Y  S  T  G  D  P  Q  N  R  L  T  L  G  L  V  S  R  P  V  F  V  E  C  T  F  S  F  R  L  N  S  A  N  K  L  S  T  Q  K  C  Q  R  R  K  T  K  T  A  L  Y  E  V  V  N  *  V  F  Y  L  L  L  P  N  A  L  T  K  K  H  *  L  N  Y  Y  D  L  V  M  M  V  G  V  K  F  I  Q  V  D  E  W  K  S  S  V  F  H  T  Y  I  C  H  F  H  G  *  F  L  T  V  T  G  H  F  F </first_frame>
            <second_frame>  G  T  R  F  L  I  Q  Q  C  M  L  L  K  L  K  T  R  M  L  I  P  L  T  V  F  R :   E  V  I  R  I  H  *  K  *  C  Q  H  F  S  C  *  *  L  L  E  E  L  G  T  P  *  F  V  H  L  L  E  L  F  I  L  Y  L  A  I  S  T  S  L  V  I  P  L  A  I  P  K  I  G  L  L  L  G  *  S  L  V  Q  F  S  L  N  A  H  F  H  L  D  *  I  V  L  T  N  *  V  P  K  N  V  K  E  G  K  Q  K  L  L  C  M  K  *  *  T  E  S  F  T  C  S  C  L  M  P  *  L  R  N  I  N  *  I  I  M  I  L  L  *  W  W  G  *  N  L  S  R  S  M  N  G  S  Q  V  Y  F  I  H  T  F  V  T  F  M  V  N  F  *  L  S  Q  A  I  F   </second_frame>
            <third_frame>   V  Q  G  S  L  S  N  N  V  C  Y  *  S  *  K  Q  E  C  *  F  L  *  L  C  S   : E  R  S  S  E  F  I  R  N  D  A  N  I  F  H  A  D  D  C  W  R  N  *  A  P  L  D  L  C  I  S  W  S  C  L  Y  C  I  S  L  F  L  L  H  W  L  F  H  W  R  S  P  K  S  A  Y  S  W  V  S  L  S  S  S  F  R  *  M  H  I  F  I  *  I  E  *  C  *  Q  I  E  Y  P  K  M  S  K  K  E  N  K  N  C  S  V  *  S  S  E  L  S  L  L  L  A  L  A  *  C  P  D  *  E  T  L  I  E  L  L  *  S  C  Y  D  G  G  G  K  I  Y  P  G  R  *  M  E  V  K  C  I  S  Y  I  H  L  S  L  S  W  L  I  F  N  C  H  R  P  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100237" stop="100160"/>
                    <exon start="100072" stop="99773"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYKVPYPTMYATEAENKNANSFNCVQRGHQNSLEMMPTFFMLMIVGGIRHPLICASLGAVYIVSRYFYFTGYSTGDPQNRLTLGLVSRPVFVECTFSFRLNSANKLSTQKCQRRKTKTALYEVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="114860" PGL_stop="110788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114860" e_stop="113703"/>
            <exon e_start="112972" e_stop="112891"/>
            <exon e_start="112691" e_stop="112595"/>
            <exon e_start="112445" e_stop="112382"/>
            <exon e_start="112295" e_stop="112239"/>
            <exon e_start="112128" e_stop="112091"/>
            <exon e_start="112007" e_stop="111926"/>
            <exon e_start="111355" e_stop="110872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.061" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="114860" e_stop="113703" e_length="1158"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113702" i_stop="112973" i_length="730"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112972" e_stop="112891" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.061" acc_prob="0.798">
            <gDNA_intron_boundary i_start="112890" i_stop="112692" i_length="199"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112691" e_stop="112595" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112594" i_stop="112446" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112445" e_stop="112382" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112381" i_stop="112296" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112295" e_stop="112239" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.887" acc_prob="0.924">
            <gDNA_intron_boundary i_start="112238" i_stop="112129" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112128" e_stop="112091" e_length="38"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="112090" i_stop="112008" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112007" e_stop="111926" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111925" i_stop="111356" i_length="570"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="111355" e_stop="110872" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114860" stop="113703"/>
              <exon start="112972" stop="112891"/>
              <exon start="112691" stop="112595"/>
              <exon start="112445" stop="112382"/>
              <exon start="112295" stop="112239"/>
              <exon start="112128" stop="112091"/>
              <exon start="112007" stop="111926"/>
              <exon start="111355" stop="110919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114860" stop="114367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114849" stop="114365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114793" stop="114163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114481" stop="114094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="113862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="113970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114433" stop="113703"/>
              <exon start="112972" stop="112891"/>
              <exon start="112691" stop="112621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114318" stop="113779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113911" stop="113703"/>
              <exon start="112972" stop="112891"/>
              <exon start="112691" stop="112595"/>
              <exon start="112445" stop="112382"/>
              <exon start="112295" stop="112239"/>
              <exon start="112128" stop="112091"/>
              <exon start="112007" stop="111926"/>
              <exon start="111355" stop="111095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112123" stop="112091"/>
              <exon start="112007" stop="111926"/>
              <exon start="111355" stop="110872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320946" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTGTGTGTGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAG : CTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTG : GAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATTGACAGGCTTATGGAGCTCTACATGAG : ATATTCCGATAGAGTAAAACTTGAGTCTGAACGGTTTGACCAGCTTGAACTTGATGATTTGGAG : ATGGATGAAGACGAGAAATACAATAGAAAGTTAGAAGCTGGTCTTTATACCCTTCAG : TTGATAGCTGTTATTCTGGGTCATCTTTGGACATCTGA : ACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAG : GAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAGAAAATGCTTTCAGTAATTAGCTTATTGGTGAATGTCTAAATGACTTGCAAAATTTTCATTTCCA</gDNA_template>
            <first_frame> *  F  V  C  E  K  L  F  C  C  Y  W  G  S  *  G  F  W  P  E  A  M  E  A  A  K  R  K  R  N  S  A  E  Y  E  E  D  E  Y  D  T  F  K  P  P  P  P  P  S  S  A  A  A  N  G  G  I  D  L  S  L  L  E  A  L  E  K  S  Q  Q  N  P  V  E  V  L  D  I  K  T  V  K  K  L  V  L  A  F  E  R  R  L  K  E  N  I  A  A  R  L  K  Y  P  D  Q  P  E  K  F  A  D  S  E  V  E  L  H  E  E  I  E  K  L  K  I  L  A  G  G  P  E  F  Y  P  E  L  V  N  L  G  T  I  A  S  I  T  S  L  L  N  H  E  N  T  D  I  A  I  D  V  V  G  L  L  Q  D  L  T  D  E  D  V  L  E  D  N  D  E  P  A  Q  I  L  V  D  S  L  V  E  N  N  A  L  E  L  L  V  Q  L  L  G  K  M  S  D  S  D  P  D  E  S  A  A  I  Y  S  I  L  A  T  V  E  N  F  I  E  V  K  P  S  V  A  E  L  V  C  E  R  T  K  L  M  K  W  L  L  T  R  I  K  V  R  E  F  D  G  N  K  Q  Y  A  S  E  I  L  A  I  L  L  Q  S  S  T  A  N  Q  K  R  L  G  Q  L  N  G  V  D  A  L  L  Q  A  V  A  M  Y  K  S  K  D  P  K  T  P  D  E  E  E  M  V  E  N  L  F  D  A  L  C  C  L  L  M  P  L  E  N  K  E  K  F  V  K  S  E  G  V  E  L  M  I  I  I  M  N  Q  K  K  M  C  Y  G  S  A  I  R  A  L  D  F  A  M  T  N  Y  P  P  A  C  E  R  F  V  D  V  M  G  L  K  T  A  F  P  A  F  M  G  K  :  L  P  L  S  K  K  N  K  K  R  Y  K  E  E  L  E  E  R  L  V  S  L  V  A  S  L  F   : G  G  I  L  R  G  S  R  R  D  R  L  L  S  K  F  V  E  N  E  C  E  K  I  D  R  L  M  E  L  Y  M  R :   Y  S  D  R  V  K  L  E  S  E  R  F  D  Q  L  E  L  D  D  L  E  :  M  D  E  D  E  K  Y  N  R  K  L  E  A  G  L  Y  T  L  Q  :  L  I  A  V  I  L  G  H  L  W  T  S  E :   H  P  R  I  R  A  R  I  D  L  L  L  K  Q  Q  K  L  T  K  Q  D  V  K  D  I  L  Q  :  E  Y  H  D  N  I  G  D  L  E  G  P  E  E  K  E  R  G  Q  S  K  I  Q  R  F  I  S  S  F  *  P  *  Y  S  *  K  S  T  R  Y  I  I  G  M  M  C  K  L  W  L  F  *  K  Y  *  D  D  V  L  S  *  S  C  H  F  I  L  *  C  N  V  *  E  H  S  Y  H  L  L  L  R  V  D  S  F  D  *  R  S  V  S  T  E  C  D  S  V  *  F  V  T  L  Q  L  V  V  L  P  S  V  S  S  V  L  C  G  A  C  Y  V  S  F  H  H  P  K  P  G  T  L  D  G  Y  S  I  Q  Y  S  L  *  K  M  L  S  V  I  S  L  L  V  N  V  *  M  T  C  K  I  F  I  S  </first_frame>
            <second_frame>  D  L  C  V  R  S  S  S  A  A  T  G  G  A  K  G  F  G  Q  K  L  W  K  Q  Q  N  A  S  E  T  L  P  S  T  K  K  M  S  T  T  H  S  N  H  R  R  R  R  P  Q  P  P  Q  T  E  G  S  T  F  H  C  S  K  P  *  K  N  L  N  K  T  L  W  K  F  S  I  S  K  Q  *  K  N  S  S  L  H  S  N  A  V  L  R  R  T  L  L  H  V  S  S  T  R  T  N  Q  K  S  S  R  I  P  K  S  S  S  M  K  K  S  K  S  S  K  Y  S  P  E  A  P  N  F  T  R  N  S  *  I  S  G  P  L  R  L  S  P  A  S  S  I  T  K  T  L  T  S  L  L  T  L  S  A  Y  Y  K  T  *  P  T  R  M  F  S  R  T  T  T  S  R  R  K  F  *  L  I  H  W  L  R  T  M  R  *  N  C  S  F  S  F  *  V  K  C  L  T  P  I  R  T  S  P  L  P  Y  I  V  Y  S  R  L  L  R  I  L  L  K  *  N  P  R  W  R  N  L  Y  V  K  G  L  S  *  *  S  G  C  *  Q  E  *  R  *  E  N  L  M  E  T  S  S  M  H  R  R  F  W  L  F  C  C  R  A  A  R  P  I  R  R  D  *  G  N  *  T  V  W  T  H  C  Y  K  L  *  Q  C  I  N  R  R  T  L  R  L  Q  M  R  K  R  W  L  R  T  C  L  T  P  C  V  V  C  *  C  L  W  R  I  K  R  S  L  *  N  L  K  V  W  N  *  *  S  L  L  *  I  R  R  K  C  A  M  D  Q  L  *  G  R  W  I  L  Q  *  L  I  I  L  Q  H  V  R  G  L  W  M  *  W  G  *  R  L  H  F  L  L  L  W  V  S :   C  L  *  A  K  R  T  R  N  A  T  K  K  N  W  K  S  V  L  Y  H  L  W  L  P  Y  L  :  E  E  S  *  E  V  L  E  G  I  D  C  *  V  S  S  W  R  M  S  A  K  K  L  T  G  L  W  S  S  T  *   : D  I  P  I  E  *  N  L  S  L  N  G  L  T  S  L  N  L  M  I  W  R :   W  M  K  T  R  N  T  I  E  S  *  K  L  V  F  I  P  F  S :   *  *  L  L  F  W  V  I  F  G  H  L   : N  I  L  E  S  E  Q  G  L  T  F  C  *  S  N  K  S  *  L  S  K  M  *  K  I  Y  S  R :   N  I  M  T  T  *  G  I  W  K  G  Q  K  R  R  R  G  D  N  Q  R  F  K  G  S  Y  R  P  F  D  H  N  T  V  E  K  A  H  V  I  S  L  E  *  C  V  N  S  G  Y  F  K  S  I  K  M  M  S  S  V  S  H  V  T  L  F  F  D  V  M  C  K  S  I  A  T  T  C  Y  *  G  L  T  V  L  T  E  D  L  L  V  L  N  A  I  Q  C  N  L  *  H  F  N  *  *  F  Y  P  V  *  V  Q  C  F  V  E  H  V  M  *  A  F  T  I  P  N  L  A  L  W  M  V  I  L  F  S  I  L  F  R  K  C  F  Q  *  L  A  Y  W  *  M  S  K  *  L  A  K  F  S  F  P </second_frame>
            <third_frame>   I  C  V  *  E  A  L  L  L  L  L  G  E  L  R  V  L  A  R  S  Y  G  S  S  K  T  Q  A  K  L  C  R  V  R  R  R  *  V  R  H  I  Q  T  T  A  A  A  V  L  S  R  R  K  R  R  D  R  P  F  T  A  R  S  L  R  K  I  S  T  K  P  C  G  S  S  R  Y  Q  N  S  E  K  T  R  P  C  I  R  T  P  S  *  G  E  H  C  C  T  S  Q  V  P  G  P  T  R  K  V  R  G  F  R  S  R  A  P  *  R  N  R  K  A  Q  N  T  R  R  R  P  R  I  L  P  G  T  R  E  S  R  D  H  C  V  Y  H  Q  P  P  Q  S  R  K  H  *  H  R  Y  *  R  C  R  L  I  T  R  P  D  R  R  G  C  S  R  G  Q  R  R  A  G  A  N  F  S  *  F  I  G  *  E  Q  C  V  R  I  A  R  S  A  S  R  *  N  V  *  L  R  S  G  R  V  R  C  H  I  *  Y  T  R  D  C  *  E  F  Y  *  S  E  T  L  G  G  G  T  C  M  *  K  D  *  V  N  E  V  V  A  D  K  N  K  G  K  R  I  *  W  K  Q  A  V  C  I  G  D  F  G  Y  F  A  A  E  Q  H  G  Q  S  E  E  I  R  A  I  E  R  C  G  R  I  V  T  S  C  S  N  V  *  I  E  G  P  *  D  S  R  *  G  R  D  G  *  E  L  V  *  R  L  V  L  F  V  N  A  F  G  E  *  R  E  V  C  E  I  *  R  C  G  I  D  D  H  Y  Y  E  S  E  E  N  V  L  W  I  S  Y  K  G  V  G  F  C  N  D  *  L  S  S  S  M  *  E  V  C  G  C  N  G  V  K  D  C  I  S  C  F  Y  G  *   : A  A  S  E  Q  K  E  Q  E  T  L  Q  R  R  I  G  R  A  S  C  I  T  C  G  F  L  I  W :   R  N  L  K  R  F  *  K  G  *  I  V  K  *  V  R  G  E  *  V  R  K  N  *  Q  A  Y  G  A  L  H  E  :  I  F  R  *  S  K  T  *  V  *  T  V  *  P  A  *  T  *  *  F  G   : D  G  *  R  R  E  I  Q  *  K  V  R  S  W  S  L  Y  P  S   : V  D  S  C  Y  S  G  S  S  L  D  I  *  :  T  S  S  N  Q  S  K  D  *  P  F  A  K  A  T  K  A  D  *  A  R  C  K  R  Y  T  P   : G  I  S  *  Q  H  R  G  S  G  R  A  R  R  E  G  E  G  T  I  K  D  S  K  V  H  I  V  L  L  T  I  I  Q  L  K  K  H  T  L  Y  H  W  N  D  V  *  T  L  A  I  L  K  V  L  R  *  C  P  Q  L  V  M  S  L  Y  S  L  M  *  C  V  R  A  *  L  P  P  V  I  E  G  *  Q  F  *  L  K  I  C  *  Y  *  M  R  F  S  V  I  C  N  T  S  I  S  S  F  T  Q  C  K  F  S  A  L  W  S  M  L  C  E  L  S  P  S  Q  T  W  H  F  G  W  L  F  Y  S  V  F  S  L  E  N  A  F  S  N  *  L  I  G  E  C  L  N  D  L  Q  N  F  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114815" stop="113703"/>
                    <exon start="112972" stop="112891"/>
                    <exon start="112691" stop="112595"/>
                    <exon start="112445" stop="112382"/>
                    <exon start="112295" stop="112239"/>
                    <exon start="112128" stop="112091"/>
                    <exon start="112007" stop="111926"/>
                    <exon start="111355" stop="111266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1620</number_coding_nucleotides>
                  <number_encoded_amino_acids>540</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFWPEAMEAAKRKRNSAEYEEDEYDTFKPPPPPSSAAANGGIDLSLLEALEKSQQNPVEVLDIKTVKKLVLAFERRLKENIAARLKYPDQPEKFADSEVELHEEIEKLKILAGGPEFYPELVNLGTIASITSLLNHENTDIAIDVVGLLQDLTDEDVLEDNDEPAQILVDSLVENNALELLVQLLGKMSDSDPDESAAIYSILATVENFIEVKPSVAELVCERTKLMKWLLTRIKVREFDGNKQYASEILAILLQSSTANQKRLGQLNGVDALLQAVAMYKSKDPKTPDEEEMVENLFDALCCLLMPLENKEKFVKSEGVELMIIIMNQKKMCYGSAIRALDFAMTNYPPACERFVDVMGLKTAFPAFMGKLPLSKKNKKRYKEELEERLVSLVASLFGGILRGSRRDRLLSKFVENECEKIDRLMELYMRYSDRVKLESERFDQLELDDLEMDEDEKYNRKLEAGLYTLQLIAVILGHLWTSEHPRIRARIDLLLKQQKLTKQDVKDILQEYHDNIGDLEGPEEKERGQSKIQRFISSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="114860" e_stop="113703"/>
            <exon e_start="112972" e_stop="112891"/>
            <exon e_start="112691" e_stop="112595"/>
            <exon e_start="112445" e_stop="112382"/>
            <exon e_start="112295" e_stop="112239"/>
            <exon e_start="112128" e_stop="112091"/>
            <exon e_start="112007" e_stop="111926"/>
            <exon e_start="111355" e_stop="110931"/>
            <exon e_start="110823" e_stop="110788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.061" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.592" e_score="0.998"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114860" e_stop="113703" e_length="1158"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113702" i_stop="112973" i_length="730"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112972" e_stop="112891" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.061" acc_prob="0.798">
            <gDNA_intron_boundary i_start="112890" i_stop="112692" i_length="199"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112691" e_stop="112595" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112594" i_stop="112446" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112445" e_stop="112382" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112381" i_stop="112296" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112295" e_stop="112239" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.887" acc_prob="0.924">
            <gDNA_intron_boundary i_start="112238" i_stop="112129" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112128" e_stop="112091" e_length="38"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="112090" i_stop="112008" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112007" e_stop="111926" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111925" i_stop="111356" i_length="570"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="111355" e_stop="110931" e_length="425"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.592">
            <gDNA_intron_boundary i_start="110930" i_stop="110824" i_length="107"/>
          </intron>
          <exon e_serial="9" e_score="0.500">
            <gDNA_exon_boundary e_start="110823" e_stop="110788" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114860" stop="114367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114849" stop="114365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114793" stop="114163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114481" stop="114094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="113862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="113970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114433" stop="113703"/>
              <exon start="112972" stop="112891"/>
              <exon start="112691" stop="112621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114318" stop="113779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113911" stop="113703"/>
              <exon start="112972" stop="112891"/>
              <exon start="112691" stop="112595"/>
              <exon start="112445" stop="112382"/>
              <exon start="112295" stop="112239"/>
              <exon start="112128" stop="112091"/>
              <exon start="112007" stop="111926"/>
              <exon start="111355" stop="111095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111346" stop="110931"/>
              <exon start="110823" stop="110788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTGTGTGTGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAG : CTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTG : GAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATTGACAGGCTTATGGAGCTCTACATGAG : ATATTCCGATAGAGTAAAACTTGAGTCTGAACGGTTTGACCAGCTTGAACTTGATGATTTGGAG : ATGGATGAAGACGAGAAATACAATAGAAAGTTAGAAGCTGGTCTTTATACCCTTCAG : TTGATAGCTGTTATTCTGGGTCATCTTTGGACATCTGA : ACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAG : GAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAGCATGTTATGTGAGCTTTCACCATCCCAAACCTGGCACTTTGGATGGTTATTCTATTCAGTATTCTCTTTAGAAAAT : AAAGTTAGCAATTGAAAAATGCAGACGTGAAAGAAG</gDNA_template>
            <first_frame> *  F  V  C  E  K  L  F  C  C  Y  W  G  S  *  G  F  W  P  E  A  M  E  A  A  K  R  K  R  N  S  A  E  Y  E  E  D  E  Y  D  T  F  K  P  P  P  P  P  S  S  A  A  A  N  G  G  I  D  L  S  L  L  E  A  L  E  K  S  Q  Q  N  P  V  E  V  L  D  I  K  T  V  K  K  L  V  L  A  F  E  R  R  L  K  E  N  I  A  A  R  L  K  Y  P  D  Q  P  E  K  F  A  D  S  E  V  E  L  H  E  E  I  E  K  L  K  I  L  A  G  G  P  E  F  Y  P  E  L  V  N  L  G  T  I  A  S  I  T  S  L  L  N  H  E  N  T  D  I  A  I  D  V  V  G  L  L  Q  D  L  T  D  E  D  V  L  E  D  N  D  E  P  A  Q  I  L  V  D  S  L  V  E  N  N  A  L  E  L  L  V  Q  L  L  G  K  M  S  D  S  D  P  D  E  S  A  A  I  Y  S  I  L  A  T  V  E  N  F  I  E  V  K  P  S  V  A  E  L  V  C  E  R  T  K  L  M  K  W  L  L  T  R  I  K  V  R  E  F  D  G  N  K  Q  Y  A  S  E  I  L  A  I  L  L  Q  S  S  T  A  N  Q  K  R  L  G  Q  L  N  G  V  D  A  L  L  Q  A  V  A  M  Y  K  S  K  D  P  K  T  P  D  E  E  E  M  V  E  N  L  F  D  A  L  C  C  L  L  M  P  L  E  N  K  E  K  F  V  K  S  E  G  V  E  L  M  I  I  I  M  N  Q  K  K  M  C  Y  G  S  A  I  R  A  L  D  F  A  M  T  N  Y  P  P  A  C  E  R  F  V  D  V  M  G  L  K  T  A  F  P  A  F  M  G  K  :  L  P  L  S  K  K  N  K  K  R  Y  K  E  E  L  E  E  R  L  V  S  L  V  A  S  L  F   : G  G  I  L  R  G  S  R  R  D  R  L  L  S  K  F  V  E  N  E  C  E  K  I  D  R  L  M  E  L  Y  M  R :   Y  S  D  R  V  K  L  E  S  E  R  F  D  Q  L  E  L  D  D  L  E  :  M  D  E  D  E  K  Y  N  R  K  L  E  A  G  L  Y  T  L  Q  :  L  I  A  V  I  L  G  H  L  W  T  S  E :   H  P  R  I  R  A  R  I  D  L  L  L  K  Q  Q  K  L  T  K  Q  D  V  K  D  I  L  Q  :  E  Y  H  D  N  I  G  D  L  E  G  P  E  E  K  E  R  G  Q  S  K  I  Q  R  F  I  S  S  F  *  P  *  Y  S  *  K  S  T  R  Y  I  I  G  M  M  C  K  L  W  L  F  *  K  Y  *  D  D  V  L  S  *  S  C  H  F  I  L  *  C  N  V  *  E  H  S  Y  H  L  L  L  R  V  D  S  F  D  *  R  S  V  S  T  E  C  D  S  V  *  F  V  T  L  Q  L  V  V  L  P  S  V  S  S  V  L  C  G  A  C  Y  V  S  F  H  H  P  K  P  G  T  L  D  G  Y  S  I  Q  Y  S  L  *  K  I :   K  L  A  I  E  K  C  R  R  E  R   </first_frame>
            <second_frame>  D  L  C  V  R  S  S  S  A  A  T  G  G  A  K  G  F  G  Q  K  L  W  K  Q  Q  N  A  S  E  T  L  P  S  T  K  K  M  S  T  T  H  S  N  H  R  R  R  R  P  Q  P  P  Q  T  E  G  S  T  F  H  C  S  K  P  *  K  N  L  N  K  T  L  W  K  F  S  I  S  K  Q  *  K  N  S  S  L  H  S  N  A  V  L  R  R  T  L  L  H  V  S  S  T  R  T  N  Q  K  S  S  R  I  P  K  S  S  S  M  K  K  S  K  S  S  K  Y  S  P  E  A  P  N  F  T  R  N  S  *  I  S  G  P  L  R  L  S  P  A  S  S  I  T  K  T  L  T  S  L  L  T  L  S  A  Y  Y  K  T  *  P  T  R  M  F  S  R  T  T  T  S  R  R  K  F  *  L  I  H  W  L  R  T  M  R  *  N  C  S  F  S  F  *  V  K  C  L  T  P  I  R  T  S  P  L  P  Y  I  V  Y  S  R  L  L  R  I  L  L  K  *  N  P  R  W  R  N  L  Y  V  K  G  L  S  *  *  S  G  C  *  Q  E  *  R  *  E  N  L  M  E  T  S  S  M  H  R  R  F  W  L  F  C  C  R  A  A  R  P  I  R  R  D  *  G  N  *  T  V  W  T  H  C  Y  K  L  *  Q  C  I  N  R  R  T  L  R  L  Q  M  R  K  R  W  L  R  T  C  L  T  P  C  V  V  C  *  C  L  W  R  I  K  R  S  L  *  N  L  K  V  W  N  *  *  S  L  L  *  I  R  R  K  C  A  M  D  Q  L  *  G  R  W  I  L  Q  *  L  I  I  L  Q  H  V  R  G  L  W  M  *  W  G  *  R  L  H  F  L  L  L  W  V  S :   C  L  *  A  K  R  T  R  N  A  T  K  K  N  W  K  S  V  L  Y  H  L  W  L  P  Y  L  :  E  E  S  *  E  V  L  E  G  I  D  C  *  V  S  S  W  R  M  S  A  K  K  L  T  G  L  W  S  S  T  *   : D  I  P  I  E  *  N  L  S  L  N  G  L  T  S  L  N  L  M  I  W  R :   W  M  K  T  R  N  T  I  E  S  *  K  L  V  F  I  P  F  S :   *  *  L  L  F  W  V  I  F  G  H  L   : N  I  L  E  S  E  Q  G  L  T  F  C  *  S  N  K  S  *  L  S  K  M  *  K  I  Y  S  R :   N  I  M  T  T  *  G  I  W  K  G  Q  K  R  R  R  G  D  N  Q  R  F  K  G  S  Y  R  P  F  D  H  N  T  V  E  K  A  H  V  I  S  L  E  *  C  V  N  S  G  Y  F  K  S  I  K  M  M  S  S  V  S  H  V  T  L  F  F  D  V  M  C  K  S  I  A  T  T  C  Y  *  G  L  T  V  L  T  E  D  L  L  V  L  N  A  I  Q  C  N  L  *  H  F  N  *  *  F  Y  P  V  *  V  Q  C  F  V  E  H  V  M  *  A  F  T  I  P  N  L  A  L  W  M  V  I  L  F  S  I  L  F  R  K   : *  S  *  Q  L  K  N  A  D  V  K  E  </second_frame>
            <third_frame>   I  C  V  *  E  A  L  L  L  L  L  G  E  L  R  V  L  A  R  S  Y  G  S  S  K  T  Q  A  K  L  C  R  V  R  R  R  *  V  R  H  I  Q  T  T  A  A  A  V  L  S  R  R  K  R  R  D  R  P  F  T  A  R  S  L  R  K  I  S  T  K  P  C  G  S  S  R  Y  Q  N  S  E  K  T  R  P  C  I  R  T  P  S  *  G  E  H  C  C  T  S  Q  V  P  G  P  T  R  K  V  R  G  F  R  S  R  A  P  *  R  N  R  K  A  Q  N  T  R  R  R  P  R  I  L  P  G  T  R  E  S  R  D  H  C  V  Y  H  Q  P  P  Q  S  R  K  H  *  H  R  Y  *  R  C  R  L  I  T  R  P  D  R  R  G  C  S  R  G  Q  R  R  A  G  A  N  F  S  *  F  I  G  *  E  Q  C  V  R  I  A  R  S  A  S  R  *  N  V  *  L  R  S  G  R  V  R  C  H  I  *  Y  T  R  D  C  *  E  F  Y  *  S  E  T  L  G  G  G  T  C  M  *  K  D  *  V  N  E  V  V  A  D  K  N  K  G  K  R  I  *  W  K  Q  A  V  C  I  G  D  F  G  Y  F  A  A  E  Q  H  G  Q  S  E  E  I  R  A  I  E  R  C  G  R  I  V  T  S  C  S  N  V  *  I  E  G  P  *  D  S  R  *  G  R  D  G  *  E  L  V  *  R  L  V  L  F  V  N  A  F  G  E  *  R  E  V  C  E  I  *  R  C  G  I  D  D  H  Y  Y  E  S  E  E  N  V  L  W  I  S  Y  K  G  V  G  F  C  N  D  *  L  S  S  S  M  *  E  V  C  G  C  N  G  V  K  D  C  I  S  C  F  Y  G  *   : A  A  S  E  Q  K  E  Q  E  T  L  Q  R  R  I  G  R  A  S  C  I  T  C  G  F  L  I  W :   R  N  L  K  R  F  *  K  G  *  I  V  K  *  V  R  G  E  *  V  R  K  N  *  Q  A  Y  G  A  L  H  E  :  I  F  R  *  S  K  T  *  V  *  T  V  *  P  A  *  T  *  *  F  G   : D  G  *  R  R  E  I  Q  *  K  V  R  S  W  S  L  Y  P  S   : V  D  S  C  Y  S  G  S  S  L  D  I  *  :  T  S  S  N  Q  S  K  D  *  P  F  A  K  A  T  K  A  D  *  A  R  C  K  R  Y  T  P   : G  I  S  *  Q  H  R  G  S  G  R  A  R  R  E  G  E  G  T  I  K  D  S  K  V  H  I  V  L  L  T  I  I  Q  L  K  K  H  T  L  Y  H  W  N  D  V  *  T  L  A  I  L  K  V  L  R  *  C  P  Q  L  V  M  S  L  Y  S  L  M  *  C  V  R  A  *  L  P  P  V  I  E  G  *  Q  F  *  L  K  I  C  *  Y  *  M  R  F  S  V  I  C  N  T  S  I  S  S  F  T  Q  C  K  F  S  A  L  W  S  M  L  C  E  L  S  P  S  Q  T  W  H  F  G  W  L  F  Y  S  V  F  S  L  E  N  :  K  V  S  N  *  K  M  Q  T  *  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114815" stop="113703"/>
                    <exon start="112972" stop="112891"/>
                    <exon start="112691" stop="112595"/>
                    <exon start="112445" stop="112382"/>
                    <exon start="112295" stop="112239"/>
                    <exon start="112128" stop="112091"/>
                    <exon start="112007" stop="111926"/>
                    <exon start="111355" stop="111266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1620</number_coding_nucleotides>
                  <number_encoded_amino_acids>540</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFWPEAMEAAKRKRNSAEYEEDEYDTFKPPPPPSSAAANGGIDLSLLEALEKSQQNPVEVLDIKTVKKLVLAFERRLKENIAARLKYPDQPEKFADSEVELHEEIEKLKILAGGPEFYPELVNLGTIASITSLLNHENTDIAIDVVGLLQDLTDEDVLEDNDEPAQILVDSLVENNALELLVQLLGKMSDSDPDESAAIYSILATVENFIEVKPSVAELVCERTKLMKWLLTRIKVREFDGNKQYASEILAILLQSSTANQKRLGQLNGVDALLQAVAMYKSKDPKTPDEEEMVENLFDALCCLLMPLENKEKFVKSEGVELMIIIMNQKKMCYGSAIRALDFAMTNYPPACERFVDVMGLKTAFPAFMGKLPLSKKNKKRYKEELEERLVSLVASLFGGILRGSRRDRLLSKFVENECEKIDRLMELYMRYSDRVKLESERFDQLELDDLEMDEDEKYNRKLEAGLYTLQLIAVILGHLWTSEHPRIRARIDLLLKQQKLTKQDVKDILQEYHDNIGDLEGPEEKERGQSKIQRFISSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="114860" e_stop="113703"/>
            <exon e_start="112972" e_stop="112891"/>
            <exon e_start="112691" e_stop="112595"/>
            <exon e_start="112445" e_stop="112382"/>
            <exon e_start="112295" e_stop="112239"/>
            <exon e_start="112128" e_stop="112091"/>
            <exon e_start="112007" e_stop="111926"/>
            <exon e_start="111355" e_stop="111007"/>
            <exon e_start="110823" e_stop="110803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.061" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.592" e_score="0.963"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114860" e_stop="113703" e_length="1158"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113702" i_stop="112973" i_length="730"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112972" e_stop="112891" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.061" acc_prob="0.798">
            <gDNA_intron_boundary i_start="112890" i_stop="112692" i_length="199"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112691" e_stop="112595" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112594" i_stop="112446" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112445" e_stop="112382" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112381" i_stop="112296" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112295" e_stop="112239" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.887" acc_prob="0.924">
            <gDNA_intron_boundary i_start="112238" i_stop="112129" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112128" e_stop="112091" e_length="38"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="112090" i_stop="112008" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112007" e_stop="111926" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111925" i_stop="111356" i_length="570"/>
          </intron>
          <exon e_serial="8" e_score="0.963">
            <gDNA_exon_boundary e_start="111355" e_stop="111007" e_length="349"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.592">
            <gDNA_intron_boundary i_start="111006" i_stop="110824" i_length="183"/>
          </intron>
          <exon e_serial="9" e_score="0.571">
            <gDNA_exon_boundary e_start="110823" e_stop="110803" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114860" stop="114367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114849" stop="114365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114793" stop="114163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114481" stop="114094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="113862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="113970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114433" stop="113703"/>
              <exon start="112972" stop="112891"/>
              <exon start="112691" stop="112621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114318" stop="113779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113911" stop="113703"/>
              <exon start="112972" stop="112891"/>
              <exon start="112691" stop="112595"/>
              <exon start="112445" stop="112382"/>
              <exon start="112295" stop="112239"/>
              <exon start="112128" stop="112091"/>
              <exon start="112007" stop="111926"/>
              <exon start="111355" stop="111095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112250" stop="112239"/>
              <exon start="112128" stop="112091"/>
              <exon start="112007" stop="111926"/>
              <exon start="111355" stop="111007"/>
              <exon start="110823" stop="110803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTGTGTGTGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGGGTAAG : CTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTGTGGCTTCCTTATTTG : GAGGAATCTTAAGAGGTTCTAGAAGGGATAGATTGTTAAGTAAGTTCGTGGAGAATGAGTGCGAAAAAATTGACAGGCTTATGGAGCTCTACATGAG : ATATTCCGATAGAGTAAAACTTGAGTCTGAACGGTTTGACCAGCTTGAACTTGATGATTTGGAG : ATGGATGAAGACGAGAAATACAATAGAAAGTTAGAAGCTGGTCTTTATACCCTTCAG : TTGATAGCTGTTATTCTGGGTCATCTTTGGACATCTGA : ACATCCTCGAATCAGAGCAAGGATTGACCTTTTGCTAAAGCAACAAAAGCTGACTAAGCAAGATGTAAAAGATATACTCCAG : GAATATCATGACAACATAGGGGATCTGGAAGGGCCAGAAGAGAAGGAGAGGGGACAATCAAAGATTCAAAGGTTCATATCGTCCTTTTGACCATAATACAGTTGAAAAAGCACACGTTATATCATTGGAATGATGTGTAAACTCTGGCTATTTTAAAAGTATTAAGATGATGTCCTCAGTTAGTCATGTCACTTTATTCTTTGATGTAATGTGTAAGAGCATAGCTACCACCTGTTATTGAGGGTTGACAGTTTTGACTGAAGATCTGTTAGTACTGAATGCGATTCAGTGTAATTTGTAACACTTCAATTAGTAGTTTTACCCAGTGTAAGTTCAGTGCTTTGTGGAG : AAAGTTAGCAATTGAAAAATG</gDNA_template>
            <first_frame> *  F  V  C  E  K  L  F  C  C  Y  W  G  S  *  G  F  W  P  E  A  M  E  A  A  K  R  K  R  N  S  A  E  Y  E  E  D  E  Y  D  T  F  K  P  P  P  P  P  S  S  A  A  A  N  G  G  I  D  L  S  L  L  E  A  L  E  K  S  Q  Q  N  P  V  E  V  L  D  I  K  T  V  K  K  L  V  L  A  F  E  R  R  L  K  E  N  I  A  A  R  L  K  Y  P  D  Q  P  E  K  F  A  D  S  E  V  E  L  H  E  E  I  E  K  L  K  I  L  A  G  G  P  E  F  Y  P  E  L  V  N  L  G  T  I  A  S  I  T  S  L  L  N  H  E  N  T  D  I  A  I  D  V  V  G  L  L  Q  D  L  T  D  E  D  V  L  E  D  N  D  E  P  A  Q  I  L  V  D  S  L  V  E  N  N  A  L  E  L  L  V  Q  L  L  G  K  M  S  D  S  D  P  D  E  S  A  A  I  Y  S  I  L  A  T  V  E  N  F  I  E  V  K  P  S  V  A  E  L  V  C  E  R  T  K  L  M  K  W  L  L  T  R  I  K  V  R  E  F  D  G  N  K  Q  Y  A  S  E  I  L  A  I  L  L  Q  S  S  T  A  N  Q  K  R  L  G  Q  L  N  G  V  D  A  L  L  Q  A  V  A  M  Y  K  S  K  D  P  K  T  P  D  E  E  E  M  V  E  N  L  F  D  A  L  C  C  L  L  M  P  L  E  N  K  E  K  F  V  K  S  E  G  V  E  L  M  I  I  I  M  N  Q  K  K  M  C  Y  G  S  A  I  R  A  L  D  F  A  M  T  N  Y  P  P  A  C  E  R  F  V  D  V  M  G  L  K  T  A  F  P  A  F  M  G  K  :  L  P  L  S  K  K  N  K  K  R  Y  K  E  E  L  E  E  R  L  V  S  L  V  A  S  L  F   : G  G  I  L  R  G  S  R  R  D  R  L  L  S  K  F  V  E  N  E  C  E  K  I  D  R  L  M  E  L  Y  M  R :   Y  S  D  R  V  K  L  E  S  E  R  F  D  Q  L  E  L  D  D  L  E  :  M  D  E  D  E  K  Y  N  R  K  L  E  A  G  L  Y  T  L  Q  :  L  I  A  V  I  L  G  H  L  W  T  S  E :   H  P  R  I  R  A  R  I  D  L  L  L  K  Q  Q  K  L  T  K  Q  D  V  K  D  I  L  Q  :  E  Y  H  D  N  I  G  D  L  E  G  P  E  E  K  E  R  G  Q  S  K  I  Q  R  F  I  S  S  F  *  P  *  Y  S  *  K  S  T  R  Y  I  I  G  M  M  C  K  L  W  L  F  *  K  Y  *  D  D  V  L  S  *  S  C  H  F  I  L  *  C  N  V  *  E  H  S  Y  H  L  L  L  R  V  D  S  F  D  *  R  S  V  S  T  E  C  D  S  V  *  F  V  T  L  Q  L  V  V  L  P  S  V  S  S  V  L  C  G   : E  S  *  Q  L  K  N  </first_frame>
            <second_frame>  D  L  C  V  R  S  S  S  A  A  T  G  G  A  K  G  F  G  Q  K  L  W  K  Q  Q  N  A  S  E  T  L  P  S  T  K  K  M  S  T  T  H  S  N  H  R  R  R  R  P  Q  P  P  Q  T  E  G  S  T  F  H  C  S  K  P  *  K  N  L  N  K  T  L  W  K  F  S  I  S  K  Q  *  K  N  S  S  L  H  S  N  A  V  L  R  R  T  L  L  H  V  S  S  T  R  T  N  Q  K  S  S  R  I  P  K  S  S  S  M  K  K  S  K  S  S  K  Y  S  P  E  A  P  N  F  T  R  N  S  *  I  S  G  P  L  R  L  S  P  A  S  S  I  T  K  T  L  T  S  L  L  T  L  S  A  Y  Y  K  T  *  P  T  R  M  F  S  R  T  T  T  S  R  R  K  F  *  L  I  H  W  L  R  T  M  R  *  N  C  S  F  S  F  *  V  K  C  L  T  P  I  R  T  S  P  L  P  Y  I  V  Y  S  R  L  L  R  I  L  L  K  *  N  P  R  W  R  N  L  Y  V  K  G  L  S  *  *  S  G  C  *  Q  E  *  R  *  E  N  L  M  E  T  S  S  M  H  R  R  F  W  L  F  C  C  R  A  A  R  P  I  R  R  D  *  G  N  *  T  V  W  T  H  C  Y  K  L  *  Q  C  I  N  R  R  T  L  R  L  Q  M  R  K  R  W  L  R  T  C  L  T  P  C  V  V  C  *  C  L  W  R  I  K  R  S  L  *  N  L  K  V  W  N  *  *  S  L  L  *  I  R  R  K  C  A  M  D  Q  L  *  G  R  W  I  L  Q  *  L  I  I  L  Q  H  V  R  G  L  W  M  *  W  G  *  R  L  H  F  L  L  L  W  V  S :   C  L  *  A  K  R  T  R  N  A  T  K  K  N  W  K  S  V  L  Y  H  L  W  L  P  Y  L  :  E  E  S  *  E  V  L  E  G  I  D  C  *  V  S  S  W  R  M  S  A  K  K  L  T  G  L  W  S  S  T  *   : D  I  P  I  E  *  N  L  S  L  N  G  L  T  S  L  N  L  M  I  W  R :   W  M  K  T  R  N  T  I  E  S  *  K  L  V  F  I  P  F  S :   *  *  L  L  F  W  V  I  F  G  H  L   : N  I  L  E  S  E  Q  G  L  T  F  C  *  S  N  K  S  *  L  S  K  M  *  K  I  Y  S  R :   N  I  M  T  T  *  G  I  W  K  G  Q  K  R  R  R  G  D  N  Q  R  F  K  G  S  Y  R  P  F  D  H  N  T  V  E  K  A  H  V  I  S  L  E  *  C  V  N  S  G  Y  F  K  S  I  K  M  M  S  S  V  S  H  V  T  L  F  F  D  V  M  C  K  S  I  A  T  T  C  Y  *  G  L  T  V  L  T  E  D  L  L  V  L  N  A  I  Q  C  N  L  *  H  F  N  *  *  F  Y  P  V  *  V  Q  C  F  V  E  :  K  V  S  N  *  K  M </second_frame>
            <third_frame>   I  C  V  *  E  A  L  L  L  L  L  G  E  L  R  V  L  A  R  S  Y  G  S  S  K  T  Q  A  K  L  C  R  V  R  R  R  *  V  R  H  I  Q  T  T  A  A  A  V  L  S  R  R  K  R  R  D  R  P  F  T  A  R  S  L  R  K  I  S  T  K  P  C  G  S  S  R  Y  Q  N  S  E  K  T  R  P  C  I  R  T  P  S  *  G  E  H  C  C  T  S  Q  V  P  G  P  T  R  K  V  R  G  F  R  S  R  A  P  *  R  N  R  K  A  Q  N  T  R  R  R  P  R  I  L  P  G  T  R  E  S  R  D  H  C  V  Y  H  Q  P  P  Q  S  R  K  H  *  H  R  Y  *  R  C  R  L  I  T  R  P  D  R  R  G  C  S  R  G  Q  R  R  A  G  A  N  F  S  *  F  I  G  *  E  Q  C  V  R  I  A  R  S  A  S  R  *  N  V  *  L  R  S  G  R  V  R  C  H  I  *  Y  T  R  D  C  *  E  F  Y  *  S  E  T  L  G  G  G  T  C  M  *  K  D  *  V  N  E  V  V  A  D  K  N  K  G  K  R  I  *  W  K  Q  A  V  C  I  G  D  F  G  Y  F  A  A  E  Q  H  G  Q  S  E  E  I  R  A  I  E  R  C  G  R  I  V  T  S  C  S  N  V  *  I  E  G  P  *  D  S  R  *  G  R  D  G  *  E  L  V  *  R  L  V  L  F  V  N  A  F  G  E  *  R  E  V  C  E  I  *  R  C  G  I  D  D  H  Y  Y  E  S  E  E  N  V  L  W  I  S  Y  K  G  V  G  F  C  N  D  *  L  S  S  S  M  *  E  V  C  G  C  N  G  V  K  D  C  I  S  C  F  Y  G  *   : A  A  S  E  Q  K  E  Q  E  T  L  Q  R  R  I  G  R  A  S  C  I  T  C  G  F  L  I  W :   R  N  L  K  R  F  *  K  G  *  I  V  K  *  V  R  G  E  *  V  R  K  N  *  Q  A  Y  G  A  L  H  E  :  I  F  R  *  S  K  T  *  V  *  T  V  *  P  A  *  T  *  *  F  G   : D  G  *  R  R  E  I  Q  *  K  V  R  S  W  S  L  Y  P  S   : V  D  S  C  Y  S  G  S  S  L  D  I  *  :  T  S  S  N  Q  S  K  D  *  P  F  A  K  A  T  K  A  D  *  A  R  C  K  R  Y  T  P   : G  I  S  *  Q  H  R  G  S  G  R  A  R  R  E  G  E  G  T  I  K  D  S  K  V  H  I  V  L  L  T  I  I  Q  L  K  K  H  T  L  Y  H  W  N  D  V  *  T  L  A  I  L  K  V  L  R  *  C  P  Q  L  V  M  S  L  Y  S  L  M  *  C  V  R  A  *  L  P  P  V  I  E  G  *  Q  F  *  L  K  I  C  *  Y  *  M  R  F  S  V  I  C  N  T  S  I  S  S  F  T  Q  C  K  F  S  A  L  W  R :   K  L  A  I  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114815" stop="113703"/>
                    <exon start="112972" stop="112891"/>
                    <exon start="112691" stop="112595"/>
                    <exon start="112445" stop="112382"/>
                    <exon start="112295" stop="112239"/>
                    <exon start="112128" stop="112091"/>
                    <exon start="112007" stop="111926"/>
                    <exon start="111355" stop="111266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1620</number_coding_nucleotides>
                  <number_encoded_amino_acids>540</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFWPEAMEAAKRKRNSAEYEEDEYDTFKPPPPPSSAAANGGIDLSLLEALEKSQQNPVEVLDIKTVKKLVLAFERRLKENIAARLKYPDQPEKFADSEVELHEEIEKLKILAGGPEFYPELVNLGTIASITSLLNHENTDIAIDVVGLLQDLTDEDVLEDNDEPAQILVDSLVENNALELLVQLLGKMSDSDPDESAAIYSILATVENFIEVKPSVAELVCERTKLMKWLLTRIKVREFDGNKQYASEILAILLQSSTANQKRLGQLNGVDALLQAVAMYKSKDPKTPDEEEMVENLFDALCCLLMPLENKEKFVKSEGVELMIIIMNQKKMCYGSAIRALDFAMTNYPPACERFVDVMGLKTAFPAFMGKLPLSKKNKKRYKEELEERLVSLVASLFGGILRGSRRDRLLSKFVENECEKIDRLMELYMRYSDRVKLESERFDQLELDDLEMDEDEKYNRKLEAGLYTLQLIAVILGHLWTSEHPRIRARIDLLLKQQKLTKQDVKDILQEYHDNIGDLEGPEEKERGQSKIQRFISSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="114860" e_stop="113708"/>
            <exon e_start="112972" e_stop="112906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="114860" e_stop="113708" e_length="1153"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113707" i_stop="112973" i_length="735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112972" e_stop="112906" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114860" stop="114367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114849" stop="114365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114793" stop="114163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114481" stop="114094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="113862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114480" stop="113970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114318" stop="113779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114223" stop="113708"/>
              <exon start="112972" stop="112906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTGTGTGTGAGAAGCTCTTCTGCTGCTACTGGGGGAGCTAAGGGTTTTGGCCAGAAGCTATGGAAGCAGCAAAACGCAAGCGAAACTCTGCCGAGTACGAAGAAGATGAGTACGACACATTCAAACCACCGCCGCCGCCGTCCTCAGCCGCCGCAAACGGAGGGATCGACCTTTCACTGCTCGAAGCCTTAGAAAAATCTCAACAAAACCCTGTGGAAGTTCTCGATATCAAAACAGTGAAAAAACTCGTCCTTGCATTCGAACGCCGTCTTAAGGAGAACATTGCTGCACGTCTCAAGTACCCGGACCAACCAGAAAAGTTCGCGGATTCCGAAGTCGAGCTCCATGAAGAAATCGAAAAGCTCAAAATACTCGCCGGAGGCCCCGAATTTTACCCGGAACTCGTGAATCTCGGGACCATTGCGTCTATCACCAGCCTCCTCAATCACGAAAACACTGACATCGCTATTGACGTTGTCGGCTTATTACAAGACCTGACCGACGAGGATGTTCTCGAGGACAACGACGAGCCGGCGCAAATTTTAGTTGATTCATTGGTTGAGAACAATGCGTTAGAATTGCTCGTTCAGCTTCTAGGTAAAATGTCTGACTCCGATCCGGACGAGTCCGCTGCCATATATAGTATACTCGCGACTGTTGAGAATTTTATTGAAGTGAAACCCTCGGTGGCGGAACTTGTATGTGAAAGGACTAAGTTAATGAAGTGGTTGCTGACAAGAATAAAGGTAAGAGAATTTGATGGAAACAAGCAGTATGCATCGGAGATTTTGGCTATTTTGCTGCAGAGCAGCACGGCCAATCAGAAGAGATTAGGGCAATTGAACGGTGTGGACGCATTGTTACAAGCTGTAGCAATGTATAAATCGAAGGACCCTAAGACTCCAGATGAGGAAGAGATGGTTGAGAACTTGTTTGACGCCTTGTGTTGTTTGTTAATGCCTTTGGAGAATAAAGAGAAGTTTGTGAAATCTGAAGGTGTGGAATTGATGATCATTATTATGAATCAGAAGAAAATGTGCTATGGATCAGCTATAAGGGCGTTGGATTTTGCAATGACTAATTATCCTCCAGCATGTGAGAGGTTTGTGGATGTAATGGGGTTAAAGACTGCATTTCCTGCTTTTATGG : CTGCCTCTGAGCAAAAAGAACAAGAAACGCTACAAAGAAGAATTGGAAGAGCGTCTTGTATCACTTG</gDNA_template>
            <first_frame> *  F  V  C  E  K  L  F  C  C  Y  W  G  S  *  G  F  W  P  E  A  M  E  A  A  K  R  K  R  N  S  A  E  Y  E  E  D  E  Y  D  T  F  K  P  P  P  P  P  S  S  A  A  A  N  G  G  I  D  L  S  L  L  E  A  L  E  K  S  Q  Q  N  P  V  E  V  L  D  I  K  T  V  K  K  L  V  L  A  F  E  R  R  L  K  E  N  I  A  A  R  L  K  Y  P  D  Q  P  E  K  F  A  D  S  E  V  E  L  H  E  E  I  E  K  L  K  I  L  A  G  G  P  E  F  Y  P  E  L  V  N  L  G  T  I  A  S  I  T  S  L  L  N  H  E  N  T  D  I  A  I  D  V  V  G  L  L  Q  D  L  T  D  E  D  V  L  E  D  N  D  E  P  A  Q  I  L  V  D  S  L  V  E  N  N  A  L  E  L  L  V  Q  L  L  G  K  M  S  D  S  D  P  D  E  S  A  A  I  Y  S  I  L  A  T  V  E  N  F  I  E  V  K  P  S  V  A  E  L  V  C  E  R  T  K  L  M  K  W  L  L  T  R  I  K  V  R  E  F  D  G  N  K  Q  Y  A  S  E  I  L  A  I  L  L  Q  S  S  T  A  N  Q  K  R  L  G  Q  L  N  G  V  D  A  L  L  Q  A  V  A  M  Y  K  S  K  D  P  K  T  P  D  E  E  E  M  V  E  N  L  F  D  A  L  C  C  L  L  M  P  L  E  N  K  E  K  F  V  K  S  E  G  V  E  L  M  I  I  I  M  N  Q  K  K  M  C  Y  G  S  A  I  R  A  L  D  F  A  M  T  N  Y  P  P  A  C  E  R  F  V  D  V  M  G  L  K  T  A  F  P  A  F  M   : A  A  S  E  Q  K  E  Q  E  T  L  Q  R  R  I  G  R  A  S  C  I  T   </first_frame>
            <second_frame>  D  L  C  V  R  S  S  S  A  A  T  G  G  A  K  G  F  G  Q  K  L  W  K  Q  Q  N  A  S  E  T  L  P  S  T  K  K  M  S  T  T  H  S  N  H  R  R  R  R  P  Q  P  P  Q  T  E  G  S  T  F  H  C  S  K  P  *  K  N  L  N  K  T  L  W  K  F  S  I  S  K  Q  *  K  N  S  S  L  H  S  N  A  V  L  R  R  T  L  L  H  V  S  S  T  R  T  N  Q  K  S  S  R  I  P  K  S  S  S  M  K  K  S  K  S  S  K  Y  S  P  E  A  P  N  F  T  R  N  S  *  I  S  G  P  L  R  L  S  P  A  S  S  I  T  K  T  L  T  S  L  L  T  L  S  A  Y  Y  K  T  *  P  T  R  M  F  S  R  T  T  T  S  R  R  K  F  *  L  I  H  W  L  R  T  M  R  *  N  C  S  F  S  F  *  V  K  C  L  T  P  I  R  T  S  P  L  P  Y  I  V  Y  S  R  L  L  R  I  L  L  K  *  N  P  R  W  R  N  L  Y  V  K  G  L  S  *  *  S  G  C  *  Q  E  *  R  *  E  N  L  M  E  T  S  S  M  H  R  R  F  W  L  F  C  C  R  A  A  R  P  I  R  R  D  *  G  N  *  T  V  W  T  H  C  Y  K  L  *  Q  C  I  N  R  R  T  L  R  L  Q  M  R  K  R  W  L  R  T  C  L  T  P  C  V  V  C  *  C  L  W  R  I  K  R  S  L  *  N  L  K  V  W  N  *  *  S  L  L  *  I  R  R  K  C  A  M  D  Q  L  *  G  R  W  I  L  Q  *  L  I  I  L  Q  H  V  R  G  L  W  M  *  W  G  *  R  L  H  F  L  L  L  W  :  L  P  L  S  K  K  N  K  K  R  Y  K  E  E  L  E  E  R  L  V  S  L  </second_frame>
            <third_frame>   I  C  V  *  E  A  L  L  L  L  L  G  E  L  R  V  L  A  R  S  Y  G  S  S  K  T  Q  A  K  L  C  R  V  R  R  R  *  V  R  H  I  Q  T  T  A  A  A  V  L  S  R  R  K  R  R  D  R  P  F  T  A  R  S  L  R  K  I  S  T  K  P  C  G  S  S  R  Y  Q  N  S  E  K  T  R  P  C  I  R  T  P  S  *  G  E  H  C  C  T  S  Q  V  P  G  P  T  R  K  V  R  G  F  R  S  R  A  P  *  R  N  R  K  A  Q  N  T  R  R  R  P  R  I  L  P  G  T  R  E  S  R  D  H  C  V  Y  H  Q  P  P  Q  S  R  K  H  *  H  R  Y  *  R  C  R  L  I  T  R  P  D  R  R  G  C  S  R  G  Q  R  R  A  G  A  N  F  S  *  F  I  G  *  E  Q  C  V  R  I  A  R  S  A  S  R  *  N  V  *  L  R  S  G  R  V  R  C  H  I  *  Y  T  R  D  C  *  E  F  Y  *  S  E  T  L  G  G  G  T  C  M  *  K  D  *  V  N  E  V  V  A  D  K  N  K  G  K  R  I  *  W  K  Q  A  V  C  I  G  D  F  G  Y  F  A  A  E  Q  H  G  Q  S  E  E  I  R  A  I  E  R  C  G  R  I  V  T  S  C  S  N  V  *  I  E  G  P  *  D  S  R  *  G  R  D  G  *  E  L  V  *  R  L  V  L  F  V  N  A  F  G  E  *  R  E  V  C  E  I  *  R  C  G  I  D  D  H  Y  Y  E  S  E  E  N  V  L  W  I  S  Y  K  G  V  G  F  C  N  D  *  L  S  S  S  M  *  E  V  C  G  C  N  G  V  K  D  C  I  S  C  F  Y  G :   C  L  *  A  K  R  T  R  N  A  T  K  K  N  W  K  S  V  L  Y  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114815" stop="113708"/>
                    <exon start="112972" stop="112908"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFWPEAMEAAKRKRNSAEYEEDEYDTFKPPPPPSSAAANGGIDLSLLEALEKSQQNPVEVLDIKTVKKLVLAFERRLKENIAARLKYPDQPEKFADSEVELHEEIEKLKILAGGPEFYPELVNLGTIASITSLLNHENTDIAIDVVGLLQDLTDEDVLEDNDEPAQILVDSLVENNALELLVQLLGKMSDSDPDESAAIYSILATVENFIEVKPSVAELVCERTKLMKWLLTRIKVREFDGNKQYASEILAILLQSSTANQKRLGQLNGVDALLQAVAMYKSKDPKTPDEEEMVENLFDALCCLLMPLENKEKFVKSEGVELMIIIMNQKKMCYGSAIRALDFAMTNYPPACERFVDVMGLKTAFPAFMAASEQKEQETLQRRIGRASCIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="116545" PGL_stop="121059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116576" e_stop="116729"/>
            <exon e_start="116860" e_stop="116976"/>
            <exon e_start="117957" e_stop="118397"/>
            <exon e_start="119933" e_stop="120295"/>
            <exon e_start="120501" e_stop="121059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116576" e_stop="116729" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116860" e_stop="116976" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117957" e_stop="118397" e_length="441"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.994">
            <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119933" e_stop="120295" e_length="363"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="120296" i_stop="120500" i_length="205"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="120501" e_stop="121059" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116576" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116586" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116633" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116633" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116640" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116640" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116640" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116641" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116641" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116641" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116641" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116642" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116642" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116645" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116651" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116651" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="119951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116652" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116652" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116652" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116661" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116661" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116662" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116662" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116718" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116877" stop="116976"/>
              <exon start="117957" stop="118210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116877" stop="116976"/>
              <exon start="117957" stop="118080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116878" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118122" stop="118397"/>
              <exon start="119933" stop="120253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118122" stop="118397"/>
              <exon start="119933" stop="120111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118134" stop="118397"/>
              <exon start="119933" stop="120051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118148" stop="118397"/>
              <exon start="119933" stop="120295"/>
              <exon start="120501" stop="120540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118148" stop="118397"/>
              <exon start="119933" stop="120057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118246" stop="118397"/>
              <exon start="119933" stop="120295"/>
              <exon start="120501" stop="120753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118370" stop="118397"/>
              <exon start="119933" stop="120295"/>
              <exon start="120501" stop="120799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120020" stop="120295"/>
              <exon start="120501" stop="120736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120161" stop="120295"/>
              <exon start="120501" stop="120856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120161" stop="120295"/>
              <exon start="120501" stop="120856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120562" stop="121059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCGTCTTCTTCTCTTATAATATATATCAATTCCTTAATCTCTTCCACACACAGAGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG : GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG : ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG : GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAG : GGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTGATGTCCGCATAAATGTACTCCCTTGGGAATTCTAAATGTGACTTTTTTACCTATTTACTTAGAGGGCGTTTGGTAGGATGTATTAAAAGAAATAATCCATGTATTAGATGTGGTATAATTCAATGCTGTGTTTGGTAGGAATGTGAGCCTATGTATAACTAATCCATGGATTAGTTAATACATCCTACATGGTATTATGTGATGTATTGCTAATACCTTCCATTTGGAGGTATTAGCTCTAATACTATGGACTATTCTAG</gDNA_template>
            <first_frame> F  F  V  F  F  S  Y  N  I  Y  Q  F  L  N  L  F  H  T  Q  R  K  R  K  I  E  L  N  S  S  *  L  K  N  G  K  S  E  K  G  S  L  T  M  W  R  L  R  *  R  L  *   : G  D  G  T  I  S  S  S  T  S  L  W  T  S  R  *  C  C  L  S  W  K  E  I  R  *  H  L  P  H  C  R  P  S  A  L  W  S  P   : D  I  F  R  V  P  R  T  Q  F  C  C  *  C  N  L  R  *  N  R  G  Y  K  V  *  W  L  V  H  T  R  R  T  C  S  R  I  S  G  H  E  *  S  C  V  G  L  G  E  K  F  C  Q  H  *  K  A  N  C  L  C  L  S  W  T  T  D  P  G  G  C  R  C  G  Q  R  S  K  V  H  S  L  S  C  C  Q  A  G  A  C  C  G  W  C  P  L  G  R  A  R  N  P  G  L  M  Y  H  R  W  *  S  H  H  W  I  Y  L  R  R  K  P  *  F  H  S  T  L  C  *  G  T  R  W  Q  H  S  W  F  W  *  K  N  P  I  S  M  W   : G  F  H  G  R  L  *  S  Q  G  T  F  S  V  P  P  S  S  *  M  P  C  *  C  C  L  P  Q  E  E  S  R  R  E  M  P  H  G  C  A  R  L  *  R  *  P  D  L  *  *  E  A  R  S  R  F  Y  P  E  C  Q  F  *  K  C  G  C  F  K  L  *  W  T  C  N  S  R  R  P  S  S  R  I  P  C  P  G  *  *  C  Y  *  V  G  P  G  I  Y  G  V  Q  K  T  S  C  I  N  L  P  W  A  T  D  T  I  C  C  W  C  S  Q   : G  *  E  V  Y  C  V  P  C  C  E  T  *  R  D  T  R  R  G  D  M  A  R  T  R  T  N  R  P  L  L  H  G  R  T  S  C  D  G  G  S  L  A  R  S  S  *  V  Y  F  S  V  H  G  T  A  W  S  A  C  K  I  L  G  Y  L  F  V  *  H  V  L  P  G  D  E  N  K  F  F  L  I  V  T  E  *  *  V  C  F  Y  N  V  R  K  S  L  K  L  L  M  S  A  *  M  Y  S  L  G  N  S  K  C  D  F  F  T  Y  L  L  R  G  R  L  V  G  C  I  K  R  N  N  P  C  I  R  C  G  I  I  Q  C  C  V  W  *  E  C  E  P  M  Y  N  *  S  M  D  *  L  I  H  P  T  W  Y  Y  V  M  Y  C  *  Y  L  P  F  G  G  I  S  S  N  T  M  D  Y  S   </first_frame>
            <second_frame>  S  S  S  S  S  L  I  I  Y  I  N  S  L  I  S  S  T  H  R  E  R  E  R  *  S  S  I  P  A  D  *  K  M  A  N  Q  K  R  V  L  L  L  C  G  D  Y  V  E  D  Y  E  :  V  M  V  P  F  Q  A  L  L  A  Y  G  L  A  V  D  A  V  C  P  G  K  K  S  G  D  I  C  R  T  A  V  H  Q  L  Y  G  H  Q  :  T  Y  S  E  S  R  G  H  N  F  A  V  N  A  T  F  D  E  I  E  A  T  K  Y  D  G  L  F  I  P  G  G  R  A  P  E  Y  L  A  M  N  E  A  V  L  D  L  V  K  S  F  A  N  T  K  K  P  I  V  S  V  C  H  G  Q  L  I  L  A  A  A  D  V  V  R  G  R  K  C  T  A  Y  P  A  V  K  P  V  L  V  A  A  G  A  H  W  E  E  P  E  T  L  A  S  C  T  I  D  G  N  L  I  T  G  S  T  Y  E  G  N  P  D  F  I  R  L  F  V  K  A  L  G  G  S  I  V  G  S  G  K  R  I  L  F  L  C  G  :  D  F  M  E  D  Y  E  V  K  V  P  F  Q  S  L  Q  A  L  E  C  H  V  D  A  V  C  P  K  K  K  A  G  E  K  C  P  T  A  V  H  D  F  E  G  D  Q  T  Y  S  E  K  P  G  H  D  F  T  L  N  A  N  F  E  S  V  D  V  S  S  Y  D  G  L  V  I  P  G  G  R  A  P  E  Y  L  A  L  D  D  D  V  I  K  L  V  Q  E  F  M  E  S  K  K  P  V  A  S  I  C  H  G  Q  Q  I  L  S  A  A  G  V  L  K  :  G  K  K  C  T  A  Y  P  A  V  K  L  N  V  I  L  G  G  A  T  W  L  E  P  E  P  I  D  R  C  F  T  D  G  H  L  V  T  G  A  A  W  P  G  H  P  E  F  I  S  Q  F  M  A  L  L  G  V  H  V  K  F  *  A  T  C  L  F  D  M  F  C  Q  V  M  R  I  N  F  F  *  L  *  Q  N  N  E  C  V  F  I  M  F  E  N  H  *  N  Y  *  C  P  H  K  C  T  P  L  G  I  L  N  V  T  F  L  P  I  Y  L  E  G  V  W  *  D  V  L  K  E  I  I  H  V  L  D  V  V  *  F  N  A  V  F  G  R  N  V  S  L  C  I  T  N  P  W  I  S  *  Y  I  L  H  G  I  M  *  C  I  A  N  T  F  H  L  E  V  L  A  L  I  L  W  T  I  L  </second_frame>
            <third_frame>   L  R  L  L  L  L  *  Y  I  S  I  P  *  S  L  P  H  T  E  K  E  K  D  R  A  Q  F  Q  L  I  E  K  W  Q  I  R  K  G  F  S  Y  Y  V  E  I  T  L  K  T  M  R :   *  W  Y  H  F  K  L  Y  *  P  M  D  *  P  L  M  L  F  V  L  E  R  N  P  V  T  F  A  A  L  P  S  I  S  F  M  V  T  R :   H  I  Q  S  P  A  D  T  I  L  L  L  M  Q  P  S  M  K  S  R  L  Q  S  M  M  A  C  S  Y  Q  E  D  V  L  Q  N  I  W  P  *  M  K  L  C  W  T  W  *  K  V  L  P  T  L  K  S  Q  L  S  L  S  V  M  D  N  *  S  W  R  L  Q  M  W  S  E  V  E  S  A  Q  L  I  L  L  S  S  R  C  L  L  R  L  V  P  I  G  K  S  Q  K  P  W  P  H  V  P  S  M  V  I  S  S  L  D  L  L  T  K  E  T  L  I  S  F  D  S  L  L  R  H  S  V  A  A  *  L  V  L  V  K  E  S  Y  F  Y  V  G :   I  S  W  K  T  M  K  S  R  Y  L  F  S  P  S  K  L  L  N  A  M  L  M  L  F  A  P  R  R  K  P  E  R  N  A  P  R  L  C  T  T  L  K  V  T  R  L  I  V  R  S  Q  V  T  I  L  P  *  M  P  I  L  K  V  W  M  F  Q  A  M  M  D  L  *  F  P  E  A  E  L  Q  N  T  L  P  W  M  M  M  L  L  S  W  S  R  N  L  W  S  P  K  N  Q  L  H  Q  S  A  M  G  N  R  Y  Y  L  L  L  V  F  S  R :   V  R  S  V  L  R  T  L  L  *  N  L  T  *  Y  *  E  G  R  H  G  *  N  Q  N  Q  *  T  V  A  S  R  T  D  I  L  *  R  G  Q  L  G  Q  V  I  L  S  L  F  L  S  S  W  H  C  L  E  C  M  *  N  F  R  L  L  V  C  L  T  C  F  A  R  *  *  E  *  I  F  F  N  C  N  R  I  M  S  V  F  L  *  C  S  K  I  T  K  T  T  D  V  R  I  N  V  L  P  W  E  F  *  M  *  L  F  Y  L  F  T  *  R  A  F  G  R  M  Y  *  K  K  *  S  M  Y  *  M  W  Y  N  S  M  L  C  L  V  G  M  *  A  Y  V  *  L  I  H  G  L  V  N  T  S  Y  M  V  L  C  D  V  L  L  I  P  S  I  W  R  Y  *  L  *  Y  Y  G  L  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116670" stop="116729"/>
                    <exon start="116860" stop="116976"/>
                    <exon start="117957" stop="118397"/>
                    <exon start="119933" stop="120295"/>
                    <exon start="120501" stop="120689"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMANQKRVLLLCGDYVEDYEVMVPFQALLAYGLAVDAVCPGKKSGDICRTAVHQLYGHQTYSESRGHNFAVNATFDEIEATKYDGLFIPGGRAPEYLAMNEAVLDLVKSFANTKKPIVSVCHGQLILAAADVVRGRKCTAYPAVKPVLVAAGAHWEEPETLASCTIDGNLITGSTYEGNPDFIRLFVKALGGSIVGSGKRILFLCGDFMEDYEVKVPFQSLQALECHVDAVCPKKKAGEKCPTAVHDFEGDQTYSEKPGHDFTLNANFESVDVSSYDGLVIPGGRAPEYLALDDDVIKLVQEFMESKKPVASICHGQQILSAAGVLKGKKCTAYPAVKLNVILGGATWLEPEPIDRCFTDGHLVTGAAWPGHPEFISQFMALLGVHVKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116545" e_stop="116549"/>
            <exon e_start="116633" e_stop="116729"/>
            <exon e_start="116860" e_stop="116976"/>
            <exon e_start="117957" e_stop="118397"/>
            <exon e_start="119933" e_stop="120295"/>
            <exon e_start="120501" e_stop="121059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.783" e_score="0.800"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="116545" e_stop="116549" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.783">
            <gDNA_intron_boundary i_start="116550" i_stop="116632" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116633" e_stop="116729" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116730" i_stop="116859" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116860" e_stop="116976" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="116977" i_stop="117956" i_length="980"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117957" e_stop="118397" e_length="441"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.994">
            <gDNA_intron_boundary i_start="118398" i_stop="119932" i_length="1535"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119933" e_stop="120295" e_length="363"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="120296" i_stop="120500" i_length="205"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="120501" e_stop="121059" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116545" stop="116549"/>
              <exon start="116633" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116633" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116633" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116640" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116640" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116640" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116641" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116641" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116641" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116641" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116642" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116642" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116645" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116651" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116651" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="119951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116652" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116652" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116652" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116661" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116661" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116662" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116662" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116718" stop="116729"/>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116860" stop="116976"/>
              <exon start="117957" stop="118371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116877" stop="116976"/>
              <exon start="117957" stop="118210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116877" stop="116976"/>
              <exon start="117957" stop="118080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116878" stop="116976"/>
              <exon start="117957" stop="118397"/>
              <exon start="119933" stop="120011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118122" stop="118397"/>
              <exon start="119933" stop="120253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118122" stop="118397"/>
              <exon start="119933" stop="120111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118134" stop="118397"/>
              <exon start="119933" stop="120051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118148" stop="118397"/>
              <exon start="119933" stop="120295"/>
              <exon start="120501" stop="120540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118148" stop="118397"/>
              <exon start="119933" stop="120057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118246" stop="118397"/>
              <exon start="119933" stop="120295"/>
              <exon start="120501" stop="120753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118370" stop="118397"/>
              <exon start="119933" stop="120295"/>
              <exon start="120501" stop="120799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120020" stop="120295"/>
              <exon start="120501" stop="120736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120161" stop="120295"/>
              <exon start="120501" stop="120856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120161" stop="120295"/>
              <exon start="120501" stop="120856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120562" stop="121059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAG : AGAAAGAGAAAGATAGAGCTCAATTCCAGCTGATTGAAAAATGGCAAATCAGAAAAGGGTTCTCTTACTATGTGGAGATTACGTTGAAGACTATGAG : GTGATGGTACCATTTCAAGCTCTACTAGCCTATGGACTAGCCGTTGATGCTGTTTGTCCTGGAAAGAAATCCGGTGACATTTGCCGCACTGCCGTCCATCAGCTTTATGGTCACCAG : ACATATTCAGAGTCCCGCGGACACAATTTTGCTGTTAATGCAACCTTCGATGAAATCGAGGCTACAAAGTATGATGGCTTGTTCATACCAGGAGGACGTGCTCCAGAATATCTGGCCATGAATGAAGCTGTGTTGGACTTGGTGAAAAGTTTTGCCAACACTAAAAAGCCAATTGTCTCTGTCTGTCATGGACAACTGATCCTGGCGGCTGCAGATGTGGTCAGAGGTCGAAAGTGCACAGCTTATCCTGCTGTCAAGCCGGTGCTTGTTGCGGCTGGTGCCCATTGGGAAGAGCCAGAAACCCTGGCCTCATGTACCATCGATGGTAATCTCATCACTGGATCTACTTACGAAGGAAACCCTGATTTCATTCGACTCTTTGTTAAGGCACTCGGTGGCAGCATAGTTGGTTCTGGTAAAAGAATCCTATTTCTATGTGGG : GATTTCATGGAAGACTATGAAGTCAAGGTACCTTTTCAGTCCCTCCAAGCTCTTGAATGCCATGTTGATGCTGTTTGCCCCAAGAAGAAAGCCGGAGAGAAATGCCCCACGGCTGTGCACGACTTTGAAGGTGACCAGACTTATAGTGAGAAGCCAGGTCACGATTTTACCCTGAATGCCAATTTTGAAAGTGTGGATGTTTCAAGCTATGATGGACTTGTAATTCCCGGAGGCCGAGCTCCAGAATACCTTGCCCTGGATGATGATGTTATTAAGTTGGTCCAGGAATTTATGGAGTCCAAAAAACCAGTTGCATCAATCTGCCATGGGCAACAGATACTATCTGCTGCTGGTGTTCTCAAG : GGTAAGAAGTGTACTGCGTACCCTGCTGTGAAACTTAACGTGATACTAGGAGGGGCGACATGGCTAGAACCAGAACCAATAGACCGTTGCTTCACGGACGGACATCTTGTGACGGGGGCAGCTTGGCCAGGTCATCCTGAGTTTATTTCTCAGTTCATGGCACTGCTTGGAGTGCATGTAAAATTTTAGGCTACTTGTTTGTTTGACATGTTTTGCCAGGTGATGAGAATAAATTTTTTTTAATTGTAACAGAATAATGAGTGTGTTTTTATAATGTTCGAAAATCACTAAAACTACTGATGTCCGCATAAATGTACTCCCTTGGGAATTCTAAATGTGACTTTTTTACCTATTTACTTAGAGGGCGTTTGGTAGGATGTATTAAAAGAAATAATCCATGTATTAGATGTGGTATAATTCAATGCTGTGTTTGGTAGGAATGTGAGCCTATGTATAACTAATCCATGGATTAGTTAATACATCCTACATGGTATTATGTGATGTATTGCTAATACCTTCCATTTGGAGGTATTAGCTCTAATACTATGGACTATTCTAG</gDNA_template>
            <first_frame> D  R :   E  R  E  R  *  S  S  I  P  A  D  *  K  M  A  N  Q  K  R  V  L  L  L  C  G  D  Y  V  E  D  Y  E  :  V  M  V  P  F  Q  A  L  L  A  Y  G  L  A  V  D  A  V  C  P  G  K  K  S  G  D  I  C  R  T  A  V  H  Q  L  Y  G  H  Q  :  T  Y  S  E  S  R  G  H  N  F  A  V  N  A  T  F  D  E  I  E  A  T  K  Y  D  G  L  F  I  P  G  G  R  A  P  E  Y  L  A  M  N  E  A  V  L  D  L  V  K  S  F  A  N  T  K  K  P  I  V  S  V  C  H  G  Q  L  I  L  A  A  A  D  V  V  R  G  R  K  C  T  A  Y  P  A  V  K  P  V  L  V  A  A  G  A  H  W  E  E  P  E  T  L  A  S  C  T  I  D  G  N  L  I  T  G  S  T  Y  E  G  N  P  D  F  I  R  L  F  V  K  A  L  G  G  S  I  V  G  S  G  K  R  I  L  F  L  C  G  :  D  F  M  E  D  Y  E  V  K  V  P  F  Q  S  L  Q  A  L  E  C  H  V  D  A  V  C  P  K  K  K  A  G  E  K  C  P  T  A  V  H  D  F  E  G  D  Q  T  Y  S  E  K  P  G  H  D  F  T  L  N  A  N  F  E  S  V  D  V  S  S  Y  D  G  L  V  I  P  G  G  R  A  P  E  Y  L  A  L  D  D  D  V  I  K  L  V  Q  E  F  M  E  S  K  K  P  V  A  S  I  C  H  G  Q  Q  I  L  S  A  A  G  V  L  K  :  G  K  K  C  T  A  Y  P  A  V  K  L  N  V  I  L  G  G  A  T  W  L  E  P  E  P  I  D  R  C  F  T  D  G  H  L  V  T  G  A  A  W  P  G  H  P  E  F  I  S  Q  F  M  A  L  L  G  V  H  V  K  F  *  A  T  C  L  F  D  M  F  C  Q  V  M  R  I  N  F  F  *  L  *  Q  N  N  E  C  V  F  I  M  F  E  N  H  *  N  Y  *  C  P  H  K  C  T  P  L  G  I  L  N  V  T  F  L  P  I  Y  L  E  G  V  W  *  D  V  L  K  E  I  I  H  V  L  D  V  V  *  F  N  A  V  F  G  R  N  V  S  L  C  I  T  N  P  W  I  S  *  Y  I  L  H  G  I  M  *  C  I  A  N  T  F  H  L  E  V  L  A  L  I  L  W  T  I  L  </first_frame>
            <second_frame>  T   : E  K  E  K  D  R  A  Q  F  Q  L  I  E  K  W  Q  I  R  K  G  F  S  Y  Y  V  E  I  T  L  K  T  M  R :   *  W  Y  H  F  K  L  Y  *  P  M  D  *  P  L  M  L  F  V  L  E  R  N  P  V  T  F  A  A  L  P  S  I  S  F  M  V  T  R :   H  I  Q  S  P  A  D  T  I  L  L  L  M  Q  P  S  M  K  S  R  L  Q  S  M  M  A  C  S  Y  Q  E  D  V  L  Q  N  I  W  P  *  M  K  L  C  W  T  W  *  K  V  L  P  T  L  K  S  Q  L  S  L  S  V  M  D  N  *  S  W  R  L  Q  M  W  S  E  V  E  S  A  Q  L  I  L  L  S  S  R  C  L  L  R  L  V  P  I  G  K  S  Q  K  P  W  P  H  V  P  S  M  V  I  S  S  L  D  L  L  T  K  E  T  L  I  S  F  D  S  L  L  R  H  S  V  A  A  *  L  V  L  V  K  E  S  Y  F  Y  V  G :   I  S  W  K  T  M  K  S  R  Y  L  F  S  P  S  K  L  L  N  A  M  L  M  L  F  A  P  R  R  K  P  E  R  N  A  P  R  L  C  T  T  L  K  V  T  R  L  I  V  R  S  Q  V  T  I  L  P  *  M  P  I  L  K  V  W  M  F  Q  A  M  M  D  L  *  F  P  E  A  E  L  Q  N  T  L  P  W  M  M  M  L  L  S  W  S  R  N  L  W  S  P  K  N  Q  L  H  Q  S  A  M  G  N  R  Y  Y  L  L  L  V  F  S  R :   V  R  S  V  L  R  T  L  L  *  N  L  T  *  Y  *  E  G  R  H  G  *  N  Q  N  Q  *  T  V  A  S  R  T  D  I  L  *  R  G  Q  L  G  Q  V  I  L  S  L  F  L  S  S  W  H  C  L  E  C  M  *  N  F  R  L  L  V  C  L  T  C  F  A  R  *  *  E  *  I  F  F  N  C  N  R  I  M  S  V  F  L  *  C  S  K  I  T  K  T  T  D  V  R  I  N  V  L  P  W  E  F  *  M  *  L  F  Y  L  F  T  *  R  A  F  G  R  M  Y  *  K  K  *  S  M  Y  *  M  W  Y  N  S  M  L  C  L  V  G  M  *  A  Y  V  *  L  I  H  G  L  V  N  T  S  Y  M  V  L  C  D  V  L  L  I  P  S  I  W  R  Y  *  L  *  Y  Y  G  L  F  * </second_frame>
            <third_frame>   Q  :  R  K  R  K  I  E  L  N  S  S  *  L  K  N  G  K  S  E  K  G  S  L  T  M  W  R  L  R  *  R  L  *   : G  D  G  T  I  S  S  S  T  S  L  W  T  S  R  *  C  C  L  S  W  K  E  I  R  *  H  L  P  H  C  R  P  S  A  L  W  S  P   : D  I  F  R  V  P  R  T  Q  F  C  C  *  C  N  L  R  *  N  R  G  Y  K  V  *  W  L  V  H  T  R  R  T  C  S  R  I  S  G  H  E  *  S  C  V  G  L  G  E  K  F  C  Q  H  *  K  A  N  C  L  C  L  S  W  T  T  D  P  G  G  C  R  C  G  Q  R  S  K  V  H  S  L  S  C  C  Q  A  G  A  C  C  G  W  C  P  L  G  R  A  R  N  P  G  L  M  Y  H  R  W  *  S  H  H  W  I  Y  L  R  R  K  P  *  F  H  S  T  L  C  *  G  T  R  W  Q  H  S  W  F  W  *  K  N  P  I  S  M  W   : G  F  H  G  R  L  *  S  Q  G  T  F  S  V  P  P  S  S  *  M  P  C  *  C  C  L  P  Q  E  E  S  R  R  E  M  P  H  G  C  A  R  L  *  R  *  P  D  L  *  *  E  A  R  S  R  F  Y  P  E  C  Q  F  *  K  C  G  C  F  K  L  *  W  T  C  N  S  R  R  P  S  S  R  I  P  C  P  G  *  *  C  Y  *  V  G  P  G  I  Y  G  V  Q  K  T  S  C  I  N  L  P  W  A  T  D  T  I  C  C  W  C  S  Q   : G  *  E  V  Y  C  V  P  C  C  E  T  *  R  D  T  R  R  G  D  M  A  R  T  R  T  N  R  P  L  L  H  G  R  T  S  C  D  G  G  S  L  A  R  S  S  *  V  Y  F  S  V  H  G  T  A  W  S  A  C  K  I  L  G  Y  L  F  V  *  H  V  L  P  G  D  E  N  K  F  F  L  I  V  T  E  *  *  V  C  F  Y  N  V  R  K  S  L  K  L  L  M  S  A  *  M  Y  S  L  G  N  S  K  C  D  F  F  T  Y  L  L  R  G  R  L  V  G  C  I  K  R  N  N  P  C  I  R  C  G  I  I  Q  C  C  V  W  *  E  C  E  P  M  Y  N  *  S  M  D  *  L  I  H  P  T  W  Y  Y  V  M  Y  C  *  Y  L  P  F  G  G  I  S  S  N  T  M  D  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116670" stop="116729"/>
                    <exon start="116860" stop="116976"/>
                    <exon start="117957" stop="118397"/>
                    <exon start="119933" stop="120295"/>
                    <exon start="120501" stop="120689"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMANQKRVLLLCGDYVEDYEVMVPFQALLAYGLAVDAVCPGKKSGDICRTAVHQLYGHQTYSESRGHNFAVNATFDEIEATKYDGLFIPGGRAPEYLAMNEAVLDLVKSFANTKKPIVSVCHGQLILAAADVVRGRKCTAYPAVKPVLVAAGAHWEEPETLASCTIDGNLITGSTYEGNPDFIRLFVKALGGSIVGSGKRILFLCGDFMEDYEVKVPFQSLQALECHVDAVCPKKKAGEKCPTAVHDFEGDQTYSEKPGHDFTLNANFESVDVSSYDGLVIPGGRAPEYLALDDDVIKLVQEFMESKKPVASICHGQQILSAAGVLKGKKCTAYPAVKLNVILGGATWLEPEPIDRCFTDGHLVTGAAWPGHPEFISQFMALLGVHVKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="126434" PGL_stop="131601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126434" e_stop="126886"/>
            <exon e_start="127990" e_stop="128105"/>
            <exon e_start="128195" e_stop="128283"/>
            <exon e_start="128389" e_stop="128502"/>
            <exon e_start="128902" e_stop="128989"/>
            <exon e_start="129081" e_stop="129166"/>
            <exon e_start="129265" e_stop="129367"/>
            <exon e_start="129652" e_stop="129749"/>
            <exon e_start="130062" e_stop="130491"/>
            <exon e_start="131002" e_stop="131601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126434" e_stop="126886" e_length="453"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127990" e_stop="128105" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128195" e_stop="128283" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.995">
            <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128389" e_stop="128502" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.965">
            <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128902" e_stop="128989" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.842" acc_prob="0.995">
            <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="129081" e_stop="129166" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.827" acc_prob="0.999">
            <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="129265" e_stop="129367" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="129652" e_stop="129749" e_length="98"/>
          </exon>
          <intron i_serial="8" don_prob="0.860" acc_prob="0.997">
            <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="130062" e_stop="130491" e_length="430"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="131002" e_stop="131601" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126434" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126442" stop="126886"/>
              <exon start="127990" stop="128103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126446" stop="126886"/>
              <exon start="127990" stop="128096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126449" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126453" stop="126886"/>
              <exon start="127990" stop="128021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126461" stop="126886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126464" stop="126732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126469" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126471" stop="126886"/>
              <exon start="127990" stop="128027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126472" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126513" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126540" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126540" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126563" stop="126886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126586" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126620" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126620" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126685" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126708" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126828" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126850" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128060" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128100" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128100" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128230" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128230" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128239" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128429" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128485" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128953" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128953" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129090" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130491"/>
              <exon start="131002" stop="131098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129161" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130491"/>
              <exon start="131002" stop="131065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129305" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130491"/>
              <exon start="131002" stop="131268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129711" stop="129749"/>
              <exon start="130062" stop="130491"/>
              <exon start="131002" stop="131243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130062" stop="130424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130226" stop="130491"/>
              <exon start="131002" stop="131250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130263" stop="130491"/>
              <exon start="131002" stop="131467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130321" stop="130491"/>
              <exon start="131002" stop="131157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130394" stop="130491"/>
              <exon start="131002" stop="131601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130394" stop="130491"/>
              <exon start="131002" stop="131600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130429" stop="130491"/>
              <exon start="131002" stop="131467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131257" stop="131461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTCCAGACTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG : GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG : GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG : GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG : TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG : ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG : GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG : GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG : GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT : GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTAATTGACCATGTCTGAGAGTTTTATTATTTCTTCTGTCGGAACAATTAGTTGTTTATTATGTTTTCATTATCCTTGAATAGGAAATTTGTATTGGAAAGCATTGCACAAGCATTTCCCTTTGAATGAATCACATT</gDNA_template>
            <first_frame> I  F  S  R  L  F  L  I  E  R  E  R  E  I  I  H  Y  *  D  L  E  R  D  V  L  R  F  R  D  *  F  L  V  D  L  C  K  R  S  K  N  L  R  S  I  V  E  D  L  L  R  *  Y  L  I  Q  V  M  I  M  S  W  L  D  K  L  R  S  S  S  N  L  S  R  F  I  A  G  L  L  I  F  M  L  Y  H  S  S  Q  L  I  S  N  F  L  I  P  I  Q  P  *  F  T  S  Q  S  P  P  F  S  V  F  F  L  C  S  K  T  F  T  L  L  S  R  F  K  Q  R  R  R  F  C  S  R  I  S  W  K  S  K  M  M  I  L  V  P  A  I  Y  L  T  :  A  F  Y  H  P  A  *  V  G  C  I  V  Q  L  R  L  *  L  *  L  V  E  V  S  Q  G  *  L  L  R  V  S  F  T  M  H  L  L  R :   F  S  Y  W  S  H  G  I  D  W  V  V  A  Y  I  P  T  T  H  L  V  A  Q  L  I  W  E  H  H   : G  S  T  G  C  V  M  R  I  R  W  L  H  *  Y  V  D  *  G  S  P  Y  I  A  L  V  V  T  T  Q  C  C  M  T  M  T  *  K   : V  T  C  C  L  T  W  M  V  I  K  F  L  K  T  Q  L  F  K  L  E  K  F  S  R  K  S  S  A  R :   L  R  K  *  G  M  S  I  V  M  T  C  Q  F  F  K  Q  Y  L  L  Y  W  T  G  I  Q  N  *   : G  K  K  D  F  P  M  R  C  C  N  G  T  Y  A  E  W  R  H  G  S  L  R  M  Q  T  R  S  L  *  K  P  G  I  R :   N  K  F  S  L  V  V  M  V  L  W  C  K  V  T  T  Q  S  *  R  P  Y  Q  K  T  L  I  S  V  *  I  T   : G  S  R  G  L  Q  M  G  I  T  R  *  W  L  Q  L  R  M  G  E  I  L  L  Q  M  L  L  L  *  L  C  L  *  V  F  *  K  P  T  *  L  S  L  S  Q  N  C  Q  N  G  N  N  L  Q  *  Q  I  L  V  *  A  M  K  T  R  L  H  Y  D  L  I  M  Y  F  G  Q  T  *  N  C  *  V  L  L  H  P  L  H  M  L  A  V  I  F  L  I  S  T  R  Q  Q  D  I  G  S  L  F  T  W  L  L  E  D  L  L  V  T  S  R  N  *  Q  M  N  L  L  L  S  L  Q  C  C  S  *  R  R  C  S  L  M  P  L  S  L :   F  S  I  L  Y  L  T  G  V  R  I  Q  T  P  L  D  V  I  L  M  T  W  L  E  N  Q  R  M  L  T  I  G  F  G  H  Q  L  V  I  Y  S  L  E  G  K  L  *  A  V  M  I  I  K  G  R  F  M  V  R  M  K  L  E  L  W  L  V  K  R  A  A  D  I  S  S  K  D  M  E  V  W  K  W  F  R  L  F  P  L  G  R  R  P  L  K  Q  Q  F  L  S  K  S  Q  E  C  D  I  S  S  L  N  L  Q  V  T  F  Q  V  T  Y  V  V  C  S  S  L  Y  Y  Y  L  V  *  I  N  *  R  L  C  L  R  A  T  E  I  F  K  L  Y  I  Y  M  S  D  F  L  I  D  H  V  *  E  F  Y  Y  F  F  C  R  N  N  *  L  F  I  M  F  S  L  S  L  N  R  K  F  V  L  E  S  I  A  Q  A  F  P  F  E  *  I  T   </first_frame>
            <second_frame>  F  F  P  D  S  S  L  *  R  E  K  E  R  L  F  T  I  E  I  *  R  E  T  Y  Y  D  S  E  I  N  F  W  S  I  Y  A  N  E  A  K  I  F  D  Q  L  W  R  I  C  C  V  D  I  *  S  R  L  *  L  *  A  G  L  I  S  Y  G  L  L  L  I  S  A  A  S  L  P  A  F  L  S  S  C  F  I  I  H  L  N  *  F  L  I  S  *  F  L  Y  N  R  N  L  L  H  N  H  L  P  S  L  F  F  S  S  V  Q  K  H  S  L  F  S  P  D  L  N  N  V  G  V  F  V  H  G  F  H  G  N  Q  R  *  *  F  W  F  Q  Q  F  I  *  R :   H  F  T  T  P  L  R  *  A  A  *  F  S  S  V  C  N  C  N  W  W  R  Y  L  R  D  S  C  C  A  F  P  S  Q  C  I  F  *   : G  S  L  I  G  V  T  G  *  T  G  W  S  H  T  Y  R  L  L  I  W  L  P  S  *  Y  G  S  I  M  :  A  P  R  G  V  *  *  E  S  V  G  S  I  D  T  S  I  R  A  H  P  I  S  H  *  W  *  Q  L  S  A  V  *  P  *  L  R  K  :  L  H  A  V  *  H  G  W  S  S  S  S  S  K  H  S  C  S  S  W  R  S  F  Q  E  N  P  Q  R   : D  *  E  S  E  E  *  A  *  S  *  L  V  S  S  S  S  N  I  Y  C  T  G  Q  A  S  R  I  E  :  A  R  R  T  F  P  *  G  V  A  M  V  H  M  Q  N  G  G  M  V  R  C  G  C  R  H  D  L  S  E  N  L  G  S   : G  T  S  S  H  W  W  S  W  S  Y  G  A  R  L  Q  P  S  H  K  G  L  I  K  R  H  *  Y  P  F  K  S  Q  :  G  Q  E  D  Y  K  W  V  *  Q  G  D  G  Y  S  *  G  W  E  K  F  Y  C  R  C  C  Y  Y  N  C  A  S  R  C  S  E  S  Q  L  D  *  V  *  A  K  T  A  R  M  E  T  I  C  N  S  R  S  W  C  R  Q  *  K  Q  D  C  I  T  I  *  *  C  I  L  A  K  R  R  I  V  R  C  C  C  T  H  F  I  C  L  R  L  F  S  *  S  P  Q  G  N  R  T  S  G  P  C  L  H  G  C  W  K  T  C  L  *  P  R  E  I  N  R  *  I  C  C  *  V  C  N  V  A  V  E  E  D  V  P  *  C  H  *  A   : C  S  V  S  C  I  S  L  G  Y  G  S  R  H  P  W  M  L  F  L  *  L  G  W  K  T  N  G  C  L  R  *  A  S  G  T  N  W  *  S  I  L  W  R  G  S  C  E  Q  *  *  S  S  R  V  G  S  W  C  V  *  S  W  N  Y  G  W  *  N  V  P  P  T  S  H  Q  K  T  W  K  S  G  N  G  S  G  C  F  L  *  G  G  D  P  *  S  S  S  S  S  P  N  L  K  N  V  I  Y  L  L  *  I  C  K  L  H  F  K  *  L  M  *  F  V  P  V  C  T  I  T  L  Y  E  *  I  N  D  Y  V  S  V  Q  L  K  Y  S  N  Y  I  Y  I  C  Q  T  F  *  L  T  M  S  E  S  F  I  I  S  S  V  G  T  I  S  C  L  L  C  F  H  Y  P  *  I  G  N  L  Y  W  K  A  L  H  K  H  F  P  L  N  E  S  H  </second_frame>
            <third_frame>   F  F  Q  T  L  P  Y  R  E  R  K  R  D  Y  S  L  L  R  S  R  E  R  R  T  T  I  Q  R  L  I  S  G  R  S  M  Q  T  K  Q  K  S  S  I  N  C  G  G  F  V  A  L  I  F  D  P  G  Y  D  Y  E  L  A  *  *  A  T  V  F  F  *  S  Q  P  L  H  C  R  P  S  Y  L  H  A  L  S  F  I  S  I  N  F  *  F  L  D  S  Y  T  T  V  I  Y  F  T  I  T  S  L  L  C  F  F  P  L  F  K  N  I  H  S  S  L  P  I  *  T  T  S  A  F  L  F  T  D  F  M  E  I  K  D  D  D  S  G  S  S  N  L  F  D   : G  I  L  P  P  R  L  G  R  L  H  S  S  A  P  S  V  I  V  I  G  G  G  I  S  G  I  A  A  A  R  F  L  H  N  A  S  F  K  :  V  L  L  L  E  S  R  D  R  L  G  G  R  I  H  T  D  Y  S  F  G  C  P  V  D  M  G  A  S  W :   L  H  G  V  C  D  E  N  P  L  A  P  L  I  R  R  L  G  L  T  L  Y  R  T  S  G  D  N  S  V  L  Y  D  H  D  L  E  S :   Y  M  L  F  D  M  D  G  H  Q  V  P  Q  N  T  V  V  Q  V  G  E  V  F  K  K  I  L  S  E  :  T  E  K  V  R  N  E  H  S  H  D  L  S  V  L  Q  A  I  S  I  V  L  D  R  H  P  E  L  R :   Q  E  G  L  S  H  E  V  L  Q  W  Y  I  C  R  M  E  A  W  F  A  A  D  A  D  T  I  S  L  K  T  W  D  Q  :  E  Q  V  L  T  G  G  H  G  L  M  V  Q  G  Y  N  P  V  I  K  A  L  S  K  D  I  D  I  R  L  N  H  R :   V  K  R  I  T  N  G  Y  N  K  V  M  V  T  V  K  D  G  R  N  F  I  A  D  A  A  I  I  T  V  P  L  G  V  L  K  A  N  L  I  E  F  E  P  K  L  P  E  W  K  Q  S  A  I  A  D  L  G  V  G  N  E  N  K  I  A  L  R  F  D  N  V  F  W  P  N  V  E  L  L  G  V  V  A  P  T  S  Y  A  C  G  Y  F  L  N  L  H  K  A  T  G  H  R  V  L  V  Y  M  A  A  G  R  L  A  C  D  L  E  K  L  T  D  E  S  A  A  E  F  A  M  L  Q  L  K  K  M  F  P  D  A  T  K  P  :  V  Q  Y  L  V  S  H  W  G  T  D  P  D  T  L  G  C  Y  S  Y  D  L  V  G  K  P  T  D  A  Y  D  R  L  R  A  P  I  G  N  L  F  F  G  G  E  A  V  S  S  D  D  H  Q  G  S  V  H  G  A  Y  E  A  G  I  M  A  G  E  T  C  R  R  H  L  I  K  R  H  G  S  L  E  M  V  Q  A  V  S  S  R  E  E  T  L  E  A  A  V  P  L  Q  I  S  R  M  *  Y  I  F  S  E  F  A  S  Y  I  S  S  N  L  C  S  L  F  Q  F  V  L  L  P  C  M  N  K  L  T  I  M  S  P  C  N  *  N  I  Q  T  I  Y  I  Y  V  R  L  F  N  *  P  C  L  R  V  L  L  F  L  L  S  E  Q  L  V  V  Y  Y  V  F  I  I  L  E  *  E  I  C  I  G  K  H  C  T  S  I  S  L  *  M  N  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126811" stop="126886"/>
                    <exon start="127990" stop="128105"/>
                    <exon start="128195" stop="128283"/>
                    <exon start="128389" stop="128502"/>
                    <exon start="128902" stop="128989"/>
                    <exon start="129081" stop="129166"/>
                    <exon start="129265" stop="129367"/>
                    <exon start="129652" stop="129749"/>
                    <exon start="130062" stop="130491"/>
                    <exon start="131002" stop="131319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1515</number_coding_nucleotides>
                  <number_encoded_amino_acids>505</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTSAFLFTDFMEIKDDDSGSSNLFDGILPPRLGRLHSSAPSVIVIGGGISGIAAARFLHNASFKVLLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCDENPLAPLIRRLGLTLYRTSGDNSVLYDHDLESYMLFDMDGHQVPQNTVVQVGEVFKKILSETEKVRNEHSHDLSVLQAISIVLDRHPELRQEGLSHEVLQWYICRMEAWFAADADTISLKTWDQEQVLTGGHGLMVQGYNPVIKALSKDIDIRLNHRVKRITNGYNKVMVTVKDGRNFIADAAIITVPLGVLKANLIEFEPKLPEWKQSAIADLGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHRVLVYMAAGRLACDLEKLTDESAAEFAMLQLKKMFPDATKPVQYLVSHWGTDPDTLGCYSYDLVGKPTDAYDRLRAPIGNLFFGGEAVSSDDHQGSVHGAYEAGIMAGETCRRHLIKRHGSLEMVQAVSSREETLEAAVPLQISRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="126434" e_stop="126886"/>
            <exon e_start="127990" e_stop="128105"/>
            <exon e_start="128195" e_stop="128283"/>
            <exon e_start="128389" e_stop="128502"/>
            <exon e_start="128902" e_stop="128989"/>
            <exon e_start="129081" e_stop="129166"/>
            <exon e_start="129265" e_stop="129367"/>
            <exon e_start="129652" e_stop="129749"/>
            <exon e_start="130062" e_stop="131461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126434" e_stop="126886" e_length="453"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127990" e_stop="128105" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128195" e_stop="128283" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.995">
            <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128389" e_stop="128502" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.965">
            <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128902" e_stop="128989" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.842" acc_prob="0.995">
            <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="129081" e_stop="129166" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.827" acc_prob="0.999">
            <gDNA_intron_boundary i_start="129167" i_stop="129264" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="129265" e_stop="129367" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="129652" e_stop="129749" e_length="98"/>
          </exon>
          <intron i_serial="8" don_prob="0.860" acc_prob="0.997">
            <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="130062" e_stop="131461" e_length="1400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126434" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126442" stop="126886"/>
              <exon start="127990" stop="128103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126446" stop="126886"/>
              <exon start="127990" stop="128096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126449" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126453" stop="126886"/>
              <exon start="127990" stop="128021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126461" stop="126886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126464" stop="126732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126469" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126471" stop="126886"/>
              <exon start="127990" stop="128027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126472" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126513" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126540" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126540" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126563" stop="126886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126586" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126620" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126620" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126685" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126708" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126828" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126850" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128060" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128100" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128100" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128230" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128230" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128239" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128429" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128485" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128953" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128953" stop="128989"/>
              <exon start="129081" stop="129166"/>
              <exon start="129265" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130062" stop="130424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130124" stop="130742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130124" stop="130741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130125" stop="130887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130760" stop="131367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131257" stop="131461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTCCAGACTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG : GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG : GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG : GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG : TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG : ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAG : GCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG : GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG : GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCTGTAAGTAATCTCTGCTTCTACACCAATTGAATTACAAGTCTTAGCTAGTACATGCATGAGAAAGGACTGAATTTCAATAGTGTTGCGCACATGATAGTTTACTTTGGTCTATTTTTGGTTCAATTGGTGAGTTCACAACATGTCGATTATTAGTTTATTACAGTTTGGTAATTGTTCATTTTCACTGTACTTTTAACGTAAAAAGGTAAAACAATCCGATAGAAAAGAGCGAAATATAGAAGTAGAAGGGAAAATGAGGAAGCACCTCCATCCTCTTATCACTTTCTTTCATTTCTTATTTTACTTCAAAAATTGTCTTTCTACATTGAATAAATAAGGGAAGTGATGCATATTCCTTTCATTAATTACGGCAAACTATAAGCAAATCTGCATTTGTTTGTCTAACACTCCTATAACGTAAACTTAGCTAAAGCAGTGTTGAGTAATCAGAGAATGCTAGCACAAAAGCACCTGTAAGCGCTCTTGTAAATCATCCGGTATATTTTACAGGTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGAC</gDNA_template>
            <first_frame> I  F  S  R  L  F  L  I  E  R  E  R  E  I  I  H  Y  *  D  L  E  R  D  V  L  R  F  R  D  *  F  L  V  D  L  C  K  R  S  K  N  L  R  S  I  V  E  D  L  L  R  *  Y  L  I  Q  V  M  I  M  S  W  L  D  K  L  R  S  S  S  N  L  S  R  F  I  A  G  L  L  I  F  M  L  Y  H  S  S  Q  L  I  S  N  F  L  I  P  I  Q  P  *  F  T  S  Q  S  P  P  F  S  V  F  F  L  C  S  K  T  F  T  L  L  S  R  F  K  Q  R  R  R  F  C  S  R  I  S  W  K  S  K  M  M  I  L  V  P  A  I  Y  L  T  :  A  F  Y  H  P  A  *  V  G  C  I  V  Q  L  R  L  *  L  *  L  V  E  V  S  Q  G  *  L  L  R  V  S  F  T  M  H  L  L  R :   F  S  Y  W  S  H  G  I  D  W  V  V  A  Y  I  P  T  T  H  L  V  A  Q  L  I  W  E  H  H   : G  S  T  G  C  V  M  R  I  R  W  L  H  *  Y  V  D  *  G  S  P  Y  I  A  L  V  V  T  T  Q  C  C  M  T  M  T  *  K   : V  T  C  C  L  T  W  M  V  I  K  F  L  K  T  Q  L  F  K  L  E  K  F  S  R  K  S  S  A  R :   L  R  K  *  G  M  S  I  V  M  T  C  Q  F  F  K  Q  Y  L  L  Y  W  T  G  I  Q  N  *   : G  K  K  D  F  P  M  R  C  C  N  G  T  Y  A  E  W  R  H  G  S  L  R  M  Q  T  R  S  L  *  K  P  G  I  R :   N  K  F  S  L  V  V  M  V  L  W  C  K  V  T  T  Q  S  *  R  P  Y  Q  K  T  L  I  S  V  *  I  T   : G  S  R  G  L  Q  M  G  I  T  R  *  W  L  Q  L  R  M  G  E  I  L  L  Q  M  L  L  L  *  L  C  L  *  V  F  *  K  P  T  *  L  S  L  S  Q  N  C  Q  N  G  N  N  L  Q  *  Q  I  L  V  *  A  M  K  T  R  L  H  Y  D  L  I  M  Y  F  G  Q  T  *  N  C  *  V  L  L  H  P  L  H  M  L  A  V  I  F  L  I  S  T  R  Q  Q  D  I  G  S  L  F  T  W  L  L  E  D  L  L  V  T  S  R  N  *  Q  M  N  L  L  L  S  L  Q  C  C  S  *  R  R  C  S  L  M  P  L  S  L  *  V  I  S  A  S  T  P  I  E  L  Q  V  L  A  S  T  C  M  R  K  D  *  I  S  I  V  L  R  T  *  *  F  T  L  V  Y  F  W  F  N  W  *  V  H  N  M  S  I  I  S  L  L  Q  F  G  N  C  S  F  S  L  Y  F  *  R  K  K  V  K  Q  S  D  R  K  E  R  N  I  E  V  E  G  K  M  R  K  H  L  H  P  L  I  T  F  F  H  F  L  F  Y  F  K  N  C  L  S  T  L  N  K  *  G  K  *  C  I  F  L  S  L  I  T  A  N  Y  K  Q  I  C  I  C  L  S  N  T  P  I  T  *  T  *  L  K  Q  C  *  V  I  R  E  C  *  H  K  S  T  C  K  R  S  C  K  S  S  G  I  F  Y  R  F  S  I  L  Y  L  T  G  V  R  I  Q  T  P  L  D  V  I  L  M  T  W  L  E  N  Q  R  M  L  T  I  G  F  G  H  Q  L  V  I  Y  S  L  E  G  K  L  *  A  V  M  I  I  K  G  R  F  M  V  R  M  K  L  E  L  W  L  V  K  R  A  A  D  I  S  S  K  D  M  E  V  W  K  W  F  R  L  F  P  L  G  R  R  P  L  K  Q  Q  F  L  S  K  S  Q  E  C  D  I  S  S  L  N  L  Q  V  T  F  Q  V  T  Y  V  V  C  S  S  L  Y  Y  Y  L  V  *  I  N  *  R  L  C  L  R  A  T  E  I  F  K  L  Y  I  Y  M  S  D </first_frame>
            <second_frame>  F  F  P  D  S  S  L  *  R  E  K  E  R  L  F  T  I  E  I  *  R  E  T  Y  Y  D  S  E  I  N  F  W  S  I  Y  A  N  E  A  K  I  F  D  Q  L  W  R  I  C  C  V  D  I  *  S  R  L  *  L  *  A  G  L  I  S  Y  G  L  L  L  I  S  A  A  S  L  P  A  F  L  S  S  C  F  I  I  H  L  N  *  F  L  I  S  *  F  L  Y  N  R  N  L  L  H  N  H  L  P  S  L  F  F  S  S  V  Q  K  H  S  L  F  S  P  D  L  N  N  V  G  V  F  V  H  G  F  H  G  N  Q  R  *  *  F  W  F  Q  Q  F  I  *  R :   H  F  T  T  P  L  R  *  A  A  *  F  S  S  V  C  N  C  N  W  W  R  Y  L  R  D  S  C  C  A  F  P  S  Q  C  I  F  *   : G  S  L  I  G  V  T  G  *  T  G  W  S  H  T  Y  R  L  L  I  W  L  P  S  *  Y  G  S  I  M  :  A  P  R  G  V  *  *  E  S  V  G  S  I  D  T  S  I  R  A  H  P  I  S  H  *  W  *  Q  L  S  A  V  *  P  *  L  R  K  :  L  H  A  V  *  H  G  W  S  S  S  S  S  K  H  S  C  S  S  W  R  S  F  Q  E  N  P  Q  R   : D  *  E  S  E  E  *  A  *  S  *  L  V  S  S  S  S  N  I  Y  C  T  G  Q  A  S  R  I  E  :  A  R  R  T  F  P  *  G  V  A  M  V  H  M  Q  N  G  G  M  V  R  C  G  C  R  H  D  L  S  E  N  L  G  S   : G  T  S  S  H  W  W  S  W  S  Y  G  A  R  L  Q  P  S  H  K  G  L  I  K  R  H  *  Y  P  F  K  S  Q  :  G  Q  E  D  Y  K  W  V  *  Q  G  D  G  Y  S  *  G  W  E  K  F  Y  C  R  C  C  Y  Y  N  C  A  S  R  C  S  E  S  Q  L  D  *  V  *  A  K  T  A  R  M  E  T  I  C  N  S  R  S  W  C  R  Q  *  K  Q  D  C  I  T  I  *  *  C  I  L  A  K  R  R  I  V  R  C  C  C  T  H  F  I  C  L  R  L  F  S  *  S  P  Q  G  N  R  T  S  G  P  C  L  H  G  C  W  K  T  C  L  *  P  R  E  I  N  R  *  I  C  C  *  V  C  N  V  A  V  E  E  D  V  P  *  C  H  *  A  C  K  *  S  L  L  L  H  Q  L  N  Y  K  S  *  L  V  H  A  *  E  R  T  E  F  Q  *  C  C  A  H  D  S  L  L  W  S  I  F  G  S  I  G  E  F  T  T  C  R  L  L  V  Y  Y  S  L  V  I  V  H  F  H  C  T  F  N  V  K  R  *  N  N  P  I  E  K  S  E  I  *  K  *  K  G  K  *  G  S  T  S  I  L  L  S  L  S  F  I  S  Y  F  T  S  K  I  V  F  L  H  *  I  N  K  G  S  D  A  Y  S  F  H  *  L  R  Q  T  I  S  K  S  A  F  V  C  L  T  L  L  *  R  K  L  S  *  S  S  V  E  *  S  E  N  A  S  T  K  A  P  V  S  A  L  V  N  H  P  V  Y  F  T  G  S  V  S  C  I  S  L  G  Y  G  S  R  H  P  W  M  L  F  L  *  L  G  W  K  T  N  G  C  L  R  *  A  S  G  T  N  W  *  S  I  L  W  R  G  S  C  E  Q  *  *  S  S  R  V  G  S  W  C  V  *  S  W  N  Y  G  W  *  N  V  P  P  T  S  H  Q  K  T  W  K  S  G  N  G  S  G  C  F  L  *  G  G  D  P  *  S  S  S  S  S  P  N  L  K  N  V  I  Y  L  L  *  I  C  K  L  H  F  K  *  L  M  *  F  V  P  V  C  T  I  T  L  Y  E  *  I  N  D  Y  V  S  V  Q  L  K  Y  S  N  Y  I  Y  I  C  Q   </second_frame>
            <third_frame>   F  F  Q  T  L  P  Y  R  E  R  K  R  D  Y  S  L  L  R  S  R  E  R  R  T  T  I  Q  R  L  I  S  G  R  S  M  Q  T  K  Q  K  S  S  I  N  C  G  G  F  V  A  L  I  F  D  P  G  Y  D  Y  E  L  A  *  *  A  T  V  F  F  *  S  Q  P  L  H  C  R  P  S  Y  L  H  A  L  S  F  I  S  I  N  F  *  F  L  D  S  Y  T  T  V  I  Y  F  T  I  T  S  L  L  C  F  F  P  L  F  K  N  I  H  S  S  L  P  I  *  T  T  S  A  F  L  F  T  D  F  M  E  I  K  D  D  D  S  G  S  S  N  L  F  D   : G  I  L  P  P  R  L  G  R  L  H  S  S  A  P  S  V  I  V  I  G  G  G  I  S  G  I  A  A  A  R  F  L  H  N  A  S  F  K  :  V  L  L  L  E  S  R  D  R  L  G  G  R  I  H  T  D  Y  S  F  G  C  P  V  D  M  G  A  S  W :   L  H  G  V  C  D  E  N  P  L  A  P  L  I  R  R  L  G  L  T  L  Y  R  T  S  G  D  N  S  V  L  Y  D  H  D  L  E  S :   Y  M  L  F  D  M  D  G  H  Q  V  P  Q  N  T  V  V  Q  V  G  E  V  F  K  K  I  L  S  E  :  T  E  K  V  R  N  E  H  S  H  D  L  S  V  L  Q  A  I  S  I  V  L  D  R  H  P  E  L  R :   Q  E  G  L  S  H  E  V  L  Q  W  Y  I  C  R  M  E  A  W  F  A  A  D  A  D  T  I  S  L  K  T  W  D  Q  :  E  Q  V  L  T  G  G  H  G  L  M  V  Q  G  Y  N  P  V  I  K  A  L  S  K  D  I  D  I  R  L  N  H  R :   V  K  R  I  T  N  G  Y  N  K  V  M  V  T  V  K  D  G  R  N  F  I  A  D  A  A  I  I  T  V  P  L  G  V  L  K  A  N  L  I  E  F  E  P  K  L  P  E  W  K  Q  S  A  I  A  D  L  G  V  G  N  E  N  K  I  A  L  R  F  D  N  V  F  W  P  N  V  E  L  L  G  V  V  A  P  T  S  Y  A  C  G  Y  F  L  N  L  H  K  A  T  G  H  R  V  L  V  Y  M  A  A  G  R  L  A  C  D  L  E  K  L  T  D  E  S  A  A  E  F  A  M  L  Q  L  K  K  M  F  P  D  A  T  K  P  V  S  N  L  C  F  Y  T  N  *  I  T  S  L  S  *  Y  M  H  E  K  G  L  N  F  N  S  V  A  H  M  I  V  Y  F  G  L  F  L  V  Q  L  V  S  S  Q  H  V  D  Y  *  F  I  T  V  W  *  L  F  I  F  T  V  L  L  T  *  K  G  K  T  I  R  *  K  R  A  K  Y  R  S  R  R  E  N  E  E  A  P  P  S  S  Y  H  F  L  S  F  L  I  L  L  Q  K  L  S  F  Y  I  E  *  I  R  E  V  M  H  I  P  F  I  N  Y  G  K  L  *  A  N  L  H  L  F  V  *  H  S  Y  N  V  N  L  A  K  A  V  L  S  N  Q  R  M  L  A  Q  K  H  L  *  A  L  L  *  I  I  R  Y  I  L  Q  V  Q  Y  L  V  S  H  W  G  T  D  P  D  T  L  G  C  Y  S  Y  D  L  V  G  K  P  T  D  A  Y  D  R  L  R  A  P  I  G  N  L  F  F  G  G  E  A  V  S  S  D  D  H  Q  G  S  V  H  G  A  Y  E  A  G  I  M  A  G  E  T  C  R  R  H  L  I  K  R  H  G  S  L  E  M  V  Q  A  V  S  S  R  E  E  T  L  E  A  A  V  P  L  Q  I  S  R  M  *  Y  I  F  S  E  F  A  S  Y  I  S  S  N  L  C  S  L  F  Q  F  V  L  L  P  C  M  N  K  L  T  I  M  S  P  C  N  *  N  I  Q  T  I  Y  I  Y  V  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126811" stop="126886"/>
                    <exon start="127990" stop="128105"/>
                    <exon start="128195" stop="128283"/>
                    <exon start="128389" stop="128502"/>
                    <exon start="128902" stop="128989"/>
                    <exon start="129081" stop="129166"/>
                    <exon start="129265" stop="129367"/>
                    <exon start="129652" stop="129749"/>
                    <exon start="130062" stop="130521"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1227</number_coding_nucleotides>
                  <number_encoded_amino_acids>409</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTSAFLFTDFMEIKDDDSGSSNLFDGILPPRLGRLHSSAPSVIVIGGGISGIAAARFLHNASFKVLLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCDENPLAPLIRRLGLTLYRTSGDNSVLYDHDLESYMLFDMDGHQVPQNTVVQVGEVFKKILSETEKVRNEHSHDLSVLQAISIVLDRHPELRQEGLSHEVLQWYICRMEAWFAADADTISLKTWDQEQVLTGGHGLMVQGYNPVIKALSKDIDIRLNHRVKRITNGYNKVMVTVKDGRNFIADAAIITVPLGVLKANLIEFEPKLPEWKQSAIADLGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHRVLVYMAAGRLACDLEKLTDESAAEFAMLQLKKMFPDATKPVSNLCFYTN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130981" stop="131319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIRYILQVQYLVSHWGTDPDTLGCYSYDLVGKPTDAYDRLRAPIGNLFFGGEAVSSDDHQGSVHGAYEAGIMAGETCRRHLIKRHGSLEMVQAVSSREETLEAAVPLQISRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="126434" e_stop="126886"/>
            <exon e_start="127990" e_stop="128105"/>
            <exon e_start="128195" e_stop="128283"/>
            <exon e_start="128389" e_stop="128502"/>
            <exon e_start="128902" e_stop="128989"/>
            <exon e_start="129081" e_stop="129367"/>
            <exon e_start="129652" e_stop="129749"/>
            <exon e_start="130062" e_stop="130491"/>
            <exon e_start="131002" e_stop="131601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.860" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126434" e_stop="126886" e_length="453"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="126887" i_stop="127989" i_length="1103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127990" e_stop="128105" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="128106" i_stop="128194" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128195" e_stop="128283" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.995">
            <gDNA_intron_boundary i_start="128284" i_stop="128388" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128389" e_stop="128502" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.965">
            <gDNA_intron_boundary i_start="128503" i_stop="128901" i_length="399"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128902" e_stop="128989" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.842" acc_prob="0.995">
            <gDNA_intron_boundary i_start="128990" i_stop="129080" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="129081" e_stop="129367" e_length="287"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="129368" i_stop="129651" i_length="284"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="129652" e_stop="129749" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.860" acc_prob="0.997">
            <gDNA_intron_boundary i_start="129750" i_stop="130061" i_length="312"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="130062" e_stop="130491" e_length="430"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="130492" i_stop="131001" i_length="510"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="131002" e_stop="131601" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126434" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126442" stop="126886"/>
              <exon start="127990" stop="128103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126446" stop="126886"/>
              <exon start="127990" stop="128096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126449" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126453" stop="126886"/>
              <exon start="127990" stop="128021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126461" stop="126886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126464" stop="126732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126469" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126471" stop="126886"/>
              <exon start="127990" stop="128027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126472" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126513" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126540" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126540" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126563" stop="126886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126586" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126620" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126620" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126708" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126828" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126850" stop="126886"/>
              <exon start="127990" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128100" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129367"/>
              <exon start="129652" stop="129670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128100" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128100" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128100" stop="128105"/>
              <exon start="128195" stop="128283"/>
              <exon start="128389" stop="128502"/>
              <exon start="128902" stop="128989"/>
              <exon start="129081" stop="129149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129305" stop="129367"/>
              <exon start="129652" stop="129749"/>
              <exon start="130062" stop="130491"/>
              <exon start="131002" stop="131268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129711" stop="129749"/>
              <exon start="130062" stop="130491"/>
              <exon start="131002" stop="131243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130062" stop="130424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130226" stop="130491"/>
              <exon start="131002" stop="131250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130263" stop="130491"/>
              <exon start="131002" stop="131467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130321" stop="130491"/>
              <exon start="131002" stop="131157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130394" stop="130491"/>
              <exon start="131002" stop="131601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130394" stop="130491"/>
              <exon start="131002" stop="131600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130429" stop="130491"/>
              <exon start="131002" stop="131467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131257" stop="131461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTCCAGACTCTTCCTTATAGAGAGAGAAAGAGAGATTATTCACTATTGAGATCTAGAGAGAGACGTACTACGATTCAGAGATTAATTTCTGGTCGATCTATGCAAACGAAGCAAAAATCTTCGATCAATTGTGGAGGATTTGTTGCGTTGATATTTGATCCAGGTTATGATTATGAGCTGGCTTGATAAGCTACGGTCTTCTTCTAATCTCAGCCGCTTCATTGCCGGCCTTCTTATCTTCATGCTTTATCATTCATCTCAATTAATTTCTAATTTCTTGATTCCTATACAACCGTAATTTACTTCACAATCACCTCCCTTCTCTGTTTTTTTCCTCTGTTCAAAAACATTCACTCTTCTCTCCCGATTTAAACAACGTCGGCGTTTTTGTTCACGGATTTCATGGAAATCAAAGATGATGATTCTGGTTCCAGCAATTTATTTGACG : GCATTTTACCACCCCGCTTAGGTAGGCTGCATAGTTCAGCTCCGTCTGTAATTGTAATTGGTGGAGGTATCTCAGGGATAGCTGCTGCGCGTTTCCTTCACAATGCATCTTTTAAG : GTTCTCTTATTGGAGTCACGGGATAGACTGGGTGGTCGCATACATACCGACTACTCATTTGGTTGCCCAGTTGATATGGGAGCATCATG : GCTCCACGGGGTGTGTGATGAGAATCCGTTGGCTCCATTGATACGTCGATTAGGGCTCACCCTATATCGCACTAGTGGTGACAACTCAGTGCTGTATGACCATGACTTAGAAAG : TTACATGCTGTTTGACATGGATGGTCATCAAGTTCCTCAAAACACAGTTGTTCAAGTTGGAGAAGTTTTCAAGAAAATCCTCAGCGAG : ACTGAGAAAGTGAGGAATGAGCATAGTCATGACTTGTCAGTTCTTCAAGCAATATCTATTGTACTGGACAGGCATCCAGAATTGAGGTATGCAGAGAAAATGTTTCTCATGTGGTCTGCTATTGTCTGTTGGAAGTGGAATGAAGTTATACATGCGCATACATATTGTGTTATTTGTAATGCAGGCAAGAAGGACTTTCCCATGAGGTGTTGCAATGGTACATATGCAGAATGGAGGCATGGTTCGCTGCGGATGCAGACACGATCTCTCTGAAAACCTGGGATCAG : GAACAAGTTCTCACTGGTGGTCATGGTCTTATGGTGCAAGGTTACAACCCAGTCATAAAGGCCTTATCAAAAGACATTGATATCCGTTTAAATCACAG : GGTCAAGAGGATTACAAATGGGTATAACAAGGTGATGGTTACAGTTAAGGATGGGAGAAATTTTATTGCAGATGCTGCTATTATAACTGTGCCTCTAGGTGTTCTGAAAGCCAACTTGATTGAGTTTGAGCCAAAACTGCCAGAATGGAAACAATCTGCAATAGCAGATCTTGGTGTAGGCAATGAAAACAAGATTGCATTACGATTTGATAATGTATTTTGGCCAAACGTAGAATTGTTAGGTGTTGTTGCACCCACTTCATATGCTTGCGGTTATTTTCTTAATCTCCACAAGGCAACAGGACATCGGGTCCTTGTTTACATGGCTGCTGGAAGACTTGCTTGTGACCTCGAGAAATTAACAGATGAATCTGCTGCTGAGTTTGCAATGTTGCAGTTGAAGAAGATGTTCCCTGATGCCACTAAGCCT : GTTCAGTATCTTGTATCTCACTGGGGTACGGATCCAGACACCCTTGGATGTTATTCTTATGACTTGGTTGGAAAACCAACGGATGCTTACGATAGGCTTCGGGCACCAATTGGTAATCTATTCTTTGGAGGGGAAGCTGTGAGCAGTGATGATCATCAAGGGTCGGTTCATGGTGCGTATGAAGCTGGAATTATGGCTGGTGAAACGTGCCGCCGACATCTCATCAAAAGACATGGAAGTCTGGAAATGGTTCAGGCTGTTTCCTCTAGGGAGGAGACCCTTGAAGCAGCAGTTCCTCTCCAAATCTCAAGAATGTGATATATCTTCTCTGAATTTGCAAGTTACATTTCAAGTAACTTATGTAGTTTGTTCCAGTTTGTACTATTACCTTGTATGAATAAATTAACGATTATGTCTCCGTGCAACTGAAATATTCAAACTATATATATATATGTCAGACTTTTTAATTGACCATGTCTGAGAGTTTTATTATTTCTTCTGTCGGAACAATTAGTTGTTTATTATGTTTTCATTATCCTTGAATAGGAAATTTGTATTGGAAAGCATTGCACAAGCATTTCCCTTTGAATGAATCACATT</gDNA_template>
            <first_frame> I  F  S  R  L  F  L  I  E  R  E  R  E  I  I  H  Y  *  D  L  E  R  D  V  L  R  F  R  D  *  F  L  V  D  L  C  K  R  S  K  N  L  R  S  I  V  E  D  L  L  R  *  Y  L  I  Q  V  M  I  M  S  W  L  D  K  L  R  S  S  S  N  L  S  R  F  I  A  G  L  L  I  F  M  L  Y  H  S  S  Q  L  I  S  N  F  L  I  P  I  Q  P  *  F  T  S  Q  S  P  P  F  S  V  F  F  L  C  S  K  T  F  T  L  L  S  R  F  K  Q  R  R  R  F  C  S  R  I  S  W  K  S  K  M  M  I  L  V  P  A  I  Y  L  T  :  A  F  Y  H  P  A  *  V  G  C  I  V  Q  L  R  L  *  L  *  L  V  E  V  S  Q  G  *  L  L  R  V  S  F  T  M  H  L  L  R :   F  S  Y  W  S  H  G  I  D  W  V  V  A  Y  I  P  T  T  H  L  V  A  Q  L  I  W  E  H  H   : G  S  T  G  C  V  M  R  I  R  W  L  H  *  Y  V  D  *  G  S  P  Y  I  A  L  V  V  T  T  Q  C  C  M  T  M  T  *  K   : V  T  C  C  L  T  W  M  V  I  K  F  L  K  T  Q  L  F  K  L  E  K  F  S  R  K  S  S  A  R :   L  R  K  *  G  M  S  I  V  M  T  C  Q  F  F  K  Q  Y  L  L  Y  W  T  G  I  Q  N  *  G  M  Q  R  K  C  F  S  C  G  L  L  L  S  V  G  S  G  M  K  L  Y  M  R  I  H  I  V  L  F  V  M  Q  A  R  R  T  F  P  *  G  V  A  M  V  H  M  Q  N  G  G  M  V  R  C  G  C  R  H  D  L  S  E  N  L  G  S   : G  T  S  S  H  W  W  S  W  S  Y  G  A  R  L  Q  P  S  H  K  G  L  I  K  R  H  *  Y  P  F  K  S  Q  :  G  Q  E  D  Y  K  W  V  *  Q  G  D  G  Y  S  *  G  W  E  K  F  Y  C  R  C  C  Y  Y  N  C  A  S  R  C  S  E  S  Q  L  D  *  V  *  A  K  T  A  R  M  E  T  I  C  N  S  R  S  W  C  R  Q  *  K  Q  D  C  I  T  I  *  *  C  I  L  A  K  R  R  I  V  R  C  C  C  T  H  F  I  C  L  R  L  F  S  *  S  P  Q  G  N  R  T  S  G  P  C  L  H  G  C  W  K  T  C  L  *  P  R  E  I  N  R  *  I  C  C  *  V  C  N  V  A  V  E  E  D  V  P  *  C  H  *  A   : C  S  V  S  C  I  S  L  G  Y  G  S  R  H  P  W  M  L  F  L  *  L  G  W  K  T  N  G  C  L  R  *  A  S  G  T  N  W  *  S  I  L  W  R  G  S  C  E  Q  *  *  S  S  R  V  G  S  W  C  V  *  S  W  N  Y  G  W  *  N  V  P  P  T  S  H  Q  K  T  W  K  S  G  N  G  S  G  C  F  L  *  G  G  D  P  *  S  S  S  S  S  P  N  L  K  N  V  I  Y  L  L  *  I  C  K  L  H  F  K  *  L  M  *  F  V  P  V  C  T  I  T  L  Y  E  *  I  N  D  Y  V  S  V  Q  L  K  Y  S  N  Y  I  Y  I  C  Q  T  F  *  L  T  M  S  E  S  F  I  I  S  S  V  G  T  I  S  C  L  L  C  F  H  Y  P  *  I  G  N  L  Y  W  K  A  L  H  K  H  F  P  L  N  E  S  H  </first_frame>
            <second_frame>  F  F  P  D  S  S  L  *  R  E  K  E  R  L  F  T  I  E  I  *  R  E  T  Y  Y  D  S  E  I  N  F  W  S  I  Y  A  N  E  A  K  I  F  D  Q  L  W  R  I  C  C  V  D  I  *  S  R  L  *  L  *  A  G  L  I  S  Y  G  L  L  L  I  S  A  A  S  L  P  A  F  L  S  S  C  F  I  I  H  L  N  *  F  L  I  S  *  F  L  Y  N  R  N  L  L  H  N  H  L  P  S  L  F  F  S  S  V  Q  K  H  S  L  F  S  P  D  L  N  N  V  G  V  F  V  H  G  F  H  G  N  Q  R  *  *  F  W  F  Q  Q  F  I  *  R :   H  F  T  T  P  L  R  *  A  A  *  F  S  S  V  C  N  C  N  W  W  R  Y  L  R  D  S  C  C  A  F  P  S  Q  C  I  F  *   : G  S  L  I  G  V  T  G  *  T  G  W  S  H  T  Y  R  L  L  I  W  L  P  S  *  Y  G  S  I  M  :  A  P  R  G  V  *  *  E  S  V  G  S  I  D  T  S  I  R  A  H  P  I  S  H  *  W  *  Q  L  S  A  V  *  P  *  L  R  K  :  L  H  A  V  *  H  G  W  S  S  S  S  S  K  H  S  C  S  S  W  R  S  F  Q  E  N  P  Q  R   : D  *  E  S  E  E  *  A  *  S  *  L  V  S  S  S  S  N  I  Y  C  T  G  Q  A  S  R  I  E  V  C  R  E  N  V  S  H  V  V  C  Y  C  L  L  E  V  E  *  S  Y  T  C  A  Y  I  L  C  Y  L  *  C  R  Q  E  G  L  S  H  E  V  L  Q  W  Y  I  C  R  M  E  A  W  F  A  A  D  A  D  T  I  S  L  K  T  W  D  Q  :  E  Q  V  L  T  G  G  H  G  L  M  V  Q  G  Y  N  P  V  I  K  A  L  S  K  D  I  D  I  R  L  N  H  R :   V  K  R  I  T  N  G  Y  N  K  V  M  V  T  V  K  D  G  R  N  F  I  A  D  A  A  I  I  T  V  P  L  G  V  L  K  A  N  L  I  E  F  E  P  K  L  P  E  W  K  Q  S  A  I  A  D  L  G  V  G  N  E  N  K  I  A  L  R  F  D  N  V  F  W  P  N  V  E  L  L  G  V  V  A  P  T  S  Y  A  C  G  Y  F  L  N  L  H  K  A  T  G  H  R  V  L  V  Y  M  A  A  G  R  L  A  C  D  L  E  K  L  T  D  E  S  A  A  E  F  A  M  L  Q  L  K  K  M  F  P  D  A  T  K  P  :  V  Q  Y  L  V  S  H  W  G  T  D  P  D  T  L  G  C  Y  S  Y  D  L  V  G  K  P  T  D  A  Y  D  R  L  R  A  P  I  G  N  L  F  F  G  G  E  A  V  S  S  D  D  H  Q  G  S  V  H  G  A  Y  E  A  G  I  M  A  G  E  T  C  R  R  H  L  I  K  R  H  G  S  L  E  M  V  Q  A  V  S  S  R  E  E  T  L  E  A  A  V  P  L  Q  I  S  R  M  *  Y  I  F  S  E  F  A  S  Y  I  S  S  N  L  C  S  L  F  Q  F  V  L  L  P  C  M  N  K  L  T  I  M  S  P  C  N  *  N  I  Q  T  I  Y  I  Y  V  R  L  F  N  *  P  C  L  R  V  L  L  F  L  L  S  E  Q  L  V  V  Y  Y  V  F  I  I  L  E  *  E  I  C  I  G  K  H  C  T  S  I  S  L  *  M  N  H  I </second_frame>
            <third_frame>   F  F  Q  T  L  P  Y  R  E  R  K  R  D  Y  S  L  L  R  S  R  E  R  R  T  T  I  Q  R  L  I  S  G  R  S  M  Q  T  K  Q  K  S  S  I  N  C  G  G  F  V  A  L  I  F  D  P  G  Y  D  Y  E  L  A  *  *  A  T  V  F  F  *  S  Q  P  L  H  C  R  P  S  Y  L  H  A  L  S  F  I  S  I  N  F  *  F  L  D  S  Y  T  T  V  I  Y  F  T  I  T  S  L  L  C  F  F  P  L  F  K  N  I  H  S  S  L  P  I  *  T  T  S  A  F  L  F  T  D  F  M  E  I  K  D  D  D  S  G  S  S  N  L  F  D   : G  I  L  P  P  R  L  G  R  L  H  S  S  A  P  S  V  I  V  I  G  G  G  I  S  G  I  A  A  A  R  F  L  H  N  A  S  F  K  :  V  L  L  L  E  S  R  D  R  L  G  G  R  I  H  T  D  Y  S  F  G  C  P  V  D  M  G  A  S  W :   L  H  G  V  C  D  E  N  P  L  A  P  L  I  R  R  L  G  L  T  L  Y  R  T  S  G  D  N  S  V  L  Y  D  H  D  L  E  S :   Y  M  L  F  D  M  D  G  H  Q  V  P  Q  N  T  V  V  Q  V  G  E  V  F  K  K  I  L  S  E  :  T  E  K  V  R  N  E  H  S  H  D  L  S  V  L  Q  A  I  S  I  V  L  D  R  H  P  E  L  R  Y  A  E  K  M  F  L  M  W  S  A  I  V  C  W  K  W  N  E  V  I  H  A  H  T  Y  C  V  I  C  N  A  G  K  K  D  F  P  M  R  C  C  N  G  T  Y  A  E  W  R  H  G  S  L  R  M  Q  T  R  S  L  *  K  P  G  I  R :   N  K  F  S  L  V  V  M  V  L  W  C  K  V  T  T  Q  S  *  R  P  Y  Q  K  T  L  I  S  V  *  I  T   : G  S  R  G  L  Q  M  G  I  T  R  *  W  L  Q  L  R  M  G  E  I  L  L  Q  M  L  L  L  *  L  C  L  *  V  F  *  K  P  T  *  L  S  L  S  Q  N  C  Q  N  G  N  N  L  Q  *  Q  I  L  V  *  A  M  K  T  R  L  H  Y  D  L  I  M  Y  F  G  Q  T  *  N  C  *  V  L  L  H  P  L  H  M  L  A  V  I  F  L  I  S  T  R  Q  Q  D  I  G  S  L  F  T  W  L  L  E  D  L  L  V  T  S  R  N  *  Q  M  N  L  L  L  S  L  Q  C  C  S  *  R  R  C  S  L  M  P  L  S  L :   F  S  I  L  Y  L  T  G  V  R  I  Q  T  P  L  D  V  I  L  M  T  W  L  E  N  Q  R  M  L  T  I  G  F  G  H  Q  L  V  I  Y  S  L  E  G  K  L  *  A  V  M  I  I  K  G  R  F  M  V  R  M  K  L  E  L  W  L  V  K  R  A  A  D  I  S  S  K  D  M  E  V  W  K  W  F  R  L  F  P  L  G  R  R  P  L  K  Q  Q  F  L  S  K  S  Q  E  C  D  I  S  S  L  N  L  Q  V  T  F  Q  V  T  Y  V  V  C  S  S  L  Y  Y  Y  L  V  *  I  N  *  R  L  C  L  R  A  T  E  I  F  K  L  Y  I  Y  M  S  D  F  L  I  D  H  V  *  E  F  Y  Y  F  F  C  R  N  N  *  L  F  I  M  F  S  L  S  L  N  R  K  F  V  L  E  S  I  A  Q  A  F  P  F  E  *  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129260" stop="129367"/>
                    <exon start="129652" stop="129749"/>
                    <exon start="130062" stop="130491"/>
                    <exon start="131002" stop="131319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRQEGLSHEVLQWYICRMEAWFAADADTISLKTWDQEQVLTGGHGLMVQGYNPVIKALSKDIDIRLNHRVKRITNGYNKVMVTVKDGRNFIADAAIITVPLGVLKANLIEFEPKLPEWKQSAIADLGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHRVLVYMAAGRLACDLEKLTDESAAEFAMLQLKKMFPDATKPVQYLVSHWGTDPDTLGCYSYDLVGKPTDAYDRLRAPIGNLFFGGEAVSSDDHQGSVHGAYEAGIMAGETCRRHLIKRHGSLEMVQAVSSREETLEAAVPLQISRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="131688" PGL_stop="130996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131688" e_stop="131650"/>
            <exon e_start="131473" e_stop="130996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.795"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.795">
            <gDNA_exon_boundary e_start="131688" e_stop="131650" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131649" i_stop="131474" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="131473" e_stop="130996" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131688" stop="131650"/>
              <exon start="131473" stop="130996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131457" stop="131085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAATCTTTTTTTTCCTTTTTTCTTCTTTTTGGTTTGT : GTCAATTAAAAAGTCTGACATATATATATATAGTTTGAATATTTCAGTTGCACGGAGACATAATCGTTAATTTATTCATACAAGGTAATAGTACAAACTGGAACAAACTACATAAGTTACTTGAAATGTAACTTGCAAATTCAGAGAAGATATATCACATTCTTGAGATTTGGAGAGGAACTGCTGCTTCAAGGGTCTCCTCCCTAGAGGAAACAGCCTGAACCATTTCCAGACTTCCATGTCTTTTGATGAGATGTCGGCGGCACGTTTCACCAGCCATAATTCCAGCTTCATACGCACCATGAACCGACCCTTGATGATCATCACTGCTCACAGCTTCCCCTCCAAAGAATAGATTACCAATTGGTGCCCGAAGCCTATCGTAAGCATCCGTTGGTTTTCCAACCAAGTCATAAGAATAACATCCAAGGGTGTCTGGATCCGTACCCCAGTGAGATACAAGATACTGAACCTGTAA</gDNA_template>
            <first_frame> S  N  L  F  F  P  F  F  F  F  L  V  C  :  V  N  *  K  V  *  H  I  Y  I  *  F  E  Y  F  S  C  T  E  T  *  S  L  I  Y  S  Y  K  V  I  V  Q  T  G  T  N  Y  I  S  Y  L  K  C  N  L  Q  I  Q  R  R  Y  I  T  F  L  R  F  G  E  E  L  L  L  Q  G  S  P  P  *  R  K  Q  P  E  P  F  P  D  F  H  V  F  *  *  D  V  G  G  T  F  H  Q  P  *  F  Q  L  H  T  H  H  E  P  T  L  D  D  H  H  C  S  Q  L  P  L  Q  R  I  D  Y  Q  L  V  P  E  A  Y  R  K  H  P  L  V  F  Q  P  S  H  K  N  N  I  Q  G  C  L  D  P  Y  P  S  E  I  Q  D  T  E  P  V  </first_frame>
            <second_frame>  L  I  F  F  F  L  F  S  S  F  W  F  V :   S  I  K  K  S  D  I  Y  I  Y  S  L  N  I  S  V  A  R  R  H  N  R  *  F  I  H  T  R  *  *  Y  K  L  E  Q  T  T  *  V  T  *  N  V  T  C  K  F  R  E  D  I  S  H  S  *  D  L  E  R  N  C  C  F  K  G  L  L  P  R  G  N  S  L  N  H  F  Q  T  S  M  S  F  D  E  M  S  A  A  R  F  T  S  H  N  S  S  F  I  R  T  M  N  R  P  L  M  I  I  T  A  H  S  F  P  S  K  E  *  I  T  N  W  C  P  K  P  I  V  S  I  R  W  F  S  N  Q  V  I  R  I  T  S  K  G  V  W  I  R  T  P  V  R  Y  K  I  L  N  L  * </second_frame>
            <third_frame>   *  S  F  F  S  F  F  L  L  F  G  L   : C  Q  L  K  S  L  T  Y  I  Y  I  V  *  I  F  Q  L  H  G  D  I  I  V  N  L  F  I  Q  G  N  S  T  N  W  N  K  L  H  K  L  L  E  M  *  L  A  N  S  E  K  I  Y  H  I  L  E  I  W  R  G  T  A  A  S  R  V  S  S  L  E  E  T  A  *  T  I  S  R  L  P  C  L  L  M  R  C  R  R  H  V  S  P  A  I  I  P  A  S  Y  A  P  *  T  D  P  *  *  S  S  L  L  T  A  S  P  P  K  N  R  L  P  I  G  A  R  S  L  S  *  A  S  V  G  F  P  T  K  S  *  E  *  H  P  R  V  S  G  S  V  P  Q  *  D  T  R  Y  *  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131191" stop="130997"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLHTHHEPTLDDHHCSQLPLQRIDYQLVPEAYRKHPLVFQPSHKNNIQGCLDPYPSEIQDTEPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="132461" PGL_stop="135196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132461" e_stop="132567"/>
            <exon e_start="132662" e_stop="132739"/>
            <exon e_start="132861" e_stop="133028"/>
            <exon e_start="133635" e_stop="133683"/>
            <exon e_start="133954" e_stop="134027"/>
            <exon e_start="135103" e_stop="135196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.691" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.688" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132461" e_stop="132567" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.691" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132568" i_stop="132661" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132662" e_stop="132739" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.920" acc_prob="0.994">
            <gDNA_intron_boundary i_start="132740" i_stop="132860" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="132861" e_stop="133028" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.998">
            <gDNA_intron_boundary i_start="133029" i_stop="133634" i_length="606"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="133635" e_stop="133683" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.688">
            <gDNA_intron_boundary i_start="133684" i_stop="133953" i_length="270"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="133954" e_stop="134027" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="134028" i_stop="135102" i_length="1075"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="135103" e_stop="135196" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132461" stop="132567"/>
              <exon start="132662" stop="132739"/>
              <exon start="132861" stop="133028"/>
              <exon start="133635" stop="133683"/>
              <exon start="133954" stop="134027"/>
              <exon start="135103" stop="135143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132463" stop="132567"/>
              <exon start="132662" stop="132739"/>
              <exon start="132861" stop="133028"/>
              <exon start="133635" stop="133683"/>
              <exon start="133954" stop="133977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132482" stop="132567"/>
              <exon start="132662" stop="132739"/>
              <exon start="132861" stop="133028"/>
              <exon start="133635" stop="133683"/>
              <exon start="133954" stop="134027"/>
              <exon start="135103" stop="135196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132693" stop="132739"/>
              <exon start="132861" stop="133028"/>
              <exon start="133635" stop="133683"/>
              <exon start="133954" stop="134027"/>
              <exon start="135103" stop="135196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287473" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAACAGATCCCTTCTCCCTCTCTAAATTCTCCATTTTTCTTCCTTATTTTTTTTACAAATTTTATTCATGGCATCCACTGGGCACACCAATCTGAATGCAAAACTT : GTATTGTTAGGTGACATGGGAGCTGGTAAATCAAGCTTGGTTATACGATTCATAAAGGGCCAATTCCTTGAATTTCAA : GAATCGACGATTGGGGCGGCTTTCTTTTCGTCTACATTGGCAGTTAATAATGCTACGGTGAAGTTTGAGATATGGGATACTGCTGGGCAGGAGAGGTACCATAGCTTAGCACCTATGTATTATAGAGGCGCTGCAGCTGCTATTATTGTCTATGATATCACTAGCTCG : GATTCATTTGCAAAGGCAAAGAAATGGGTGCAAGAATTGCAGAAGCAAG : GTAATTCTAACATGATCATGGCTCTTGCTGGCAATAAGGCAGATCTAGAAGATCGAAGGAACGTTCCTGCAGAG : GAGGCACGCTTGTATGCAGAGGAAAATGGCCTCTTTTTCATGGAGACCTCTGCCAAAACTGCTGCGAATGTCAATGATATTTTCTATGAAATAG</gDNA_template>
            <first_frame> T  T  D  P  F  S  L  S  K  F  S  I  F  L  P  Y  F  F  Y  K  F  Y  S  W  H  P  L  G  T  P  I  *  M  Q  N  L :   Y  C  *  V  T  W  E  L  V  N  Q  A  W  L  Y  D  S  *  R  A  N  S  L  N  F  K :   N  R  R  L  G  R  L  S  F  R  L  H  W  Q  L  I  M  L  R  *  S  L  R  Y  G  I  L  L  G  R  R  G  T  I  A  *  H  L  C  I  I  E  A  L  Q  L  L  L  L  S  M  I  S  L  A  R :   I  H  L  Q  R  Q  R  N  G  C  K  N  C  R  S  K  :  V  I  L  T  *  S  W  L  L  L  A  I  R  Q  I  *  K  I  E  G  T  F  L  Q  R :   R  H  A  C  M  Q  R  K  M  A  S  F  S  W  R  P  L  P  K  L  L  R  M  S  M  I  F  S  M  K  * </first_frame>
            <second_frame>  Q  Q  I  P  S  P  S  L  N  S  P  F  F  F  L  I  F  F  T  N  F  I  H  G  I  H  W  A  H  Q  S  E  C  K  T   : C  I  V  R  *  H  G  S  W  *  I  K  L  G  Y  T  I  H  K  G  P  I  P  *  I  S   : R  I  D  D  W  G  G  F  L  F  V  Y  I  G  S  *  *  C  Y  G  E  V  *  D  M  G  Y  C  W  A  G  E  V  P  *  L  S  T  Y  V  L  *  R  R  C  S  C  Y  Y  C  L  *  Y  H  *  L   : G  F  I  C  K  G  K  E  M  G  A  R  I  A  E  A  R :   *  F  *  H  D  H  G  S  C  W  Q  *  G  R  S  R  R  S  K  E  R  S  C  R   : G  G  T  L  V  C  R  G  K  W  P  L  F  H  G  D  L  C  Q  N  C  C  E  C  Q  *  Y  F  L  *  N   </second_frame>
            <third_frame>   N  R  S  L  L  P  L  *  I  L  H  F  S  S  L  F  F  L  Q  I  L  F  M  A  S  T  G  H  T  N  L  N  A  K  L  :  V  L  L  G  D  M  G  A  G  K  S  S  L  V  I  R  F  I  K  G  Q  F  L  E  F  Q  :  E  S  T  I  G  A  A  F  F  S  S  T  L  A  V  N  N  A  T  V  K  F  E  I  W  D  T  A  G  Q  E  R  Y  H  S  L  A  P  M  Y  Y  R  G  A  A  A  A  I  I  V  Y  D  I  T  S  S  :  D  S  F  A  K  A  K  K  W  V  Q  E  L  Q  K  Q   : G  N  S  N  M  I  M  A  L  A  G  N  K  A  D  L  E  D  R  R  N  V  P  A  E  :  E  A  R  L  Y  A  E  E  N  G  L  F  F  M  E  T  S  A  K  T  A  A  N  V  N  D  I  F  Y  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0165K22.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132487" stop="132567"/>
                    <exon start="132662" stop="132739"/>
                    <exon start="132861" stop="133028"/>
                    <exon start="133635" stop="133683"/>
                    <exon start="133954" stop="134027"/>
                    <exon start="135103" stop="135195"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILHFSSLFFLQILFMASTGHTNLNAKLVLLGDMGAGKSSLVIRFIKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFAKAKKWVQELQKQGNSNMIMALAGNKADLEDRRNVPAEEARLYAEENGLFFMETSAKTAANVNDIFYEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 283 chains have been computed
$ 
$ memory statistics:
$ 688864 bytes spliced alignments in total
$ 224 spliced alignments have been stored
$ 3075 bytes was the average size of a spliced alignment
$ 39032 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1697 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 297 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:36:13
-->
