<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:34:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208577" ref_strand="+" ref_description="SGN-E208577 [cLEC-39-H22]">
      <seq>gaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctgtaagttgttactttgtagtagatctggacttgtttatgtatttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="865" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="565" g_stop="331" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="1" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="473" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E208577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="565" e_stop="331"/>
          <exon e_start="238" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAG</genome_strand>
        <mrna_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327853" ref_strand="+" ref_description="SGN-E327853 [cTOC-22-C9]">
      <seq>gaaagaggacattttctttgaggacattttatgcactttctcccattatttaacaaggtatctaagtgatcatccaaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaattcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcgacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgggttgtctggtaaagatggtattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="957" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="657" g_stop="331" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="52" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="514" r_length="187" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E327853" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="657" e_stop="331"/>
          <exon e_start="238" e_stop="52"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGGTCATTTTCTTTGAGGACATTTTAGGCACTTTCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTG</genome_strand>
        <mrna_strand>GAAAGAGGACATTTTCTTTGAGGACATTTTATGCACTTTCTCCCATTATTTAACAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAATTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCGACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGGGTTGTCTGGTAAAGATGGTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307825" ref_strand="+" ref_description="SGN-E307825 [cLEY-20-E14]">
      <seq>aaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="882" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="582" g_stop="331" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="56" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="435" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E307825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="582" e_stop="331"/>
          <exon e_start="238" e_stop="56"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATT</genome_strand>
        <mrna_strand>AAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267942" ref_strand="+" ref_description="SGN-E267942 [cLEI-12-L24]">
      <seq>aaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="882" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="582" g_stop="331" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="61" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="430" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E267942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="582" e_stop="331"/>
          <exon e_start="238" e_stop="61"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATG</genome_strand>
        <mrna_strand>AAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336769" ref_strand="+" ref_description="SGN-E336769 [cTOE-5-P18]">
      <seq>ccatttagcaaagtaaaagggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgatgctctaggagggccacacattcctctcaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="863" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="563" g_stop="331" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="61" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="411" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E336769" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="563" e_stop="331"/>
          <exon e_start="238" e_stop="61"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATG</genome_strand>
        <mrna_strand>CCATTTAGCAAAGTAAAAGGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337237" ref_strand="+" ref_description="SGN-E337237 [cTOE-7-E12]">
      <seq>catttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaagagggccacacattcctctcaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="862" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="562" g_stop="331" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="61" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="410" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E337237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="562" e_stop="331"/>
          <exon e_start="238" e_stop="61"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATG</genome_strand>
        <mrna_strand>CATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203817" ref_strand="+" ref_description="SGN-E203817 [cLEC-17-L20]">
      <seq>gaaaatcctaaccttgtcatggactattacaaggacacttgccctcaagctgaaaaaatcatcaaagaacaagtcaaacttctctacaaaccccacaaaaatactgcattttcttggctaagaaacatattccatgactgctttggtgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcacatacattgagactattaaagaagctgtagaaagggagtgccctggggttgcttcttgggctgatattcttgggttgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="780" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="480" g_stop="331" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="70" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="319" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E203817" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="480" e_stop="331"/>
          <exon e_start="238" e_stop="70"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTG</genome_strand>
        <mrna_strand>GAAAATCCTAACCTTGTCATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAAAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACCCCACAAAAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGGTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCACATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGGGTTGCTTCTTGGGCTGATATTCTTGGGTTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277736" ref_strand="-" ref_description="SGN-E277736 [cLEL-5-K12](-)">
      <seq>gcacgagcaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagcctcccaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggacgttgtttcttgtgctgatattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="842" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="545" g_stop="331" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="79" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="376" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E277736" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277736" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="545" e_stop="331"/>
          <exon e_start="238" e_stop="79"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGG-TGTTGTTTCTTGTGCTGATATTCTTG</genome_strand>
        <mrna_strand>GCACGAGCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTCCCAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGACGTTGTTTCTTGTGCTGATATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337905" ref_strand="+" ref_description="SGN-E337905 [cTOE-14-O20]">
      <seq>taaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="850" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="550" g_stop="331" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="80" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E337905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="550" e_stop="331"/>
          <exon e_start="238" e_stop="80"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTT</genome_strand>
        <mrna_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200410" ref_strand="+" ref_description="SGN-E200410 [cLEC-1-K9]">
      <seq>atggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttggttcttgtgctgatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="846" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="546" g_stop="331" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="80" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="375" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E200410" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="546" e_stop="331"/>
          <exon e_start="238" e_stop="80"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTT</genome_strand>
        <mrna_strand>ATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGGTTCTTGTGCTGATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201508" ref_strand="+" ref_description="SGN-E201508 [cLEC-4-F5]">
      <seq>gaccatttagcaaagtaaaagggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="865" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="565" g_stop="331" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="81" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="393" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E201508" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="565" e_stop="331"/>
          <exon e_start="238" e_stop="81"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCT</genome_strand>
        <mrna_strand>GACCATTTAGCAAAGTAAAAGGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309958" ref_strand="+" ref_description="SGN-E309958 [cTOA-4-E3]">
      <seq>tttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagctttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="860" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="560" g_stop="331" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="107" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="362" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E309958" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="560" e_stop="331"/>
          <exon e_start="238" e_stop="107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCT</genome_strand>
        <mrna_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGCTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211184" ref_strand="+" ref_description="SGN-E211184 [cLEC-70-O24]">
      <seq>tcatccaaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="888" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="588" g_stop="331" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="125" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="372" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E211184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="588" e_stop="331"/>
          <exon e_start="238" e_stop="125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCT</genome_strand>
        <mrna_strand>TCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336324" ref_strand="+" ref_description="SGN-E336324 [cTOE-10-H13]">
      <seq>aaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaaattcagatacattgagactattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="854" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="554" g_stop="331" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="131" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="332" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E336324" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="554" e_stop="331"/>
          <exon e_start="238" e_stop="131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAA</genome_strand>
        <mrna_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAAATTCAGATACATTGAGACTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397413" ref_strand="+" ref_description="SGN-E397413 [TUS-45-N5]">
      <seq>gtaaaatggctaccaaatatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgctccttgttgctggactcaacaaggaggatgcttctgagaaagagacagacaggagttttggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="851" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="551" g_stop="331" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="161" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="297" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E397413" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="551" e_stop="331"/>
          <exon e_start="238" e_stop="161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATG</genome_strand>
        <mrna_strand>GTAAAATGGCTACCAAATATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGC-TCCTTGTTGCTGGACTCAACAAGGAGGATGCT-TCTGAGAAAGAGACAGACAGGAGTTTTGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297010" ref_strand="+" ref_description="SGN-E297010 [cLEW-6-D5]">
      <seq>agcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgctgctggactcaacaaggcggatgctgtctgagaaagagacagacaggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="857" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="557" g_stop="331" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="170" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="296" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E297010" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="557" e_stop="331"/>
          <exon e_start="238" e_stop="170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGT</genome_strand>
        <mrna_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGCTGCTGGACTCAACAAGGCGGATGCTGTCTGAGAAAGAGACAGACAGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201299" ref_strand="+" ref_description="SGN-E201299 [cLEC-4-E1]">
      <seq>ccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttggtttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="863" stop="31"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="563" g_stop="331" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="238" g_stop="227" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="245" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E201299" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="563" e_stop="331"/>
          <exon e_start="238" e_stop="227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCT</genome_strand>
        <mrna_strand>CCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGGTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208482" ref_strand="+" ref_description="SGN-E208482 [cLEC-39-G21]">
      <seq>gaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="865" stop="102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="565" g_stop="402" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E208482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="565" e_stop="402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAAC</genome_strand>
        <mrna_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709338" ref_strand="+" ref_description="SGN-E709338 [FA51CA04]">
      <seq>cttatccttaaacctgatccgattggcccttccctccacctctcattccctccttctcccttcaccccacaccaccaaaacacccaagatttccaccattctgataagaatcctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcacaagagcacaagaagctgttgtgggtgcgaggccctttctctgagactttggttgaggtactttacaaccatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagcggcgttggtggttgtcccccggcgaccggggcctttgtggtggttctaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6457" stop="7747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6757" g_stop="7444" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E709338" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6757" e_stop="7444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCCTTAAACCTGATCCGATTGGCCCTTCCCTCCACCTCTCATTCCCTCCTTCTCCCTTCACCCCACACCACCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGG-CCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAA-CATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGT-CACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTG</genome_strand>
        <mrna_strand>CTTATCCTTAAACCTGATCCGATTGGCCCTTCCCTCCACCTCTCATTCCCTCCTTCTCCCTTCACCCCACACCACCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCACAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACCATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGCGGCGTTGGTGGTTGTCCCCCGGCGACCGGGGCCTTTGTGGTGGTTCTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316471" ref_strand="+" ref_description="SGN-E316471 [cTOA-25-C23]">
      <seq>ccgattgggcccttccctctacctctcattccctccttctcctttcaccccacaccaccaaaacacccaagatttccaccattctgataagaatcctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttacaactatatcatcaaaaaagctgaaggccagattagagatttgaaagctcttggccttgatacactattatcagtgttggcaaaaagggtaattctatttcctccgcaggccttacatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6475" stop="7809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6775" g_stop="7509" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E316471" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6775" e_stop="7509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATT-GGCCCTTCCCTCCACCTCTCATTCCCTCCTTCTCCCTTCACCCCACACCACCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTG-AGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCT</genome_strand>
        <mrna_strand>CCGATTGGGCCCTTCCCTCTACCTCTCATTCCCTCCTTCTCCTTTCACCCCACACCACCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTT-ACAACTATATCATCAAAAAAGCTGAAGGCCA-GATTAGAGATTTGAAAGCTCTTGGCCTTGA-TACACTATTATCAGTGTTGGCAAAAAGGGTAATTC-TATTTCCTCCGCAGGCCTTACATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746541" ref_strand="+" ref_description="SGN-E746541 [GI|47104209]">
      <seq>ccaaaacacccaagatttccaccattctgataagaatcctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6531" stop="8594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6831" g_stop="8294" g_length="1464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1464" r_length="1464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1465" polyA_stop="1479"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E746541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1464</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6831" e_stop="8294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCC</genome_strand>
        <mrna_strand>CCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268648" ref_strand="+" ref_description="SGN-E268648 [cLEM-9-G19]">
      <seq>caaaacacccaagatttccaccattctgataagaatcctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6532" stop="7637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6832" g_stop="7337" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E268648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6832" e_stop="7337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGT</genome_strand>
        <mrna_strand>CAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702896" ref_strand="+" ref_description="SGN-E702896 [FA20AA06]">
      <seq>atttccaccattctgataagaatcctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaagggagagatttgtgacatcaacgggaactgtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6545" stop="8029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6845" g_stop="7729" g_length="885"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E702896" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6845" e_stop="7729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATG</genome_strand>
        <mrna_strand>ATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACC-AAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697179" ref_strand="+" ref_description="SGN-E697179 [FA01AC03]">
      <seq>attctgataagaatcctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggagtcattcgtggtggttntaacaactatatcatcaaaaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6554" stop="7708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6854" g_stop="7408" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E697179" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6854" e_stop="7408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTC-TTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTG</genome_strand>
        <mrna_strand>ATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGAGTCATTCGTGGTGGTTNTAACAACTATATCATCAAAAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268789" ref_strand="+" ref_description="SGN-E268789 [cLEM-4-B17]">
      <seq>tgataagaatcctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6558" stop="7641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6858" g_stop="7341" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E268789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6858" e_stop="7341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCG</genome_strand>
        <mrna_strand>TGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269851" ref_strand="+" ref_description="SGN-E269851 [cLEM-17-O20]">
      <seq>tgataagaatcctcaaaacaaaacccaagctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaagcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgcgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6558" stop="7468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6858" g_stop="7168" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E269851" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6858" e_stop="7168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTG</genome_strand>
        <mrna_strand>TGATAAGAATCCTCAAAACAAAACCCAAGCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAAGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGCGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737140" ref_strand="+" ref_description="SGN-E737140 [LC08CE04]">
      <seq>ctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccatttgtcacaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6569" stop="8035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6869" g_stop="7735" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="867" r_length="867" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E737140" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6869" e_stop="7735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCA-TTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTG</genome_strand>
        <mrna_strand>CTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTTGTCA-CAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739231" ref_strand="+" ref_description="SGN-E739231 [LC16CE02]">
      <seq>ctctaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6574" stop="7985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6869" g_stop="7685" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E739231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6869" e_stop="7685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTC</genome_strand>
        <mrna_strand>CTC-TAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731305" ref_strand="+" ref_description="SGN-E731305 [LA26DA01]">
      <seq>acaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggtcaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6575" stop="7987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6875" g_stop="7687" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E731305" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6875" e_stop="7687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCAC</genome_strand>
        <mrna_strand>ACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGTCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207921" ref_strand="+" ref_description="SGN-E207921 [cLEC-34-B3]">
      <seq>acaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6575" stop="7467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6875" g_stop="7167" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E207921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6875" e_stop="7167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACT</genome_strand>
        <mrna_strand>ACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701299" ref_strand="+" ref_description="SGN-E701299 [FA15CD02]">
      <seq>caaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6576" stop="8030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6876" g_stop="7730" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E701299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6876" e_stop="7730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGC</genome_strand>
        <mrna_strand>CAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358252" ref_strand="+" ref_description="SGN-E358252 [cLHT-28-A16]">
      <seq>aaaacccaatctttatccctcccatttcactctttggagcagccacattcctgagctaaaagaaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgactcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgttcgatgtggtctccgtgatctgcgtgatcgaattgaatctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggcgctaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagaccagtcaagaaagtggccttggttgttgtcaccggtgaccgtggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6577" stop="7761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="7461" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E358252" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="7461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAG-AAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGT</genome_strand>
        <mrna_strand>AAAACCCAATCTTTATCCCTCCCATTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGACTCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTTCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGAATCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGCGCTAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCAGTCAAGAAAGTGGCCTTGGTTGTTGTCACCGGTGACCGTGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287238" ref_strand="+" ref_description="SGN-E287238 [cLES-15-C7]">
      <seq>aaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6577" stop="7738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="7438" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E287238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="7438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTG</genome_strand>
        <mrna_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292423" ref_strand="+" ref_description="SGN-E292423 [cLET-1-B10]">
      <seq>aaaacccaatctttatccctgccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacacaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaaaaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgttccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggagtctttgtggtgggtttaacaactatatcatcaaaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6577" stop="7707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="7407" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E292423" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="7407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCT</genome_strand>
        <mrna_strand>AAAACCCAATCTTTATCCCTGCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACACAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAAAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTTCCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGAGTCTTTGTGGTGGGTTTAACAACTATATCATCAAAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258888" ref_strand="+" ref_description="SGN-E258888 [cLEG-41-G6]">
      <seq>aaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6577" stop="7603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="7303" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E258888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="7303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATG</genome_strand>
        <mrna_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264259" ref_strand="+" ref_description="SGN-E264259 [cLEG-70-F10]">
      <seq>aaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6577" stop="7496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="7196" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E264259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="7196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAA</genome_strand>
        <mrna_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293783" ref_strand="+" ref_description="SGN-E293783 [cLET-37-A6]">
      <seq>aaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6577" stop="7336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="7036" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E293783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="7036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTT</genome_strand>
        <mrna_strand>AAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340722" ref_strand="+" ref_description="SGN-E340722 [cTOF-1-P16]">
      <seq>aaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6578" stop="7898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6878" g_stop="7598" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E340722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6878" e_stop="7598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGA</genome_strand>
        <mrna_strand>AAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202450" ref_strand="+" ref_description="SGN-E202450 [cLEC-6-C8]">
      <seq>aaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6578" stop="7770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6878" g_stop="7470" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E202450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6878" e_stop="7470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAA</genome_strand>
        <mrna_strand>AAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330292" ref_strand="+" ref_description="SGN-E330292 [cTOD-4-J23]">
      <seq>aaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6578" stop="7770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6878" g_stop="7470" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E330292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6878" e_stop="7470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAA</genome_strand>
        <mrna_strand>AAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329410" ref_strand="+" ref_description="SGN-E329410 [cTOD-2-J24]">
      <seq>aaacccaatctttatccctcccacttcactctttggagcggccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaagattagagatttgaaagctcttggccttgattacactatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6578" stop="7756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6878" g_stop="7456" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E329410" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6878" e_stop="7456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTA</genome_strand>
        <mrna_strand>AAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCGGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAAGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284190" ref_strand="+" ref_description="SGN-E284190 [cLER-16-K15]">
      <seq>caatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctctgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggcactttacaacatcaatgagcaggtccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6583" stop="7639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6883" g_stop="7339" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E284190" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6883" e_stop="7339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGG</genome_strand>
        <mrna_strand>CAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTCTGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGCACTTTACAACATCAATGAGCAGGTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702616" ref_strand="+" ref_description="SGN-E702616 [FA19AH06]">
      <seq>aatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6584" stop="8026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6884" g_stop="7726" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E702616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6884" e_stop="7726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTG</genome_strand>
        <mrna_strand>AATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726540" ref_strand="+" ref_description="SGN-E726540 [LA12AD11]">
      <seq>atctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6585" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6885" g_stop="7686" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E726540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6885" e_stop="7686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCA</genome_strand>
        <mrna_strand>ATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358341" ref_strand="+" ref_description="SGN-E358341 [cLHT-28-B1]">
      <seq>ctttatccctcccatttcacgctttggagcagccacattcctgagctaaaagaaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgactcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgttcgatgtggtctccgtgatctgcgtgatcgaattgaatctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcccaagaagctgttgtgggcgctaggcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6587" stop="7539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6887" g_stop="7239" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E358341" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6887" e_stop="7239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAG-AAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTC</genome_strand>
        <mrna_strand>CTTTATCCCTCCCATTTCACGCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGACTCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTTCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGAATCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCCCAAGAAGCTGTTGTGGGCGCTAGGCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347851" ref_strand="+" ref_description="SGN-E347851 [cTOF-26-P8]">
      <seq>tttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcangccttacatccctgtagataaatttcttgaaggaaagcatctgcccactgctaaagatgctcangccattgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6588" stop="7873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6888" g_stop="7573" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E347851" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6888" e_stop="7573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAG-AAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATG</genome_strand>
        <mrna_strand>TTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCANGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAAGCATCTGCCCACTGCTAAAGATGCTCANGCCATTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730245" ref_strand="+" ref_description="SGN-E730245 [LA23CB10]">
      <seq>ctctcacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgctcccattgtcaccaaagggagaaatttgtgacatcaacgggaactgtgttgatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6595" stop="8035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6895" g_stop="7735" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E730245" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6895" e_stop="7735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTG</genome_strand>
        <mrna_strand>CTCTCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTCCCATTGTCACCAAAGGGAGAAATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315575" ref_strand="+" ref_description="SGN-E315575 [cTOA-22-G8]">
      <seq>cccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattaactattatcagtgttggcaaaaagggtaattcttattttctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6597" stop="7935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6897" g_stop="7635" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E315575" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6897" e_stop="7635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTT</genome_strand>
        <mrna_strand>CCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTA-ACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTTCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729601" ref_strand="+" ref_description="SGN-E729601 [LA21CB11]">
      <seq>cccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccacacagatgaccttgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggctttaacaacctatatcatcaaaaaagctgaggccaggattatagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaaggccttacatccctgtaaaataattttcttgaaggaaccaatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6597" stop="7841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6897" g_stop="7541" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E729601" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6897" e_stop="7541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAA-CTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGC-AGGCCTTACATCCCTGT-AGATAAATTTCTTGAAGGAAGCAATCTGCC</genome_strand>
        <mrna_strand>CCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCACACAGATGACCTTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGCTTTAACAACCTATATCATCAAAAAAGCTGAGGCCAGGATTATAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAAGGCCTTACATCCCTGTAAAATAATTTTCTTGAAGGAACCAATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727432" ref_strand="+" ref_description="SGN-E727432 [LA14CG02]">
      <seq>cgacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagaaatttgtgacatcaacgggaactgtgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6600" stop="8030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6898" g_stop="7730" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E727432" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6898" e_stop="7730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGC</genome_strand>
        <mrna_strand>CGACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAAATTTGTGACATCAACGGGAACTGTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726726" ref_strand="+" ref_description="SGN-E726726 [LA12CF02]">
      <seq>cttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6601" stop="8031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6901" g_stop="7731" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="831" r_length="831" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E726726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6901" e_stop="7731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCA</genome_strand>
        <mrna_strand>CTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358218" ref_strand="+" ref_description="SGN-E358218 [cLHT-23-D22]">
      <seq>tttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgactcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgttcgatgtggtctccgtgatctgcgtgatcgaattgaatctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggcgctaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagaccagtcaagaaagtggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6602" stop="7640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6901" g_stop="7341" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E358218" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6901" e_stop="7341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCG</genome_strand>
        <mrna_strand>TTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGACTCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTTCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGAATCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGCGCTAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCAGTCAAGAAAGTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727757" ref_strand="+" ref_description="SGN-E727757 [LA15CF04]">
      <seq>cgcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgaccacaaaggaaaggaaattgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6604" stop="8080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6902" g_stop="7780" g_length="879"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="879" r_length="879" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E727757" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6902" e_stop="7780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAG</genome_strand>
        <mrna_strand>CGCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACCACAAAGGAAAGGAAATTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727613" ref_strand="+" ref_description="SGN-E727613 [LA15AH05]">
      <seq>cgactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccnaagggagagatttgtgacatcaacgggaactgtgttgatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6605" stop="8035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6903" g_stop="7735" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E727613" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6903" e_stop="7735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTG</genome_strand>
        <mrna_strand>CGACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCNAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736496" ref_strand="+" ref_description="SGN-E736496 [LC06AA07]">
      <seq>ctctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6606" stop="8034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6906" g_stop="7734" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E736496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6906" e_stop="7734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCT</genome_strand>
        <mrna_strand>CTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731177" ref_strand="+" ref_description="SGN-E731177 [LA26BE04]">
      <seq>ctctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6606" stop="7884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6906" g_stop="7584" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E731177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6906" e_stop="7584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCA</genome_strand>
        <mrna_strand>CTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346854" ref_strand="+" ref_description="SGN-E346854 [cTOF-32-A19]">
      <seq>ctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacggatgaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggtgtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaagaagcaatctgcccactgctaaagatgctcangccattgctgatgatgttttctcatttttcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6608" stop="7894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6908" g_stop="7594" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E346854" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6908" e_stop="7594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGA</genome_strand>
        <mrna_strand>CTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACGGATGAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGTGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAAGAAGCAATCTGCCCACTGCTAAAGATGCTCANGCCATTGCTGATGATGTTTTCTCATTTTTCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367659" ref_strand="+" ref_description="SGN-E367659 [cLPT-14-D21]">
      <seq>tttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgactcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgttcgatgtggcctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtcggtgctaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggttgtcgtcaccggtgaccgtggtctttgtggtggttttaacaactatatcatcaaaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6609" stop="7707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6909" g_stop="7407" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E367659" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6909" e_stop="7407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCT</genome_strand>
        <mrna_strand>TTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGACTCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTTCGATGTGGCCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTCGGTGCTAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTTGTCGTCACCGGTGACCGTGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282107" ref_strand="+" ref_description="SGN-E282107 [cLES-4-G9]">
      <seq>tttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6609" stop="7646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6909" g_stop="7346" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E282107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6909" e_stop="7346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGT</genome_strand>
        <mrna_strand>TTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286359" ref_strand="+" ref_description="SGN-E286359 [cLES-11-D7]">
      <seq>tggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6611" stop="7766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6911" g_stop="7466" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E286359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6911" e_stop="7466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGG</genome_strand>
        <mrna_strand>TGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295654" ref_strand="+" ref_description="SGN-E295654 [cLET-25-K12]">
      <seq>gagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctntctctgagactttggttgaggtactttacaacatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6613" stop="7575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6913" g_stop="7275" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E295654" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6913" e_stop="7275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAAT</genome_strand>
        <mrna_strand>GAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTNTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727625" ref_strand="+" ref_description="SGN-E727625 [LA15BA06]">
      <seq>gccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttangttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacactgatttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6618" stop="8121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6918" g_stop="7821" g_length="904"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="903" r_length="903" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E727625" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6918" e_stop="7821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCA</genome_strand>
        <mrna_strand>GCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTANGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGAC-ACTGATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725556" ref_strand="+" ref_description="SGN-E725556 [LA04AB08]">
      <seq>gccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggngtctttgtggtggttttaacactatatcatcaaaaagctgaggccaggattagangattgaagctcttggccttgatacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6618" stop="7755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6918" g_stop="7455" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E725556" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6918" e_stop="7455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATT</genome_strand>
        <mrna_strand>GCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGNGTCTTTGTGGTGGTTTTAAC-ACTATATCATC-AAAAAGCTGAGGCCAGGATTAGANGATTG-AAGCTCTTGGCCTTGA-TACACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731279" ref_strand="+" ref_description="SGN-E731279 [LA26CF09]">
      <seq>cacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacggggaactgtgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6620" stop="8030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6920" g_stop="7730" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E731279" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6920" e_stop="7730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAAC-GGGAACTGTGTTGATGC</genome_strand>
        <mrna_strand>CACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGGAACTGTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728346" ref_strand="+" ref_description="SGN-E728346 [LA17CB04]">
      <seq>cacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgatggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6620" stop="8030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6920" g_stop="7730" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E728346" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6920" e_stop="7730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGC</genome_strand>
        <mrna_strand>CACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGATGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211402" ref_strand="+" ref_description="SGN-E211402 [cLEC-67-A4]">
      <seq>cacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcangccattgctgatgatgttttctcatttttcgtgagtgaagaagttgacaaggttgagcttctctacacaaagtttgtgtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6620" stop="7943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6920" g_stop="7643" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E211402" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6920" e_stop="7643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTT</genome_strand>
        <mrna_strand>CACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCANGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAAGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728662" ref_strand="+" ref_description="SGN-E728662 [LA18CB10]">
      <seq>cacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6620" stop="7930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6920" g_stop="7630" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E728662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6920" e_stop="7630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAA</genome_strand>
        <mrna_strand>CACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737115" ref_strand="+" ref_description="SGN-E737115 [LC08CB08]">
      <seq>acattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatngagtctttagggttgacacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacactgatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6621" stop="8120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6921" g_stop="7820" g_length="900"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E737115" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6921" e_stop="7820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTA-GGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTC</genome_strand>
        <mrna_strand>ACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATNGAGTCTTTAGGGTTGAC-ACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGAC-ACTGATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731466" ref_strand="+" ref_description="SGN-E731466 [LA27AH04]">
      <seq>cattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6622" stop="7705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6922" g_stop="7405" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E731466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6922" e_stop="7405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAG</genome_strand>
        <mrna_strand>CATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202310" ref_strand="+" ref_description="SGN-E202310 [cLEC-6-K16]">
      <seq>attcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcaggttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacacaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcgatgagcagctgcagacagatgacattgatgtaccactcaccaaagtaagacctgtcacgaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggtgttaacaactatatcatcaaaaaagctgaggccaggattagagattttaaagctcttggccttgattacactatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6623" stop="7756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6923" g_stop="7456" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E202310" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6923" e_stop="7456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTA</genome_strand>
        <mrna_strand>ATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGGTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACACAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCGATGAGCAGCTGCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCACGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTGTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTTAAAGCTCTTGGCCTTGATTACACTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370438" ref_strand="+" ref_description="SGN-E370438 [TUS-29-I9]">
      <seq>tgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcattaaaaaagctgaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6628" stop="7713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6928" g_stop="7413" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E370438" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6928" e_stop="7413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCC</genome_strand>
        <mrna_strand>TGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATTAAAAAAGCTGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281640" ref_strand="+" ref_description="SGN-E281640 [cLER-14-B3]">
      <seq>tgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6628" stop="7673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6928" g_stop="7373" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E281640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6928" e_stop="7373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTG</genome_strand>
        <mrna_strand>TGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280604" ref_strand="+" ref_description="SGN-E280604 [cLER-1-J1]">
      <seq>tgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6628" stop="7635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6928" g_stop="7335" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E280604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6928" e_stop="7335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAA</genome_strand>
        <mrna_strand>TGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367211" ref_strand="+" ref_description="SGN-E367211 [cLPT-5-I21]">
      <seq>taaaaaaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgactcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaagcccttcaaacccctcaagatcatcatcagttatccctgttcgatgtggcctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtcggtgctaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggttgtcgtcaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6633" stop="7658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6933" g_stop="7358" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E367211" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6933" e_stop="7358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGG</genome_strand>
        <mrna_strand>TAAAAAAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGACTCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAAGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTTCGATGTGGCCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTCGGTGCTAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTTGTCGTCACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730750" ref_strand="+" ref_description="SGN-E730750 [LA25AC12]">
      <seq>caatgaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6635" stop="8076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6934" g_stop="7776" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E730750" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6934" e_stop="7776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTG</genome_strand>
        <mrna_strand>CAATGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725983" ref_strand="+" ref_description="SGN-E725983 [LA08DG04]">
      <seq>aaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6634" stop="7543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6934" g_stop="7243" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E725983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6934" e_stop="7243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTG</genome_strand>
        <mrna_strand>AAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729580" ref_strand="+" ref_description="SGN-E729580 [LA21BH12]">
      <seq>gaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacggggaactgtgttgatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6638" stop="8032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6938" g_stop="7732" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E729580" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6938" e_stop="7732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAAC-GGGAACTGTGTTGATGCAG</genome_strand>
        <mrna_strand>GAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGGAACTGTGTTGATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258362" ref_strand="+" ref_description="SGN-E258362 [cLEG-49-N8]">
      <seq>gaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6638" stop="7771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6938" g_stop="7471" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E258362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6938" e_stop="7471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAA</genome_strand>
        <mrna_strand>GAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285946" ref_strand="+" ref_description="SGN-E285946 [cLES-13-M10]">
      <seq>aaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6639" stop="7413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6939" g_stop="7113" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E285946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6939" e_stop="7113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGT</genome_strand>
        <mrna_strand>AAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281172" ref_strand="+" ref_description="SGN-E281172 [cLER-7-F18]">
      <seq>aaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6642" stop="7642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6942" g_stop="7342" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E281172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6942" e_stop="7342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGT</genome_strand>
        <mrna_strand>AAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278034" ref_strand="+" ref_description="SGN-E278034 [cLER-4-P23]">
      <seq>aacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6643" stop="7642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6943" g_stop="7342" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E278034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6943" e_stop="7342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGT</genome_strand>
        <mrna_strand>AACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735787" ref_strand="+" ref_description="SGN-E735787 [LC03AA08]">
      <seq>cgttcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcacgccattgctgatgatgttttctcatttttcgtgagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6649" stop="7898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6945" g_stop="7598" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E735787" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6945" e_stop="7598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGA</genome_strand>
        <mrna_strand>CGT-TCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCACGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736317" ref_strand="+" ref_description="SGN-E736317 [LC05AG12]">
      <seq>cggtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6648" stop="8073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6946" g_stop="7773" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E736317" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6946" e_stop="7773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAA</genome_strand>
        <mrna_strand>CGGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736619" ref_strand="+" ref_description="SGN-E736619 [LC06BH09]">
      <seq>gtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttagggtgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6648" stop="8134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6948" g_stop="7834" g_length="887"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="887" r_length="887" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E736619" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6948" e_stop="7834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAAT</genome_strand>
        <mrna_strand>GTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGGTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739253" ref_strand="+" ref_description="SGN-E739253 [LC16CG08]">
      <seq>gtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaagggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6648" stop="8132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6948" g_stop="7832" g_length="885"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="886" r_length="886" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E739253" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6948" e_stop="7832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAA-GGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCA</genome_strand>
        <mrna_strand>GTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740096" ref_strand="+" ref_description="SGN-E740096 [LC20AD02]">
      <seq>gttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaaatcttgcattcgagcaggaccctgttcagattcttgatgccttgctgccactttactttgaacagtcaatcctgagggcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6653" stop="8208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6953" g_stop="7908" g_length="956"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="957" r_length="957" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E740096" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6953" e_stop="7908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGG-AAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGC-AATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTAC-TTGAACAGTCAAATCCTGAGGGCATTG</genome_strand>
        <mrna_strand>GTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAAATCTTGC-ATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTTGAACAGTC-AATCCTGAGGGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731462" ref_strand="+" ref_description="SGN-E731462 [LA27AG11]">
      <seq>atttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6659" stop="8029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6959" g_stop="7729" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E731462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6959" e_stop="7729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATG</genome_strand>
        <mrna_strand>ATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246052" ref_strand="+" ref_description="SGN-E246052 [cLEF-54-K8]">
      <seq>tctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6688" stop="7890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6988" g_stop="7590" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E246052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6988" e_stop="7590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTC</genome_strand>
        <mrna_strand>TCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725753" ref_strand="+" ref_description="SGN-E725753 [LA05CC12]">
      <seq>atcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgancaggttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6786" stop="7919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7086" g_stop="7619" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E725753" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7086" e_stop="7619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCT</genome_strand>
        <mrna_strand>ATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGANCAGGTTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727719" ref_strand="+" ref_description="SGN-E727719 [LA15CB10]">
      <seq>atcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattacccagtgagcttgcttctaggatgagtgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6789" stop="8253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7089" g_stop="7953" g_length="865"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="865" r_length="865" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E727719" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7089" e_stop="7953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATG</genome_strand>
        <mrna_strand>ATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTACCCAGTGAGCTTGCTTCTAGGATGAGTGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359344" ref_strand="+" ref_description="SGN-E359344 [cLHT-31-B12]">
      <seq>atccctgttcgatgtggtctccgtgatctgcgtgatcgaattgaatctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggcgctaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagaccagtcaagaaagtggccttggttgttgtcaccggtgaccgtggtctttgtggtggttttaacaactatatcatcaaaaaagctgacgccaggattagagatttgaaagctcttggccttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6796" stop="7748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7096" g_stop="7448" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E359344" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7096" e_stop="7448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTA</genome_strand>
        <mrna_strand>ATCCCTGTTCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGAATCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGCGCTAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCAGTCAAGAAAGTGGCCTTGGTTGTTGTCACCGGTGACCGTGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGACGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285558" ref_strand="+" ref_description="SGN-E285558 [cLES-10-L24]">
      <seq>gatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6806" stop="7900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7106" g_stop="7600" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E285558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7106" e_stop="7600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAG</genome_strand>
        <mrna_strand>GATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702441" ref_strand="+" ref_description="SGN-E702441 [FA18CH09]">
      <seq>gaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcaccgccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgcctgggtttagcatatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6868" stop="8389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7168" g_stop="8089" g_length="922"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="922" r_length="922" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E702441" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7168" e_stop="8089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCA-CACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCC</genome_strand>
        <mrna_strand>GAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACCGCCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTGGGTTT-AGCATATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730250" ref_strand="+" ref_description="SGN-E730250 [LA23CC03]">
      <seq>aacattttgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggaagaatattgaagattgttgctggagcagatgccttggtttaagcatatcccctgccaatgtgcttctctgtaggtacaataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6918" stop="8422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7211" g_stop="8122" g_length="912"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="912" r_length="912" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E730250" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7211" e_stop="8122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGA</genome_strand>
        <mrna_strand>AACATTTTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAAGAATATTGAAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCCAATGTGCTTCTCTGTAGGTACAATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291379" ref_strand="+" ref_description="SGN-E291379 [cLET-2-B2]">
      <seq>tacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6964" stop="7732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7264" g_stop="7432" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E291379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7264" e_stop="7432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAG</genome_strand>
        <mrna_strand>TACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325662" ref_strand="+" ref_description="SGN-E325662 [cTOC-15-O19]">
      <seq>tggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggnaattgttgctggagcagatgccttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7043" stop="8375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7343" g_stop="8075" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E325662" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7343" e_stop="8075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGT</genome_strand>
        <mrna_strand>TGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGNAATTGTTGCTGGAGCAGATGCCTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285833" ref_strand="+" ref_description="SGN-E285833 [cLES-5-B2]">
      <seq>atcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7096" stop="8049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7396" g_stop="7749" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E285833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7396" e_stop="7749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTT</genome_strand>
        <mrna_strand>ATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284414" ref_strand="+" ref_description="SGN-E284414 [cLER-16-B11]">
      <seq>taattcttatttcctccgcaggccttacattcctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7176" stop="8374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7476" g_stop="8074" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E284414" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7476" e_stop="8074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGG</genome_strand>
        <mrna_strand>TAATTCTTATTTCCTCCGCAGGCCTTACATTCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284415" ref_strand="+" ref_description="SGN-E284415 [cLER-16-B13]">
      <seq>taattcttatttcctccgtaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcacgaccctgttcagatttttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7176" stop="8349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7476" g_stop="8049" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E284415" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7476" e_stop="8049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAG</genome_strand>
        <mrna_strand>TAATTCTTATTTCCTCCGTAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCACGACCCTGTTCAGATTTTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284192" ref_strand="+" ref_description="SGN-E284192 [cLER-16-M11]">
      <seq>taattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcacgagtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7176" stop="8219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7476" g_stop="7919" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E284192" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7476" e_stop="7919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATT</genome_strand>
        <mrna_strand>TAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCACGAGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265902" ref_strand="+" ref_description="SGN-E265902 [cLEI-11-J14]">
      <seq>cctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7207" stop="8321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7507" g_stop="8021" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E265902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7507" e_stop="8021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCA</genome_strand>
        <mrna_strand>CCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347309" ref_strand="+" ref_description="SGN-E347309 [cTOF-33-I17]">
      <seq>tttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7219" stop="8114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7519" g_stop="7814" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E347309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7519" e_stop="7814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGA</genome_strand>
        <mrna_strand>TTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346271" ref_strand="+" ref_description="SGN-E346271 [cTOF-23-F11]">
      <seq>gcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatatttttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7239" stop="8593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7539" g_stop="8303" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E346271" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7539" e_stop="8303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATA-TTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAG</genome_strand>
        <mrna_strand>GCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733136" ref_strand="+" ref_description="SGN-E733136 [LB04AC08]">
      <seq>cccctctgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7240" stop="8576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7539" g_stop="8276" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="754"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E733136" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7539" e_stop="8276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAA</genome_strand>
        <mrna_strand>CCCCTCTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346312" ref_strand="+" ref_description="SGN-E346312 [cTOF-23-F8]">
      <seq>gcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgcctttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7239" stop="8477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7539" g_stop="8177" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E346312" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7539" e_stop="8177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCC-TTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAA</genome_strand>
        <mrna_strand>GCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268680" ref_strand="+" ref_description="SGN-E268680 [cLEM-9-E21]">
      <seq>actgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgttcaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7243" stop="8363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7543" g_stop="8063" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E268680" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7543" e_stop="8063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGC</genome_strand>
        <mrna_strand>ACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTTCAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692536" ref_strand="+" ref_description="SGN-E692536 [LH_Ea08P14]">
      <seq>ccggttcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgactgtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcgtctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctaaaaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7357" stop="8596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7657" g_stop="8297" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="659"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E692536" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7657" e_stop="8297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAG-TCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTC</genome_strand>
        <mrna_strand>CCGGTTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACTGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCGTCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696376" ref_strand="+" ref_description="SGN-E696376 [LH_Ea08P14](-)">
      <seq>gtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgactgtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttttaggatgagtgccatgagcagtgcaacagataatgcgtctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttttctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtaaggcaatttttttctgctatatttgtaaaacatgaattatagagagcctgaaatcttcaatccctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7360" stop="8596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7660" g_stop="8297" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="657"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E696376" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7660" e_stop="8297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTC</genome_strand>
        <mrna_strand>GTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACTGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTTTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCGTCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTTTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTAAGGCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATAGAGAGCCTGAAATCTTCAATCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732810" ref_strand="+" ref_description="SGN-E732810 [LB03AH02]">
      <seq>cgggtagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7392" stop="8576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7690" g_stop="8276" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="603"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E732810" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7690" e_stop="8276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAA</genome_strand>
        <mrna_strand>CGGGTAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732863" ref_strand="+" ref_description="SGN-E732863 [LB03BD07]">
      <seq>gttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7443" stop="8596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7743" g_stop="8297" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="568"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E732863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7743" e_stop="8297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTC</genome_strand>
        <mrna_strand>GTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284204" ref_strand="-" ref_description="SGN-E284204 [cLER-16-A6]">
      <seq>actgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttttaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7510" stop="8576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7810" g_stop="8276" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="484"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E284204" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284204" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7810" e_stop="8276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAA</genome_strand>
        <mrna_strand>ACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTTTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728758" ref_strand="+" ref_description="SGN-E728758 [LA18DD11]">
      <seq>tgtcattcgagcaggaccctgtnagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggctgggcgggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttgatttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctcgtatagcttttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7529" stop="8611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7829" g_stop="8321" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E728758" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7829" e_stop="8321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTACTTCATAGTG</genome_strand>
        <mrna_strand>TGTCATTCGAGCAGGACCCTG-TNAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCTGGGCGGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGATTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733057" ref_strand="+" ref_description="SGN-E733057 [LB03DD11]">
      <seq>tgtaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctcgtatagcttttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7529" stop="8611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7829" g_stop="8321" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E733057" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7829" e_stop="8321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTACTTCATAGTG</genome_strand>
        <mrna_strand>TGTAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728450" ref_strand="+" ref_description="SGN-E728450 [LA17DD11]">
      <seq>tgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctcgtatagcttttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7529" stop="8611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7829" g_stop="8321" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E728450" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7829" e_stop="8321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTACTTCATAGTG</genome_strand>
        <mrna_strand>TGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344934" ref_strand="+" ref_description="SGN-E344934 [cTOF-21-N14]">
      <seq>ttcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtacgtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctcgtatagcttttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7534" stop="8611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7834" g_stop="8321" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E344934" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7834" e_stop="8321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTACTTCATAGTG</genome_strand>
        <mrna_strand>TTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTACGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344760" ref_strand="+" ref_description="SGN-E344760 [cTOF-21-L13]">
      <seq>ttcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctcgtatagcttttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7534" stop="8611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7834" g_stop="8321" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E344760" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7834" e_stop="8321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTACTTCATAGTG</genome_strand>
        <mrna_strand>TTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238785" ref_strand="+" ref_description="SGN-E238785 [cLEL-9-E10](-)">
      <seq>acagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcaaatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7586" stop="8576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7886" g_stop="8276" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="407"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E238785" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7886" e_stop="8276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAA</genome_strand>
        <mrna_strand>ACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAAATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232211" ref_strand="+" ref_description="SGN-E232211 [cLEL-5-B14](-)">
      <seq>agtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcagcagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaaatgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7588" stop="59239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7888" g_stop="8269" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E232211" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7888" e_stop="8269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATT</genome_strand>
        <mrna_strand>AGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAGCAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAAATGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318477" ref_strand="+" ref_description="SGN-E318477 [cTOB-10-L24]">
      <seq>tcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctcgtatagcttttctaanaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7615" stop="8611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7915" g_stop="8319" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E318477" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7915" e_stop="8319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTACTTCATAG</genome_strand>
        <mrna_strand>TCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTAANAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282861" ref_strand="-" ref_description="SGN-E282861 [cLER-15-H21]">
      <seq>ttagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7618" stop="8596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7918" g_stop="8297" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="398"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E282861" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7918" e_stop="8297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTC</genome_strand>
        <mrna_strand>TTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238846" ref_strand="+" ref_description="SGN-E238846 [cLEL-9-E10](-)">
      <seq>tgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctcccatatttgtaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7647" stop="8565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7947" g_stop="8265" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E238846" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7947" e_stop="8265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATG</genome_strand>
        <mrna_strand>TGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTCCCATATTTGTAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712016" ref_strand="+" ref_description="SGN-E712016 [FB03CF03]">
      <seq>catacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="7710" stop="8591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8010" g_stop="8290" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="282" polyA_stop="297"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E712016" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8010" e_stop="8290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCA</genome_strand>
        <mrna_strand>CATACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349765" ref_strand="+" ref_description="SGN-E349765 [cTOS-3-O18]">
      <seq>aaatacagaagaagaaaaaaatgaaatcaaagatgagaagcagaaacttgagatcttcaatgccgtcgtattatacatatctgaagccaggagcgttagcccaaatcaggaattccaaaatcactgctaaatcaaaagtactgaacaatcctaaaactctaattgtgatgaaccaccaaacatccgattcaggaatcggagtttcacagccagcaccaatcatggagagcgttccttgctttaatttgaagatcaagagcaaccgcccttgctgccttcagaggaagaagctcagtgcagttgcacccattttctatgacccgtctctcgttaccatataatccgctactacagcaaagggtttttcttaaattgaactttttttcttatattacctgttttatttttatttgtgggtaaagtttatgtggcttctgatgaatgtaagtaatgtatttaccttgaattacgacgaagaatagatttggatttggatttgttttttttttaaaaaaaaanannnnnnnnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="11124" stop="10004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10824" g_stop="10307" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="544"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E349765" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10824" e_stop="10307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAATAGATTTGGATTTGGATTTGTTTTTTTTTTAGAACATAA</genome_strand>
        <mrna_strand>AAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAATAGATTTGGATTTGGATTTGTTTTTTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349824" ref_strand="+" ref_description="SGN-E349824 [cTOS-3-O19]">
      <seq>aaatacagaagaagaaaaaaatgaaatcaaagatgagaagcagaaacttgagatcttcaatgccgtcgtattatacatatctgaagccaggagcgttagcccaaatcaggaattccaaaatcactgctaaatcaaaagtactgaacaatcctaaaactctaattgtgatgaaccaccaaacatccgattcaggaatcggagtttcacagccagcaccaatcatggagagcgttccttgctttaatttgaagatcaagagcaaccgcccttgctgccttcagaggaagaagctcagtgcagttgcacccattttctatgacccgtctctcgttaccatataatccgctactacagcaaagggtttttcttaaattgaactttttttcttatattacctggtttatttttatttgtgggtaaagtttatgtggcttctgatgaatgtaagtaatgtatttaccttgaattacgacgaagaaatagattggatttggaatttgttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="11124" stop="10017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10824" g_stop="10317" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E349824" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10824" e_stop="10317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAG-AATAGATTTGGATTTGG-ATTTGTTTTTTTTT</genome_strand>
        <mrna_strand>AAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGGTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAAATAGA-TTGGATTTGGAATTTGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351911" ref_strand="+" ref_description="SGN-E351911 [cTOS-8-N3]">
      <seq>aaatacagaagaagaaaaaaatgaaatcaaagatgagaagcagaaacttgagatcttcaatgccgtcgtattatacatatctgaagccaggagcgttagcccaaatcaggaattccaaaatcactgctaaatcaaaagtactgaacaatcctaaaactctaattgtgatgaaccaccaaacatccgattcaggaatcggagtttcacagccagcaccaatcatggagagcgttccttgctttaatttgaagatcaagagcaaccgcccttgctgccttcagaggaagaagctcagtgcagttgcacccattttctatgacccgtctctcgttaccatataatccgctactacagcaaagggtttttcttaaattgaactttttttcttatattacctgttttatttttatttgtgggtaaagtttatgtggcttctgatgaatgtaagtaatgtatttaccttgaattacgacgaagaatagatttggatttggatttgtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="11124" stop="10018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10824" g_stop="10318" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E351911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10824" e_stop="10318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAATAGATTTGGATTTGGATTTGTTTTTTTT</genome_strand>
        <mrna_strand>AAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAATAGATTTGGATTTGGATTTGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351739" ref_strand="+" ref_description="SGN-E351739 [cTOS-8-N15]">
      <seq>ctatgaaatcctccatgagaactagaacttccagatctgcaaccccatcatttcacacattcttgaaaccaggtgcacttgcccagcttagatactccaaaatctcggctaaatcaaggttgaaaaatgctcaatcttatcagcacatacccctttcggtggtaccttcatcccttcctttaccaaccatggaaagccttccctgtttcaattcatcgatccggattcgccagcctcggtttatccagagaaagaagctcagcgccgttgcgcccatttttactgaatccaattcttgatccttcagttgggtgagacgcctccagtttcaaccccggtctgctgttgatcttattggggtttcagattagtaagttatagtgaaaaaatatacataaaaaaaagtgtatctttgttagatcgggagttctttctccccttcaaaaattttaatttggttattttcttggggcctagtattgatgtcggtaagtggggcgaagatcgtttgcagtacattctcttttcatttcaacaaacaaaagatgtagaaatatacagttcatatgaataaagagatctacataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="14408" stop="13222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14108" g_stop="13522" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="599"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E351739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14108" e_stop="13522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGAAATCCTCCATGAGAACTAGAACTTCCAGATCTGCAACCCCATCATTTCACACATTCTTGAAACCAGGTGCACTTGCCCAGCTTAGATACTCCAAAATCTCGGCTAAATCAAGGTTGAAAAATGCTCAATCTTATCAGCACATACCCCTTTCGGTGGTACCTTCATCCCTTCCTTTACCAACCATGGAAAGCCTTCCCTGTTTCAATTCATCGATCCGGATTCGCCAGCCTCGGTTTATCCAGAGAAAGAAGCTCAGCGCCGTTGCGCCCATTTTTACTGAATCCAATTCTTGATCCTTCAGTTGGGTGAGACGCCTCCAGTTTCAACCCCGGTCTGCTGTTGATCTTATTGGGGTTTCAGATTAGTAAGTTATAGTGAAAAAATATACATAAAAAAAAGTGTATCTTTGTTAGATCGGGAGTTCTTTCTCCCCTTCAAAAATTTTAATTTGGTTATTTTCTTGGGGCCTAGTATTGATGTCGGTAAGTGGGGCGAAGATCGTTTGCAGTACATTCTCTTTTCATTTCAACAAACAAAAGATGTAGAAATATACAGTTCATATGAATAAAGAGATCTACATA</genome_strand>
        <mrna_strand>CTATGAAATCCTCCATGAGAACTAGAACTTCCAGATCTGCAACCCCATCATTTCACACATTCTTGAAACCAGGTGCACTTGCCCAGCTTAGATACTCCAAAATCTCGGCTAAATCAAGGTTGAAAAATGCTCAATCTTATCAGCACATACCCCTTTCGGTGGTACCTTCATCCCTTCCTTTACCAACCATGGAAAGCCTTCCCTGTTTCAATTCATCGATCCGGATTCGCCAGCCTCGGTTTATCCAGAGAAAGAAGCTCAGCGCCGTTGCGCCCATTTTTACTGAATCCAATTCTTGATCCTTCAGTTGGGTGAGACGCCTCCAGTTTCAACCCCGGTCTGCTGTTGATCTTATTGGGGTTTCAGATTAGTAAGTTATAGTGAAAAAATATACATAAAAAAAAGTGTATCTTTGTTAGATCGGGAGTTCTTTCTCCCCTTCAAAAATTTTAATTTGGTTATTTTCTTGGGGCCTAGTATTGATGTCGGTAAGTGGGGCGAAGATCGTTTGCAGTACATTCTCTTTTCATTTCAACAAACAAAAGATGTAGAAATATACAGTTCATATGAATAAAGAGATCTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738435" ref_strand="+" ref_description="SGN-E738435 [LC13CE12]">
      <seq>ctgtaggagaagagagatacttcacatgggatgttgtatttgattctgtggtgaacaagagttttataaagaacattcctttttctttattgcttggttcttgggtgggtcagccatggatgttccattgccactgcatagaccattgagttgcacaagtgtctccaatgcaataacccacctcaagatcaaaccttttcttgggtttgtttctcatggaaccacaagtctatcagtacaatcttcttcatggaggagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="17203" stop="18489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17502" g_stop="17742" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18169" g_stop="18189" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="262" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E738435" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17502" e_stop="17742"/>
          <exon e_start="18169" e_stop="18189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAAGTAAATTTGTCTTCTAATCTTCTCACTGAAAACTGTAGTGTGTGTTGTATCCATTTGCACTAACTTGCGGACACATGTAGTAATTATATTAGCAGTTTTCTTGATTTTGAATTCACCCATGTTTCATACTCCCCAATTTCGATTATAATTCTTGCATATATGGAGTAATTTGAGCTCAAAATGCAATCTTGATTGACATTTTCTTATGGGTATTGGAGCTGCGCATTTTGTGTTTACTTGACATCATCAGTATTTGCATATTTGTTGATTCTTGGTGTATGTTAGTGGTCATGGTTCCAGTTAGTTAACTTAAGGTAATTGTTCTTCAGAGTTATTGATGTTATTGGTATGCCAAGTTTATGGTTTCCACCCTTAAAGCAATTTCGATTGTTGATAGTTCTCTTATACCTAATGCTACTTTTGCAGTCTTCTTCATGGAGGAGGGAT</genome_strand>
        <mrna_strand>CTGTAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCATGGAGGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739654" ref_strand="+" ref_description="SGN-E739654 [LC18BD01]">
      <seq>cgatggagaagagagatacttcacatgggatgttgtatttgattctgtggtgaacaagagttttataaagaacattcctttttctttattgcttggttcttgggtgggtcagccatggatgttccattgccactgcatagaccattgagttgcacaagtgtctccaatgcaataacccacctcaagatcaaaccttttcttgggtttgtttctcatggaaccacaagtctatcagtacaatcttcttcatggaggagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="17204" stop="18489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17503" g_stop="17742" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18169" g_stop="18189" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="261" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E739654" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17503" e_stop="17742"/>
          <exon e_start="18169" e_stop="18189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAAGTAAATTTGTCTTCTAATCTTCTCACTGAAAACTGTAGTGTGTGTTGTATCCATTTGCACTAACTTGCGGACACATGTAGTAATTATATTAGCAGTTTTCTTGATTTTGAATTCACCCATGTTTCATACTCCCCAATTTCGATTATAATTCTTGCATATATGGAGTAATTTGAGCTCAAAATGCAATCTTGATTGACATTTTCTTATGGGTATTGGAGCTGCGCATTTTGTGTTTACTTGACATCATCAGTATTTGCATATTTGTTGATTCTTGGTGTATGTTAGTGGTCATGGTTCCAGTTAGTTAACTTAAGGTAATTGTTCTTCAGAGTTATTGATGTTATTGGTATGCCAAGTTTATGGTTTCCACCCTTAAAGCAATTTCGATTGTTGATAGTTCTCTTATACCTAATGCTACTTTTGCAGTCTTCTTCATGGAGGAGGGAT</genome_strand>
        <mrna_strand>CGATGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCATGGAGGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735979" ref_strand="+" ref_description="SGN-E735979 [LC03DF08]">
      <seq>tgaaggagaagagagatacttcacatgggatgttgtatttgattctgtggtgaacaagagttttataaagaacattcctttttctttattgcttggttcttgggtgggtcagccatggatgttccattgccactgcatagaccattgagttgcacaagtgtctccaatgcaataacccacctcaagatcaaaccttttcttgggtttgtttctcatggaaccacaagtctatcagtacaatcttcttcatggaggagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="17203" stop="18489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17503" g_stop="17742" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18169" g_stop="18189" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="261" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E735979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17503" e_stop="17742"/>
          <exon e_start="18169" e_stop="18189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAAGTAAATTTGTCTTCTAATCTTCTCACTGAAAACTGTAGTGTGTGTTGTATCCATTTGCACTAACTTGCGGACACATGTAGTAATTATATTAGCAGTTTTCTTGATTTTGAATTCACCCATGTTTCATACTCCCCAATTTCGATTATAATTCTTGCATATATGGAGTAATTTGAGCTCAAAATGCAATCTTGATTGACATTTTCTTATGGGTATTGGAGCTGCGCATTTTGTGTTTACTTGACATCATCAGTATTTGCATATTTGTTGATTCTTGGTGTATGTTAGTGGTCATGGTTCCAGTTAGTTAACTTAAGGTAATTGTTCTTCAGAGTTATTGATGTTATTGGTATGCCAAGTTTATGGTTTCCACCCTTAAAGCAATTTCGATTGTTGATAGTTCTCTTATACCTAATGCTACTTTTGCAGTCTTCTTCATGGAGGAGGGAT</genome_strand>
        <mrna_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCATGGAGGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736648" ref_strand="+" ref_description="SGN-E736648 [LC06CD10]">
      <seq>tgaaggagaagagagatacttcacatgggatgttgtatttgattctgtggtgaacaagagttttataaagaacattcctttttctttattgcttggttcttgggtgggtcagccatggatgttccattgccactgcatagaccattgagttgcacaagtgtctccaatgcaataacccacctcaagatcaaaccttttcttgggtttgtttctcatggaaccacaagtctatcagtacaatcttcttcatggaggagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="17203" stop="18489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17503" g_stop="17742" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18169" g_stop="18189" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="261" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E736648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17503" e_stop="17742"/>
          <exon e_start="18169" e_stop="18189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAAGTAAATTTGTCTTCTAATCTTCTCACTGAAAACTGTAGTGTGTGTTGTATCCATTTGCACTAACTTGCGGACACATGTAGTAATTATATTAGCAGTTTTCTTGATTTTGAATTCACCCATGTTTCATACTCCCCAATTTCGATTATAATTCTTGCATATATGGAGTAATTTGAGCTCAAAATGCAATCTTGATTGACATTTTCTTATGGGTATTGGAGCTGCGCATTTTGTGTTTACTTGACATCATCAGTATTTGCATATTTGTTGATTCTTGGTGTATGTTAGTGGTCATGGTTCCAGTTAGTTAACTTAAGGTAATTGTTCTTCAGAGTTATTGATGTTATTGGTATGCCAAGTTTATGGTTTCCACCCTTAAAGCAATTTCGATTGTTGATAGTTCTCTTATACCTAATGCTACTTTTGCAGTCTTCTTCATGGAGGAGGGAT</genome_strand>
        <mrna_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCATGGAGGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737531" ref_strand="+" ref_description="SGN-E737531 [LC10AH11]">
      <seq>tgaaggagaagagagatacttcacatgggatgttgtatttgattctgtggtgaacaagagttttataaagaacattcctttttctttattgcttggttcttgggtgggtcagccatggatgttccattgccactgcatagaccattgagttgcacaagtgtctccaatgcaataacccacctcaagatcaaaccttttcttgggtttgtttctcatggaaccacaagtctatcagtacaatcttcttcatggaggagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="17203" stop="18489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17503" g_stop="17742" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18169" g_stop="18189" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="261" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E737531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17503" e_stop="17742"/>
          <exon e_start="18169" e_stop="18189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAAGTAAATTTGTCTTCTAATCTTCTCACTGAAAACTGTAGTGTGTGTTGTATCCATTTGCACTAACTTGCGGACACATGTAGTAATTATATTAGCAGTTTTCTTGATTTTGAATTCACCCATGTTTCATACTCCCCAATTTCGATTATAATTCTTGCATATATGGAGTAATTTGAGCTCAAAATGCAATCTTGATTGACATTTTCTTATGGGTATTGGAGCTGCGCATTTTGTGTTTACTTGACATCATCAGTATTTGCATATTTGTTGATTCTTGGTGTATGTTAGTGGTCATGGTTCCAGTTAGTTAACTTAAGGTAATTGTTCTTCAGAGTTATTGATGTTATTGGTATGCCAAGTTTATGGTTTCCACCCTTAAAGCAATTTCGATTGTTGATAGTTCTCTTATACCTAATGCTACTTTTGCAGTCTTCTTCATGGAGGAGGGAT</genome_strand>
        <mrna_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCATGGAGGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740591" ref_strand="+" ref_description="SGN-E740591 [LC22AD12]">
      <seq>tgaaggagaagagagatacttcacatgggatgttgtatttgattctgtggtgaacaagagttttataaagaacattcctttttctttattgcttggttcttgggtgggtcagccatggatgttccattgccactgcatagaccattgagttgcacaagtgtctccaatgcaataacccacctcaagatcaaaccttttcttgggtttgtttctcatggaaccacaagtctatcagtacaatcttcttcatggaggagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="17203" stop="18489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17503" g_stop="17742" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18169" g_stop="18189" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="261" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E740591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17503" e_stop="17742"/>
          <exon e_start="18169" e_stop="18189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAAGTAAATTTGTCTTCTAATCTTCTCACTGAAAACTGTAGTGTGTGTTGTATCCATTTGCACTAACTTGCGGACACATGTAGTAATTATATTAGCAGTTTTCTTGATTTTGAATTCACCCATGTTTCATACTCCCCAATTTCGATTATAATTCTTGCATATATGGAGTAATTTGAGCTCAAAATGCAATCTTGATTGACATTTTCTTATGGGTATTGGAGCTGCGCATTTTGTGTTTACTTGACATCATCAGTATTTGCATATTTGTTGATTCTTGGTGTATGTTAGTGGTCATGGTTCCAGTTAGTTAACTTAAGGTAATTGTTCTTCAGAGTTATTGATGTTATTGGTATGCCAAGTTTATGGTTTCCACCCTTAAAGCAATTTCGATTGTTGATAGTTCTCTTATACCTAATGCTACTTTTGCAGTCTTCTTCATGGAGGAGGGAT</genome_strand>
        <mrna_strand>TGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCATGGAGGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738210" ref_strand="+" ref_description="SGN-E738210 [LC12DB07]">
      <seq>gataaacggagagagcaggagaaacttgctaaagaacaagctgaaagagagagactagcagaagaacaaagacgaatagaagcagagaaagctgaaattgaagctgacagagcacaaccaaaggacgagactgcaaagaaaaagaaagtattgcaagaattgatggcaaaggccacaaagactcgtgatatcacctggtacatagagccaagtgaatttaaatgcgaggacaaggtcaggttatactataacaaaagttcaggtccactatcccatgctaaggacctgtggatccacggaggatataacaattggaaggatggtttgtctattgtcaaaaagcttgttaaatctgagagaatagatggtgattggtggtatacagaggttgttattcctgatcaggcacttgtcttggattgggtttttgctgatggtccacccaagcatgccattgcttatgataacaatcaccgccaagacttccatgccattgtccccaagcagattccggaggaattatattgggttgaggaagaacatcagatctttaagaaacttcaggaggagagaaggcttagagaagccgctatgcgtgctaaggctgaaaaaacagcacttctgaaagctgaaacaaaggaaagaactatgaaatcatttttactatctcagaagcatgtagtatatactgagcctcttgatatccaagctggaagcagcgtcacagtttactataatcccgccaatacagtacttagtggtaaacctgaaaatttggttcagaggttcatttaatcgctggacacacccgcctaggtcccttggccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="19171" stop="20941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19471" g_stop="19858" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19859" i_stop="20002" i_length="144">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20003" g_stop="20217" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="603" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20218" i_stop="20418" i_length="201">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20419" g_stop="20641" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="829" r_length="226" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E738210" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19471" e_stop="19858"/>
          <exon e_start="20003" e_stop="20217"/>
          <exon e_start="20419" e_stop="20641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACGGAGAGAGCAGGAGAAACTTGCTAAAGAACAAGCTGAAAGAGAGAGACTAGCAGAAGAACAAAGACGAATAGAAGCAGAGAAAGCTGAAATTGAAGCTGACAGAGCACAAGCAAAGGACGAGACTGCAAAGAAAAAGAAAGTATTGCAAGAATTGATGGCAAAGGCCACAAAGACTCGTGATATCACCTGGTACATAGAGCCAAGTGAATTTAAATGCGAGGACAAGGTCAGGTTATACTATAACAAAAGTTCAGGTCCACTATCCCATGCTAAGGACCTGTGGATCCACGGAGGATATAACAATTGGAAGGATGGTTTGTCTATTGTCAAAAAGCTTGTTAAATCTGAGAGAATAGATGGTGATTGGTGGTATACAGAGGGTAAGTGGGGATTTTATTATTATAAGTACTTGCACTTCTTTTAGTTAGTGCTTGCATGAGCTTCCACAATTATACTTTGTCTGTCTCCTTTTATTTCTTCTGAATGTTCGGCTACACTCTTCTGAGGAATGTACTTTTCTGCAGTTGTTATTCCTGATCAGGCACTTGTCTTGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAGGTTGGTTGTAATGTTCCACTCAAGGTTAAAACTGATTAAGTGGATTTGATGGGTCAAATTTAGATATTCTGTTGTTGTCCTGTTATTCCAAAAGAGAACAAAGACCTCCTAATTTTTTTTTTTGTCTATAGAGTTCTCCTGCAAGTTATTTTCTTATATTACTGAATTCCATTGCTTACCTCTCATATATGTTTCTTCCAGGCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTG-AAATTTGGTTCAGATGTTCATTTAATCGCTGGACACA-CCGCCTAGGTCCATT-GCCAC</genome_strand>
        <mrna_strand>GATAAACGGAGAGAGCAGGAGAAACTTGCTAAAGAACAAGCTGAAAGAGAGAGACTAGCAGAAGAACAAAGACGAATAGAAGCAGAGAAAGCTGAAATTGAAGCTGACAGAGCACAACCAAAGGACGAGACTGCAAAGAAAAAGAAAGTATTGCAAGAATTGATGGCAAAGGCCACAAAGACTCGTGATATCACCTGGTACATAGAGCCAAGTGAATTTAAATGCGAGGACAAGGTCAGGTTATACTATAACAAAAGTTCAGGTCCACTATCCCATGCTAAGGACCTGTGGATCCACGGAGGATATAACAATTGGAAGGATGGTTTGTCTATTGTCAAAAAGCTTGTTAAATCTGAGAGAATAGATGGTGATTGGTGGTATACAGAGG................................................................................................................................................TTGTTATTCCTGATCAGGCACTTGTCTTGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAG.........................................................................................................................................................................................................GCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAAATTTGGTTCAGAGGTTCATTTAATCGCTGGACACACCCGCCTAGGTCCCTTGGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315425" ref_strand="+" ref_description="SGN-E315425 [cTOA-22-I12]">
      <seq>tggattgggtttttgctgatggtccacccaagcatgccattgcttatgataacaatcaccgccaagacttccatgccattgtccccaagcagattccggaggaattatattgggttgaggaagaacatcagatctttaagaaacttcaggaggagagaaggcttagagaagccgctatgcgtgctaaggctgaaaaaacagcacttctgaaagctgaaacaaaggaaagaactatgaaatcatttttactatctcagaagcatgtagtatatactgagcctcttgatatccaagctggaagcagcgtcacagtttactataatcccgccaatacagtacttagtggtaaacctgaaatttggttcagatgttcatttaatcgctggacacaccgcctaggtccattgccacctcagaaaatgttgcctgctgaaaatggcacccatgtcaaagcaactgtcaaggttccattggatgcatatatgatggattttgtattttccgagagagaagatggtggtatttttgacaataagagcggaatggactatcacatacccgtgtttggaggagtcgctaaagaacctccgatgcatattgtccatattgctgtcgaaatgcacctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="19730" stop="21588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20030" g_stop="20217" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20218" i_stop="20418" i_length="201">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20419" g_stop="20689" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="459" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20690" i_stop="21116" i_length="427">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21117" g_stop="21288" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="630" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E315425" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20030" e_stop="20217"/>
          <exon e_start="20419" e_stop="20689"/>
          <exon e_start="21117" e_stop="21288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAGGTTGGTTGTAATGTTCCACTCAAGGTTAAAACTGATTAAGTGGATTTGATGGGTCAAATTTAGATATTCTGTTGTTGTCCTGTTATTCCAAAAGAGAACAAAGACCTCCTAATTTTTTTTTTTGTCTATAGAGTTCTCCTGCAAGTTATTTTCTTATATTACTGAATTCCATTGCTTACCTCTCATATATGTTTCTTCCAGGCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTGGTTAGTTTTCACGCACTCTGATGTCAGTGTACAAACACTACAGACTGTTCCGTCATCATAGCTTCAACTAGAAATAATTTTCTCTTACGCTTAGTAGTATCTTTAGTATTAAGTATAATTTGAGTTGCAGTTTCTTTCACATATATTTCTCTATTTTTCTAGACAAACGGAAGTTTTCTCTGTAACCGATAGCTAGAATGCTAATTGTCAGCTGAGATGAACATCTTGATATGGGATCCGAGACCTTAGGATTCTAAGAAGTAAGAAAGTAACTTAACTCTCTAATGCATTTATGTGGAGTAAGTTTGAACAACTGATGTATGTAAACATTTAATTACATATAAATATCAATTTTTGTCAAATAAAAACTAGTCTTATCTGAAAAACATCTTCACTTTTGCTTTCCATCTGGCTACTTATGTTTCAGTCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCTATTGC</genome_strand>
        <mrna_strand>TGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAG.........................................................................................................................................................................................................GCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAAT-GCACCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359439" ref_strand="+" ref_description="SGN-E359439 [cLHT-31-K2]">
      <seq>gaaatcatttttactgtctcagaagcatgtagtatatactgagcctcttgatatccaagctggaagcagcgtcacagtttactataatccggccaatacagtacttaatggtaaacctgaaatttggttcagatgttcatttaatcgctggacacaccgcctgggtccattgccacctcagaaaatgttgcctgctgaaaatggcacccatgtcaaagcaactgtcaaggttccattggatgcatatatgatggattttgtattttccgagagagaagatggtggtatttttgacaataagagcggaatggactatcacatacccgtgtttggaggagtcgctaaagaacctccgatgcatattgtccatattgctgtcgaaatggcaccaattgcaaaggtgggaggccttggtgatgttgttactagcctttcccgtgctgttcaagatttaaaccataatgtggacattatcttacctaagtatgactgtttgaagatgaataatgtgaaggactttcggtttcacaaaagctacttttggggtgggactgaaataaaagtatggtttggaaaggtggaaggactctcggtctattttttggagcctcaaaacgggttattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="20166" stop="23437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20466" g_stop="20689" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20690" i_stop="21116" i_length="427">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21117" g_stop="21292" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="400" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21293" i_stop="22284" i_length="992">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22285" g_stop="22392" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="508" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22393" i_stop="23023" i_length="631">
            <donor d_prob="0.565" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23024" g_stop="23133" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="618" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E359439" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20466" e_stop="20689"/>
          <exon e_start="21117" e_stop="21292"/>
          <exon e_start="22285" e_stop="22392"/>
          <exon e_start="23024" e_stop="23133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTGGTTAGTTTTCACGCACTCTGATGTCAGTGTACAAACACTACAGACTGTTCCGTCATCATAGCTTCAACTAGAAATAATTTTCTCTTACGCTTAGTAGTATCTTTAGTATTAAGTATAATTTGAGTTGCAGTTTCTTTCACATATATTTCTCTATTTTTCTAGACAAACGGAAGTTTTCTCTGTAACCGATAGCTAGAATGCTAATTGTCAGCTGAGATGAACATCTTGATATGGGATCCGAGACCTTAGGATTCTAAGAAGTAAGAAAGTAACTTAACTCTCTAATGCATTTATGTGGAGTAAGTTTGAACAACTGATGTATGTAAACATTTAATTACATATAAATATCAATTTTTGTCAAATAAAAACTAGTCTTATCTGAAAAACATCTTCACTTTTGCTTTCCATCTGGCTACTTATGTTTCAGTCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCTATTGCAAAGGTAGACTTGGGTGATTCCAACTTCTGTTTTATGCTAAATATAATACTTTTGTGCTTTAATTGATACTTCTTCACTGCAATTCAAGATCTGAAGATGTTTCTGTTCCACCAAGGACTATTTGTGCTTAATCCATAGTTTCTTGTAGCTACCTCTCCCCTCCAAGTTAGGTAAAAGTGTCACTTGCTATGCATTTCTAGAGTTGTAAATTTTCCGATGTTTGGCAGTTACAGGCAAACAGTTAGTCAATAAAGGCAGTCCATTTTAATATAAATGATACTCTTGTGCCTTTTATGGTTATTTTGCTTTGAGTTGACCTTTCTCATCAAAAAATGTTTATTCTTTAATATTTGGGGGAGATGGGGCTATTGGGAACTGTAAAGTGAAAAAAAAGGATAATGTTTTCCTGTATTACTTTTTGACTTTATATTAATTTTTTATTTTCCTATTAGTAAACCCAAGAACTATGGAGGATTTTTTTGAACCTCAAAGGCATCTCGTGGACCATGCCCAGGAAGGTCTCAGAGGCTTTAAAGAGTTGGGAGGCATCAGGGATGAATGCAAAGGACAGAAATAGATGGAGAATTATCCGTGCTATATATGGTGGACTATTTGAAAAGAAAGGAACTCTATGTGTTTTAAGAGCATAGAGAATAATGTTCAGATGGTCAAGTTAAACTGCATTTTATTGTTACATTTCTGTATAAATGGTTTCAGTACAATCGATGTACTGTTTTGTGATATAATCCAAGGATACCTATTTCGATTTCTCTTTATCTATTCGGGATAACGGATAGATTCTTGGGTGATAGAATTAGAAGAATCACTAGTTAGTTTAGTAGAGGCAGTGGTTTTACATAGTAATGTAAAGATGGCTATTTAGGAACAAAAATTGAGGTTTACTTTGAATACATTCAACAAATTCTTGTTCATTTACATATTGAAAGGAGTGATTCTATTCCAGCTGTTATGTTGTCATTACTTTGTTTTTGCAGGTGGGAGGCCTTGGTGATGTTGTTACTAGTCTTTCCCGTGCTGTTCAAGATTTAAACCATAATGTGGATATTATATTACCTAAGTATGACTGTTTGAAGATGAATAATGTAAGGTTACTGCTTCATTTTACCAAGTCTTCTCATTATTCATCACTCAACTTCCACACACTGTGTCTACAACCCAAGTAGGCTTCTCATTGATACTTACAATAGCTACTTTCTTGCACCAATATTTTGTTAATAAAAATGAAAAATAATAGCCTTGGTCGTCCTGCCAATCACGTGTAAATGTGCAACAGCTGTTATCCCCATTCTTGGATATCTGATAAAGGTACAAGTCTAAATGCTTCATGATTTCAAGAGAATATTCAAACACAACAACATACCAGTGTAATCCCACAAGTGGGGTCTGGGGAGGTTGGTGTGTACGCAAACCTTGCCCCTACCTTCTTGTGAATGTTCAAACACGATTCCTATAAATCATTCGAGTTGTTCATGTATCACATACTTTGACTAGTATTTTTCTTTTCATCTGTAAAATATAGTTATATTATTTACCAGCAAAAAAAATATGCCACGGAACATGTACATAAAAGCTTTTACATATTGTGTAAAGAGCTCAAAAAGTCAATAATGGCTTCTGCATCATTAAATGAAGCCATGTTACATTGATAAAGAAGTAGTAAGGAGATACATACTTTCACTAATATTATTGCATGTTGCTATGTATTCTTATTAGGTGAAGGACTTTCGGTTTCACAAAAGCTACTTTTGGGGTGGGACTGAAATAAAAGTATGGTTTGGAAAGGTGGAAGGACTCTCGGTCTATTTTTTGGAGCCTCAAAACGG</genome_strand>
        <mrna_strand>GAAATCATTTTTACTGTCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCGGCCAATACAGTACTTAATGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTGGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCAATTGCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGGCCTTGGTGATGTTGTTACTAGCCTTTCCCGTGCTGTTCAAGATTTAAACCATAATGTGGACATTATCTTACCTAAGTATGACTGTTTGAAGATGAATAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGACTTTCGGTTTCACAAAAGCTACTTTTGGGGTGGGACTGAAATAAAAGTATGGTTTGGAAAGGTGGAAGGACTCTCGGTCTATTTTTTGGAGCCTCAAAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735241" ref_strand="+" ref_description="SGN-E735241 [LB14DC05]">
      <seq>gcagcgtcacagtttactataatcccgccaatacagtacttagtggtaaacctgaaatttggttcagatgttcatttaatcgctggacacaccgcctaggtccattgccacctcagaaaatgttgcctgctgaaaatggcacccatgtcaaagcaactgtcaaggttccattggatgcatatatgatggattttgtattttccgagagagaagatggtggtatttttgacaataagagcggaatggactatcacatacccgtgtttggaggagtcgctaaagaacctccgatgcatattgtccatattgctgtcgaaatggcacctattgcaaagtaaacccaagaactatggaggatttttttgaacctcaaaggcatctcgtggaccatgcccaggaaggtctcagaggctttaaagagttgggaggcatcagggatgaatgcaaaggacagaaatagatggagaattatccgtgctatatatggtggactatttgaaaagaaaggaactctatgtgttttaagagcatagagaataatgttcagatggtcaagttaaactgcattttattgttacatttctgtataaatggtttcagtacaatcgatgtactgttttgtgatataatccaaggatacctatttcgatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="20231" stop="22358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20531" g_stop="20689" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20690" i_stop="21116" i_length="427">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21117" g_stop="21292" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="335" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21293" i_stop="21741" i_length="449">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21742" g_stop="22071" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="665" r_length="330" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E735241" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20531" e_stop="20689"/>
          <exon e_start="21117" e_stop="21292"/>
          <exon e_start="21742" e_stop="22071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTGGTTAGTTTTCACGCACTCTGATGTCAGTGTACAAACACTACAGACTGTTCCGTCATCATAGCTTCAACTAGAAATAATTTTCTCTTACGCTTAGTAGTATCTTTAGTATTAAGTATAATTTGAGTTGCAGTTTCTTTCACATATATTTCTCTATTTTTCTAGACAAACGGAAGTTTTCTCTGTAACCGATAGCTAGAATGCTAATTGTCAGCTGAGATGAACATCTTGATATGGGATCCGAGACCTTAGGATTCTAAGAAGTAAGAAAGTAACTTAACTCTCTAATGCATTTATGTGGAGTAAGTTTGAACAACTGATGTATGTAAACATTTAATTACATATAAATATCAATTTTTGTCAAATAAAAACTAGTCTTATCTGAAAAACATCTTCACTTTTGCTTTCCATCTGGCTACTTATGTTTCAGTCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCTATTGCAAAGGTAGACTTGGGTGATTCCAACTTCTGTTTTATGCTAAATATAATACTTTTGTGCTTTAATTGATACTTCTTCACTGCAATTCAAGATCTGAAGATGTTTCTGTTCCACCAAGGACTATTTGTGCTTAATCCATAGTTTCTTGTAGCTACCTCTCCCCTCCAAGTTAGGTAAAAGTGTCACTTGCTATGCATTTCTAGAGTTGTAAATTTTCCGATGTTTGGCAGTTACAGGCAAACAGTTAGTCAATAAAGGCAGTCCATTTTAATATAAATGATACTCTTGTGCCTTTTATGGTTATTTTGCTTTGAGTTGACCTTTCTCATCAAAAAATGTTTATTCTTTAATATTTGGGGGAGATGGGGCTATTGGGAACTGTAAAGTGAAAAAAAAGGATAATGTTTTCCTGTATTACTTTTTGACTTTATATTAATTTTTTATTTTCCTATTAGTAAACCCAAGAACTATGGAGGATTTTTTTGAACCTCAAAGGCATCTCGTGGACCATGCCCAGGAAGGTCTCAGAGGCTTTAAAGAGTTGGGAGGCATCAGGGATGAATGCAAAGGACAGAAATAGATGGAGAATTATCCGTGCTATATATGGTGGACTATTTGAAAAGAAAGGAACTCTATGTGTTTTAAGAGCATAGAGAATAATGTTCAGATGGTCAAGTTAAACTGCATTTTATTGTTACATTTCTGTATAAATGGTTTCAGTACAATCGATGTACTGTTTTGTGATATAATCCAAGGATACCTATTTCGATTTCTCTTTATCTATT</genome_strand>
        <mrna_strand>GCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCTATTGCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCCAAGAACTATGGAGGATTTTTTTGAACCTCAAAGGCATCTCGTGGACCATGCCCAGGAAGGTCTCAGAGGCTTTAAAGAGTTGGGAGGCATCAGGGATGAATGCAAAGGACAGAAATAGATGGAGAATTATCCGTGCTATATATGGTGGACTATTTGAAAAGAAAGGAACTCTATGTGTTTTAAGAGCATAGAGAATAATGTTCAGATGGTCAAGTTAAACTGCATTTTATTGTTACATTTCTGTATAAATGGTTTCAGTACAATCGATGTACTGTTTTGTGATATAATCCAAGGATACCTATTTCGATTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702971" ref_strand="+" ref_description="SGN-E702971 [FA20AG11]">
      <seq>gaaataaaagtatggtttggaaaggtggaaggactctcggtctattttttggagcctcaaaacgggttattttggaaagggtgcgtatatggttgtagcaacgacggtgaacgatttggtttcttctgtcatgcggctttggagttccttctgcaaggtggatttagtccggatatcattcattgccatgattggtctagtgctcctgttgcttggctctttaaggaacaatatacacactatggtctaagcaaatctcgtatagtcttcacgatacataatcttgaatttggggcagatctcattgggagagcaatgactcatgcagacaaagctacaacagtttcaccaacttactcacaggaggtgtctggaaaccctgtaattgcgcctcaccttcacaagttccatggtatagtgaatgggattgacccagatatttgggatcctttaaatgataagttcattccgattccgtacacctcggaaaatgttgttgaaggcaaaacagcagccaaggaagctttgcagcaaaaacttggactgaaacaggctgaccttcctttggtaggaattatcacccgcttaactcaccagaaaggaatccacctcattaaacatgcaatttggcgtaccttggaacggaacggacaggtagtcttgcttggttctgctcctgatcctaggatacaaaacgattttgttaatttggcaaatcaattgcactccacatataatgaccgcgcacgactctgtctaacatatgacgagccactctctcacctgatatatgctggtgctgatttcattctagttccttcaatatttgagccatgtggactaacacaacttactgctatgagatatggttcaattccagtcgtgcgtaaaactggaggactttatgatactgtatttgatgttgaccatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="22769" stop="32381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23069" g_stop="23133" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23134" i_stop="23801" i_length="668">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23802" g_stop="23907" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="171" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23908" i_stop="25151" i_length="1244">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25152" g_stop="25322" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="342" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25323" i_stop="25846" i_length="524">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25847" g_stop="25975" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="471" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25976" i_stop="29827" i_length="3852">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29828" g_stop="30010" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="654" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30011" i_stop="30416" i_length="406">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30417" g_stop="30548" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="786" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30549" i_stop="30642" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30643" g_stop="30754" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="898" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30755" i_stop="32047" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32048" g_stop="32081" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="932" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E702971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>932</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23069" e_stop="23133"/>
          <exon e_start="23802" e_stop="23907"/>
          <exon e_start="25152" e_stop="25322"/>
          <exon e_start="25847" e_stop="25975"/>
          <exon e_start="29828" e_stop="30010"/>
          <exon e_start="30417" e_stop="30548"/>
          <exon e_start="30643" e_stop="30754"/>
          <exon e_start="32048" e_stop="32081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAAAAGTATGGTTTGGAAAGGTGGAAGGACTCTCGGTCTATTTTTTGGAGCCTCAAAACGGGTATGCTTAATGCGAAAATGATGCATAATGTTTTTGTTTTATCAGAAAAAATAAGTGAAACTTGTTGTTTCATGGTTTATAATCAACTTTTGTATGTCTGTTCACTAATCAGTAGCTGTTTATCATAAAGTAAAGAGAAAAGTAGAATGCAATCTAAAGGCAGTCCAAGATGAACTGCTGATCAAGCTCCGTTATCTACTCTCTTTAGTTATCTCGCAAAACAAATAGAAGTATTGCAGCCCTTTTCTCCTAAAGCTTTCTTTAGTTGAATATTAGAAGTTTGTGTGTTCCCTAAATGAAAATCTCATTTCCTGACCATTTTCCTAATTTATATGTTGTTGAACTGCAACCGCCATCACAGGAGTTGGTGGTATTTCTGGAAATGATAGTAAAGAATGGAGAATCAATAATTATATCGAATGACTTACAACTGAATATAGACCCTGCTTCCATCAATTTATTTCCTTTTAGGATCAATGTATATATATACGCTGTTCCACCTTTTCGATGCTTTTATTGTAACAATATAATGGTATGTAGTACAGCAGAACATACAATCATATTCTCAACTATGTGTGCCTGTTTTTTGTTTTCTTTTGATCAAGCATAGGTGAATTAGGCATTTTGGATGTCTTCATAATTTTAGTGCTTCATTATTGTTCTTTTAGGTTATTTTGGAAAGGGTGCGTATATGGTTGTAGCAACGACGGTGAACGATTTGGTTTCTTCTGTCATGCGGCTTTGGAGTTCCTTCTGCAAGGTGGATTTAGTCCGGTATGTTCCAGATTATATCAATATGCTAATTCTGAGGTCTCATATTTTCTTGATTCCTATTTCTCCAAATTTTAATCTTATAAATTTCTTAGGATAATAGCTTATTTGGGAAAGCTATAAATATTTTCTGAAGGAGGCAAGTCGATTGCAGATATTTTATTGTAATAGCATCAGATTCAAATTTTTATGTCAATGAATGAATTGCTAATTACCAAGGAGTATAACCAAGTCGTTTTAATTATTTTGTAATGTGTGTGGTTAGATGTGAGAAAATGGTGTTTTAGAATTCATGAAACTTTCTTTGAGCTAATAAAGATGGTGAAAATGGTGGTTTTGTAAGTTATGTGGGTCCCACCATTATATTTAACGGTTTTGGGGTAAATTGTTAAGTTTAGGATAAAACACTAAATTGAACACATTTTGTCATACATGAAGGACAATTTCAATCACCTAGAGTATTTTAAGGACCAAAATAAAGCAACCCCAATACATTGAGGACCATTTTGATCATTTTCTCTTCCAGATTATATCAATATGCTAATTCTGAGGTCTCATATTTTCTTGATTCCTATTTCTCCAGATTTCAATCTTATAAATTCCTTTGGATAATAGCTTATTTGGGAAAGCTATAAATATTTTCTGAAGGAAGCAAGTCGATTGCAGATATTTTATAGGAATAGCGTCAGATTAGAATTTTTATGTCAATGAATGAATTGCTAATTACCAAGGAGTATAACCAAGTCGTTTTAATTTCTCACTGAAGTTGTTGGATTAATTGGGTCTGCGACATGCTTCCTTGGTCCCAAATTAACTTCTTAAGTTCACCTCGGAGGATTCAAATTGCGAAGAATTCAACAATTAAATTATTCATGACTTAGTCTTTTACAACCAAAAGCTTGATTATTTGATACCATTTTTATCATAATTTTTAATAAGACCAACTATTAGTTTCCAAAGTGTAAGTTTGAGGTGAAATATCATTCTCAAGACACAAAATTAGACATTTTGACCTCTAAATTCAAATTCAAATTCAAACATCTAAAGTGGGAGGGACTGTGTACTACTTTCCTCTTTCTAAATAATTTTCTTCCTACATATTACTGCTTGCTACAATGAATGGGAGCTTTTGGGCACTGAACTGAGGATCTCAAATGTTTCTGTGAAGTGATACGGTTTCTTATATTTTCTGTTGTTGAAATGAAATTTTATTTGCACGTCTTCTCCACTGTTCATTTGTCCGGCAGGATATCATTCATTGCCATGATTGGTCTAGTGCTCCTGTTGCTTGGCTCTTTAAGGAACAATATACACACTATGGTCTAAGCAAATCTCGTATAGTCTTCACGATACATAATCTTGAATTTGGGGCAGATCTCATTGGGAGAGCAATGACTCATGCAGACAAAGCTACAACAGTAAGTGCTTCTATCACCTTTACCTTACAAATGGCTGTTTGTGCTTGATGCTGTTGTCTGTGGAAAAATGGTGCTACGCATACGCCAGAGGCTTTTTGTAATTTGCCAGACAAAAGTTCTGGATTTGAGTTCCTGAAGGTCATCATTTTGTCCAGCTTCCTATTTGTCTCATGTTTGTTTCGCCTTTTCATTTTTCGGAAGAAGATTGTAAATTGCACCCCAGGGAAGAGGCTCTATTTAGCTGCTTTCAGAAACTAGTCTAACAACCAAACACTGCCTGAAGGCCTTCAGCTATGGACGCTGTTGGAGATAAAAGTAAGACCAGACAAAATAAATCTAAAAGGAAAAGCTACACGAAAACATGCTCTTGAAGTATACATAAAGAAAGTGTTATGGGCACCAAGTATACTTCTTTTTTTTGGTTTTATCAAAAAAGAAAAGTATCCTTCTTTGTTTGTTTTAGTGAAACTGTAAAAATTTCTCTATGAAAGGTAAAGCTGTATCCTAATAAGATTTACATGCAGGTTTCACCAACTTACTCACAGGAGGTGTCTGGAAACCCTGTAATTGCGCCTCACCTTCACAAGTTCCATGGTATAGTGAATGGGATTGACCCAGATATTTGGGATCCTTTAAATGATAAGTTCATTCCGGTAAGTTTTCTCGGCTTTTCTCAGTTATTATATCACCTATAAGGGCACACATTGGAATCAGTTCATGCTTTCTTCTCCCCCTTATCTCTCTGCATATAAACTGTCCAACTGCAATTCTTGAAAGTGACCTCCACCCTAAAGAGGTTATTGTAACTGATTATTGGTCAACTGTGGAGTGCAAGGATATCTGATCTCAAAAAAAAGAAGCTTAGTAGTCAACTTACCTTACTTCTTTGCTTGCAAGAAAGGTTGTACAACTCCTAATGCTCTACATAGAACTCTACAAGAAAACTGTTGGATATGCAGAGAATATTTGATCATGAGCAGCAACAACAACACACCCGATGCACTTCCACAGGTGGGTTTGGGGAGGGTAATGTGTACACAAACCTTACCCCTGCCACCTCTACCTTGTGGAGGTAAGGAGGTTGTCTCTGATAGAACCTCGGCTAAAGGATAGCATTTCAAAGATACAAAATGAAGAAGTAACAGTAACAACAACAAAATAATACGATAACTGAAGCATAAGAAACAACATATAATAGAAAACTATGAGAATAATACTACTAGTATGGAAGGAGAAGAAGACACGGTGCTCCAAATACCACCCAGCCTATCCCACAGTAAAATGAGAAAACGGTCAACTACCTACCAACATACTACCTTAATCTGCAACATCCACATCCTCCTATCTAGATCATGTCCTCAGTAAGTTGAAGATGTGTCATGTCCTGCTTGATGAAAGAATCCAGATTCCATACTATGATGTGGGCTGGGGATCTTTCTTCTCTTTCTAAAAGAGAAGATAACAATCACTGGATGTTTGGGCTGCCAGTGCAAAGACATTAAAGCTTTTGTGGATTTTTACCTCATTTTAATTAGCCAATTTCAGAACAAGAAGGCTGCTCCCATTGATACCCAGATATTGTCCTATTTTTGTGTGTAGGTGCATACAGAGGCGACTTTAGAATTTTAAGCATGGGCTATTTGACAAGAATATTGTTCTCTAAAGTGGCACTTGTTTGATTTCTTGTGTATCTGTACATGAGTAGACCAGACCCTTCCTCAGCTATGCTGTGATTGCTGTCATTAGTTGTTAATTTTTTCTATGACCACTTCATCTGTTAGGCTTAGAATCTTTTGGTGATCACTACATTTGACTCTTTTAACTGTGTTAGTCTTTTGTGTGTCTTGGTGATTATTCCTTCAAGTAACTTTTGGTGTGATTATTCTGAAGCTAGATGTGCACTTAACTTGTTCAGTTGGAAAAACTTCAACTACTGTAAATAGCACTGAACAATTTTTTAATTTTGTTAGCACCCTACTCCTAGCATGGTCTTTCTCATGTATTGGAGCTAACACACTTCTTTTGCATCTTTTGATGACTTTTTAATGAAATTTCTCACTTCATAGAAAAGATAGTGTGGAGAAACTGCCAACCACCTATCTAGGCATGCCTTTGGTAGCAGTCATGAAGCCTTTGAAATATGGGACGGTATCCCAGAGAAGATTGAAAGGAAGCTATCAAGAAGACTCAGTATCTTTCTCGAGGGGGAAGATTGATTCTTGTAAATTCTGTTCTTGACTCTTTACTCACTTTTGTGATGTCCTTATTCCCAATTCCAGCAAAAGTAGAAGAACATTGGACAAGTTAAGGAGAAACTTTCTATGCGAGGCAGCTATAATTTAGTTAACTGGAAGACCGTAATCCTTAGCAAAGATAGAGGGGGGCTGGGAATTAGAAACTTGAGATTGCAAAATGAAAGTCTGCTGAAAAAGTGGTTGTGGAGGTACACTGAGGAGGGAAGTGCTCTCTGTAAAGAGGTGATTAAAGCTATGTATGGTGAATTAAGCCCTTGGTGAACAGAGAACACAGTTGAACCTTATGGTGTGGGAGTATGGAGAACAATCAGAAACCTGTGGCCCCAAATGGAAGCAGAATTGTTTATCAAGGTGGGAAATGGCAATAAATTAGATTTTGGAAGGATATTTGGATAGAACAATCCTCCCTTAGCGATCTCTTCCCAGATCTCTTTCAAATCTCTGAGAATCCTGATGCTAATGTAAATGATTGTTGGACAGAACAGGGATGGAATTTAGTATTTAGAAGATTTCTCAATGATTGGGAGGTGGAAAGGGTTGCAGAGTTGCTAGGGAAGTTAGGTGAATGAGAATAGACACAAATGCCACAGACAGGGTGCTATGGAGGCACAAAAATGATGGTCTTTATACAGTTAGCAGTGCGTACAGAAGAGGTCTCCAACTGATGGCAGGAGATCCAAACCATCAATGGAACTATTTTTGGACTACAAAAGTGAAATGTTTCACTTGGCTAGTGATAGAGGGTTTGTTTAACACAGGAAGTATTACAGAAGAAGGGTAGACAAATGGTTCCCAGATGCTTTTTGTGCAATTTGACAGGAGAAACAAACAAATCACCTTTTCTTGCACTGTAACTTTACCAAGCAAGTCTGGAATTTATTTCTTAGCATTTCAAATCTGAATTGGACAATGCCAAAACATACATCAGAGTTGCTGAAGAGCTGGGTAAGGAGAGGAGGCAGCAAGAGCCAAAGGAGATGGTGGAGGTTAATACCATCATGTATATGGTGGTCAGCTTGGAAGGAAAGGAATGGTAGATGTTTTGAAAATAGATACAATTCCATTCACAAGGTCAAATGGAATTGTATAGTATCCTTACCTTTTTGGTGTAAACAGTTGTGTATAGTAGATACAGACCAGATTGTAGATTTGATAGGAAGCTTGTAACTAACACTTTTTGGTGGAGACAAGCATGCCCTTAATGCTGAAGAATACAATCTTACCAGTTTCAAAAAAACAAAAAAAAAAAGAAATAAACCTTAGACCTAACACAGTCCCCAAAGCTAGTTCATGAGATGAGGATTCCCCAAGATCATAAAAGGAGACATAATCCCATCCCAAAACTATATCAGACTCTTAGCACTCACACTCGCAATAGTGGACATTTGGAGCTTGGATAATAGAACATGGGTACCCGACATCAGGTAAACGAAGAATTGGAATGGGTCTGGCTCACCTAACTCAACCCTATAAGTCAGCTAATGAGGTAAGGATTGCCCAATACCATATAAAGAGGCAAATATTCCATTCCATATCAATGTGGGACCCTATCAAACAGTTTGTGTTAGCACATAATACACCTCCAGTAGTCTTACCTCTGAAAGTTATGATGTTTATCTACATTTATTGGTTTGCTATTCCCATCATCCCAATATGAGGGTGTTTTATAAAGACTTTGAAACTTGTGTAAAACATGCCAGACATTTATGTGGCTATAAATCACTTCATTAAGGGTAAAATGATTTTTTTAAAAGTTAAATTGTATCTAAATAATTGGTAGTAGAGGGTCAAACGAAAACTGGTGGGTGACGATTCCAGCATGTATCTGGTGGACACTAAGGAAGTAAAGGAATGCCAGATGTTTTGAAGAGTAGCAACATTCAGAGATAAAGCGTCAGAGTCTTAGTTTGCTGTATTTTTGGTGTTAACAAGAGTTGGGGATATAGTAGCACTAGTTGGCTTCATATGTAACTTGTAAAGTTCTTCTATTTTTGCAATTCTTAGATTCTTCCTCATCGTTTCTTGGATGATGAGTTTTTTGTGAATACAAAGTTACCATTGTCTCCAAAAAAAATTGCATCTAATATAAAAAGGTTCTTCTTTTTGGGACACTAAAAAGGGAAGTGTCACATATATGGAGTATTATATTTGGTTATTGTGAGGTTCATTCTTATTGTAGCTTTAAGTTCTTGGATCTTAAATCATGTTTATTTGATGGTTGTCGCACTGTTGAAATGCATGCTATTACAGATTCCGTACACCTCGGAAAATGTTGTTGAAGGCAAAACAGCAGCCAAGGAAGCTTTGCAGCAAAAACTTGGACTGAAACAGGCTGACCTTCCTTTGGTAGGAATTATCACCCGCTTAACTCACCAGAAAGGAATCCACCTCATTAAACATGCAATTTGGCGTACCTTGGAACGGAACGGACAGGTATTTTCTCTGAAGGTGTTCTTAAGTTCTCAGATCCCCCCTTCTTCTTCTCTTTTGCTTGGGGGAGGGGGGGACTATGGGGAACATACTCATCTTCAGCTTTTGGCTGGTCGAGATGTTGCTATATGCTCTGATAATAACTAGTGTAATTTTTTTTTTAAAAATCATTTGGTTTCGGATGTCATGTCTAGTTTGTATATAGTAACTGATTACTGATCTAAGATGCCAGAGAGTACCTGTTTATTATTTTTTACTTTAAAAAATCCAGAGAACACCAGCTCTTGAATGTTTTCGTTACCAATTTTTGCATCTTGTTCTCTCAAGTCTTATTCTTAATGGAGTCCCATTTTAGAAAGTCTATTTTAGCAGAATGGTATGATCTTCTATTGACAAAAAGCTCTGACAGGTAGTCTTGCTTGGTTCTGCTCCTGATCCTAGGATACAAAACGATTTTGTTAATTTGGCAAATCAATTGCACTCCACATATAATGACCGCGCACGACTCTGTCTAACATATGACGAGCCACTCTCTCACCTGGTATTGTTTCTCCTTTCCTTGCTTGTTGCATATTTTTGTCTTCAAGCCTTATGTGTACCTTTTTATTATATCATTCCTTTTGATACAATTGCAGATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATATTTGAGCCATGTGGACTAACACAACTTACTGCTATGAGATATGGTTCAATTCCAGTCGTGCGTAAAACTGGAGGTACCTTTTTCTTATGACCTATATTTTTAGAAATTTGAATATCTTTCCATGGTGCTGCTTGCTTAGTACCTCTCTGCCACTTGCACTGTATGCTCAGATATGAAGGTAGAGCAACTCACTCTAGCGAAGTTTCTCTCTCTCATGACCATAATGTTCCCTTTTTTTAATGATGTGACCATCTTTTTGGAACTACAGGTGCATATATATGAATGACTATTTTTGATTTGGTTGAGCCATAATTAAATAATAGCGCCTTTTTTCAAAAAACTTACTTTCAGATGAGGTAGTTACACAATTCAACATGGTGGCAAAGTTGATAGAGCTTTTGGGATCATGTTCCACTACTACCCATTAAACAAAAATAAAGTTTAGTATCACCCATTATCAAAAATCAGAAGGTATCTCTGCATGCTTGGACCATCAGACCCTCATGTATGAGAACAACATTATAACCATAATTCATAAAATATTACTTAATAAAAGAAGACAATAATTCCTTATTAAGAATAAAAAGAGACGGTAATTAATTAAAAAAAACTGTTTTCCCCTAACAATTTTTAAGCTTTTAGATGTGGAGATTACTGTTATGGTCCCCTGTTATGGATCTAATTATGGGACGCTGCAAGATAAAATCTAAAGTTCTCTTTTTTCTACCTATAGTGCTGGTTCATTAAGCTGCGATCTCTTGAGTTTGAAGTACTCAAAAACTTGACTAATTTTCTGCTTAACATTTCACTGAATCAAATACATTAAATACAACACTGAAACAAGGAAAATAACTGTCTACTGCCTACTACAACTGAATGAGAAAGTGGAGAAATAACCTCCTACTGCAACAACTCCTACCTAGAAATAGGAAAAATAAATAACTAAAAAGCTGTAATAATCTACTACAAACACTGCTGGACAGAAATAAAAAATAAGTAACTTATAAGCTGAAGAATTCTACTTCCGAATTTCCTTAAATATTCCATGTGTAGACCATTGGTAGACTAAAAGGGTGCTAACAATCATCATACACTACAGCAGTTTTCAGTCTCTTGTAACATTGCAACTGCAGATATTTATGCCGATCAGAATGTTTTAATTGTAGTTTCCTCTTTTAGTAGCGAATTTACTTGATGTTTATTAGACTCACAAAAATTATTGCATTCTCTTGAATTAAGTGGGAGAACAAATATTTTTTGCACATGGTAGAATTTTCTTTTGATGCCGTTGGCTTAGTTATTATTTAGCAGATCCTAATCATTTTCTTCTGAATGTGTGTTCTAACCTCTGCATTCTGTATATTAGGACTTTATGATACTGTATTTGATGTTGACCATGA</genome_strand>
        <mrna_strand>GAAATAAAAGTATGGTTTGGAAAGGTGGAAGGACTCTCGGTCTATTTTTTGGAGCCTCAAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGGAAAGGGTGCGTATATGGTTGTAGCAACGACGGTGAACGATTTGGTTTCTTCTGTCATGCGGCTTTGGAGTTCCTTCTGCAAGGTGGATTTAGTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATTCATTGCCATGATTGGTCTAGTGCTCCTGTTGCTTGGCTCTTTAAGGAACAATATACACACTATGGTCTAAGCAAATCTCGTATAGTCTTCACGATACATAATCTTGAATTTGGGGCAGATCTCATTGGGAGAGCAATGACTCATGCAGACAAAGCTACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCAACTTACTCACAGGAGGTGTCTGGAAACCCTGTAATTGCGCCTCACCTTCACAAGTTCCATGGTATAGTGAATGGGATTGACCCAGATATTTGGGATCCTTTAAATGATAAGTTCATTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGTACACCTCGGAAAATGTTGTTGAAGGCAAAACAGCAGCCAAGGAAGCTTTGCAGCAAAAACTTGGACTGAAACAGGCTGACCTTCCTTTGGTAGGAATTATCACCCGCTTAACTCACCAGAAAGGAATCCACCTCATTAAACATGCAATTTGGCGTACCTTGGAACGGAACGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTCTTGCTTGGTTCTGCTCCTGATCCTAGGATACAAAACGATTTTGTTAATTTGGCAAATCAATTGCACTCCACATATAATGACCGCGCACGACTCTGTCTAACATATGACGAGCCACTCTCTCACCTG..............................................................................................ATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATATTTGAGCCATGTGGACTAACACAACTTACTGCTATGAGATATGGTTCAATTCCAGTCGTGCGTAAAACTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTATGATACTGTATTTGATGTTGACCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689616" ref_strand="+" ref_description="SGN-E689616 [LH_Ea01F22]">
      <seq>ccctttattttggagcctcaaaacgggttattttggaaaggcttcgtatatggttgtagcaatgacggtgaacgatttggtttcttctgtcacgcggctttggagttccttctgcaaggtggatttagtccggatatcattcattgccatgattgggctagtgctcctgttgcttggctctttaaggaacaatatacacactatggtctaagcaaatctcgtatagtcttcacgatacataatcttgaatttggggcagatctcattgggagagcaatgactcatgcagacaaagctacaacagtttcaccaacttactcacaggaggtgtctggaaaccctgtaattgcacctcaccttcggggggtccatggtatagtgaatgggattgacccagatatttgggatcctttaaatgataagttccttccgattccgtacaccctcggaaaatgttgttgaaggcaaaacagcagcccaaggaagctttgcagaaaaagcttggattgaaacaggctgaccttcctttggctggaattatcacccgcttaactcaccagaagggaatccacctcattaaacatgcaatttggcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="22810" stop="30290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23108" g_stop="23133" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23134" i_stop="23801" i_length="668">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23802" g_stop="23907" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="132" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23908" i_stop="25151" i_length="1244">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25152" g_stop="25322" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="303" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25323" i_stop="25846" i_length="524">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25847" g_stop="25975" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="432" r_length="129" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25976" i_stop="29827" i_length="3852">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29828" g_stop="29990" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="597" r_length="165" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E689616" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23108" e_stop="23133"/>
          <exon e_start="23802" e_stop="23907"/>
          <exon e_start="25152" e_stop="25322"/>
          <exon e_start="25847" e_stop="25975"/>
          <exon e_start="29828" e_stop="29990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATTTTTTGGAGCCTCAAAACGGGTATGCTTAATGCGAAAATGATGCATAATGTTTTTGTTTTATCAGAAAAAATAAGTGAAACTTGTTGTTTCATGGTTTATAATCAACTTTTGTATGTCTGTTCACTAATCAGTAGCTGTTTATCATAAAGTAAAGAGAAAAGTAGAATGCAATCTAAAGGCAGTCCAAGATGAACTGCTGATCAAGCTCCGTTATCTACTCTCTTTAGTTATCTCGCAAAACAAATAGAAGTATTGCAGCCCTTTTCTCCTAAAGCTTTCTTTAGTTGAATATTAGAAGTTTGTGTGTTCCCTAAATGAAAATCTCATTTCCTGACCATTTTCCTAATTTATATGTTGTTGAACTGCAACCGCCATCACAGGAGTTGGTGGTATTTCTGGAAATGATAGTAAAGAATGGAGAATCAATAATTATATCGAATGACTTACAACTGAATATAGACCCTGCTTCCATCAATTTATTTCCTTTTAGGATCAATGTATATATATACGCTGTTCCACCTTTTCGATGCTTTTATTGTAACAATATAATGGTATGTAGTACAGCAGAACATACAATCATATTCTCAACTATGTGTGCCTGTTTTTTGTTTTCTTTTGATCAAGCATAGGTGAATTAGGCATTTTGGATGTCTTCATAATTTTAGTGCTTCATTATTGTTCTTTTAGGTTATTTTGGAAAGGGTGCGTATATGGTTGTAGCAACGACGGTGAACGATTTGGTTTCTTCTGTCATGCGGCTTTGGAGTTCCTTCTGCAAGGTGGATTTAGTCCGGTATGTTCCAGATTATATCAATATGCTAATTCTGAGGTCTCATATTTTCTTGATTCCTATTTCTCCAAATTTTAATCTTATAAATTTCTTAGGATAATAGCTTATTTGGGAAAGCTATAAATATTTTCTGAAGGAGGCAAGTCGATTGCAGATATTTTATTGTAATAGCATCAGATTCAAATTTTTATGTCAATGAATGAATTGCTAATTACCAAGGAGTATAACCAAGTCGTTTTAATTATTTTGTAATGTGTGTGGTTAGATGTGAGAAAATGGTGTTTTAGAATTCATGAAACTTTCTTTGAGCTAATAAAGATGGTGAAAATGGTGGTTTTGTAAGTTATGTGGGTCCCACCATTATATTTAACGGTTTTGGGGTAAATTGTTAAGTTTAGGATAAAACACTAAATTGAACACATTTTGTCATACATGAAGGACAATTTCAATCACCTAGAGTATTTTAAGGACCAAAATAAAGCAACCCCAATACATTGAGGACCATTTTGATCATTTTCTCTTCCAGATTATATCAATATGCTAATTCTGAGGTCTCATATTTTCTTGATTCCTATTTCTCCAGATTTCAATCTTATAAATTCCTTTGGATAATAGCTTATTTGGGAAAGCTATAAATATTTTCTGAAGGAAGCAAGTCGATTGCAGATATTTTATAGGAATAGCGTCAGATTAGAATTTTTATGTCAATGAATGAATTGCTAATTACCAAGGAGTATAACCAAGTCGTTTTAATTTCTCACTGAAGTTGTTGGATTAATTGGGTCTGCGACATGCTTCCTTGGTCCCAAATTAACTTCTTAAGTTCACCTCGGAGGATTCAAATTGCGAAGAATTCAACAATTAAATTATTCATGACTTAGTCTTTTACAACCAAAAGCTTGATTATTTGATACCATTTTTATCATAATTTTTAATAAGACCAACTATTAGTTTCCAAAGTGTAAGTTTGAGGTGAAATATCATTCTCAAGACACAAAATTAGACATTTTGACCTCTAAATTCAAATTCAAATTCAAACATCTAAAGTGGGAGGGACTGTGTACTACTTTCCTCTTTCTAAATAATTTTCTTCCTACATATTACTGCTTGCTACAATGAATGGGAGCTTTTGGGCACTGAACTGAGGATCTCAAATGTTTCTGTGAAGTGATACGGTTTCTTATATTTTCTGTTGTTGAAATGAAATTTTATTTGCACGTCTTCTCCACTGTTCATTTGTCCGGCAGGATATCATTCATTGCCATGATTGGTCTAGTGCTCCTGTTGCTTGGCTCTTTAAGGAACAATATACACACTATGGTCTAAGCAAATCTCGTATAGTCTTCACGATACATAATCTTGAATTTGGGGCAGATCTCATTGGGAGAGCAATGACTCATGCAGACAAAGCTACAACAGTAAGTGCTTCTATCACCTTTACCTTACAAATGGCTGTTTGTGCTTGATGCTGTTGTCTGTGGAAAAATGGTGCTACGCATACGCCAGAGGCTTTTTGTAATTTGCCAGACAAAAGTTCTGGATTTGAGTTCCTGAAGGTCATCATTTTGTCCAGCTTCCTATTTGTCTCATGTTTGTTTCGCCTTTTCATTTTTCGGAAGAAGATTGTAAATTGCACCCCAGGGAAGAGGCTCTATTTAGCTGCTTTCAGAAACTAGTCTAACAACCAAACACTGCCTGAAGGCCTTCAGCTATGGACGCTGTTGGAGATAAAAGTAAGACCAGACAAAATAAATCTAAAAGGAAAAGCTACACGAAAACATGCTCTTGAAGTATACATAAAGAAAGTGTTATGGGCACCAAGTATACTTCTTTTTTTTGGTTTTATCAAAAAAGAAAAGTATCCTTCTTTGTTTGTTTTAGTGAAACTGTAAAAATTTCTCTATGAAAGGTAAAGCTGTATCCTAATAAGATTTACATGCAGGTTTCACCAACTTACTCACAGGAGGTGTCTGGAAACCCTGTAATTGCGCCTCACCTTCACAAGTTCCATGGTATAGTGAATGGGATTGACCCAGATATTTGGGATCCTTTAAATGATAAGTTCATTCCGGTAAGTTTTCTCGGCTTTTCTCAGTTATTATATCACCTATAAGGGCACACATTGGAATCAGTTCATGCTTTCTTCTCCCCCTTATCTCTCTGCATATAAACTGTCCAACTGCAATTCTTGAAAGTGACCTCCACCCTAAAGAGGTTATTGTAACTGATTATTGGTCAACTGTGGAGTGCAAGGATATCTGATCTCAAAAAAAAGAAGCTTAGTAGTCAACTTACCTTACTTCTTTGCTTGCAAGAAAGGTTGTACAACTCCTAATGCTCTACATAGAACTCTACAAGAAAACTGTTGGATATGCAGAGAATATTTGATCATGAGCAGCAACAACAACACACCCGATGCACTTCCACAGGTGGGTTTGGGGAGGGTAATGTGTACACAAACCTTACCCCTGCCACCTCTACCTTGTGGAGGTAAGGAGGTTGTCTCTGATAGAACCTCGGCTAAAGGATAGCATTTCAAAGATACAAAATGAAGAAGTAACAGTAACAACAACAAAATAATACGATAACTGAAGCATAAGAAACAACATATAATAGAAAACTATGAGAATAATACTACTAGTATGGAAGGAGAAGAAGACACGGTGCTCCAAATACCACCCAGCCTATCCCACAGTAAAATGAGAAAACGGTCAACTACCTACCAACATACTACCTTAATCTGCAACATCCACATCCTCCTATCTAGATCATGTCCTCAGTAAGTTGAAGATGTGTCATGTCCTGCTTGATGAAAGAATCCAGATTCCATACTATGATGTGGGCTGGGGATCTTTCTTCTCTTTCTAAAAGAGAAGATAACAATCACTGGATGTTTGGGCTGCCAGTGCAAAGACATTAAAGCTTTTGTGGATTTTTACCTCATTTTAATTAGCCAATTTCAGAACAAGAAGGCTGCTCCCATTGATACCCAGATATTGTCCTATTTTTGTGTGTAGGTGCATACAGAGGCGACTTTAGAATTTTAAGCATGGGCTATTTGACAAGAATATTGTTCTCTAAAGTGGCACTTGTTTGATTTCTTGTGTATCTGTACATGAGTAGACCAGACCCTTCCTCAGCTATGCTGTGATTGCTGTCATTAGTTGTTAATTTTTTCTATGACCACTTCATCTGTTAGGCTTAGAATCTTTTGGTGATCACTACATTTGACTCTTTTAACTGTGTTAGTCTTTTGTGTGTCTTGGTGATTATTCCTTCAAGTAACTTTTGGTGTGATTATTCTGAAGCTAGATGTGCACTTAACTTGTTCAGTTGGAAAAACTTCAACTACTGTAAATAGCACTGAACAATTTTTTAATTTTGTTAGCACCCTACTCCTAGCATGGTCTTTCTCATGTATTGGAGCTAACACACTTCTTTTGCATCTTTTGATGACTTTTTAATGAAATTTCTCACTTCATAGAAAAGATAGTGTGGAGAAACTGCCAACCACCTATCTAGGCATGCCTTTGGTAGCAGTCATGAAGCCTTTGAAATATGGGACGGTATCCCAGAGAAGATTGAAAGGAAGCTATCAAGAAGACTCAGTATCTTTCTCGAGGGGGAAGATTGATTCTTGTAAATTCTGTTCTTGACTCTTTACTCACTTTTGTGATGTCCTTATTCCCAATTCCAGCAAAAGTAGAAGAACATTGGACAAGTTAAGGAGAAACTTTCTATGCGAGGCAGCTATAATTTAGTTAACTGGAAGACCGTAATCCTTAGCAAAGATAGAGGGGGGCTGGGAATTAGAAACTTGAGATTGCAAAATGAAAGTCTGCTGAAAAAGTGGTTGTGGAGGTACACTGAGGAGGGAAGTGCTCTCTGTAAAGAGGTGATTAAAGCTATGTATGGTGAATTAAGCCCTTGGTGAACAGAGAACACAGTTGAACCTTATGGTGTGGGAGTATGGAGAACAATCAGAAACCTGTGGCCCCAAATGGAAGCAGAATTGTTTATCAAGGTGGGAAATGGCAATAAATTAGATTTTGGAAGGATATTTGGATAGAACAATCCTCCCTTAGCGATCTCTTCCCAGATCTCTTTCAAATCTCTGAGAATCCTGATGCTAATGTAAATGATTGTTGGACAGAACAGGGATGGAATTTAGTATTTAGAAGATTTCTCAATGATTGGGAGGTGGAAAGGGTTGCAGAGTTGCTAGGGAAGTTAGGTGAATGAGAATAGACACAAATGCCACAGACAGGGTGCTATGGAGGCACAAAAATGATGGTCTTTATACAGTTAGCAGTGCGTACAGAAGAGGTCTCCAACTGATGGCAGGAGATCCAAACCATCAATGGAACTATTTTTGGACTACAAAAGTGAAATGTTTCACTTGGCTAGTGATAGAGGGTTTGTTTAACACAGGAAGTATTACAGAAGAAGGGTAGACAAATGGTTCCCAGATGCTTTTTGTGCAATTTGACAGGAGAAACAAACAAATCACCTTTTCTTGCACTGTAACTTTACCAAGCAAGTCTGGAATTTATTTCTTAGCATTTCAAATCTGAATTGGACAATGCCAAAACATACATCAGAGTTGCTGAAGAGCTGGGTAAGGAGAGGAGGCAGCAAGAGCCAAAGGAGATGGTGGAGGTTAATACCATCATGTATATGGTGGTCAGCTTGGAAGGAAAGGAATGGTAGATGTTTTGAAAATAGATACAATTCCATTCACAAGGTCAAATGGAATTGTATAGTATCCTTACCTTTTTGGTGTAAACAGTTGTGTATAGTAGATACAGACCAGATTGTAGATTTGATAGGAAGCTTGTAACTAACACTTTTTGGTGGAGACAAGCATGCCCTTAATGCTGAAGAATACAATCTTACCAGTTTCAAAAAAACAAAAAAAAAAAGAAATAAACCTTAGACCTAACACAGTCCCCAAAGCTAGTTCATGAGATGAGGATTCCCCAAGATCATAAAAGGAGACATAATCCCATCCCAAAACTATATCAGACTCTTAGCACTCACACTCGCAATAGTGGACATTTGGAGCTTGGATAATAGAACATGGGTACCCGACATCAGGTAAACGAAGAATTGGAATGGGTCTGGCTCACCTAACTCAACCCTATAAGTCAGCTAATGAGGTAAGGATTGCCCAATACCATATAAAGAGGCAAATATTCCATTCCATATCAATGTGGGACCCTATCAAACAGTTTGTGTTAGCACATAATACACCTCCAGTAGTCTTACCTCTGAAAGTTATGATGTTTATCTACATTTATTGGTTTGCTATTCCCATCATCCCAATATGAGGGTGTTTTATAAAGACTTTGAAACTTGTGTAAAACATGCCAGACATTTATGTGGCTATAAATCACTTCATTAAGGGTAAAATGATTTTTTTAAAAGTTAAATTGTATCTAAATAATTGGTAGTAGAGGGTCAAACGAAAACTGGTGGGTGACGATTCCAGCATGTATCTGGTGGACACTAAGGAAGTAAAGGAATGCCAGATGTTTTGAAGAGTAGCAACATTCAGAGATAAAGCGTCAGAGTCTTAGTTTGCTGTATTTTTGGTGTTAACAAGAGTTGGGGATATAGTAGCACTAGTTGGCTTCATATGTAACTTGTAAAGTTCTTCTATTTTTGCAATTCTTAGATTCTTCCTCATCGTTTCTTGGATGATGAGTTTTTTGTGAATACAAAGTTACCATTGTCTCCAAAAAAAATTGCATCTAATATAAAAAGGTTCTTCTTTTTGGGACACTAAAAAGGGAAGTGTCACATATATGGAGTATTATATTTGGTTATTGTGAGGTTCATTCTTATTGTAGCTTTAAGTTCTTGGATCTTAAATCATGTTTATTTGATGGTTGTCGCACTGTTGAAATGCATGCTATTACAGATTCCGTACA-CCTCGGAAAATGTTGTTGAAGGCAAAACAGCAG-CCAAGGAAGCTTTGCAGCAAAAACTTGGACTGAAACAGGCTGACCTTCCTTTGGTAGGAATTATCACCCGCTTAACTCACCAGAAAGGAATCCACCTCATTAAACATGCAATTTGGCGTA</genome_strand>
        <mrna_strand>CCCTTTATTTTGGAGCCTCAAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGGAAAGGCTTCGTATATGGTTGTAGCAATGACGGTGAACGATTTGGTTTCTTCTGTCACGCGGCTTTGGAGTTCCTTCTGCAAGGTGGATTTAGTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATTCATTGCCATGATTGGGCTAGTGCTCCTGTTGCTTGGCTCTTTAAGGAACAATATACACACTATGGTCTAAGCAAATCTCGTATAGTCTTCACGATACATAATCTTGAATTTGGGGCAGATCTCATTGGGAGAGCAATGACTCATGCAGACAAAGCTACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCAACTTACTCACAGGAGGTGTCTGGAAACCCTGTAATTGCACCTCACCTTCGGGGGGTCCATGGTATAGTGAATGGGATTGACCCAGATATTTGGGATCCTTTAAATGATAAGTTCCTTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGTACACCCTCGGAAAATGTTGTTGAAGGCAAAACAGCAGCCCAAGGAAGCTTTGCAGAAAAAGCTTGGATTGAAACAGGCTGACCTTCCTTTGGCTGGAATTATCACCCGCTTAACTCACCAGAAGGGAATCCACCTCATTAAACATGCAATTTGGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693456" ref_strand="+" ref_description="SGN-E693456 [LH_Ea01F22](-)">
      <seq>agaaaaagcttggattgaaacaggctgaccttcctttggttggaattatcacccgcttaactcaccagaagggaatccacctcattaaacatgcaatttggcgtaccttggaacggaacggacaggtagtcttgcttggttctgctcctgatcctaggatacaaaacgattttgttaatttggcaaatcaattgcactccacatataatgaccgcgtacgactctgtctaacatatgacgagccactttctcacctgatatatgctggtgctgatttcattctagttccttcaatatttgagccatgtggactaacacaacttactgctatgagatatggttcaattccagtcgtgcgtaaaactggaggactttatgatcctgtatttgatgttgaccatgacaaaaagagagcacaccagtgtggtcttggaccaaatggattcagctttgatggagcagatgctgccggagttgattatgctctgaatagagctctctctgcttggtacgatggtcgaggttggttcaactctttatgcaagcaggttatggaacaagattggtcttggaaccgacctgctcttgattatttggagctttaccatgctgctagaaagttaacgtagttagtttgtgagatagtagcagaaagattcacgagatctgcagtctgtacaggttcagtgtttgcgtctggacaaatgtttatgtcctatatcaaagtataaatcctgtctcctaaagggtcaatagcagacagtactcagttcattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="29586" stop="34871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29886" g_stop="30010" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30011" i_stop="30416" i_length="406">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30417" g_stop="30548" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="257" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30549" i_stop="30642" i_length="94">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30643" g_stop="30754" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="369" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30755" i_stop="32047" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32048" g_stop="32171" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="493" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32172" i_stop="34298" i_length="2127">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34299" g_stop="34578" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="773" r_length="280" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="778" polyA_stop="792"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E693456" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29886" e_stop="30010"/>
          <exon e_start="30417" e_stop="30548"/>
          <exon e_start="30643" e_stop="30754"/>
          <exon e_start="32048" e_stop="32171"/>
          <exon e_start="34299" e_stop="34578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAAACTTGGACTGAAACAGGCTGACCTTCCTTTGGTAGGAATTATCACCCGCTTAACTCACCAGAAAGGAATCCACCTCATTAAACATGCAATTTGGCGTACCTTGGAACGGAACGGACAGGTATTTTCTCTGAAGGTGTTCTTAAGTTCTCAGATCCCCCCTTCTTCTTCTCTTTTGCTTGGGGGAGGGGGGGACTATGGGGAACATACTCATCTTCAGCTTTTGGCTGGTCGAGATGTTGCTATATGCTCTGATAATAACTAGTGTAATTTTTTTTTTAAAAATCATTTGGTTTCGGATGTCATGTCTAGTTTGTATATAGTAACTGATTACTGATCTAAGATGCCAGAGAGTACCTGTTTATTATTTTTTACTTTAAAAAATCCAGAGAACACCAGCTCTTGAATGTTTTCGTTACCAATTTTTGCATCTTGTTCTCTCAAGTCTTATTCTTAATGGAGTCCCATTTTAGAAAGTCTATTTTAGCAGAATGGTATGATCTTCTATTGACAAAAAGCTCTGACAGGTAGTCTTGCTTGGTTCTGCTCCTGATCCTAGGATACAAAACGATTTTGTTAATTTGGCAAATCAATTGCACTCCACATATAATGACCGCGCACGACTCTGTCTAACATATGACGAGCCACTCTCTCACCTGGTATTGTTTCTCCTTTCCTTGCTTGTTGCATATTTTTGTCTTCAAGCCTTATGTGTACCTTTTTATTATATCATTCCTTTTGATACAATTGCAGATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATATTTGAGCCATGTGGACTAACACAACTTACTGCTATGAGATATGGTTCAATTCCAGTCGTGCGTAAAACTGGAGGTACCTTTTTCTTATGACCTATATTTTTAGAAATTTGAATATCTTTCCATGGTGCTGCTTGCTTAGTACCTCTCTGCCACTTGCACTGTATGCTCAGATATGAAGGTAGAGCAACTCACTCTAGCGAAGTTTCTCTCTCTCATGACCATAATGTTCCCTTTTTTTAATGATGTGACCATCTTTTTGGAACTACAGGTGCATATATATGAATGACTATTTTTGATTTGGTTGAGCCATAATTAAATAATAGCGCCTTTTTTCAAAAAACTTACTTTCAGATGAGGTAGTTACACAATTCAACATGGTGGCAAAGTTGATAGAGCTTTTGGGATCATGTTCCACTACTACCCATTAAACAAAAATAAAGTTTAGTATCACCCATTATCAAAAATCAGAAGGTATCTCTGCATGCTTGGACCATCAGACCCTCATGTATGAGAACAACATTATAACCATAATTCATAAAATATTACTTAATAAAAGAAGACAATAATTCCTTATTAAGAATAAAAAGAGACGGTAATTAATTAAAAAAAACTGTTTTCCCCTAACAATTTTTAAGCTTTTAGATGTGGAGATTACTGTTATGGTCCCCTGTTATGGATCTAATTATGGGACGCTGCAAGATAAAATCTAAAGTTCTCTTTTTTCTACCTATAGTGCTGGTTCATTAAGCTGCGATCTCTTGAGTTTGAAGTACTCAAAAACTTGACTAATTTTCTGCTTAACATTTCACTGAATCAAATACATTAAATACAACACTGAAACAAGGAAAATAACTGTCTACTGCCTACTACAACTGAATGAGAAAGTGGAGAAATAACCTCCTACTGCAACAACTCCTACCTAGAAATAGGAAAAATAAATAACTAAAAAGCTGTAATAATCTACTACAAACACTGCTGGACAGAAATAAAAAATAAGTAACTTATAAGCTGAAGAATTCTACTTCCGAATTTCCTTAAATATTCCATGTGTAGACCATTGGTAGACTAAAAGGGTGCTAACAATCATCATACACTACAGCAGTTTTCAGTCTCTTGTAACATTGCAACTGCAGATATTTATGCCGATCAGAATGTTTTAATTGTAGTTTCCTCTTTTAGTAGCGAATTTACTTGATGTTTATTAGACTCACAAAAATTATTGCATTCTCTTGAATTAAGTGGGAGAACAAATATTTTTTGCACATGGTAGAATTTTCTTTTGATGCCGTTGGCTTAGTTATTATTTAGCAGATCCTAATCATTTTCTTCTGAATGTGTGTTCTAACCTCTGCATTCTGTATATTAGGACTTTATGATACTGTATTTGATGTTGACCATGACAAAGAGAGAGCACAACAGTGTGGTCTTGGACCTAATGGATTCAGCTTTGATGGAGCAGATGCTGCCGGAGTTGATTATGCTCTGAATAGGCAAGTATAGTTGCTTTGTTTCTATTAAGGTTTTTTAGTCTTTTAATTTTTAAAGGGAAACTGAAGCAAGTGTGATGGCATACACATATTGAGAGATCAAAGTCTAAAGAATGTTGCAACAGTTATATCTGAACTCTTAAAATCCTGCCCTATTTTCCCCTATTTCTTTTTCAACAACACCAGACATAAGGATCTTTTCCTCCAAATTTTCAACGTATCTCCTTAAAAGATGTGAGGACTGGACAGCCCTAGCAGACTTCTATAAACTTGCTGAGATATTGAATTTTTATCAATTCAATTTTTTAAAATTCTAATTTGAGGAAAGGAGGGATACAGGGGCGTGCTGTAACAGGGAAAGGGAGAACAATCTGGTAATCTGTCTTCAGTTTCAGAGTTTCCATTTTCTTATGCTTGCTTACAAGAGAATGAGGGAACAACTTTTTTAACAAGAGAAAATGACCAAAAGAACTATTCTGAATTTTTTTTGTACTGAAAATAACCAATTGTTTTCTGTTGAAGTCCCAAGAGGAATATGCTACTAGTAATTCTCCCCTTTCTTAGTGTTAGAGAATACACTTGTCCTTCATATACTGTGTAAGGGTTTCTTAAGGGTTTAAGGTCCTGGGGCGCTCCACCCTTTCATTGAGGTTTTGGGTTGGATGTTCATATTTATTCGCATGGTATCAGAGCCATACCCGTTCCTACTCTTTGTTTACCTAATGGATGGCCCCCTATGTTATATCGTCCACGCTCCAGATGTCCAGGACTAAGTTTACATGTCTTTTTGAGCAATTCTCGCTTTATGAGTTAACTTTTGACGTTGAATTAGGCCCTAGGTTTGTTTCATTTAAATTGGAATCAGAATTAGATCAATCGTTATCTTTGGTTTTATCCAGTTTTGTGCTCTCATGTATTGGCGTCCAGACTCCATCTATCCGACCTTGGTTGTGCGCGGGAGTGGGATGTGTGTGTTTGCGTGTGTGTTAAGTGTCCATACTGGTTGAGGATCTGCTTTGTCTCATTATATGGTTTTGGACATCTCATGGGCTATCTTTTGAGGGTGAGGTAGGCTTGAGGTTCATTTTCTTTACATGCTAGCATAGCATGTTGTCCTGCTCGATTTTCTCCTCATACTCTACTGCTCAGGGCTTTTCTCTCTCAAAGAAGTCCATGGAGCCACTAACAATGCTCCCTGGTGCCCCTGTCCCTTCCCTCTCATTGGCCTGTTGGCCTAACCAGTCTCCGGATACTTTAGGCCCACTTCTGTTGAGCCTCCTCTTGAGCGTCCCTCCATAATAAAAATCTTTAGTCCATGTGTAACCCAAGAACCAAGTTACACATGTGAGAGATTCACCTTTCACTTTTCTCTTGTAAATGCCATGTGGCCTTCAAATTTACTCTCTTCCTCCTCTCGACTGAAGAAACTCCAGGAAAGCCACTGTCTTAGTGCCCCTTCTCAATGTTCCCAGATGGAGAAAGAAGAGCAGCACAAACCATCTTAAAATTAGTCGACATTCAGCTACTTCTATGAGGATCCTCCACCCAATTTATGCTATCTTTGCATCCATATGATATATATAAAGAAAATAATTAAGCCCAGTCATCGTAGCAATGATGGATTTTTCACTGTGGGCATTCAGATCGTAAGCGTCCCAGAGCTGAACTTCAATTGCAAGAATGATTTAGGAAAGCTCGATGACATTCATGGTGGAACCATCCTACGCTAGCCTTGGTGATTGCGGCACTTGGTTACTTTTATGGGAATACATTAGTTTGGCGATTTGCTTCTCATTTTCTTGTTTCATTCTTGAGAATTCGAGATCATTCGTTATTATAAGCTTTTTCACGGGGAGACGTGGGGGTGGGGGGCAGTGTGTTTGCTGTCAAATAGTAGTTAGTTTTGAAAATAGAACTGCTCAAATGTAGAAAAAAACAAACTTGTGGATAAGCATTGTTATTGGAAATGACAATATGAAGTGTGGAACTTGGAGTGAATTGCCATAACTGCGGGTGGATATATTATTTTTCTTTGCACCATGTTTTTCCATCTTATGCAAACCCTAAGATGCATACTTCCTTCCCCTTCTCCTCGTTTGTTGATATCTCACTTACGGTTCTGTGTTTCAGAGCTCTCTCTGCTTGGTACGATGGTCGAGATTGGTTCAACTCTTTATGCAAGCAGGTTATGGAACAAGATTGGTCTTGGAACCGACCTGCTCTTGATTATTTGGAGCTTTACCATGCTGCTAGAAAGTTAACGTAGTTAGTTTGTGAGATAGTAGCAGAAAGATTCACGAGATCTGCAGTCTGTACAGGTTCAGTGTTTGCGTCTGGACTGCTTTTTATGTCCTATAACAAAGTATAAATCCTGTCTACCCTGAGATCGATAGCAGACAGTACTCAGTTC</genome_strand>
        <mrna_strand>AGAAAAAGCTTGGATTGAAACAGGCTGACCTTCCTTTGGTTGGAATTATCACCCGCTTAACTCACCAGAAGGGAATCCACCTCATTAAACATGCAATTTGGCGTACCTTGGAACGGAACGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTCTTGCTTGGTTCTGCTCCTGATCCTAGGATACAAAACGATTTTGTTAATTTGGCAAATCAATTGCACTCCACATATAATGACCGCGTACGACTCTGTCTAACATATGACGAGCCACTTTCTCACCTG..............................................................................................ATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATATTTGAGCCATGTGGACTAACACAACTTACTGCTATGAGATATGGTTCAATTCCAGTCGTGCGTAAAACTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTATGATCCTGTATTTGATGTTGACCATGACAAAAAGAGAGCACACCAGTGTGGTCTTGGACCAAATGGATTCAGCTTTGATGGAGCAGATGCTGCCGGAGTTGATTATGCTCTGAATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTCTCTGCTTGGTACGATGGTCGAGGTTGGTTCAACTCTTTATGCAAGCAGGTTATGGAACAAGATTGGTCTTGGAACCGACCTGCTCTTGATTATTTGGAGCTTTACCATGCTGCTAGAAAGTTAACGTAGTTAGTTTGTGAGATAGTAGCAGAAAGATTCACGAGATCTGCAGTCTGTACAGGTTCAGTGTTTGCGTCTGGACAAATGTTTATGTCCTATATCAAAGTATAAATCCTGTCTCCTAAAGGGTCAATAGCAGACAGTACTCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E540891" ref_strand="+" ref_description="SGN-E540891 [TUS-61-G10]">
      <seq>caaaaaccaaagtcccaaactttttcattctttaagagatctaattagaaccaaagaatggatgagtttaatagcaacagaaacagaggaaaaacagagaaagatggagactttgaagaagaagatgtatggggttatgtgaatgaaagagattcatcaacagtgattcttccaagaggaaaaagtacgtcgcataagtcatcatcttcatcaagtcctgttaagattccagaatggttcaagaatagcaataacaagaaatcaagaagaagagttagtactatcataacagaggatgattcttctttctcatcagttacttatcctggaaatgtcgtggtcgaagaagaagaagatgattatggtgatggaatagtgccaccccatgaatatatagcaagaagagtagcaaggaatcaaatagcttcattttcaatgatggaaggtgttggaaggactctcaagggaagggaccttagcaaattgaggaatgccattttaactaagacaggttttttggaatagctagctagcacctacttagtattattataagtataaactaacaaaattaggtcatccatttttcatcaatcatcacatcttattatcatttagtttagtatcataagttctcatttatgttaaagtatgggccttctatttttagctcagagatgcaatttttgggattttttctttattggaagaaaaaagaaagcaggctctgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="38183" stop="39517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38483" g_stop="39217" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E540891" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38483" e_stop="39217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACCAAAGTCCCAAACTTTTTCATTCTTTAAGAGATCTAATTAGAACCAAAGAATGGATGAGTTTAATAGCAACAGAAACAGAGGAAAAACAGAGAAAGATGGAGACTTTGAAGAAGAAGATGTATGGGGTTATGTGAATGAAAGAGATTCATCAACAGTGATTCTTCCAAGAGGAAAAAGTACGTCGCATAAGTCATCATCTTCATCAAGTCCTGTTAAGATTCCAGAATGGTTCAAGAATAGCAATAACAAGAAATCAAGAAGAAGAGTTAGTACTATCATAACAGAGGATGATTCTTCTTTCTCATCAGTTACTTATCCTGGAAATGTCGTGGTCGAAGAAGAAGAAGATGATTATGGTGATGGAATAGTGCCACCCCATGAATATATAGCAAGAAGAGTAGCAAGGAATCAAATAGCTTCATTTTCAATGATGGAAGGTGTTGGAAGGACTCTCAAGGGAAGGGACCTTAGCAAATTGAGGAATGCCATTTTAACTAAGACAGGTTTTTTGGAATAGCTAGCTAGCACCTACTTAGTATTATTATAAGTATAAACTAACAAAATTAGGTCATCCATTTTTCATCAATCATCACATCTTATTATCATTTAGTTTAGTATCATAAGTTCTCA-TTATGTTTAAAGTATGGCCTTCTTATTTTTAGCTCAGAGATGCAA-TTTTGGGATTTTTCTTTTATTGGAGAAAAAAAGAAAAGCAGGCTCTGGGATT</genome_strand>
        <mrna_strand>CAAAAACCAAAGTCCCAAACTTTTTCATTCTTTAAGAGATCTAATTAGAACCAAAGAATGGATGAGTTTAATAGCAACAGAAACAGAGGAAAAACAGAGAAAGATGGAGACTTTGAAGAAGAAGATGTATGGGGTTATGTGAATGAAAGAGATTCATCAACAGTGATTCTTCCAAGAGGAAAAAGTACGTCGCATAAGTCATCATCTTCATCAAGTCCTGTTAAGATTCCAGAATGGTTCAAGAATAGCAATAACAAGAAATCAAGAAGAAGAGTTAGTACTATCATAACAGAGGATGATTCTTCTTTCTCATCAGTTACTTATCCTGGAAATGTCGTGGTCGAAGAAGAAGAAGATGATTATGGTGATGGAATAGTGCCACCCCATGAATATATAGCAAGAAGAGTAGCAAGGAATCAAATAGCTTCATTTTCAATGATGGAAGGTGTTGGAAGGACTCTCAAGGGAAGGGACCTTAGCAAATTGAGGAATGCCATTTTAACTAAGACAGGTTTTTTGGAATAGCTAGCTAGCACCTACTTAGTATTATTATAAGTATAAACTAACAAAATTAGGTCATCCATTTTTCATCAATCATCACATCTTATTATCATTTAGTTTAGTATCATAAGTTCTCATTTATG-TTAAAGTATGGGCCTTCTATTTTTAGCTCAGAGATGCAATTTTTGGGATTTTTTCTTTATTGGAAGAAAAAAG-AAAGCAGGCTCTGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290671" ref_strand="+" ref_description="SGN-E290671 [cLET-10-I9]">
      <seq>aaaaaccaaagtcccaaactttttcattctttaagagatctaattagaaccaaagaatggatgagtttaatagcaacagaaacagaggaaaaacagagaaagatggagactttgaagaagaagatgtatggggttatgtgaatgaaagagattcatcaacagtgattcttccaagaggaaaaagtacgtcgcataagtcatcatcttcatcaagtcctgttaagattccagaatggttcaagaatagcaataacaagaaatcaagaagaagagttagtactatcataacagaggatgattcttctttctcatcagttacttatcctggaaatgtcgtggtcgaagaagaagaagatgattatggtgatggaatagtgccaccccatgaatatatagcaagaagagtagcaaggaatcaaatagcttcattttcaatgatggaaggtgttggaaggactctcaagggaagggaccttagcaaattgaggaatgccattttaactaagacaggttttttggaatagctagctagcacctacttagtattattataagtataaactaacaaaattaggtcatccatttttcatcaatcatcacatcttattatcatttagtttagtatcataagttctcattatgtttaaagtatggccttcttatttttagctcagagatgcaattttgggatttttcttttattggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="38184" stop="39494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38484" g_stop="39194" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E290671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38484" e_stop="39194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAAAGTCCCAAACTTTTTCATTCTTTAAGAGATCTAATTAGAACCAAAGAATGGATGAGTTTAATAGCAACAGAAACAGAGGAAAAACAGAGAAAGATGGAGACTTTGAAGAAGAAGATGTATGGGGTTATGTGAATGAAAGAGATTCATCAACAGTGATTCTTCCAAGAGGAAAAAGTACGTCGCATAAGTCATCATCTTCATCAAGTCCTGTTAAGATTCCAGAATGGTTCAAGAATAGCAATAACAAGAAATCAAGAAGAAGAGTTAGTACTATCATAACAGAGGATGATTCTTCTTTCTCATCAGTTACTTATCCTGGAAATGTCGTGGTCGAAGAAGAAGAAGATGATTATGGTGATGGAATAGTGCCACCCCATGAATATATAGCAAGAAGAGTAGCAAGGAATCAAATAGCTTCATTTTCAATGATGGAAGGTGTTGGAAGGACTCTCAAGGGAAGGGACCTTAGCAAATTGAGGAATGCCATTTTAACTAAGACAGGTTTTTTGGAATAGCTAGCTAGCACCTACTTAGTATTATTATAAGTATAAACTAACAAAATTAGGTCATCCATTTTTCATCAATCATCACATCTTATTATCATTTAGTTTAGTATCATAAGTTCTCATTATGTTTAAAGTATGGCCTTCTTATTTTTAGCTCAGAGATGCAATTTTGGGATTTTTCTTTTATTGGAGAAAA</genome_strand>
        <mrna_strand>AAAAACCAAAGTCCCAAACTTTTTCATTCTTTAAGAGATCTAATTAGAACCAAAGAATGGATGAGTTTAATAGCAACAGAAACAGAGGAAAAACAGAGAAAGATGGAGACTTTGAAGAAGAAGATGTATGGGGTTATGTGAATGAAAGAGATTCATCAACAGTGATTCTTCCAAGAGGAAAAAGTACGTCGCATAAGTCATCATCTTCATCAAGTCCTGTTAAGATTCCAGAATGGTTCAAGAATAGCAATAACAAGAAATCAAGAAGAAGAGTTAGTACTATCATAACAGAGGATGATTCTTCTTTCTCATCAGTTACTTATCCTGGAAATGTCGTGGTCGAAGAAGAAGAAGATGATTATGGTGATGGAATAGTGCCACCCCATGAATATATAGCAAGAAGAGTAGCAAGGAATCAAATAGCTTCATTTTCAATGATGGAAGGTGTTGGAAGGACTCTCAAGGGAAGGGACCTTAGCAAATTGAGGAATGCCATTTTAACTAAGACAGGTTTTTTGGAATAGCTAGCTAGCACCTACTTAGTATTATTATAAGTATAAACTAACAAAATTAGGTCATCCATTTTTCATCAATCATCACATCTTATTATCATTTAGTTTAGTATCATAAGTTCTCATTATGTTTAAAGTATGGCCTTCTTATTTTTAGCTCAGAGATGCAATTTTGGGATTTTTCTTTTATTGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313632" ref_strand="+" ref_description="SGN-E313632 [cTOA-12-I12]">
      <seq>tcaaaacggcaccgtgttgacctttaaagacaccgcacgacctcgtattattgatccgacaaattctcaccgaacagagttggaagcgaaacaaatacttgtaaatggagtttccttgtgaatccaaactttctccaattcattagcaataaaacctcttcaatttatcccctttagatacccagaaattgttcaaaaaccctcttcaattattcgactttcttcttttctggtaggatcaaagtttcagtcttgtcatggccaaaagttctttcaagcttgaacaccctttggagaggaggcagtcagaatcttctcgcatccgagagaagtatcctgatcgaattccggtgattgttgagaaggcagagaagagtgatgtccctgacatcgataaaaagaaataccttgtcccagctgatttgactgttggtcaatttgtttatgtggtgcggaagaagatcaagctcggtgcttcaaaggccatctttgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="47639" stop="50646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47939" g_stop="48170" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48306" g_stop="48367" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="294" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49368" g_stop="49423" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="350" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49517" g_stop="49569" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="403" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50254" g_stop="50346" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="496" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E313632" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47939" e_stop="48170"/>
          <exon e_start="48306" e_stop="48367"/>
          <exon e_start="49368" e_stop="49423"/>
          <exon e_start="49517" e_stop="49569"/>
          <exon e_start="50254" e_stop="50346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACGGCACCGTGTTGACCTTTAAAGACACCGCACGACCTCGTATTATTGATCCGACAAATTCTCACCGAACAGAGTTGGAAGCGAAACAAATACTTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTGGTACGTTTTAAAGATACCCTTTTGCGTGAATTGAACTTTTTGATGATTTCTATTGTTCATTACAATGTATATTTGTGTGTAATTTTTTAGGGTTTTCTTGGATTCTGGTGGTGTTTATCTGTCTGAATTTTGCAGGTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGGGTAATTGTTTTTCTTTCTAATTCGTTTTTTTTTTTATTGTTTTACTTATACTACAAGAAGTTTCATTGTGTGTATGGGTTCTTGTTTATGTGTCTTTCTTGAAGTTTCTTGGATGATCATAGTTTAATTATTTGTTGTTTCGACCATGCTGAAAAAATCCTACCCTTCCTAGAACCCCACTTTGTGAGATTACACCGGCAATCTAGTTGTCATGCTGAAAAACTTGATTGGGTATTGGGATCATTCCTGGGATATGTTGTCGGGTTTCTTGATATTGATACGCACTTGCCCTCTTGCATTCAAGTTGTTCGATGTTGTTAATTCTTCTGGTGATGTTTTTAGGTTTCTAAACTTGTTTGATTCTTTATATGGTGAGGCAACCATTGAGACATGAACTTTTTGGGGTGCATATATGAACTGTTTGAAGGTGCATATACGAGGTTTATCTCCCTTCATTGACATTTATACTTTCTAGTGCTTGAAGCTTGTTTTATACTTTCTAGTGCTTGAAGCTTGTATTTTTACAGTTTAATGACCTTCTCTGGGAAAAATCTCATACTTGAAGCTATTATCCTGTTATATTGGTCTATGTCATGTTTTTATTCTATCTGAGTATGGCGATATCTGGTTTGAGAATTTTGGGTTGGAAAATTATCCTTTGAGTGTTCCCTGTGGCTTGAGTCTCCAAAAAAAGTTATTCAGCATGCTCTCTTGGAACAAGCTTATTTTACATTTATGCTATTGTCATGTTAGAGTTAGCATTATTGGCTTCATTACTTTATAAATACGAAAAATGTGCTATTCTTTTGCTGAGATTTGACTTATTGGTCAAAAAAAGTTATGTATTCTTTTGAATTATAAGTTTATGTGCTCGAAGGTTATTTTTCAACTTTTCCAGATTTCTCCCGAGTGTATCCCCATTTCTTGCAAATATCAAACAAAAAAGCAAGTATTTTGTGGTGTAAATTCTGATGATTCCAAAATTTGGTTTTGGTTATAGAGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCGGTATGATCTTTGTTATCCCAAGAAATTCTTGGCATTAAGTCACACGTAGTACTCTTTGTAGCTTCTCTCTGACATTCATGTTTCCTATTTTAGGTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAAGTAAGTTGCTACTTTTCTCTTTTACTTTATTTATGCCTTAGATGTTCACTTTTTAGAATCAAGTGCTTTTCTGAGCTTTTATCCTAAGGTAATTAAATCCACAAAATCCAGTTATATTTATTGTGTTTTGGCATGTGATGTAGGTGTTGCATCATTTTGATCAACTCTTTGGTTTTTTGAAAACTGGAATATGCATGTTTTTGCTGTCTTGTTTGTCATAATTAGTCTGAGATAAGGATTTTTATCATGGGAATTCGGTGGTGGTTATACTTTATGAATGCTGCAATCTTCTCAAGATATCTTGATATTCTTCTTTCTTACCAATTTATCAGATGGGGGGAACTGTTTTTAATACCAATAACCATTAGGAGAATCGGCCACATGGGTTGGTTGGAGATGCTATGCTTTCTTGATAAATTGAAAATACAGAATTCAACTAAGGTGTTGTCCTTACTTGAGGTTCTTGTAACTAAATGATTGTATGCATGTCCTCACTTTCTTTCCATGTAGAAATGGAATTGTGTGTGGAAATTGCTGGCGAGAATGTCAAGTGTTCGTTAGTGGTCAAGGTGTTGATAGCATCCAACACTGTTGTTGTCTTTTATGGATCTAACACATGAGGATATAAGTTTGAATTGCTGTAGCTGCTCTAGTAATTCTCAATTGTCTTAACTTGTGATGCAGATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTT</genome_strand>
        <mrna_strand>TCAAAACGGCACCGTGTTGACCTTTAAAGACACCGCACGACCTCGTATTATTGATCCGACAAATTCTCACCGAACAGAGTTGGAAGCGAAACAAATACTTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTG.......................................................................................................................................GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG.............................................................................................GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAAGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237934" ref_strand="+" ref_description="SGN-E237934 [cLED-18-C24]">
      <seq>ttgtaaatggagtttccttgtgaatccaaactttctccaattcattagcaataaaacctcttcaatttatcccctttagatacccagaaattgttcaaaaaccctcttcaattattcgactttcttcttttctggtaggatcaaagtttcagtcttgtcatggccaaaagttctttcaagcttgaacaccctttggagaggaggcagtcagaatcttctcgcatccgagagaagtatcctgatcgaattccggtgattgttgagaaggcagagaagagtgatgtccctgacatcgataaaaagaaataccttgtcccagctgatttgactgttggtcaatttgtttatgtggtgcggaagaggatcaagctcggtgcttcaaaggccatctttgtctttggcaagaacactttgcctccaacagcttctctgatgtctgcaatttatgaggaaaataaagatgaagatggatttctctacatgacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="47737" stop="50810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48037" g_stop="48170" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48306" g_stop="48367" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="196" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49368" g_stop="49423" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49517" g_stop="49569" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50254" g_stop="50372" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="424" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50373" i_stop="50444" i_length="72">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50445" g_stop="50510" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="490" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E237934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48037" e_stop="48170"/>
          <exon e_start="48306" e_stop="48367"/>
          <exon e_start="49368" e_stop="49423"/>
          <exon e_start="49517" e_stop="49569"/>
          <exon e_start="50254" e_stop="50372"/>
          <exon e_start="50445" e_stop="50510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTGGTACGTTTTAAAGATACCCTTTTGCGTGAATTGAACTTTTTGATGATTTCTATTGTTCATTACAATGTATATTTGTGTGTAATTTTTTAGGGTTTTCTTGGATTCTGGTGGTGTTTATCTGTCTGAATTTTGCAGGTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGGGTAATTGTTTTTCTTTCTAATTCGTTTTTTTTTTTATTGTTTTACTTATACTACAAGAAGTTTCATTGTGTGTATGGGTTCTTGTTTATGTGTCTTTCTTGAAGTTTCTTGGATGATCATAGTTTAATTATTTGTTGTTTCGACCATGCTGAAAAAATCCTACCCTTCCTAGAACCCCACTTTGTGAGATTACACCGGCAATCTAGTTGTCATGCTGAAAAACTTGATTGGGTATTGGGATCATTCCTGGGATATGTTGTCGGGTTTCTTGATATTGATACGCACTTGCCCTCTTGCATTCAAGTTGTTCGATGTTGTTAATTCTTCTGGTGATGTTTTTAGGTTTCTAAACTTGTTTGATTCTTTATATGGTGAGGCAACCATTGAGACATGAACTTTTTGGGGTGCATATATGAACTGTTTGAAGGTGCATATACGAGGTTTATCTCCCTTCATTGACATTTATACTTTCTAGTGCTTGAAGCTTGTTTTATACTTTCTAGTGCTTGAAGCTTGTATTTTTACAGTTTAATGACCTTCTCTGGGAAAAATCTCATACTTGAAGCTATTATCCTGTTATATTGGTCTATGTCATGTTTTTATTCTATCTGAGTATGGCGATATCTGGTTTGAGAATTTTGGGTTGGAAAATTATCCTTTGAGTGTTCCCTGTGGCTTGAGTCTCCAAAAAAAGTTATTCAGCATGCTCTCTTGGAACAAGCTTATTTTACATTTATGCTATTGTCATGTTAGAGTTAGCATTATTGGCTTCATTACTTTATAAATACGAAAAATGTGCTATTCTTTTGCTGAGATTTGACTTATTGGTCAAAAAAAGTTATGTATTCTTTTGAATTATAAGTTTATGTGCTCGAAGGTTATTTTTCAACTTTTCCAGATTTCTCCCGAGTGTATCCCCATTTCTTGCAAATATCAAACAAAAAAGCAAGTATTTTGTGGTGTAAATTCTGATGATTCCAAAATTTGGTTTTGGTTATAGAGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCGGTATGATCTTTGTTATCCCAAGAAATTCTTGGCATTAAGTCACACGTAGTACTCTTTGTAGCTTCTCTCTGACATTCATGTTTCCTATTTTAGGTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAAGTAAGTTGCTACTTTTCTCTTTTACTTTATTTATGCCTTAGATGTTCACTTTTTAGAATCAAGTGCTTTTCTGAGCTTTTATCCTAAGGTAATTAAATCCACAAAATCCAGTTATATTTATTGTGTTTTGGCATGTGATGTAGGTGTTGCATCATTTTGATCAACTCTTTGGTTTTTTGAAAACTGGAATATGCATGTTTTTGCTGTCTTGTTTGTCATAATTAGTCTGAGATAAGGATTTTTATCATGGGAATTCGGTGGTGGTTATACTTTATGAATGCTGCAATCTTCTCAAGATATCTTGATATTCTTCTTTCTTACCAATTTATCAGATGGGGGGAACTGTTTTTAATACCAATAACCATTAGGAGAATCGGCCACATGGGTTGGTTGGAGATGCTATGCTTTCTTGATAAATTGAAAATACAGAATTCAACTAAGGTGTTGTCCTTACTTGAGGTTCTTGTAACTAAATGATTGTATGCATGTCCTCACTTTCTTTCCATGTAGAAATGGAATTGTGTGTGGAAATTGCTGGCGAGAATGTCAAGTGTTCGTTAGTGGTCAAGGTGTTGATAGCATCCAACACTGTTGTTGTCTTTTATGGATCTAACACATGAGGATATAAGTTTGAATTGCTGTAGCTGCTCTAGTAATTCTCAATTGTCTTAACTTGTGATGCAGATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAGGTAAGCAGAGAGATGGTGTTATTTCATTTACTGGTTAGGATTGTTGTATAATTACATCTTCTTTCTTTTCAGCTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACA</genome_strand>
        <mrna_strand>TTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTG.......................................................................................................................................GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG.............................................................................................GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGGCAAGAACACTTTGCCTCCAACAG........................................................................CTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235894" ref_strand="+" ref_description="SGN-E235894 [cLED-16-E10]">
      <seq>ttgtaaatggagtttccttgtgaatccaaactttctccaattcattagcaataaaacctcttcaatttatcccctttagatacccagaaattgttcaaaaaccctcttcaattattcgactttcttcttttctggtaggatcaaagtttcagtcttgtcatggccaaaagttctttcaagcttgaacaccctttggagaggaggcagtcagaatcttctcgcatccgagagaagtatcctgatcgaattccggtgattgttgagaaggcagagaagagtgatgtccctgacatcgataaaaagaaataccttgtcccagctgatttgactgttggtcaatttgtttatgtggtgcggaagaggatcaagctcggtgcttcaaaggccatctttgtctttgtcaagaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="47737" stop="50659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48037" g_stop="48170" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48306" g_stop="48367" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="196" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49368" g_stop="49423" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49517" g_stop="49569" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50254" g_stop="50359" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="411" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E235894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48037" e_stop="48170"/>
          <exon e_start="48306" e_stop="48367"/>
          <exon e_start="49368" e_stop="49423"/>
          <exon e_start="49517" e_stop="49569"/>
          <exon e_start="50254" e_stop="50359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTGGTACGTTTTAAAGATACCCTTTTGCGTGAATTGAACTTTTTGATGATTTCTATTGTTCATTACAATGTATATTTGTGTGTAATTTTTTAGGGTTTTCTTGGATTCTGGTGGTGTTTATCTGTCTGAATTTTGCAGGTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGGGTAATTGTTTTTCTTTCTAATTCGTTTTTTTTTTTATTGTTTTACTTATACTACAAGAAGTTTCATTGTGTGTATGGGTTCTTGTTTATGTGTCTTTCTTGAAGTTTCTTGGATGATCATAGTTTAATTATTTGTTGTTTCGACCATGCTGAAAAAATCCTACCCTTCCTAGAACCCCACTTTGTGAGATTACACCGGCAATCTAGTTGTCATGCTGAAAAACTTGATTGGGTATTGGGATCATTCCTGGGATATGTTGTCGGGTTTCTTGATATTGATACGCACTTGCCCTCTTGCATTCAAGTTGTTCGATGTTGTTAATTCTTCTGGTGATGTTTTTAGGTTTCTAAACTTGTTTGATTCTTTATATGGTGAGGCAACCATTGAGACATGAACTTTTTGGGGTGCATATATGAACTGTTTGAAGGTGCATATACGAGGTTTATCTCCCTTCATTGACATTTATACTTTCTAGTGCTTGAAGCTTGTTTTATACTTTCTAGTGCTTGAAGCTTGTATTTTTACAGTTTAATGACCTTCTCTGGGAAAAATCTCATACTTGAAGCTATTATCCTGTTATATTGGTCTATGTCATGTTTTTATTCTATCTGAGTATGGCGATATCTGGTTTGAGAATTTTGGGTTGGAAAATTATCCTTTGAGTGTTCCCTGTGGCTTGAGTCTCCAAAAAAAGTTATTCAGCATGCTCTCTTGGAACAAGCTTATTTTACATTTATGCTATTGTCATGTTAGAGTTAGCATTATTGGCTTCATTACTTTATAAATACGAAAAATGTGCTATTCTTTTGCTGAGATTTGACTTATTGGTCAAAAAAAGTTATGTATTCTTTTGAATTATAAGTTTATGTGCTCGAAGGTTATTTTTCAACTTTTCCAGATTTCTCCCGAGTGTATCCCCATTTCTTGCAAATATCAAACAAAAAAGCAAGTATTTTGTGGTGTAAATTCTGATGATTCCAAAATTTGGTTTTGGTTATAGAGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCGGTATGATCTTTGTTATCCCAAGAAATTCTTGGCATTAAGTCACACGTAGTACTCTTTGTAGCTTCTCTCTGACATTCATGTTTCCTATTTTAGGTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAAGTAAGTTGCTACTTTTCTCTTTTACTTTATTTATGCCTTAGATGTTCACTTTTTAGAATCAAGTGCTTTTCTGAGCTTTTATCCTAAGGTAATTAAATCCACAAAATCCAGTTATATTTATTGTGTTTTGGCATGTGATGTAGGTGTTGCATCATTTTGATCAACTCTTTGGTTTTTTGAAAACTGGAATATGCATGTTTTTGCTGTCTTGTTTGTCATAATTAGTCTGAGATAAGGATTTTTATCATGGGAATTCGGTGGTGGTTATACTTTATGAATGCTGCAATCTTCTCAAGATATCTTGATATTCTTCTTTCTTACCAATTTATCAGATGGGGGGAACTGTTTTTAATACCAATAACCATTAGGAGAATCGGCCACATGGGTTGGTTGGAGATGCTATGCTTTCTTGATAAATTGAAAATACAGAATTCAACTAAGGTGTTGTCCTTACTTGAGGTTCTTGTAACTAAATGATTGTATGCATGTCCTCACTTTCTTTCCATGTAGAAATGGAATTGTGTGTGGAAATTGCTGGCGAGAATGTCAAGTGTTCGTTAGTGGTCAAGGTGTTGATAGCATCCAACACTGTTGTTGTCTTTTATGGATCTAACACATGAGGATATAAGTTTGAATTGCTGTAGCTGCTCTAGTAATTCTCAATTGTCTTAACTTGTGATGCAGATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACT</genome_strand>
        <mrna_strand>TTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTG.......................................................................................................................................GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG.............................................................................................GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275194" ref_strand="+" ref_description="SGN-E275194 [cLEN-9-P6]">
      <seq>attcattagcaataaaacctcttcaatttatcccctttagatacccagaaattgttcaaaaaccctcttcaattattcgactttcttcttttctggtaggatcaaagtttcagtcttgtcatggccaaaagttctttcaagcttgaacaccctttggagaggaggcagtcagaatcttctcgcatccgagagaagtatcctgatcgaattccggtgattgttgagaaggcagagaagagtgatgtccctgacatcgataaaaagaaataccttgtcccagctgatttgactgttggtcaatttgtttatgtggtgcggaagaggatcaagctcggtgcttcaaaggccatctttgtctttgtcaagaacactttgcctccaacagcttctctgatgtctgcaatttatgaggaaaataaagatgaagatggatttctctacatgacatacagtggagaaaacacatttgggttcgttgagcttggaaattaatatctcaaatgtaaatctgacatttccttgatctcatcatgaacagttaactgtagttgttggtttgcattccacataaaatcaaatttatattcctctttggaatatccttataacttacagatgttcaactcttgatctcttatcttatagtgcctttcgtttaaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="47776" stop="51023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48076" g_stop="48170" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48306" g_stop="48367" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="157" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49368" g_stop="49423" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="213" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49517" g_stop="49569" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="266" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50254" g_stop="50372" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="385" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50373" i_stop="50444" i_length="72">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50445" g_stop="50723" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="664" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="677"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E275194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48076" e_stop="48170"/>
          <exon e_start="48306" e_stop="48367"/>
          <exon e_start="49368" e_stop="49423"/>
          <exon e_start="49517" e_stop="49569"/>
          <exon e_start="50254" e_stop="50372"/>
          <exon e_start="50445" e_stop="50723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTGGTACGTTTTAAAGATACCCTTTTGCGTGAATTGAACTTTTTGATGATTTCTATTGTTCATTACAATGTATATTTGTGTGTAATTTTTTAGGGTTTTCTTGGATTCTGGTGGTGTTTATCTGTCTGAATTTTGCAGGTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGGGTAATTGTTTTTCTTTCTAATTCGTTTTTTTTTTTATTGTTTTACTTATACTACAAGAAGTTTCATTGTGTGTATGGGTTCTTGTTTATGTGTCTTTCTTGAAGTTTCTTGGATGATCATAGTTTAATTATTTGTTGTTTCGACCATGCTGAAAAAATCCTACCCTTCCTAGAACCCCACTTTGTGAGATTACACCGGCAATCTAGTTGTCATGCTGAAAAACTTGATTGGGTATTGGGATCATTCCTGGGATATGTTGTCGGGTTTCTTGATATTGATACGCACTTGCCCTCTTGCATTCAAGTTGTTCGATGTTGTTAATTCTTCTGGTGATGTTTTTAGGTTTCTAAACTTGTTTGATTCTTTATATGGTGAGGCAACCATTGAGACATGAACTTTTTGGGGTGCATATATGAACTGTTTGAAGGTGCATATACGAGGTTTATCTCCCTTCATTGACATTTATACTTTCTAGTGCTTGAAGCTTGTTTTATACTTTCTAGTGCTTGAAGCTTGTATTTTTACAGTTTAATGACCTTCTCTGGGAAAAATCTCATACTTGAAGCTATTATCCTGTTATATTGGTCTATGTCATGTTTTTATTCTATCTGAGTATGGCGATATCTGGTTTGAGAATTTTGGGTTGGAAAATTATCCTTTGAGTGTTCCCTGTGGCTTGAGTCTCCAAAAAAAGTTATTCAGCATGCTCTCTTGGAACAAGCTTATTTTACATTTATGCTATTGTCATGTTAGAGTTAGCATTATTGGCTTCATTACTTTATAAATACGAAAAATGTGCTATTCTTTTGCTGAGATTTGACTTATTGGTCAAAAAAAGTTATGTATTCTTTTGAATTATAAGTTTATGTGCTCGAAGGTTATTTTTCAACTTTTCCAGATTTCTCCCGAGTGTATCCCCATTTCTTGCAAATATCAAACAAAAAAGCAAGTATTTTGTGGTGTAAATTCTGATGATTCCAAAATTTGGTTTTGGTTATAGAGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCGGTATGATCTTTGTTATCCCAAGAAATTCTTGGCATTAAGTCACACGTAGTACTCTTTGTAGCTTCTCTCTGACATTCATGTTTCCTATTTTAGGTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAAGTAAGTTGCTACTTTTCTCTTTTACTTTATTTATGCCTTAGATGTTCACTTTTTAGAATCAAGTGCTTTTCTGAGCTTTTATCCTAAGGTAATTAAATCCACAAAATCCAGTTATATTTATTGTGTTTTGGCATGTGATGTAGGTGTTGCATCATTTTGATCAACTCTTTGGTTTTTTGAAAACTGGAATATGCATGTTTTTGCTGTCTTGTTTGTCATAATTAGTCTGAGATAAGGATTTTTATCATGGGAATTCGGTGGTGGTTATACTTTATGAATGCTGCAATCTTCTCAAGATATCTTGATATTCTTCTTTCTTACCAATTTATCAGATGGGGGGAACTGTTTTTAATACCAATAACCATTAGGAGAATCGGCCACATGGGTTGGTTGGAGATGCTATGCTTTCTTGATAAATTGAAAATACAGAATTCAACTAAGGTGTTGTCCTTACTTGAGGTTCTTGTAACTAAATGATTGTATGCATGTCCTCACTTTCTTTCCATGTAGAAATGGAATTGTGTGTGGAAATTGCTGGCGAGAATGTCAAGTGTTCGTTAGTGGTCAAGGTGTTGATAGCATCCAACACTGTTGTTGTCTTTTATGGATCTAACACATGAGGATATAAGTTTGAATTGCTGTAGCTGCTCTAGTAATTCTCAATTGTCTTAACTTGTGATGCAGATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAGGTAAGCAGAGAGATGGTGTTATTTCATTTACTGGTTAGGATTGTTGTATAATTACATCTTCTTTCTTTTCAGCTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACAGTTAACTGTAGTTGTTGGTTTGCATTCCACATAAAATCAAATTTATATTCCTCTTTGGAATATCCTTATAACTTACAGATGTTCAACTCTTGATCTCTTATCTTATAGTGCCTTTCGTTTAAATCAA</genome_strand>
        <mrna_strand>ATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTG.......................................................................................................................................GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG.............................................................................................GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAG........................................................................CTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACAGTTAACTGTAGTTGTTGGTTTGCATTCCACATAAAATCAAATTTATATTCCTCTTTGGAATATCCTTATAACTTACAGATGTTCAACTCTTGATCTCTTATCTTATAGTGCCTTTCGTTTAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275164" ref_strand="+" ref_description="SGN-E275164 [cLEN-9-D22]">
      <seq>attcattagcaataaaacctcttcaatttatcccctttagatacccagaaattgttcaaaaaccctcttcaattattcgactttcttcttttctggtaggatcaaagtttcagtcttgtcatggccaaaagttctttcaagcttgaacaccctttggagaggaggcagtcagaatcttctcgcatccgagagaagtatcctgatcgaattccggtgattgttgagaaggcagagaagagtgatgtccctgacatcgataaaaagaaataccttgtcccagctgatttgactgttggtcaatttgtttatgtggtgcggaagaggatcaagctcggtgcttcaaaggccatctttgtctttgtcaagaacactttgcctccaacagcttctctgatgtctgcaatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="47776" stop="50768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48076" g_stop="48170" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48306" g_stop="48367" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="157" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49368" g_stop="49423" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="213" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49517" g_stop="49569" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="266" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50254" g_stop="50372" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="385" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50373" i_stop="50444" i_length="72">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50445" g_stop="50468" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="409" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E275164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48076" e_stop="48170"/>
          <exon e_start="48306" e_stop="48367"/>
          <exon e_start="49368" e_stop="49423"/>
          <exon e_start="49517" e_stop="49569"/>
          <exon e_start="50254" e_stop="50372"/>
          <exon e_start="50445" e_stop="50468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTGGTACGTTTTAAAGATACCCTTTTGCGTGAATTGAACTTTTTGATGATTTCTATTGTTCATTACAATGTATATTTGTGTGTAATTTTTTAGGGTTTTCTTGGATTCTGGTGGTGTTTATCTGTCTGAATTTTGCAGGTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGGGTAATTGTTTTTCTTTCTAATTCGTTTTTTTTTTTATTGTTTTACTTATACTACAAGAAGTTTCATTGTGTGTATGGGTTCTTGTTTATGTGTCTTTCTTGAAGTTTCTTGGATGATCATAGTTTAATTATTTGTTGTTTCGACCATGCTGAAAAAATCCTACCCTTCCTAGAACCCCACTTTGTGAGATTACACCGGCAATCTAGTTGTCATGCTGAAAAACTTGATTGGGTATTGGGATCATTCCTGGGATATGTTGTCGGGTTTCTTGATATTGATACGCACTTGCCCTCTTGCATTCAAGTTGTTCGATGTTGTTAATTCTTCTGGTGATGTTTTTAGGTTTCTAAACTTGTTTGATTCTTTATATGGTGAGGCAACCATTGAGACATGAACTTTTTGGGGTGCATATATGAACTGTTTGAAGGTGCATATACGAGGTTTATCTCCCTTCATTGACATTTATACTTTCTAGTGCTTGAAGCTTGTTTTATACTTTCTAGTGCTTGAAGCTTGTATTTTTACAGTTTAATGACCTTCTCTGGGAAAAATCTCATACTTGAAGCTATTATCCTGTTATATTGGTCTATGTCATGTTTTTATTCTATCTGAGTATGGCGATATCTGGTTTGAGAATTTTGGGTTGGAAAATTATCCTTTGAGTGTTCCCTGTGGCTTGAGTCTCCAAAAAAAGTTATTCAGCATGCTCTCTTGGAACAAGCTTATTTTACATTTATGCTATTGTCATGTTAGAGTTAGCATTATTGGCTTCATTACTTTATAAATACGAAAAATGTGCTATTCTTTTGCTGAGATTTGACTTATTGGTCAAAAAAAGTTATGTATTCTTTTGAATTATAAGTTTATGTGCTCGAAGGTTATTTTTCAACTTTTCCAGATTTCTCCCGAGTGTATCCCCATTTCTTGCAAATATCAAACAAAAAAGCAAGTATTTTGTGGTGTAAATTCTGATGATTCCAAAATTTGGTTTTGGTTATAGAGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCGGTATGATCTTTGTTATCCCAAGAAATTCTTGGCATTAAGTCACACGTAGTACTCTTTGTAGCTTCTCTCTGACATTCATGTTTCCTATTTTAGGTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAAGTAAGTTGCTACTTTTCTCTTTTACTTTATTTATGCCTTAGATGTTCACTTTTTAGAATCAAGTGCTTTTCTGAGCTTTTATCCTAAGGTAATTAAATCCACAAAATCCAGTTATATTTATTGTGTTTTGGCATGTGATGTAGGTGTTGCATCATTTTGATCAACTCTTTGGTTTTTTGAAAACTGGAATATGCATGTTTTTGCTGTCTTGTTTGTCATAATTAGTCTGAGATAAGGATTTTTATCATGGGAATTCGGTGGTGGTTATACTTTATGAATGCTGCAATCTTCTCAAGATATCTTGATATTCTTCTTTCTTACCAATTTATCAGATGGGGGGAACTGTTTTTAATACCAATAACCATTAGGAGAATCGGCCACATGGGTTGGTTGGAGATGCTATGCTTTCTTGATAAATTGAAAATACAGAATTCAACTAAGGTGTTGTCCTTACTTGAGGTTCTTGTAACTAAATGATTGTATGCATGTCCTCACTTTCTTTCCATGTAGAAATGGAATTGTGTGTGGAAATTGCTGGCGAGAATGTCAAGTGTTCGTTAGTGGTCAAGGTGTTGATAGCATCCAACACTGTTGTTGTCTTTTATGGATCTAACACATGAGGATATAAGTTTGAATTGCTGTAGCTGCTCTAGTAATTCTCAATTGTCTTAACTTGTGATGCAGATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAGGTAAGCAGAGAGATGGTGTTATTTCATTTACTGGTTAGGATTGTTGTATAATTACATCTTCTTTCTTTTCAGCTTCTCTGATGTCTGCAATTTATG</genome_strand>
        <mrna_strand>ATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTG.......................................................................................................................................GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG.............................................................................................GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAG........................................................................CTTCTCTGATGTCTGCAATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282112" ref_strand="+" ref_description="SGN-E282112 [cLES-4-I5]">
      <seq>ttttctggtaggatcaaagtttcagtcttgtcatggccaaaagttctttcaagcttgaacaccctttggagaggaggcagtcagaatcttctcgcatccgagagaagtatcctgatcgaattccggtgattgttgagaaggcagagaagagtgatgtccctgacatcgataaaaagaaataccttgtcccagctgatttgactgttggtcaatttgtttatgtggtgcggaagaggatcaagctcggtgcttcaaaggccatctttgtctttgtcaagaacactttgcctccaacagcttctctgatgtctgcaatttatgaggaaaataaagatgaagatggatttctctacatgacatacagtggagaaaacacatttgggttcgttgagcttggaaattaatatctcaaatgtaaatctgacatttccttgatctcatcatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="47999" stop="50896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48164" g_stop="48170" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48306" g_stop="48367" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="69" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49368" g_stop="49423" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="125" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49517" g_stop="49569" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="178" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50254" g_stop="50372" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="297" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50373" i_stop="50444" i_length="72">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50445" g_stop="50596" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="449" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E282112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48164" e_stop="48170"/>
          <exon e_start="48306" e_stop="48367"/>
          <exon e_start="49368" e_stop="49423"/>
          <exon e_start="49517" e_stop="49569"/>
          <exon e_start="50254" e_stop="50372"/>
          <exon e_start="50445" e_stop="50596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTGGTACGTTTTAAAGATACCCTTTTGCGTGAATTGAACTTTTTGATGATTTCTATTGTTCATTACAATGTATATTTGTGTGTAATTTTTTAGGGTTTTCTTGGATTCTGGTGGTGTTTATCTGTCTGAATTTTGCAGGTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGGGTAATTGTTTTTCTTTCTAATTCGTTTTTTTTTTTATTGTTTTACTTATACTACAAGAAGTTTCATTGTGTGTATGGGTTCTTGTTTATGTGTCTTTCTTGAAGTTTCTTGGATGATCATAGTTTAATTATTTGTTGTTTCGACCATGCTGAAAAAATCCTACCCTTCCTAGAACCCCACTTTGTGAGATTACACCGGCAATCTAGTTGTCATGCTGAAAAACTTGATTGGGTATTGGGATCATTCCTGGGATATGTTGTCGGGTTTCTTGATATTGATACGCACTTGCCCTCTTGCATTCAAGTTGTTCGATGTTGTTAATTCTTCTGGTGATGTTTTTAGGTTTCTAAACTTGTTTGATTCTTTATATGGTGAGGCAACCATTGAGACATGAACTTTTTGGGGTGCATATATGAACTGTTTGAAGGTGCATATACGAGGTTTATCTCCCTTCATTGACATTTATACTTTCTAGTGCTTGAAGCTTGTTTTATACTTTCTAGTGCTTGAAGCTTGTATTTTTACAGTTTAATGACCTTCTCTGGGAAAAATCTCATACTTGAAGCTATTATCCTGTTATATTGGTCTATGTCATGTTTTTATTCTATCTGAGTATGGCGATATCTGGTTTGAGAATTTTGGGTTGGAAAATTATCCTTTGAGTGTTCCCTGTGGCTTGAGTCTCCAAAAAAAGTTATTCAGCATGCTCTCTTGGAACAAGCTTATTTTACATTTATGCTATTGTCATGTTAGAGTTAGCATTATTGGCTTCATTACTTTATAAATACGAAAAATGTGCTATTCTTTTGCTGAGATTTGACTTATTGGTCAAAAAAAGTTATGTATTCTTTTGAATTATAAGTTTATGTGCTCGAAGGTTATTTTTCAACTTTTCCAGATTTCTCCCGAGTGTATCCCCATTTCTTGCAAATATCAAACAAAAAAGCAAGTATTTTGTGGTGTAAATTCTGATGATTCCAAAATTTGGTTTTGGTTATAGAGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCGGTATGATCTTTGTTATCCCAAGAAATTCTTGGCATTAAGTCACACGTAGTACTCTTTGTAGCTTCTCTCTGACATTCATGTTTCCTATTTTAGGTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAAGTAAGTTGCTACTTTTCTCTTTTACTTTATTTATGCCTTAGATGTTCACTTTTTAGAATCAAGTGCTTTTCTGAGCTTTTATCCTAAGGTAATTAAATCCACAAAATCCAGTTATATTTATTGTGTTTTGGCATGTGATGTAGGTGTTGCATCATTTTGATCAACTCTTTGGTTTTTTGAAAACTGGAATATGCATGTTTTTGCTGTCTTGTTTGTCATAATTAGTCTGAGATAAGGATTTTTATCATGGGAATTCGGTGGTGGTTATACTTTATGAATGCTGCAATCTTCTCAAGATATCTTGATATTCTTCTTTCTTACCAATTTATCAGATGGGGGGAACTGTTTTTAATACCAATAACCATTAGGAGAATCGGCCACATGGGTTGGTTGGAGATGCTATGCTTTCTTGATAAATTGAAAATACAGAATTCAACTAAGGTGTTGTCCTTACTTGAGGTTCTTGTAACTAAATGATTGTATGCATGTCCTCACTTTCTTTCCATGTAGAAATGGAATTGTGTGTGGAAATTGCTGGCGAGAATGTCAAGTGTTCGTTAGTGGTCAAGGTGTTGATAGCATCCAACACTGTTGTTGTCTTTTATGGATCTAACACATGAGGATATAAGTTTGAATTGCTGTAGCTGCTCTAGTAATTCTCAATTGTCTTAACTTGTGATGCAGATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAGGTAAGCAGAGAGATGGTGTTATTTCATTTACTGGTTAGGATTGTTGTATAATTACATCTTCTTTCTTTTCAGCTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACA</genome_strand>
        <mrna_strand>TTTTCTG.......................................................................................................................................GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG.............................................................................................GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAG........................................................................CTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279881" ref_strand="-" ref_description="SGN-E279881 [cLER-8-G7]">
      <seq>tgtccctgacatcgataaaaagaaataccttgtcccagctgatttgactgttggtcaatttgtttatgtggtgcggaagaggatcaagctcggtgcttcaaaggccatctttgtctttgtcaagaacactttgcctccaacagcttctctgatgtctgcaatttatgaggaaaataaagatgaagatggatttctctacatgacatacagtggagaaaacacatttgggttcgttgagcttggaaattaatatctcaaatgtaaatctgacatttccttgatctcatcatgaacagttaactgtagttgttggtttgcattccacataaaatcaaatttatattcctctttggaatatccttataacttacagatgttcaactcttgatctcttatcttatagtgcctttcgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="49246" stop="51023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49546" g_stop="49569" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50254" g_stop="50372" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="143" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50373" i_stop="50444" i_length="72">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50445" g_stop="50723" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="422" r_length="279" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E279881" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279881" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49546" e_stop="49569"/>
          <exon e_start="50254" e_stop="50372"/>
          <exon e_start="50445" e_stop="50723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTGACATCGATAAAAAGAAGTAAGTTGCTACTTTTCTCTTTTACTTTATTTATGCCTTAGATGTTCACTTTTTAGAATCAAGTGCTTTTCTGAGCTTTTATCCTAAGGTAATTAAATCCACAAAATCCAGTTATATTTATTGTGTTTTGGCATGTGATGTAGGTGTTGCATCATTTTGATCAACTCTTTGGTTTTTTGAAAACTGGAATATGCATGTTTTTGCTGTCTTGTTTGTCATAATTAGTCTGAGATAAGGATTTTTATCATGGGAATTCGGTGGTGGTTATACTTTATGAATGCTGCAATCTTCTCAAGATATCTTGATATTCTTCTTTCTTACCAATTTATCAGATGGGGGGAACTGTTTTTAATACCAATAACCATTAGGAGAATCGGCCACATGGGTTGGTTGGAGATGCTATGCTTTCTTGATAAATTGAAAATACAGAATTCAACTAAGGTGTTGTCCTTACTTGAGGTTCTTGTAACTAAATGATTGTATGCATGTCCTCACTTTCTTTCCATGTAGAAATGGAATTGTGTGTGGAAATTGCTGGCGAGAATGTCAAGTGTTCGTTAGTGGTCAAGGTGTTGATAGCATCCAACACTGTTGTTGTCTTTTATGGATCTAACACATGAGGATATAAGTTTGAATTGCTGTAGCTGCTCTAGTAATTCTCAATTGTCTTAACTTGTGATGCAGATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAGGTAAGCAGAGAGATGGTGTTATTTCATTTACTGGTTAGGATTGTTGTATAATTACATCTTCTTTCTTTTCAGCTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACAGTTAACTGTAGTTGTTGGTTTGCATTCCACATAAAATCAAATTTATATTCCTCTTTGGAATATCCTTATAACTTACAGATGTTCAACTCTTGATCTCTTATCTTATAGTGCCTTTCGTTTAAATCAA</genome_strand>
        <mrna_strand>TGTCCCTGACATCGATAAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAG........................................................................CTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACAGTTAACTGTAGTTGTTGGTTTGCATTCCACATAAAATCAAATTTATATTCCTCTTTGGAATATCCTTATAACTTACAGATGTTCAACTCTTGATCTCTTATCTTATAGTGCCTTTCGTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732730" ref_strand="+" ref_description="SGN-E732730 [LB02DH07]">
      <seq>cgataaccttttctccaaagaagaataaataatgtttgcttcaagagaaagtaaccttgtgagttcgctagcaagtcttctataaaaggaacacacaggatttatggctagtgatggaccaagttgggcagatcaatggggtgcaggagggataggtgccatggatgaagatgacagctattataaaagcaacaaagacagtgaaaacaacaagaaagccactagttcatcttcatcaggaattggcaaagtcaaagctgtggcagtggctggtgcacagaaagtgaaaaatggtccttccatgttgatcaaatgggttaggagcaaatcccagaagaagcatccctccatttcatgaaatgaggaggatcaaggattatctaatctttatcttgccttctgtaagaggatttcagatcaaacatgtctatttatgcgttgttatgcttcctggtagtagtttgtttccgggtgagtttaaggtcatggtgtaaagaatatgtatgcaatcagattactaataaggtaattacaattgttctctctctannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="52165" stop="50864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51866" g_stop="51769" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51768" i_stop="51633" i_length="136">
            <donor d_prob="0.094" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51632" g_stop="51163" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="568" r_length="470" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E732730" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51866" e_stop="51769"/>
          <exon e_start="51632" e_stop="51163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAACCTTTTCTCCAAAGAAGAATAAATAATGTTTGCTTCAAGAGAAAGTAACCTTGTGAGTTCGCTAGCAAGTCTTCTATAAAAGGAACACACAGGTTTAAGAGACTTATCCTTGGGCGCTCCTCTTATTAGTTCTACCACTTACAAGCAGTAATAAAGTAAAATCCCCAGCCCCTTCTCTGTTTTCTCTTTTATTCTTTACAAAATCATCTTATATTGTGTTGTTGACAGGATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCTAATAGTATTAGATATCAAAG</genome_strand>
        <mrna_strand>CGATAACCTTTTCTCCAAAGAAGAATAAATAATGTTTGCTTCAAGAGAAAGTAACCTTGTGAGTTCGCTAGCAAGTCTTCTATAAAAGGAACACACAG........................................................................................................................................GATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCTANNAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733657" ref_strand="+" ref_description="SGN-E733657 [LB10CD08]">
      <seq>ctcttattagttctaccacttacaagcagtaataaagatttatggctagtgatggaccaagttgggcagatcaatggggtgcaggagggataggtgccatggatgaagatgacagctattataaaagcaacaaagacagtgaaaacaacaagaaagccactagttcatcttcatcaggaattggcaaagtcaaagctgtggcagtggctggtgcacagaaagtgaaaaatggtccttccatgttgatcaaatgggttaggagcaaatcccagaagaagcatccctccatttcatgaaatgaggaggatcaaggattatctaatctttatcttgccttctgtaagaggatttcagatcaaacatgtctatttatgcgttgttatgcttcctggtagtagtttgtttccgggtgagtttaaggtcatggtgtaaagaatatgtatgcaatcagattactaataaggtaattacaattgttctctctctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="52041" stop="50864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51741" g_stop="51706" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51705" i_stop="51633" i_length="73">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51632" g_stop="51163" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="506" r_length="470" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E733657" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51741" e_stop="51706"/>
          <exon e_start="51632" e_stop="51163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTATTAGTTCTACCACTTACAAGCAGTAATAAAGTAAAATCCCCAGCCCCTTCTCTGTTTTCTCTTTTATTCTTTACAAAATCATCTTATATTGTGTTGTTGACAGGATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCTAATAGTATTAGATATCAAAG</genome_strand>
        <mrna_strand>CTCTTATTAGTTCTACCACTTACAAGCAGTAATAAA.........................................................................GATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216663" ref_strand="+" ref_description="SGN-E216663 [cLEL-1-O3](-)">
      <seq>aattattattcccttccttcatcattgtcttcatcgtcatcttcgtggctgtcgaggagcaatagccggtcgtgttcaactagcaagctgccacaggagagctgcaatggagcacaacaggcagagccatttgcaatacctggtggatatagttggagtagttttgatgtgaaaaataggaaaatgaagaaatccaagtctactaggagaactaagtgactgtcttaatactagtaattcttttaacatttgatgtgattcgatcaactactctgttttttttctttctttctattacttgctaatttctagtatagtttgtagatattaaggagtatctaactttgaatctcctatactattgttcttggattatccattctcatagtggtcattcaactgagtctctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="53483" stop="52470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53183" g_stop="52771" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="428"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E216663" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53183" e_stop="52771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTATTCCCTTCCTTCATCATTGTCTTCATCGTCATCTTCGTGGCTGTCGAGGAGCAATAGCCGGTCGTGTTCAACTAGCAAGCTGCCACAGGAGAGCTGCAATGGAGCACAACAGGCAGAGCCATTTGCAATACCTGGTGGATATAGTTGGAGTAGTTTTGATGTGAAAAATAGGAAAATGAAGAAATCCAAGTCTACTAGGAGAACTAAGTGACTGTCTTAATACTAGTAATTCTTTTAACATTTGATGTGATTCGATCAACTACTCTGTTTTTTTTCTTTCTTTCTATTACTTGCTAATTTCTAGTATAGTTTGTAGATATTAAGGAGTATCTAACTTTGAATCTCCTATACTATTGTTCTTGGATTATCAATTCTCATAGTGGTCATTCAACTGAGTCTCTCAAA</genome_strand>
        <mrna_strand>AATTATTATTCCCTTCCTTCATCATTGTCTTCATCGTCATCTTCGTGGCTGTCGAGGAGCAATAGCCGGTCGTGTTCAACTAGCAAGCTGCCACAGGAGAGCTGCAATGGAGCACAACAGGCAGAGCCATTTGCAATACCTGGTGGATATAGTTGGAGTAGTTTTGATGTGAAAAATAGGAAAATGAAGAAATCCAAGTCTACTAGGAGAACTAAGTGACTGTCTTAATACTAGTAATTCTTTTAACATTTGATGTGATTCGATCAACTACTCTGTTTTTTTTCTTTCTTTCTATTACTTGCTAATTTCTAGTATAGTTTGTAGATATTAAGGAGTATCTAACTTTGAATCTCCTATACTATTGTTCTTGGATTATCCATTCTCATAGTGGTCATTCAACTGAGTCTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216512" ref_strand="-" ref_description="SGN-E216512 [cLEL-1-A21](-)">
      <seq>acaaagacgtcacagcagtttcactcgagaggaaagggattacgttaccgtttctcgaagaagcgttgacattattccggaaccacggcggagagcggcggcgataccggttgcaccaccgccaaatacgaaggagaaggaatatgtgaagagccttaaaccgtccgtttggttaacagaggaattcccgttgaagacggaagagttgctgccgttacttgacatattagcgaacaaagtgaaagccgttagacgaatgagagagctgttaaccaccaagttccctccggggacattttcagtcaagttggcaataccagtggtccctacagtgagggtagtaatcacattcacaaagtttgtagagttacaacccattgaacagttctacactccattttcaagtccaaggcacctcctttatggtggtgatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="54178" stop="52903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53878" g_stop="53572" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53571" i_stop="53334" i_length="238">
            <donor d_prob="0.737" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53333" g_stop="53203" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="438" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E216512" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216512" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53878" e_stop="53572"/>
          <exon e_start="53333" e_stop="53203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGACGTCACAGCAGTTTCACTCGAGAGGAAAGGGATTACGTTACCGTTTCTCGAAGAAGCGTTGACATTATTCCGGAACCACGGCGGAGAGCGGCGGCGATACCGGTTGCACCACCGCCAAATACGAAGGAGAAGGAATATGTGAAGAGCCTTAAACCGTCCGTTTGGTTAACAGAGGAATTCCCGTTGAAGACGGAAGAGTTGCTGCCGTTACTTGACATATTAGCGAACAAAGTGAAAGCCGTTAGACGAATGAGAGAGCTGTTAACCACCAAGTTCCCTCCGGGGACATTTCCAGTCAAGGTAAGGGGTAAAATTGATTTTTCACATTCGAAATTCAGAGGTCCCACGAGATTCTCATTTCTTCTGATGAAAGCTTTGATATTGTGTTTGTGTTTTTTCCCTCTTTATTTCTTCTTTTCATGCCCAAGTGTCTGTTTTGCTTCAGCTCCTTGTCACACTTTTTTTTTTTGTTTAGTGTTCAACGCAAAGAACCTTCCTGGGACCCAATTTAATTATAATTTATATTACTGATTGACAGTTGGCAATACCAGTGGTCCCTACAGTGAGGGTAGTAATCACATTCACAAAGTTTGTAGAGTTACAACCCATTGAACAGTTCTACACTCCATTTTCAAGTCCAAGGCACCTCCTTCATGGTGGTGATACTGA</genome_strand>
        <mrna_strand>ACAAAGACGTCACAGCAGTTTCACTCGAGAGGAAAGGGATTACGTTACCGTTTCTCGAAGAAGCGTTGACATTATTCCGGAACCACGGCGGAGAGCGGCGGCGATACCGGTTGCACCACCGCCAAATACGAAGGAGAAGGAATATGTGAAGAGCCTTAAACCGTCCGTTTGGTTAACAGAGGAATTCCCGTTGAAGACGGAAGAGTTGCTGCCGTTACTTGACATATTAGCGAACAAAGTGAAAGCCGTTAGACGAATGAGAGAGCTGTTAACCACCAAGTTCCCTCCGGGGACATTTTCAGTCAAG..............................................................................................................................................................................................................................................TTGGCAATACCAGTGGTCCCTACAGTGAGGGTAGTAATCACATTCACAAAGTTTGTAGAGTTACAACCCATTGAACAGTTCTACACTCCATTTTCAAGTCCAAGGCACCTCCTTTATGGTGGTGATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393278" ref_strand="+" ref_description="SGN-E393278 [TUS-38-M4]">
      <seq>atctttctagtggtcaacatgatggttcaaatgtgcgagttgcttatcagggaattccaggtgcatatagtgaggcagctgcacttaaagcatacccgaaatgtgaaactgtcccatgtgatcagtttgaggctgcatttaaggcagttgaattatggttagtagacaaagctgtactcccgattgaaaattcagttgctgggagcatccatcgtaactacgatctactccttcggcataggctgcatattgtgggagaagttcagttgcttgttaaccactgccttctgggcttgcctttattcttgaaagaggaattaaagcgcgtcgtgagccggcgtcaagcaacttaaacaatgcaacattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="66712" stop="68129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67012" g_stop="67061" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67062" i_stop="67201" i_length="140">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67202" g_stop="67294" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="143" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67295" i_stop="67383" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67384" g_stop="67584" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="344" r_length="201" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67585" i_stop="67804" i_length="220">
            <donor d_prob="0.975" d_score="0.80"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67805" g_stop="67829" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="370" r_length="26" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E393278" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67012" e_stop="67061"/>
          <exon e_start="67202" e_stop="67294"/>
          <exon e_start="67384" e_stop="67584"/>
          <exon e_start="67805" e_stop="67829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAGGTAGACAACAAAGACCTCCATGCTCTTAACTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTCTTAACTTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTTTATCTAACGTAGGGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAGGTATTTTTTTTGTAAAACCAAAGTGATTTTGTTCCTGAAGATATTTTGCATCTTTTCACACCTTTATAGTATTAGTTCTCATTTCTCAGGCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAGGTTATCGTTTCATTTCATTATTCAGAAGAATCTGATGTTTCTCCTTGTTAAACTAAAAAGATGTAGAAATTATTGGATTAGCTTTTGGGTTGAGTTAGACACGAGCTCCTTTTTGATAAATTAAAATAGAAACAGTTACTTCCTTTAGTTTTGCACATAGAATTTATATTGCTTCCATTTCTACTTGGTAAATACTAATACAACCATAACTTGCTTTCAGGC-ACTTGAACAATGCAACATTATGT</genome_strand>
        <mrna_strand>ATCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAG............................................................................................................................................GGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAG.........................................................................................GCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCTTTATTCTTGAAAGAGGAATTAAAGCGCGTCGTGAGCCGGCGTCAA............................................................................................................................................................................................................................GCAACTTAAACAATGCAACATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208855" ref_strand="+" ref_description="SGN-E208855 [cLEC-51-G4]">
      <seq>tctttctagtggtcaacatgatggttcaaatgtgcgagttgcttatcagggaattccaggtgcatatagtgaggcagctgcacttaaagcatacccgaaatgtgaaactgtcccatgtgatcagtttgaggctgcatttaaggcagttgaattatggttagtagacaaagctgtactcccgattgaaaattcagttgctgggagcatccatcgtaactacgatctactccttcggcataggctgcatattgtgggagaagttcagttgcttgttaaccactgccttctgggcttgccaggaatcaggaaagaggaattaaagcgcgtcgtgagccaccctcaggcacttgaacaatgcaacattatgttgaatgagttaggcgttgcaaggctcagtagtgatgatacttccagtgctgcacagatagtcgcatctgaagggaagagagatactggagcagttgcaagtgctcgagctgcagagatttatgggctcagcattcttgctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="66713" stop="68338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67013" g_stop="67061" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67062" i_stop="67201" i_length="140">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67202" g_stop="67294" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="142" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67295" i_stop="67383" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67384" g_stop="67584" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="343" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67585" i_stop="67804" i_length="220">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67805" g_stop="67885" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="424" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67886" i_stop="67949" i_length="64">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67950" g_stop="68038" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="513" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E208855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67013" e_stop="67061"/>
          <exon e_start="67202" e_stop="67294"/>
          <exon e_start="67384" e_stop="67584"/>
          <exon e_start="67805" e_stop="67885"/>
          <exon e_start="67950" e_stop="68038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAGGTAGACAACAAAGACCTCCATGCTCTTAACTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTCTTAACTTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTTTATCTAACGTAGGGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAGGTATTTTTTTTGTAAAACCAAAGTGATTTTGTTCCTGAAGATATTTTGCATCTTTTCACACCTTTATAGTATTAGTTCTCATTTCTCAGGCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAGGTTATCGTTTCATTTCATTATTCAGAAGAATCTGATGTTTCTCCTTGTTAAACTAAAAAGATGTAGAAATTATTGGATTAGCTTTTGGGTTGAGTTAGACACGAGCTCCTTTTTGATAAATTAAAATAGAAACAGTTACTTCCTTTAGTTTTGCACATAGAATTTATATTGCTTCCATTTCTACTTGGTAAATACTAATACAACCATAACTTGCTTTCAGGCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAGGTATTCCATTAAATTTTCTCATCCTCGGCGGGTTTTATTTCCACATTATTTGACACCTCAACAGATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAG</genome_strand>
        <mrna_strand>TCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAG............................................................................................................................................GGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAG.........................................................................................GCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAG............................................................................................................................................................................................................................GCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAG................................................................ATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692917" ref_strand="+" ref_description="SGN-E692917 [LH_Ea09P11]">
      <seq>ccggttagttgcttatcagggaattccaggtgcatatagtgaggcagctgcacttaaagcatacccgaaatgtgaaactgtcccatgtgatcagtttgaggctgcatttaaggcagttgaattatggttagtagacaaagctgtactcccgatcgaaaattcagttgctgggagcatccatcgtaactacgatctactccttcggcataggctgcatattgtgggtgaagttcagttgcttgttaaccactgccttctgggcttgccaggaatcaggaaagaggaattaaagcgcgtcgtgagccaccctcaggcacttgaacaatgcaacattatgttaaatgagttaggcgttgcaaggctcagtagtgatgatacttccagtgctgcacagataatcgcatctgaagggaagagagatactggagcagttgcaagtgctcgagctgcagagatttatgggctcagcattcttgctgaaagaattcaggatgatccagataatattaccagatttctgatactagcaagggagcccataatttcgggaactgataggccatacaagactagcattgtcttcactttggaagaaggacctggagttctattcaaggccttagcagtttttgctctgagagaaatcaacttaacaaagattgaaagccgaccacaaaaaaagcgccctttaagggtaatagatgactccaacaaaggaagtgccaagtactttgactacctcttttacattgactttgaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="66900" stop="72466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67043" g_stop="67061" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.737"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67062" i_stop="67201" i_length="140">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67202" g_stop="67294" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="112" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67295" i_stop="67383" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67384" g_stop="67584" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="313" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67585" i_stop="67804" i_length="220">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67805" g_stop="67885" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="394" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67886" i_stop="67949" i_length="64">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67950" g_stop="68045" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="490" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68046" i_stop="70016" i_length="1971">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70017" g_stop="70094" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="568" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70095" i_stop="70167" i_length="73">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70168" g_stop="70257" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="658" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70258" i_stop="70336" i_length="79">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70337" g_stop="70404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="726" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70405" i_stop="72128" i_length="1724">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="72129" g_stop="72166" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="764" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E692917" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67043" e_stop="67061"/>
          <exon e_start="67202" e_stop="67294"/>
          <exon e_start="67384" e_stop="67584"/>
          <exon e_start="67805" e_stop="67885"/>
          <exon e_start="67950" e_stop="68045"/>
          <exon e_start="70017" e_stop="70094"/>
          <exon e_start="70168" e_stop="70257"/>
          <exon e_start="70337" e_stop="70404"/>
          <exon e_start="72129" e_stop="72166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCGAGTTGCTTATCAGGTAGACAACAAAGACCTCCATGCTCTTAACTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTCTTAACTTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTTTATCTAACGTAGGGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAGGTATTTTTTTTGTAAAACCAAAGTGATTTTGTTCCTGAAGATATTTTGCATCTTTTCACACCTTTATAGTATTAGTTCTCATTTCTCAGGCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAGGTTATCGTTTCATTTCATTATTCAGAAGAATCTGATGTTTCTCCTTGTTAAACTAAAAAGATGTAGAAATTATTGGATTAGCTTTTGGGTTGAGTTAGACACGAGCTCCTTTTTGATAAATTAAAATAGAAACAGTTACTTCCTTTAGTTTTGCACATAGAATTTATATTGCTTCCATTTCTACTTGGTAAATACTAATACAACCATAACTTGCTTTCAGGCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAGGTATTCCATTAAATTTTCTCATCCTCGGCGGGTTTTATTTCCACATTATTTGACACCTCAACAGATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAGAATTCAGGTTAGGATTTTGCATTTCTAAGGTTCTCCCTTTTGTATTTACTCGATGTAACATTGCATCTTTTGAAATTGCACTTGACTGTCTTTTTAATAATTTATTTCTTGAGCCATGTCACCAACGTTGTGGGCACTCATGACTTGAGAGTATGGATATCCAGTGCGCTTACACGTTCATAAAATAACAGCATTTTCATAGTTTGCATATCGACCAATAACTTTCTAGAAGATCATCGCTTATCTTTGATATGGAAACCTATGATGGTTTCTGGTCTTTTCGTTTTTCCTCGCTGTAGTTTAATCCTATGTAAGAACTGTTACAAAATGTGATACGTAGTTTCCAGAAGGTATAGTTTGCTGACTTTGCTCACTCCTTGTCTCTATCTTCACATGGAACCATAAGCAATTTCAAGATTAAGAGCTAGCAACATGGATGGATGGATTTTTTTTATTCTTTATTCTTAATTTATGGATGGGATAGAATGATAAAAAATCAGATCATGAATAGTTATTGATTTAATCTTTGGCTTATAAAGAAACATTATACATTGTACTGCTCATTCAGACTGTAATGAGCAGCAAATACATTTCCTTTAAGGAACTTGCATGGTGTCAAAATTAGGATGTTTTCATTTTGATAAACCTAGGAAAATAAAGAATGATTTTTCAGAAGCAACTTCAACTGTGAACCAGTCTGCTAAAATATTTTATACCTGTTCGTAAGTGTTTGGGCTCAAATCCACCCATGCATGCTTCGCCTAGCTGGTTGTGAACCAGAGAAATTAGGAGTATGGTAGATCAATGGCCAGTGAAAAAATAGTTAAACCACGAAGATGGTGATTGGGGTTTGGCAAGGTTATTCCAGGATCACCAATATCTTCCTTGTCATAAACACAGCACCAATATAGGTAGTTTGGTTGCAGATAATAATGGTTCTAAGTTTTGAGTTCAAAATCATAGCTGTATTTGAAACTTTTGAGCGTCATTTTTTGCTGTGTTCTGCTGCAGGAGATTAGGGGAATATGGTACTCTTATTTCTACATGATTTTCTCCTTCCACTACTGAGTTTTTCTCTTCCTCTAATCTGCTTTGGATACTTTGAATGGAATTATGTGGATTTCAGAATATGAAGAAGAAGCCTTGGTTTGTGCAGTTACAAGATAACAATTAAAATTTGTCTGGATGGGCCAGTGTTGACAAAATAGAAAAGAACTTAAAAAAAGATGAAAGGTCTGCTGGAGCTTTAAATGCAAATAAAGCGTGAACATCAATAAAATAACCGCCAAGGGAGAAAAAAAAATATAACTGTTTAGTTTAAGGCTAAGACGACACTGAAGCACTCATTAAGCAAGATGGAAGTGCTCAACACGTTTTGAGCCTCGCTTTAGGGCTTAAGCACGTCTTTGACAATAATGGGATGGGCTAATAGAAGTTTTAGCATGATGCGTCTTTGTGTTTATTATTACGACTGCCTTATAAATCTAAGTCGGATCCTCCAAAAATGCCACTGCACACGTGTCGAATTGTAAACCTTATCCCCATCAATGAAGTTGAATAGTAACTAGTAAACTTTGAATATTTAACTAATTAAACGTAAAAGGTCGTCATAATTACACAATAATCAATAGCCATTTAACTTAATTAAATAGAAATCGAGTCAAATTATATTGTTGACCAAAACTATTACAATAATTCTGTCAAGTCCTAAAATTTATGTGATGACGAATCTGGCCTCTAGATCTACACTTGTATTGGCACCGAACATCATAGTTTATTAAGGCAGTCTGAGAATTAGTTCTCAACCATAGAAGATATTTATAAGTCTTTTCTCTGCTTTTGCGTCTTTATCAACTTGGTTCTGCTCTTGACCAAGCTGGTGCAGCTAAAAACTGCAAAGCTATTAGCCAAATATATTTGCTATAATCTGCTGTGAAACTTCAGTAATGTGATTTTTAATTGCATGACCAATAACCAGGATGATCCAGATAATATCACCAGATTTCTGATACTAGCGAGGGAGCCCATAATTTCGGGAACTGATAGGCCATATAAGGTAATATCATATTCTTCTTCATTGAACTTATTTTGTTCATACAAAGAATTGATGTTCCCTTTTCATTTTCTAGACTAGCATTGTCTTCACTTTGGAAGAAGGACCTGGAGTTCTATTCAAGGCCTTAGCAGTTTTTGCTCTGAGAGAGATCAATTTAACAAAGGTATTTCTGTTGGAAAAGCTTTTGTAGTTCCCTTCTCTAGTTAAAAGGCTCTGATACATGTTCTGTTGCATTCATACAGATTGAAAGCAGACCACAAAAAAAGCGCCCTTTAAGGGTAGTAGATGACTCCAACAAAGGAAGTGCCAAGTGAGTCTTAAATCTGTTTATTGCGCTAAGAACCATGGAATAGTAACTGAAACCATGTCGGCTTTGTTTCATTTGTCTTTTCTGCTCTGGATATCTTTGATTTGTAATCCCTGGTTCCCATTACCATTATTTGTTGCCACTATTCAGTTAATTTTTTTTAGAAATATAAGCTTGAACTCCCCGTGTATGAGTTTCGCAAAGTACAGCTAACCCCACATCCAAATAAAGGAGGGTTTCAGTGGGTTAAAAGACAATGTAAAATTTGATGTATTGAGTTTGATGGTGTCATTCTTGAATTCAATATTGTTTGTGAATCCTTTAGATGTTGAATTCGTGAATAGAGTGGAATGACTATATTGGGTTCATCACCGACTCCTACTAGTTTGGAATTGATCATAGTTGATTGATTGATGTAATAGTTCTTCAAAATTCAAAGTTGACTTTATGCCCACAACTTAGCTAATTTCTTCTTAAAGAAAAAAGAGATTTCGTAAAAATCATCTTTTTGGGTGTGTTTGGTAGGGAGGACAGCATTTTACAGAAAATGTTATCTAATTTACCCGTGTTAGGTTGGTCATAATGTTCTGAAAAATATCTTTTTAGGAAAATGACTTTCTTGGTGGGAGTAGGGAAAACAAGTTCCATAAGCGGCAATGCACGCTCATTATCTCCGCCACACTCCTAACACCCCAACCACTCACCCTCCAACCCACCATTGTCCCCACACCCATCCCATAGTATTTTCCTAGATTATGTTTTAAATGTTTTTAGAAGAATTTTTTTTGCTTACTTACCAAACAACAAAAATAAGTAGTTTAAGAAAACATTTTCTAGGAAAACACTTCCCGTCTTAACATTTTCCTTTGTTTCATTTGCAATTGTGAGAAAAAATAAAAAATTATTGTAAGGTGTATTTAACTAGTTCCCTCCCTCCCTACAATATATTTGTTATTATGACCTTGCCCCACTCCATGACCCACACTACTTCAAGGTTGTGGTTACTGAAGCATGTAGATAAAGCAACATAATTTGGAGGAAAGATGGATCTTCAAATTAGTGAATTTAGTCCTTTCGTCTGGTATAGGTATGATATGCTACTATAGAGGTCCTTGATAGCATAGTGTACTTCTAATTTTCTGTTGTCTAACTTGTTAAAGTTATATGTATCTATAATATATGGCTTTATAAATTGTTCAAGTGCCCAAGGCTTAGCCAAAAAAGAAGAAAAAAATAGTTCAAGTGCCTTGAAAACAAAGGGTATCTATCGCACAAGTCATTGAGATGGCTGTGTTTGTTTATCCTTTTCACTTTGCTGGGGAAGAGAAGAGTGGAATTGGAAGTTTTGAATTTGTGTTCATCCTTGTTTAATAGAAGAAGCAAAAGAATTAGAGTGGATAACTGCACCCATTAATGTGACCATATTTAGTTACTCACCACTTCCTTTTCAAACTATATATTTATTTCACAATACAACCTTCTCTTTATTATAAAATCTTCTTCTTTCCCACTTTTCCAAACCATAGATGTTGTTTAGTCATAGCAAGATTGAAAAACATCCAGTAGCTCCAGTCCCTTAATTTTTCTGGCTGAAGAAACAAGTGCAAGATGATCCTTTATGTTTACACACCGGCACATGTTGCCTCTTCTCATGGCTAGGGTATATTTGAGGTTGGCCTACTTGTGTTTCTGTGGAACTTAAGAAAGTGATTAAATTTTGATGGCAGGTACTTTGACTACCTCTTTTACATTGACTTTGAAGCAT</genome_strand>
        <mrna_strand>CCGGTTAGTTGCTTATCAG............................................................................................................................................GGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAG.........................................................................................GCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATCGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGTGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAG............................................................................................................................................................................................................................GCACTTGAACAATGCAACATTATGTTAAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAG................................................................ATAATCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAGAATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCCAGATAATATTACCAGATTTCTGATACTAGCAAGGGAGCCCATAATTTCGGGAACTGATAGGCCATACAAG.........................................................................ACTAGCATTGTCTTCACTTTGGAAGAAGGACCTGGAGTTCTATTCAAGGCCTTAGCAGTTTTTGCTCTGAGAGAAATCAACTTAACAAAG...............................................................................ATTGAAAGCCGACCACAAAAAAAGCGCCCTTTAAGGGTAATAGATGACTCCAACAAAGGAAGTGCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTGACTACCTCTTTTACATTGACTTTGAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202441" ref_strand="+" ref_description="SGN-E202441 [cLEC-6-O19]">
      <seq>gaggcagctgcacttaaagcatacccgaaatgtgaaactgtcccatgtgatcagtttgaggctgcatttaaggcagttgaattatggttagtagacaaagctgtactcccgattgaaaattcagttgctgggagcatccatcgtaactacgatctactccttcggcataggctgcatattgtgggagaagttcagttgcttgttaaccactgccttctgggcttgccaggaatcaggaaagaggaattaaagcgcgtcgtgagccaccctcaggcacttgaacaatgcaacattatgttgaatgagttaggcgttgcaaggctcagtagtgatgatacttccagtgctgcacagatagtcgcatctgaagggaagagagatactggagcagttgcaagtgctcgagctgcagagatttatgggctcagcattcttgctgaaagaattcaggatgatccagataatatcaccagatttctgatactagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="66923" stop="70356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67223" g_stop="67294" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67295" i_stop="67383" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67384" g_stop="67584" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="273" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67585" i_stop="67804" i_length="220">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67805" g_stop="67885" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="354" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67886" i_stop="67949" i_length="64">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67950" g_stop="68045" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="450" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68046" i_stop="70016" i_length="1971">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70017" g_stop="70056" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="490" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E202441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67223" e_stop="67294"/>
          <exon e_start="67384" e_stop="67584"/>
          <exon e_start="67805" e_stop="67885"/>
          <exon e_start="67950" e_stop="68045"/>
          <exon e_start="70017" e_stop="70056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAGGTATTTTTTTTGTAAAACCAAAGTGATTTTGTTCCTGAAGATATTTTGCATCTTTTCACACCTTTATAGTATTAGTTCTCATTTCTCAGGCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAGGTTATCGTTTCATTTCATTATTCAGAAGAATCTGATGTTTCTCCTTGTTAAACTAAAAAGATGTAGAAATTATTGGATTAGCTTTTGGGTTGAGTTAGACACGAGCTCCTTTTTGATAAATTAAAATAGAAACAGTTACTTCCTTTAGTTTTGCACATAGAATTTATATTGCTTCCATTTCTACTTGGTAAATACTAATACAACCATAACTTGCTTTCAGGCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAGGTATTCCATTAAATTTTCTCATCCTCGGCGGGTTTTATTTCCACATTATTTGACACCTCAACAGATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAGAATTCAGGTTAGGATTTTGCATTTCTAAGGTTCTCCCTTTTGTATTTACTCGATGTAACATTGCATCTTTTGAAATTGCACTTGACTGTCTTTTTAATAATTTATTTCTTGAGCCATGTCACCAACGTTGTGGGCACTCATGACTTGAGAGTATGGATATCCAGTGCGCTTACACGTTCATAAAATAACAGCATTTTCATAGTTTGCATATCGACCAATAACTTTCTAGAAGATCATCGCTTATCTTTGATATGGAAACCTATGATGGTTTCTGGTCTTTTCGTTTTTCCTCGCTGTAGTTTAATCCTATGTAAGAACTGTTACAAAATGTGATACGTAGTTTCCAGAAGGTATAGTTTGCTGACTTTGCTCACTCCTTGTCTCTATCTTCACATGGAACCATAAGCAATTTCAAGATTAAGAGCTAGCAACATGGATGGATGGATTTTTTTTATTCTTTATTCTTAATTTATGGATGGGATAGAATGATAAAAAATCAGATCATGAATAGTTATTGATTTAATCTTTGGCTTATAAAGAAACATTATACATTGTACTGCTCATTCAGACTGTAATGAGCAGCAAATACATTTCCTTTAAGGAACTTGCATGGTGTCAAAATTAGGATGTTTTCATTTTGATAAACCTAGGAAAATAAAGAATGATTTTTCAGAAGCAACTTCAACTGTGAACCAGTCTGCTAAAATATTTTATACCTGTTCGTAAGTGTTTGGGCTCAAATCCACCCATGCATGCTTCGCCTAGCTGGTTGTGAACCAGAGAAATTAGGAGTATGGTAGATCAATGGCCAGTGAAAAAATAGTTAAACCACGAAGATGGTGATTGGGGTTTGGCAAGGTTATTCCAGGATCACCAATATCTTCCTTGTCATAAACACAGCACCAATATAGGTAGTTTGGTTGCAGATAATAATGGTTCTAAGTTTTGAGTTCAAAATCATAGCTGTATTTGAAACTTTTGAGCGTCATTTTTTGCTGTGTTCTGCTGCAGGAGATTAGGGGAATATGGTACTCTTATTTCTACATGATTTTCTCCTTCCACTACTGAGTTTTTCTCTTCCTCTAATCTGCTTTGGATACTTTGAATGGAATTATGTGGATTTCAGAATATGAAGAAGAAGCCTTGGTTTGTGCAGTTACAAGATAACAATTAAAATTTGTCTGGATGGGCCAGTGTTGACAAAATAGAAAAGAACTTAAAAAAAGATGAAAGGTCTGCTGGAGCTTTAAATGCAAATAAAGCGTGAACATCAATAAAATAACCGCCAAGGGAGAAAAAAAAATATAACTGTTTAGTTTAAGGCTAAGACGACACTGAAGCACTCATTAAGCAAGATGGAAGTGCTCAACACGTTTTGAGCCTCGCTTTAGGGCTTAAGCACGTCTTTGACAATAATGGGATGGGCTAATAGAAGTTTTAGCATGATGCGTCTTTGTGTTTATTATTACGACTGCCTTATAAATCTAAGTCGGATCCTCCAAAAATGCCACTGCACACGTGTCGAATTGTAAACCTTATCCCCATCAATGAAGTTGAATAGTAACTAGTAAACTTTGAATATTTAACTAATTAAACGTAAAAGGTCGTCATAATTACACAATAATCAATAGCCATTTAACTTAATTAAATAGAAATCGAGTCAAATTATATTGTTGACCAAAACTATTACAATAATTCTGTCAAGTCCTAAAATTTATGTGATGACGAATCTGGCCTCTAGATCTACACTTGTATTGGCACCGAACATCATAGTTTATTAAGGCAGTCTGAGAATTAGTTCTCAACCATAGAAGATATTTATAAGTCTTTTCTCTGCTTTTGCGTCTTTATCAACTTGGTTCTGCTCTTGACCAAGCTGGTGCAGCTAAAAACTGCAAAGCTATTAGCCAAATATATTTGCTATAATCTGCTGTGAAACTTCAGTAATGTGATTTTTAATTGCATGACCAATAACCAGGATGATCCAGATAATATCACCAGATTTCTGATACTAGCGA</genome_strand>
        <mrna_strand>GAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAG.........................................................................................GCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAG............................................................................................................................................................................................................................GCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAG................................................................ATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAGAATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCCAGATAATATCACCAGATTTCTGATACTAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393491" ref_strand="+" ref_description="SGN-E393491 [TUS-38-M4](-)">
      <seq>gccatataagattagcattgttttcactttggaagaaggacctggagttttattcaaggccttagcagtttttgttttgagggagatcaatttaacaaagattgaaagcagaccacaaaaaaagcgccctttaagggtagtagatgactccaacaaaggaagtgccaagtactttgactaccttttttacattgactttgaagcatcgatggcagaccctcgtgctcaatatgcttttgagcattttcaggaatttgcaagattcattcgagtttttgggtgctatcccatggacaaaaatttatgattgcttatttttcagaagtatattataggagattcaacttgtagaggagttgttcaacttaaattgttgtatgtgtattatttgctgggaacttccagtccagtaggccattgttgtgcctgccctgtgctttcatattctttccatttgcattttagaaaatttgttggttcagtttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="69863" stop="73241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70085" g_stop="70094" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="70167" i_length="73">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70168" g_stop="70257" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="100" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70258" i_stop="70336" i_length="79">
            <donor d_prob="0.838" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70337" g_stop="70404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="168" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70405" i_stop="72128" i_length="1724">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72129" g_stop="72210" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="250" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72211" i_stop="72703" i_length="493">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72704" g_stop="72939" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="486" r_length="236" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="508"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E393491" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70085" e_stop="70094"/>
          <exon e_start="70168" e_stop="70257"/>
          <exon e_start="70337" e_stop="70404"/>
          <exon e_start="72129" e_stop="72210"/>
          <exon e_start="72704" e_stop="72939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATATAAGGTAATATCATATTCTTCTTCATTGAACTTATTTTGTTCATACAAAGAATTGATGTTCCCTTTTCATTTTCTAGACTAGCATTGTCTTCACTTTGGAAGAAGGACCTGGAGTTCTATTCAAGGCCTTAGCAGTTTTTGCTCTGAGAGAGATCAATTTAACAAAGGTATTTCTGTTGGAAAAGCTTTTGTAGTTCCCTTCTCTAGTTAAAAGGCTCTGATACATGTTCTGTTGCATTCATACAGATTGAAAGCAGACCACAAAAAAAGCGCCCTTTAAGGGTAGTAGATGACTCCAACAAAGGAAGTGCCAAGTGAGTCTTAAATCTGTTTATTGCGCTAAGAACCATGGAATAGTAACTGAAACCATGTCGGCTTTGTTTCATTTGTCTTTTCTGCTCTGGATATCTTTGATTTGTAATCCCTGGTTCCCATTACCATTATTTGTTGCCACTATTCAGTTAATTTTTTTTAGAAATATAAGCTTGAACTCCCCGTGTATGAGTTTCGCAAAGTACAGCTAACCCCACATCCAAATAAAGGAGGGTTTCAGTGGGTTAAAAGACAATGTAAAATTTGATGTATTGAGTTTGATGGTGTCATTCTTGAATTCAATATTGTTTGTGAATCCTTTAGATGTTGAATTCGTGAATAGAGTGGAATGACTATATTGGGTTCATCACCGACTCCTACTAGTTTGGAATTGATCATAGTTGATTGATTGATGTAATAGTTCTTCAAAATTCAAAGTTGACTTTATGCCCACAACTTAGCTAATTTCTTCTTAAAGAAAAAAGAGATTTCGTAAAAATCATCTTTTTGGGTGTGTTTGGTAGGGAGGACAGCATTTTACAGAAAATGTTATCTAATTTACCCGTGTTAGGTTGGTCATAATGTTCTGAAAAATATCTTTTTAGGAAAATGACTTTCTTGGTGGGAGTAGGGAAAACAAGTTCCATAAGCGGCAATGCACGCTCATTATCTCCGCCACACTCCTAACACCCCAACCACTCACCCTCCAACCCACCATTGTCCCCACACCCATCCCATAGTATTTTCCTAGATTATGTTTTAAATGTTTTTAGAAGAATTTTTTTTGCTTACTTACCAAACAACAAAAATAAGTAGTTTAAGAAAACATTTTCTAGGAAAACACTTCCCGTCTTAACATTTTCCTTTGTTTCATTTGCAATTGTGAGAAAAAATAAAAAATTATTGTAAGGTGTATTTAACTAGTTCCCTCCCTCCCTACAATATATTTGTTATTATGACCTTGCCCCACTCCATGACCCACACTACTTCAAGGTTGTGGTTACTGAAGCATGTAGATAAAGCAACATAATTTGGAGGAAAGATGGATCTTCAAATTAGTGAATTTAGTCCTTTCGTCTGGTATAGGTATGATATGCTACTATAGAGGTCCTTGATAGCATAGTGTACTTCTAATTTTCTGTTGTCTAACTTGTTAAAGTTATATGTATCTATAATATATGGCTTTATAAATTGTTCAAGTGCCCAAGGCTTAGCCAAAAAAGAAGAAAAAAATAGTTCAAGTGCCTTGAAAACAAAGGGTATCTATCGCACAAGTCATTGAGATGGCTGTGTTTGTTTATCCTTTTCACTTTGCTGGGGAAGAGAAGAGTGGAATTGGAAGTTTTGAATTTGTGTTCATCCTTGTTTAATAGAAGAAGCAAAAGAATTAGAGTGGATAACTGCACCCATTAATGTGACCATATTTAGTTACTCACCACTTCCTTTTCAAACTATATATTTATTTCACAATACAACCTTCTCTTTATTATAAAATCTTCTTCTTTCCCACTTTTCCAAACCATAGATGTTGTTTAGTCATAGCAAGATTGAAAAACATCCAGTAGCTCCAGTCCCTTAATTTTTCTGGCTGAAGAAACAAGTGCAAGATGATCCTTTATGTTTACACACCGGCACATGTTGCCTCTTCTCATGGCTAGGGTATATTTGAGGTTGGCCTACTTGTGTTTCTGTGGAACTTAAGAAAGTGATTAAATTTTGATGGCAGGTACTTTGACTACCTCTTTTACATTGACTTTGAAGCATCGATGGCAGACCCTCGTGCTCAATATGCTCTTGAGCATCTTCAGGTTAGTACAACAATCTCTAATATGACCCCTCAGCCAGAAAACAAGTTGCTAAGGTAGCTCTATTACCATTTACATGTGTTGTCTTGTTGCTATCTTGTGCCACCTGTTCGTCACTTGATCTTCCAAATGCATTTACTATTTATTAATATCAACATCAGTTGTTGCCTTCTTGCCTTTCTTGTTTTTAGAGTTCTTGGCAACAGAATTGATATCAACATCATGTGCTATTTCTTTGGTTGCTCATTCTATTCCTTTTTGTGCAATAGAAACCTGTTGGTATGTGTATAATAGACACACACACTCACACATATTTCCAAATGTGGACAGTGCAGATTCCTATATCCGACCCCAACTTGGTTTGGGAATGAGGCATAATGCTGTTGGCTTTCCTCCTATTTGATATCCTCTCTTTGCAGCTTGTATATTATGGTCTGCCATGCTGGCAGAATTTGAAGACCACGTCTCTAAATCTCCTAATGTTTCTTCAATGCAGGAATTTGCAAGATTCATTCGAGTTCTTGGCTGCTATCCCATGGACAAAAATCTATGATTGCTTATCTTTCAGAAGTATATTATAGGAGATTCAACTTGTAGAGGAGTTGTTCAACTTAAATTGTTGTATGTGTATTATCTGCTGGGAACTTCCAGTCCAGTAGGCCATTGTTGTGCCTGCCCTGTGCTCTCATATTCTTTCCATCTGCATTTTAGAAAATTTGTTGGTTCAGTTTA</genome_strand>
        <mrna_strand>GCCATATAAG.........................................................................ATTAGCATTGTTTTCACTTTGGAAGAAGGACCTGGAGTTTTATTCAAGGCCTTAGCAGTTTTTGTTTTGAGGGAGATCAATTTAACAAAG...............................................................................ATTGAAAGCAGACCACAAAAAAAGCGCCCTTTAAGGGTAGTAGATGACTCCAACAAAGGAAGTGCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTGACTACCTTTTTTACATTGACTTTGAAGCATCGATGGCAGACCCTCGTGCTCAATATGCTTTTGAGCATTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGCAAGATTCATTCGAGTTTTTGGGTGCTATCCCATGGACAAAAATTTATGATTGCTTATTTTTCAGAAGTATATTATAGGAGATTCAACTTGTAGAGGAGTTGTTCAACTTAAATTGTTGTATGTGTATTATTTGCTGGGAACTTCCAGTCCAGTAGGCCATTGTTGTGCCTGCCCTGTGCTTTCATATTCTTTCCATTTGCATTTTAGAAAATTTGTTGGTTCAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577614" ref_strand="-" ref_description="SGN-E577614 [LE15AG05]">
      <seq>accactttggcaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtttgtgtatgtatgaaattatccaatcagcaagtgcagacatcaaatctttcattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="76792" stop="73807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76492" g_stop="76429" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="112" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="220" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="373" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74427" g_stop="74103" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="698" r_length="325" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E577614" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577614" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76492" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCATTCATCAT</genome_strand>
        <mrna_strand>ACCACTTTGGCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226928" ref_strand="+" ref_description="SGN-E226928 [cLEL-26-L4](-)">
      <seq>gcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtttgtgtatgtatgaaattatccaatcagcaagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="74986" stop="73818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74686" g_stop="74537" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74427" g_stop="74111" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="467" r_length="317" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E226928" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74686" e_stop="74537"/>
          <exon e_start="74427" e_stop="74111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCA</genome_strand>
        <mrna_strand>GCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352471" ref_strand="+" ref_description="SGN-E352471 [cTOS-9-G23]">
      <seq>agacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtttgtgtatgtatgaaattatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="75426" stop="73832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75126" g_stop="75056" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="224" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74427" g_stop="74131" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="521" r_length="297" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E352471" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75126" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAG</genome_strand>
        <mrna_strand>AGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350491" ref_strand="+" ref_description="SGN-E350491 [cTOS-5-G21]">
      <seq>aaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtttgtgtatgtatgaaattatccaatcagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="75599" stop="73832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75299" g_stop="75276" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="132" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="285" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74427" g_stop="74132" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="581" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E350491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75299" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAA</genome_strand>
        <mrna_strand>AAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226575" ref_strand="+" ref_description="SGN-E226575 [cLEL-26-L4](-)">
      <seq>gcaataggcactgataatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtttgtgtatgtatgaaattatccaatcagcaaatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="74986" stop="73818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74686" g_stop="74537" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74427" g_stop="74132" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="446" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E226575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74686" e_stop="74537"/>
          <exon e_start="74427" e_stop="74132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAA</genome_strand>
        <mrna_strand>GCAATAGGCACTGATAATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218233" ref_strand="+" ref_description="SGN-E218233 [cLEL-23-L9](-)">
      <seq>tggttgacaataaggattttctgacggagccagaatcgtccgagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtgccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatgtgacatctctaacttgctgagtatgtcgtgctggttcctattcaccttttgaggttgtgtatgtatgaaattatccgatcagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="74723" stop="73832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74423" g_stop="74132" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="307"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E218233" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74423" e_stop="74132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAA</genome_strand>
        <mrna_strand>TGGTTGACAATAAGGATTTTCTGACGGAGCCAGAATCGTCCGAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTGCCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATGTGACATCTCTAACTTGCTGAGTATGTCGTGCTGGTTCCTATTCACCTTTTGAGGTTGTGTATGTATGAAATTATCCGATCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217877" ref_strand="+" ref_description="SGN-E217877 [cLEL-23-L9](-)">
      <seq>cttgttcgtatttcactagatttcaataaataatctcctgtggtgtttatcttcacatgctggctaatgcatatgtgtctagtgccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcgtgctggttcctattcaccttttgaggttgtgtatgtattaaattatccgatcaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="74661" stop="73832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74361" g_stop="74132" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="231" polyA_stop="245"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E217877" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74361" e_stop="74132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAA</genome_strand>
        <mrna_strand>CTTGTTCGTATTTCACTAGATTTCAATAAATAATCTCCTGTGGTGTTTATCTTCACATGCTGGCTAATGCATATGTGTCTAGTGCCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCGTGCTGGTTCCTATTCACCTTTTGAGGTTGTGTATGTATTAAATTATCCGATCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352727" ref_strand="+" ref_description="SGN-E352727 [cTOS-11-N13]">
      <seq>tcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtggtacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctatttcacttttgagtttgtgtatgtatgaaattatccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="76882" stop="73839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76582" g_stop="76429" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="202" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="310" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="463" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74427" g_stop="74134" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="757" r_length="294" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E352727" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76582" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGC</genome_strand>
        <mrna_strand>TCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGGTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTTCACTTTTGAGTTTGTGTATGTATGAAATTATCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711691" ref_strand="+" ref_description="SGN-E711691 [FB02CG11]">
      <seq>cgcttaagagtctcactttgtggttgagttgacatataattacggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtggtacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtttgtgaatgtatgaaattatccaaaaaaaaaaaaaaaaaaaaaaaacctggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="78875" stop="73832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78575" g_stop="78538" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="103" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="316" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="364" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="472" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="625" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74427" g_stop="74140" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="913" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="914" polyA_stop="937"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E711691" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78575" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCA</genome_strand>
        <mrna_strand>CGCTTAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGGTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGAATGTATGAAATTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229118" ref_strand="+" ref_description="SGN-E229118 [cLEL-29-B5](-)">
      <seq>aatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtaagtgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="74944" stop="73856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74644" g_stop="74537" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74427" g_stop="74157" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="379" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="396"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E229118" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74644" e_stop="74537"/>
          <exon e_start="74427" e_stop="74157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGT</genome_strand>
        <mrna_strand>AATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTAAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228638" ref_strand="+" ref_description="SGN-E228638 [cLEL-29-B5](-)">
      <seq>aggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtttgtgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="74952" stop="73856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74652" g_stop="74537" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74427" g_stop="74159" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="385" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="404"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E228638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74652" e_stop="74537"/>
          <exon e_start="74427" e_stop="74159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGT</genome_strand>
        <mrna_strand>AGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335769" ref_strand="+" ref_description="SGN-E335769 [cTOE-19-G19]">
      <seq>taacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="74871" stop="73861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74571" g_stop="74537" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74427" g_stop="74161" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="302" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E335769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74571" e_stop="74537"/>
          <exon e_start="74427" e_stop="74161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTT</genome_strand>
        <mrna_strand>TAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326294" ref_strand="-" ref_description="SGN-E326294 [cTOC-14-C4]">
      <seq>cagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaaaaaaaaaaaaaaaaaaactcgaactagttctctctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="75465" stop="73873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75286" g_stop="75276" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="119" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="272" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74427" g_stop="74173" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="527" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="546"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E326294" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326294" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75286" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCA</genome_strand>
        <mrna_strand>CAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556347" ref_strand="+" ref_description="SGN-E556347 [cTSD-3-D14]">
      <seq>gtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcnnaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="76804" stop="73874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76504" g_stop="76429" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="124" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="232" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="385" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74427" g_stop="74174" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="639" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="697"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E556347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76504" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTC</genome_strand>
        <mrna_strand>GTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732885" ref_strand="+" ref_description="SGN-E732885 [LB03BF05]">
      <seq>accggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="77053" stop="73875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76753" g_stop="76718" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="249" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="297" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="405" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="558" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74427" g_stop="74175" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="811" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E732885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76753" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATT</genome_strand>
        <mrna_strand>ACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695084" ref_strand="+" ref_description="SGN-E695084 [LH_Ea05J18](-)">
      <seq>taattatggagttgataagtatgacattggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgctatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagcccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatccacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgctgaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggactcaacaccaagataacttcatttctggatccggatggctggaaaacagtgctggttgccaataaggattttttgaaggagctagaattgtccaagtaactggtcaagaagatgcttgttcgtattttactagatatcaataaataatctgctgtggtgtttatcttcacatgcatactaatgcatatgtgtttagtcccgtaatcaactactcctttaagcacttttccagacattttcgtgtgttacaatgtgaatttgacatctctaaaagggtgagtatgtcttgctggttcctataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="77082" stop="73876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="67" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="280" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="328" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="436" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="589" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74427" g_stop="74178" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="839" r_length="250" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="840" polyA_stop="861"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E695084" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCT</genome_strand>
        <mrna_strand>ATTATGGAGTTGATAAGTATGACATTGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCTATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGCCCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATCCACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCTGAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTCAACACCAAGATAACTTCATTTCTGGATCCGGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGCCAATAAGGATTTTTTGAAGGAGCTAGAATTGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTTACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCATACTAATGCATATGTGTTTAGTCCCGTAATCAACTACTCCTTTAAGCACTTTTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAAAAGGGTGAGTATGTCTTGCTGGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376814" ref_strand="-" ref_description="SGN-E376814 [TUS-19-H1]">
      <seq>ccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattaaaaaaaaaaaaaaaaaaaacagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="76791" stop="73873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76491" g_stop="76429" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="111" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="219" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="372" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74427" g_stop="74178" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="622" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="647"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E376814" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76491" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCT</genome_strand>
        <mrna_strand>CCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351250" ref_strand="+" ref_description="SGN-E351250 [cTOS-6-F5]">
      <seq>tcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtggtacaatgtgaatttgacatctctaacttgctgagtatgtcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="76882" stop="73884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76582" g_stop="76429" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="202" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="310" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="463" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74427" g_stop="74184" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="707" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E351250" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76582" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTG</genome_strand>
        <mrna_strand>TCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGGTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353234" ref_strand="+" ref_description="SGN-E353234 [cTOS-14-P11]">
      <seq>tcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctcagacattttcgtgtgttacatgtgaattgacatctctaacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="76882" stop="73898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76582" g_stop="76429" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="202" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="310" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="463" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74427" g_stop="74198" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="690" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E353234" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76582" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTG</genome_strand>
        <mrna_strand>TCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCT-CAGACATTTTCGTGTGTTAC-ATGTGAA-TTGACATCTCTAACTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352902" ref_strand="+" ref_description="SGN-E352902 [cTOS-11-N9]">
      <seq>tcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacnataaggatttttctgaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataataatctgctgtggtggttatcttcacatgcagactaatgcatatgtgtctagtaccgtaaatcactactcctttagcacttctcagacattttcgtgtgggtacatgtgaatttgacatctctaacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="76882" stop="73899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76582" g_stop="76429" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="202" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="310" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="463" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74427" g_stop="74199" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="689" r_length="226" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E352902" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76582" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGA-TTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCT</genome_strand>
        <mrna_strand>TCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACNATAAGGATTTTTCTG-AGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAAT-AATAATCTGCTGTGGTGGTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAAATCACTACTCCTTT-AGCACTTCT-CAGACATTTTCGTGTGGGTACATGTGAATTTGACATCTCTAACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713076" ref_strand="+" ref_description="SGN-E713076 [FB06CF06]">
      <seq>gaggtgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="75455" stop="73905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75159" g_stop="75056" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="257" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74427" g_stop="74205" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="480" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="498"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E713076" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75159" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAA</genome_strand>
        <mrna_strand>GAGGTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711820" ref_strand="+" ref_description="SGN-E711820 [FB03AD01]">
      <seq>cgttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcaaactaatgcatatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="78882" stop="73984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78583" g_stop="78538" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="111" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="324" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="372" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="480" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="633" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74427" g_stop="74284" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="777" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E711820" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78583" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGT</genome_strand>
        <mrna_strand>CGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAAACTAATGCATATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376813" ref_strand="-" ref_description="SGN-E376813 [TUS-19-H1](-)">
      <seq>atataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="77087" stop="73985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="70" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="283" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="331" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="439" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="592" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74427" g_stop="74285" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="735" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E376813" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376813" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTG</genome_strand>
        <mrna_strand>ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261235" ref_strand="+" ref_description="SGN-E261235 [cLEG-65-J24]">
      <seq>gacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="77062" stop="74035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76762" g_stop="76718" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="258" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="306" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="414" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="567" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74427" g_stop="74335" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="660" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E261235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76762" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAAT</genome_strand>
        <mrna_strand>GACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322149" ref_strand="+" ref_description="SGN-E322149 [cTOB-24-E8]">
      <seq>ataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="77070" stop="74074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76770" g_stop="76718" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="266" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="314" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="422" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="575" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74427" g_stop="74374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="629" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E322149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76770" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTG</genome_strand>
        <mrna_strand>ATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291974" ref_strand="+" ref_description="SGN-E291974 [cLET-7-K24]">
      <seq>agtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatgcatagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcggaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaagagctagaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="77067" stop="74086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76767" g_stop="76718" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="263" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="311" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="419" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="572" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74427" g_stop="74386" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="614" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E291974" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76767" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCG</genome_strand>
        <mrna_strand>AGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATGCATAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGGAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAAGAGCTAGAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691244" ref_strand="+" ref_description="SGN-E691244 [LH_Ea05J18]">
      <seq>cgttcactctctctcaatctgtagaacatggcggaagcaagcgctccagcagtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttcaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacattggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgctatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgctgaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggactncacaccaagataacttcatttctggatccggatggctgggaaacagtgctggttgacaataaggattttctgaaggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79416" stop="74093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79119" g_stop="79099" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="146" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="271" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="336" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="549" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="597" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="705" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="858" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74393" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="893" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E691244" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79119" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCT</genome_strand>
        <mrna_strand>CGTTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGCGCTCCAGCAGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTCAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATTGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCTATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCTGAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTNCACACCAAGATAACTTCATTTCTGGATCCGGATGGCTGGGAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730320" ref_strand="+" ref_description="SGN-E730320 [LA23DB01]">
      <seq>tcttacaagtctcnntctgtagaanatggnggaagcaagtgcaccttctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagggatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacnataaggattttctgaaggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79168" stop="74093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79118" g_stop="79099" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.650"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="144" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="269" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="334" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="547" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="595" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="703" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="856" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74393" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="891" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E730320" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79118" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCT</genome_strand>
        <mrna_strand>TCTTAC-AAGTCTCNNTCTG...........................................................................................................................................................................................................................................TAGAANATGGNGGAAGCAAGTGCACCTTCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGGGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACNATAAGGATTTTCTGAAGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701131" ref_strand="+" ref_description="SGN-E701131 [FA15AE01]">
      <seq>gactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaccaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgaacataaggattttctgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79424" stop="74097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79124" g_stop="79099" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="148" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="273" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="338" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="551" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="599" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="707" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="860" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74397" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="891" r_length="31" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E701131" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79124" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGG</genome_strand>
        <mrna_strand>GACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTACCACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGAACATAAGGATTTTCTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702424" ref_strand="+" ref_description="SGN-E702424 [FA18CG03]">
      <seq>tctctatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcatagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgnacataaggattttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79174" stop="74098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79108" g_stop="79099" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="135" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="260" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="325" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="538" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="585" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="693" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="846" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74398" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="876" r_length="30" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E702424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79108" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAG</genome_strand>
        <mrna_strand>TCTCTATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCAT-AG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGNACATAAGGATTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702390" ref_strand="+" ref_description="SGN-E702390 [FA18CD03]">
      <seq>tctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcatagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79168" stop="74100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79108" g_stop="79099" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="135" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="260" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="325" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="538" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="585" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="693" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="846" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74400" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="874" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E702390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79108" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGA</genome_strand>
        <mrna_strand>TCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCAT-AG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700883" ref_strand="+" ref_description="SGN-E700883 [FA14BG03]">
      <seq>ccccttttacacagaatgttttgggatgaaattgttgaggcagagacatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="78961" stop="74100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78741" g_stop="78739" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="0.333"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="128" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="193" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="406" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="454" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="562" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="715" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74427" g_stop="74400" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="743" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E700883" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78741" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGA</genome_strand>
        <mrna_strand>CCC............................................................................CTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGACATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729483" ref_strand="+" ref_description="SGN-E729483 [LA21AH01]">
      <seq>ctttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctgggaaacagtgctgggttgacataaggattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79433" stop="74235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79133" g_stop="79099" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="160" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="285" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="350" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="563" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="611" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="719" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="872" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74403" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="897" r_length="25" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E729483" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79133" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCT-GGTTGACAATAAGGATTTTC</genome_strand>
        <mrna_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGGAAACA.............................................................................................................GTGCTGGGTTGAC-ATAAGGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710687" ref_strand="+" ref_description="SGN-E710687 [FA56BA01]">
      <seq>cgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacacccagataacttcatttctggatccagatggctggaaaacagtgctggttgacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79161" stop="74235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78862" g_stop="78739" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="249" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="314" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="527" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="575" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="683" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="836" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74427" g_stop="74412" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="852" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E710687" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78862" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATA</genome_strand>
        <mrna_strand>CGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCCAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707762" ref_strand="+" ref_description="SGN-E707762 [FA33DF06]">
      <seq>cactttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79435" stop="74235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79135" g_stop="79099" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="162" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="287" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="352" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="565" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="613" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="721" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="874" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74419" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="883" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E707762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79135" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTT</genome_strand>
        <mrna_strand>CACTTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701414" ref_strand="+" ref_description="SGN-E701414 [FA15DF04]">
      <seq>ctctttcacgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttnacaccaagataacttcatttctggatccagatggctggaaaacagtgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79433" stop="74235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79133" g_stop="79099" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="157" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="282" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="347" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="560" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="608" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="716" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="869" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74420" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="877" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E701414" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79133" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGT</genome_strand>
        <mrna_strand>CTCTTTCACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTNACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335035" ref_strand="+" ref_description="SGN-E335035 [cTOE-9-I2]">
      <seq>ctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79075" stop="74245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78775" g_stop="78739" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="162" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="227" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="440" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="488" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="596" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74689" g_stop="74545" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="741" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E335035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78775" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCT</genome_strand>
        <mrna_strand>CTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700200" ref_strand="+" ref_description="SGN-E700200 [FA12BG06]">
      <seq>agcaattgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagatacctttatttctggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79149" stop="74253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78849" g_stop="78739" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="236" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="301" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="514" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="562" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="670" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74689" g_stop="74553" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="807" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E700200" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78849" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCC</genome_strand>
        <mrna_strand>AGCAATTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATACCTTTATTTCTGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700806" ref_strand="+" ref_description="SGN-E700806 [FA14AH06]">
      <seq>cactttaccacgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaagttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79435" stop="74255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79135" g_stop="79099" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="159" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="284" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="349" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="562" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="610" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="718" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74555" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="853" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E700806" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79135" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGAT</genome_strand>
        <mrna_strand>CACTTTACCACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAAGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323490" ref_strand="+" ref_description="SGN-E323490 [cTOC-7-M5]">
      <seq>tgctattgccacaccagatgtttacaaactggttgaggagatataggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="77036" stop="74256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76736" g_stop="76718" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="232" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="280" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="388" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74689" g_stop="74556" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="522" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E323490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76736" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGA</genome_strand>
        <mrna_strand>TGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATATAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708185" ref_strand="+" ref_description="SGN-E708185 [FA35AC11]">
      <seq>cccattatagatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79428" stop="74262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79129" g_stop="79099" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="156" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="281" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="346" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="559" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="607" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="715" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74562" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="843" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E708185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79129" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATT</genome_strand>
        <mrna_strand>CCCATTATAGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726825" ref_strand="+" ref_description="SGN-E726825 [LA12DG01]">
      <seq>ctttaccacgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggtttgtcatcttgctatcccagagctcggaggaaagataactagacagccaggatcaattcctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79433" stop="74284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79133" g_stop="79099" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="157" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="282" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="347" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="560" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="608" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="716" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74584" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="822" r_length="106" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E726825" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79133" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGAC</genome_strand>
        <mrna_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTTGTCATCTTGCTATCCCAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729737" ref_strand="+" ref_description="SGN-E729737 [LA21DG07]">
      <seq>ctttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctggagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79433" stop="74309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79133" g_stop="79099" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="160" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="285" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="350" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="563" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="611" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="719" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74609" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="800" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E729737" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79133" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACT</genome_strand>
        <mrna_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGGAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723187" ref_strand="+" ref_description="SGN-E723187 [FC19CG10]">
      <seq>tggcggccaatcggccgaattgacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79426" stop="74321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79124" g_stop="79099" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="50" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="175" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="300" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="365" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="578" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="626" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="734" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74621" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="803" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E723187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79124" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGA</genome_strand>
        <mrna_strand>GACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710551" ref_strand="+" ref_description="SGN-E710551 [FA55DB03]">
      <seq>ctttaccacgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaacgcacatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79433" stop="74325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79133" g_stop="79099" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="157" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="282" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="347" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="560" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="608" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="716" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74625" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="781" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E710551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79133" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCT</genome_strand>
        <mrna_strand>CTTTACCACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAACGCACATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708833" ref_strand="+" ref_description="SGN-E708833 [FA36DF01]">
      <seq>ccatttaaggacgactgatctcactctctctcaatctgaacatcgtggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79435" stop="74333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79136" g_stop="79099" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="160" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="285" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="350" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="563" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="611" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="719" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74633" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="776" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E708833" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79136" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATC</genome_strand>
        <mrna_strand>CCATTTAAGGACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATCGTGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700720" ref_strand="+" ref_description="SGN-E700720 [FA13DH06]">
      <seq>acctctgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggtttgtcatcttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79429" stop="74334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79129" g_stop="79099" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="157" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="282" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="347" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="560" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="608" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="716" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74634" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="772" r_length="56" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E700720" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79129" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAC-GACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTAT</genome_strand>
        <mrna_strand>ACCTCTGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTTGTCATCTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719883" ref_strand="+" ref_description="SGN-E719883 [FC09AF05]">
      <seq>gactctctctcaatcccctcatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79158" stop="74335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79115" g_stop="79099" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="139" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="264" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="329" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="542" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="590" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="698" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74635" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="753" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E719883" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79115" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTA</genome_strand>
        <mrna_strand>GACTCTCTCTCAATCCC..............................................................................................................................................................................................................................................CTCATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711041" ref_strand="+" ref_description="SGN-E711041 [FA57DB01]">
      <seq>cacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagacagccccctccccacccantttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgtaagtggtgaacaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaatacgcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79159" stop="74335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="247" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="312" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="525" r_length="213" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="573" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="681" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74689" g_stop="74635" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="736" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E711041" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTA</genome_strand>
        <mrna_strand>CACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGACAGCCCCCTCCCCACCCANTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGTAAGTGGTGAACAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATACGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264966" ref_strand="+" ref_description="SGN-E264966 [cLEI-10-N9]">
      <seq>tccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="78914" stop="74362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78614" g_stop="78538" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="142" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="355" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="403" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="511" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74689" g_stop="74662" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="539" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E264966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78614" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACA</genome_strand>
        <mrna_strand>TCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317058" ref_strand="+" ref_description="SGN-E317058 [cTOA-27-G18]">
      <seq>tgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaatangcactgatgatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79421" stop="74749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79121" g_stop="79099" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="145" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="270" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="335" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="548" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="596" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="704" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E317058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79121" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG</genome_strand>
        <mrna_strand>TGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347079" ref_strand="+" ref_description="SGN-E347079 [cTOF-25-D22]">
      <seq>tctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaatgcatacgcacagattgcaatangcactgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79168" stop="74749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79112" g_stop="79099" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="139" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="264" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="329" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="542" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="590" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="697" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E347079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79112" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG</genome_strand>
        <mrna_strand>TCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGG-AATGCATACGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255773" ref_strand="+" ref_description="SGN-E255773 [cLEG-36-N2]">
      <seq>gaaattgttgaggcttagagatattccagaggagaagtattcgagtgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="78938" stop="74762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78638" g_stop="78538" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="166" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="379" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="427" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75163" g_stop="75062" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="529" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E255773" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78638" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATAC</genome_strand>
        <mrna_strand>GAAATTGTTGAGGCTTAGAGATATTCCAGAGGAGAAGTATTCGAGTGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347845" ref_strand="+" ref_description="SGN-E347845 [cTOF-26-N20]">
      <seq>actttaccacgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79434" stop="74763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79134" g_stop="79099" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="158" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="283" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="348" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="561" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="609" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75063" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="710" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E347845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79134" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATA</genome_strand>
        <mrna_strand>ACTTTACCACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332353" ref_strand="+" ref_description="SGN-E332353 [cTOD-17-L16]">
      <seq>acgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79426" stop="74763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79126" g_stop="79099" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="150" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="275" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="340" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="553" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="601" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75063" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="702" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E332353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79126" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATA</genome_strand>
        <mrna_strand>ACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340177" ref_strand="+" ref_description="SGN-E340177 [cTOF-2-A20]">
      <seq>tcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79416" stop="74763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79116" g_stop="79099" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="143" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="268" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="333" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="546" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="594" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75063" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="695" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E340177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79116" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATA</genome_strand>
        <mrna_strand>TCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326538" ref_strand="+" ref_description="SGN-E326538 [cTOC-17-O14]">
      <seq>ctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacataccactatggtgtgactgaatacacaaagggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79417" stop="74767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79117" g_stop="79099" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="144" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="269" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="334" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="547" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="595" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75067" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="692" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E326538" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79117" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATG</genome_strand>
        <mrna_strand>CTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACCACTATGGTGTGACTGAATACACAAAGGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342213" ref_strand="+" ref_description="SGN-E342213 [cTOF-10-N6]">
      <seq>tctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79168" stop="74779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79112" g_stop="79099" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="139" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="264" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="329" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="542" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="590" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75079" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="675" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E342213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79112" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACA</genome_strand>
        <mrna_strand>TCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343216" ref_strand="+" ref_description="SGN-E343216 [cTOF-17-H16]">
      <seq>actttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79434" stop="74836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79134" g_stop="79099" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="161" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="286" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="351" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="564" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="612" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75136" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="640" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E343216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79134" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTC</genome_strand>
        <mrna_strand>ACTTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316081" ref_strand="+" ref_description="SGN-E316081 [cTOA-23-F21]">
      <seq>tctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79168" stop="74836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79112" g_stop="79099" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="139" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="264" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="329" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="542" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="590" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75136" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="618" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E316081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79112" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTC</genome_strand>
        <mrna_strand>TCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305386" ref_strand="+" ref_description="SGN-E305386 [cLEX-15-G5]">
      <seq>ttgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="76945" stop="74836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76731" g_stop="76718" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="227" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="275" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75163" g_stop="75136" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="303" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E305386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76731" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTC</genome_strand>
        <mrna_strand>TTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329083" ref_strand="+" ref_description="SGN-E329083 [cTOC-24-L5]">
      <seq>tttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttaaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79432" stop="74837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79132" g_stop="79099" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="159" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="284" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="349" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="562" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="610" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75137" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="637" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E329083" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79132" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCT</genome_strand>
        <mrna_strand>TTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTAAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308007" ref_strand="+" ref_description="SGN-E308007 [cLEY-14-O17]">
      <seq>gatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79420" stop="74837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79120" g_stop="79099" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="144" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="269" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="334" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="547" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="595" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75137" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="622" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E308007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79120" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCT</genome_strand>
        <mrna_strand>GATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272766" ref_strand="+" ref_description="SGN-E272766 [cLEM-21-B2]">
      <seq>tgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgggggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79161" stop="74837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78862" g_stop="78739" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="249" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="314" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="527" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="575" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75163" g_stop="75137" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="602" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E272766" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78862" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCT</genome_strand>
        <mrna_strand>TGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGGGGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324589" ref_strand="+" ref_description="SGN-E324589 [cTOC-9-A23]">
      <seq>gctttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaagcacttgggatgcaagtggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79433" stop="75002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79134" g_stop="79099" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="161" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="286" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="351" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="564" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75302" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="586" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E324589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79134" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGA</genome_strand>
        <mrna_strand>GCTTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340300" ref_strand="+" ref_description="SGN-E340300 [cTOF-2-M11]">
      <seq>tgatctcactctctctcaatctgaacatggcggaagctagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79421" stop="75004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79121" g_stop="79099" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="145" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="270" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="335" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="548" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75304" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="568" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E340300" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79121" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGT</genome_strand>
        <mrna_strand>TGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCTAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264954" ref_strand="+" ref_description="SGN-E264954 [cLEI-10-J23]">
      <seq>ccacgactgatctcactttctattaatctgtagaacatggcggaagcaagtgcaccaactgtaccaagtactgatttgttggactggccaaagaaagattagcgcagaatgttgcatgctgtatatcgagtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagatagatattctaaaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcagaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaaaggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagcgttataggttttgtgaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgacaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgtgatgcaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79428" stop="76128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79128" g_stop="79099" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="280" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="345" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="558" r_length="213" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E264954" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79128" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</genome_strand>
        <mrna_strand>CCACGACTGATCTCACTTTCTATTAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAACTGTACCAAGTACTGATTTGTTGGACTGGCCAAAGAAAGATTAGCGCAGAATGTTGCATGCTGTATATCGAGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGATAGATATTCTAAAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCAGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAAGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGCGTTATAGGTTTTGTGAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGACAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264525" ref_strand="+" ref_description="SGN-E264525 [cLEG-67-G16]">
      <seq>cacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctaccaaaaggcacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79427" stop="76128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79127" g_stop="79099" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="154" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="279" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="344" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="557" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E264525" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79127" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</genome_strand>
        <mrna_strand>CACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298427" ref_strand="+" ref_description="SGN-E298427 [cLET-41-P6]">
      <seq>actgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79423" stop="76128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79123" g_stop="79099" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="147" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="272" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="337" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="550" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E298427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79123" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</genome_strand>
        <mrna_strand>ACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335692" ref_strand="+" ref_description="SGN-E335692 [cTOE-8-G4]">
      <seq>actgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79423" stop="76128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79123" g_stop="79099" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="150" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="275" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="340" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="553" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E335692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79123" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</genome_strand>
        <mrna_strand>ACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303873" ref_strand="+" ref_description="SGN-E303873 [cLEX-4-I9]">
      <seq>ctgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgttcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79422" stop="76128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79122" g_stop="79099" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="146" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="271" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="336" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="550" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E303873" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79122" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTG-TCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</genome_strand>
        <mrna_strand>CTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304784" ref_strand="+" ref_description="SGN-E304784 [cLEX-10-I5]">
      <seq>tgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79164" stop="76128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79100" g_stop="79099" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="127" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="252" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="317" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="530" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E304784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79100" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</genome_strand>
        <mrna_strand>TG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319070" ref_strand="+" ref_description="SGN-E319070 [cTOB-14-P7]">
      <seq>tctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgctattcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79168" stop="76130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79112" g_stop="79099" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="139" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="264" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="329" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76430" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="541" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E319070" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79112" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAA</genome_strand>
        <mrna_strand>TCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTATTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250046" ref_strand="+" ref_description="SGN-E250046 [cLEG-4-C11]">
      <seq>aatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79168" stop="76130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79104" g_stop="79099" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="131" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="256" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="321" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76430" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="533" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E250046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79104" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAA</genome_strand>
        <mrna_strand>AATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318684" ref_strand="+" ref_description="SGN-E318684 [cTOB-9-C6]">
      <seq>caagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79147" stop="76136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78847" g_stop="78739" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="234" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="299" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76436" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="505" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E318684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78847" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTA</genome_strand>
        <mrna_strand>CAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303753" ref_strand="+" ref_description="SGN-E303753 [cLEX-4-O19]">
      <seq>actgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgtttagggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggtttgggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataaggatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaaaggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcatgtgggggatcttgaacgtgcgatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79423" stop="76140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79123" g_stop="79099" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="150" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="275" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="340" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76440" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="542" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E303753" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79123" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAAT</genome_strand>
        <mrna_strand>ACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTAGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTGGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGGATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAAGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCATGTGGGGGATCTTGAACGTGCGATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259548" ref_strand="+" ref_description="SGN-E259548 [cLEG-42-N11]">
      <seq>ccccgggctgcaggccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79428" stop="76142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79127" g_stop="79099" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="44" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="169" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="294" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="359" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76442" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="559" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E259548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79127" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAA</genome_strand>
        <mrna_strand>CACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325020" ref_strand="+" ref_description="SGN-E325020 [cTOC-13-I21]">
      <seq>tttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatccctttgcgtggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79432" stop="76144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79132" g_stop="79099" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="159" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="284" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="349" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76444" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="551" r_length="202" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E325020" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79132" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGAT-CC--TG-ATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATC</genome_strand>
        <mrna_strand>TTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCCTTTGCGTGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323468" ref_strand="+" ref_description="SGN-E323468 [cTOC-7-C21]">
      <seq>tctctctcaatctgtagaacatggcggaagcaagtggaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79168" stop="76145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79112" g_stop="79099" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="139" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="264" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="329" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76445" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="526" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E323468" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79112" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGAT</genome_strand>
        <mrna_strand>TCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGGACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304320" ref_strand="+" ref_description="SGN-E304320 [cLEX-12-E12]">
      <seq>actgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79423" stop="76152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79123" g_stop="79099" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="150" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="275" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="340" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76452" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="530" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E304320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79123" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAAC</genome_strand>
        <mrna_strand>ACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326512" ref_strand="+" ref_description="SGN-E326512 [cTOC-17-O1]">
      <seq>agtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79145" stop="76157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78845" g_stop="78739" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="232" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="297" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76457" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="482" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E326512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78845" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCT</genome_strand>
        <mrna_strand>AGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729397" ref_strand="+" ref_description="SGN-E729397 [LA20DG07]">
      <seq>tcggacgaggctttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctggagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79433" stop="76178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79144" g_stop="79099" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="170" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="295" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="360" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76478" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="524" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E729397" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79144" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTTCACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGT</genome_strand>
        <mrna_strand>TCG-GACGAGGCTTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGGAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710820" ref_strand="+" ref_description="SGN-E710820 [FA56DD11]">
      <seq>cctttttaacgactgatctcactctctctcaatctgtagaacacgttggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggctttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaacccgctttgcgcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggcccaagggcggaactgtcacaagggagcctggtcctgtccagggtggatctagtgttattgctttcgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79426" stop="76183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79134" g_stop="79099" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="161" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="286" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="351" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76483" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="511" r_length="160" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E710820" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79134" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGG-CCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGC</genome_strand>
        <mrna_strand>CCTTTTTAACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACACGTTGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGCTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCCGCTTTGCGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCCAAGGGCGGAACTGTCACAAGGGAGCCTGGTCCTGTCCAGGGTGGATCTAGTGTTATTGCTTTCGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331223" ref_strand="+" ref_description="SGN-E331223 [cTOD-6-C12]">
      <seq>actttaccacgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79434" stop="76194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79134" g_stop="79099" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="158" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="283" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="348" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76494" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="496" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E331223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79134" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTG</genome_strand>
        <mrna_strand>ACTTTACCACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312674" ref_strand="+" ref_description="SGN-E312674 [cLEZ-20-N8]">
      <seq>acgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79426" stop="76216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79126" g_stop="79099" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="150" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="275" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="340" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76516" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="466" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E312674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79126" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATC</genome_strand>
        <mrna_strand>ACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318737" ref_strand="+" ref_description="SGN-E318737 [cTOB-9-H16]">
      <seq>tgttggagtggccaaagaaagataagcgcaaaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacacaatgttctgggatgaaattgttgaggcagagagatattccacaggagaagtattccaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctcttgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79117" stop="76224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78817" g_stop="78739" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="204" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="269" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76524" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="387" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E318737" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78817" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTAT</genome_strand>
        <mrna_strand>TGTTGGAGTGGCCAAAGAAAGATAAGCGCAAAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACACAATGTTCTGGGATGAAATTGTTGAGGCAGAGAGATATTCCACAGGAGAAGTATTCCAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTCTTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323359" ref_strand="+" ref_description="SGN-E323359 [cTOC-10-C23]">
      <seq>tcactctctctcaatctgaacatggcnnngagcaagtgcgccagctgtacgagagtactgagttattggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79149" stop="76225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79116" g_stop="79099" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="142" r_length="124" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="267" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="332" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76525" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="449" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E323359" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79116" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGA-AGCAAGTGCACCAGCTGTACCA-AGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTA</genome_strand>
        <mrna_strand>TCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCNNNGAGCAAGTGCGCCAGCTGTACGAGAGTACTGAGTTATTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318766" ref_strand="+" ref_description="SGN-E318766 [cTOB-11-I19]">
      <seq>ggcactttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaaaggtggaactgtcacaagggagcctgatcctgtcaagggtggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79435" stop="76264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79137" g_stop="79099" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="164" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="289" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="354" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76564" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="432" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E318766" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79137" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCT</genome_strand>
        <mrna_strand>GGCACTTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAAGGTGGAACTGTCACAAGGGAGCCTGATCCTGTCAAGGGTGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335762" ref_strand="+" ref_description="SGN-E335762 [cTOE-19-M7]">
      <seq>cggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79062" stop="76274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78762" g_stop="78739" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="149" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="214" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76574" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="282" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E335762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78762" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAA</genome_strand>
        <mrna_strand>CGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277909" ref_strand="-" ref_description="SGN-E277909 [cLEL-5-N1](-)">
      <seq>gcacgagctctctcttaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgacctgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79161" stop="76278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="144" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="269" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="334" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76578" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="398" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E277909" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277909" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTG</genome_strand>
        <mrna_strand>T-GAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGACCTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244937" ref_strand="+" ref_description="SGN-E244937 [cLEF-2-K21]">
      <seq>tgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79421" stop="76291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79121" g_stop="79099" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="148" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="273" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="338" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76591" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="389" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E244937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79121" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGG</genome_strand>
        <mrna_strand>TGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310380" ref_strand="+" ref_description="SGN-E310380 [cTOA-10-C8]">
      <seq>ggaagcaagtgcaccagctgtaccaagtgctgacttgttggagtggccaaagaaagataagcgcacaatgttgcatgctggatatcgtgtcggtgaccgtgaacgtaccatcaagttttacacaaaatgttctgggatgaaattgttgaggcagagagatattccagaggagaaggattcgaatgcgtttcttggttttggccctgaagagtctcactttgtgggtgagtagacatataaatatggagttgataagtatgacatcagaaccggctttgggcattttgctatagccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79152" stop="76301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78852" g_stop="78739" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="0.94"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="239" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="304" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76601" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="345" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E310380" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78852" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAAC</genome_strand>
        <mrna_strand>GGAAGCAAGTGCACCAGCTGTACCAAGTGCTGACTTGTTGGAGTGGCCAAAGAAAGATAAGCGCACAATGTTGCATGCTGGATATCGTGTCGGTGACCGTGAACGTACCATCAA............................................................................GTTTTACACAAAATGTTCTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGGATTCGAATGCGTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGGTGAGTAGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAGTTGATAAGTATGACATCAGAACCGGCTTTGGGCATTTTGCTATAGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325103" ref_strand="+" ref_description="SGN-E325103 [cTOC-13-A13]">
      <seq>taccacgactgatctcactctctctcaatctgaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgcttaggcagagagatattccagaggagaagtattccaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79430" stop="76416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79130" g_stop="79099" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78860" g_stop="78739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="154" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="279" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="344" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76632" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="354" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E325103" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79130" e_stop="79099"/>
          <exon e_start="78860" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAAC</genome_strand>
        <mrna_strand>TACCACGACTGATCTCACTCTCTCTCAATCTG..............................................................................................................................................................................................................................................AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGCTTAGGCAGAGAGATATTCCAGAGGAGAAGTATTCCAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317282" ref_strand="+" ref_description="SGN-E317282 [cTOA-28-D4]">
      <seq>tttcctctctctacatattttttttctttaatttagggttttactctgttcttcaattcttgatggcattgtaaagagtttctagtaaatgctttgagtaatttttcatcttggaagatttgtagggattttgtgataaaaattagtgatacttctgtatgatttgtgttctttgttgtttgttttgagatttctttctttcttagaatctacaatttttatttgtagtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgantagtatgacatcggaaccggctttgggcattttgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79391" stop="76430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79091" g_stop="78739" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="478" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76730" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="531" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E317282" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79091" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATT</genome_strand>
        <mrna_strand>TTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGANTAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359175" ref_strand="+" ref_description="SGN-E359175 [cLHT-11-B1]">
      <seq>tttgttttcttctatttagggttttactctgctcttcaattcttgatcgcattgtaaagagtttctagtaaatgctttgagaaatttttcatcttttgaagatttgtagggattttgtgataaaaattagtgaatacttctgtatgatttgtgttctttgttgtttgttttgagatttctctctcatagaatctacaatttttatttgtagtagaacatggcggaaggaagtgcaccagcagtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79374" stop="76457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79074" g_stop="78739" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="461" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76757" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="487" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-E359175" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79074" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATC-TTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTG-ATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATC</genome_strand>
        <mrna_strand>TTTGTTTTCTTCTATTTAGGGTTTTACTCTGCTCTTCAATTCTTGATCGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGAAATTTTTCATCTTTTGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGAATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTC--TCTCTCATAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGGAAGTGCACCAGCAGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717501" ref_strand="+" ref_description="SGN-E717501 [FC01BF11]">
      <seq>gactcacggacttcttcccctcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggatctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcatccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggaagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaagtaggatagagtgttgaggcataggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87393" stop="89883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87692" g_stop="87881" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="346" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="473" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89583" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="633" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E717501" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87692" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGAT</genome_strand>
        <mrna_strand>GACTCACGGACTTCTTCCCCTCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGATCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCATCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGAAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AAGTAGGATAGAGTGTTGAGGCATAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393222" ref_strand="+" ref_description="SGN-E393222 [TUS-38-M11]">
      <seq>acggacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87397" stop="89829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87697" g_stop="87881" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="341" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="468" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89529" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="574" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E393222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87697" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTA</genome_strand>
        <mrna_strand>ACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699779" ref_strand="+" ref_description="SGN-E699779 [FA11AG06]">
      <seq>cggacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtaaggaaattcagggcagatggtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87398" stop="90601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87698" g_stop="87881" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="340" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="467" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89465" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="509" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89466" i_stop="90047" i_length="582">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90048" g_stop="90301" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="763" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E699779" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87698" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89465"/>
          <exon e_start="90048" e_stop="90301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACC</genome_strand>
        <mrna_strand>CGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAAGGAAATTCAGGGCAGATGGTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728043" ref_strand="+" ref_description="SGN-E728043 [LA16CB05]">
      <seq>cgcacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcangcgttggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaaggtangcctttgaggagagctctaaagggcttacgcgcctggatcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87398" stop="90019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87698" g_stop="87881" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="340" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="467" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89719" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="763" r_length="296" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E728043" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87698" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAG</genome_strand>
        <mrna_strand>CGCACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCANGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAAGGTANGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207757" ref_strand="+" ref_description="SGN-E207757 [cLEC-32-G22]">
      <seq>cggacttcttcccatcaccatcttcttctatttttgacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87398" stop="88925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87698" g_stop="87881" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="340" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88625" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="424" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E207757" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87698" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACA</genome_strand>
        <mrna_strand>CGGACTTCTTCCCATCACCATCTTCTTCTATTTTTGACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317089" ref_strand="+" ref_description="SGN-E317089 [cTOA-27-F15]">
      <seq>ggacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgagatggccaccaagagtgttgccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87399" stop="89962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87699" g_stop="87881" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="339" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="466" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89662" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="704" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E317089" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87699" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTG</genome_strand>
        <mrna_strand>GGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGA-GATGGCCACCAAGAGTGTTGCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321140" ref_strand="+" ref_description="SGN-E321140 [cTOB-13-O14]">
      <seq>ggacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87399" stop="89890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87699" g_stop="87881" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="339" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="466" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89590" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="633" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E321140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87699" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTG</genome_strand>
        <mrna_strand>GGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320293" ref_strand="+" ref_description="SGN-E320293 [cTOB-21-B12]">
      <seq>ggacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaaaccggagacataccaattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87399" stop="89831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87699" g_stop="87881" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="339" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="466" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89531" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="574" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E320293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87699" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATT</genome_strand>
        <mrna_strand>GGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAAACCGGAGACATACCAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316665" ref_strand="+" ref_description="SGN-E316665 [cTOB-7-F21]">
      <seq>ggacttcttcgggtcaccatcttcgggtatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagtttcgtcagcagctaccatcgtggcttcctgaaggaggagagagtgttgaggcagaggactttgagaaattggctaaagagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87426" stop="88965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87699" g_stop="87881" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="340" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88665" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="464" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E316665" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87699" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGC-TCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTT</genome_strand>
        <mrna_strand>GGACTTCTTCGGGTCACCATCTTCGGGTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTTCGTCAGCAGCTACCATCGTGGCTTCCTG................................................................................................................AAGGAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAAGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739949" ref_strand="+" ref_description="SGN-E739949 [LC19BH07]">
      <seq>gacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggatagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87400" stop="90110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87700" g_stop="87881" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="338" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="465" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89810" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="852" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E739949" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87700" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGG</genome_strand>
        <mrna_strand>GACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGATAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302066" ref_strand="+" ref_description="SGN-E302066 [cLEW-19-E5]">
      <seq>ttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaagagagagtgttgaagcataagactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87403" stop="89773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87703" g_stop="87881" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="335" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="462" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89473" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="512" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E302066" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87703" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGAC</genome_strand>
        <mrna_strand>TTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAAGAGAGAGTGTTGAAGCATAAGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278712" ref_strand="+" ref_description="SGN-E278712 [cLER-2-E19]">
      <seq>ttctttccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87403" stop="88967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87703" g_stop="87881" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="335" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88667" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="461" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E278712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87703" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCA</genome_strand>
        <mrna_strand>TTCTTTCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329503" ref_strand="+" ref_description="SGN-E329503 [cTOD-11-A9]">
      <seq>ttcttcccatcaccatcttcttctatttttcacaagcatcttctttgctggaacaaattgttctttgcctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttnttcatcttctttttatgaacaacccaaagtatcccaattgggtacctttcatccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgcttaacctaagaggaatgattcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87403" stop="88698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87703" g_stop="87881" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88398" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="304" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E329503" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87703" e_stop="87881"/>
          <exon e_start="88274" e_stop="88398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATA</genome_strand>
        <mrna_strand>TTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCATCTTCTTTGCTGGAACAAATTGTTCTTTGCCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTNTTCATCTTCTTTTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCATCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTTAACCTAAGAGGAATGATTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730693" ref_strand="+" ref_description="SGN-E730693 [LA24DF02]">
      <seq>cctttcatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgtcggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcangtggacccttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87405" stop="90086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87705" g_stop="87881" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="333" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="460" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89786" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="823" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E730693" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87705" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTT</genome_strand>
        <mrna_strand>CCTTTCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTCGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCANGTGGACCCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204103" ref_strand="+" ref_description="SGN-E204103 [cLEC-27-C21]">
      <seq>tcccatcaccatcttcttctatttttcacaagccatttctttgctggaacaaattgctctttgtctctgtgaaattaatctctctttgttgtataactggctcagactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcactgaagccattgtatgctgaacctaataggaatgattcaatagttccgtcagcagctaccatcgtggctcctgacgtaggagagagtgttgaggcagaggactttgacaaattggctaatgagcttcaaaatgcttctcctcttgaggttatggacaaagcacttgagaaatttggagatgacattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87407" stop="88956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87707" g_stop="87881" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="331" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88656" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="446" r_length="115" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E204103" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87707" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGC</genome_strand>
        <mrna_strand>TCCCATCACCATCTTCTTCTATTTTTCACAAGCCATTTCTTTGCTGGAACAAATTGCTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTATAACTGGCTCAGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCACTGAAGCCATTGTATGCTGAACCTAATAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................ACGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGACAAATTGGCTAATGAGCTTCAAAATGCTTCTCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740597" ref_strand="+" ref_description="SGN-E740597 [LC22AE09]">
      <seq>ccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87409" stop="90111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87709" g_stop="87881" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="329" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="456" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89811" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="844" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E740597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87709" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGT</genome_strand>
        <mrna_strand>CCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747293" ref_strand="+" ref_description="SGN-E747293 [GI|47104669]">
      <seq>atcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagacaaataagtttttattactttcccatcccatccttctcaaatagagaagtatatatgtcttgagggctcaattttgttgagtgtttacttctccatattatagattttgcccatcttctctcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87411" stop="91087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87711" g_stop="87881" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="327" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="454" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="90785" g_length="1362"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="1816" r_length="1362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1817" polyA_stop="1835"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E747293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1816</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87711" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="90785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTC</genome_strand>
        <mrna_strand>ATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206177" ref_strand="+" ref_description="SGN-E206177 [cLEC-29-E23]">
      <seq>tcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87412" stop="89882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87712" g_stop="87881" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="326" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="453" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89582" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="612" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E206177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87712" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGA</genome_strand>
        <mrna_strand>TCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206508" ref_strand="+" ref_description="SGN-E206508 [cLEC-23-L19]">
      <seq>tcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87412" stop="89767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87712" g_stop="87881" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="326" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="453" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89467" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="497" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E206508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87712" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTG</genome_strand>
        <mrna_strand>TCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306888" ref_strand="+" ref_description="SGN-E306888 [cLEY-11-P24]">
      <seq>tttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87428" stop="89882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87728" g_stop="87881" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="310" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="437" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89582" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="596" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E306888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87728" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGA</genome_strand>
        <mrna_strand>TTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300943" ref_strand="+" ref_description="SGN-E300943 [cLEW-8-E12]">
      <seq>tttttcacacgcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggacgcgttcggcagtgaagccattgtatgctgaacctaagacgaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcaaaggactttgagaaattggctcaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcactggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87428" stop="89802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87728" g_stop="87881" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="310" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="437" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89502" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="516" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E300943" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87728" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGG</genome_strand>
        <mrna_strand>TTTTTCACACGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGACGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGACGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAAAGGACTTTGAGAAATTGGCTCAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318787" ref_strand="+" ref_description="SGN-E318787 [cTOB-11-D5]">
      <seq>tttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcaggtacggttttttaaatcttgctttagtgtgagcctagtttctgttcaaatgattttaggttgtattatatggataatgttctttatgatgtgcacaataaatgttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87446" stop="89079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87746" g_stop="87881" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="292" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88779" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="530" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E318787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87746" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAA</genome_strand>
        <mrna_strand>TTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738135" ref_strand="+" ref_description="SGN-E738135 [LC12CA11]">
      <seq>acaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaacctttgcacaaggcagttctacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87455" stop="90258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87755" g_stop="87881" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="283" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="410" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89958" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="945" r_length="535" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E738135" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87755" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACC-TTGCACAAGGCCAGTTCTACCA</genome_strand>
        <mrna_strand>ACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTTGCACAAGG-CAGTTCTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319409" ref_strand="+" ref_description="SGN-E319409 [cTOB-15-D3]">
      <seq>ttgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcacaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaaaatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87460" stop="89837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87760" g_stop="87881" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="278" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="405" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89537" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="519" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E319409" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87760" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACAC</genome_strand>
        <mrna_strand>TTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCACAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAAATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319410" ref_strand="+" ref_description="SGN-E319410 [cTOB-15-D7]">
      <seq>ttgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtacgagagagtgttgaggcaaaggactttgagaaattggctaatgagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaaactggacgaccatacagagtattcaaccttgatactgggaggttgaacccggagacataccaattatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87460" stop="89833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87760" g_stop="87881" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="278" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="405" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89533" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="516" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E319410" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87760" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTT-AACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTG</genome_strand>
        <mrna_strand>TTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTACGAGAGAGTGTTGAGGCAAAGGACTTTGAGAAATTGGCTAATGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAAACTGGACGACCATACAGAGTATTCAACCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376498" ref_strand="+" ref_description="SGN-E376498 [TUS-17-P13]">
      <seq>gaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87477" stop="89941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87777" g_stop="87881" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="261" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="388" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89641" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="606" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E376498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87777" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATG</genome_strand>
        <mrna_strand>GAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208382" ref_strand="+" ref_description="SGN-E208382 [cLEC-37-M22]">
      <seq>gaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagcgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87477" stop="89767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87777" g_stop="87881" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="261" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="388" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89467" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="432" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E208382" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87777" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTG</genome_strand>
        <mrna_strand>GAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGCGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746722" ref_strand="+" ref_description="SGN-E746722 [GI|51457939]">
      <seq>atggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87503" stop="90747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87803" g_stop="87881" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="235" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="362" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="90447" g_length="1024"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="1386" r_length="1024" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E746722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87803" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="90447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGA</genome_strand>
        <mrna_strand>ATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205800" ref_strand="+" ref_description="SGN-E205800 [cLEC-20-K3]">
      <seq>agctttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87511" stop="89885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87811" g_stop="87881" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="227" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="354" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89585" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="516" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E205800" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87811" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTC</genome_strand>
        <mrna_strand>AGCTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211885" ref_strand="+" ref_description="SGN-E211885 [cLEC-66-E11]">
      <seq>cgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89170" stop="90439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89470" g_stop="90139" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E211885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89470" e_stop="90139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTG</genome_strand>
        <mrna_strand>CGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726164" ref_strand="+" ref_description="SGN-E726164 [LA11AA10]">
      <seq>ggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89366" stop="90791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89666" g_stop="90491" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E726164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89666" e_stop="90491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAA</genome_strand>
        <mrna_strand>GGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726838" ref_strand="+" ref_description="SGN-E726838 [LA12DH03]">
      <seq>ggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtaaggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaaaagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagccaatggtgtttttgatcaatcacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89366" stop="90779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89666" g_stop="90479" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E726838" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89666" e_stop="90479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCA</genome_strand>
        <mrna_strand>GGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAAGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAAAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCCAATGGTGTTTTTGATCAATCACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726752" ref_strand="+" ref_description="SGN-E726752 [LA12CH07]">
      <seq>gtgccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagntgtttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89420" stop="90881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89718" g_stop="90581" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="864" r_length="864" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E726752" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89718" e_stop="90581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTC</genome_strand>
        <mrna_strand>GTGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGNTGTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214550" ref_strand="+" ref_description="SGN-E214550 [cLEC-79-M18]">
      <seq>agaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacnatactcttcttcccaaagcactcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89454" stop="90675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89754" g_stop="90375" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E214550" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89754" e_stop="90375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCA</genome_strand>
        <mrna_strand>AGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACNATACTCTTCTTCCCAAAGCACTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738261" ref_strand="+" ref_description="SGN-E738261 [LC13AA08]">
      <seq>cgtggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagacaaataaagtttttattactttcccatcccatccttctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89501" stop="91005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89800" g_stop="90705" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="907" r_length="907" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E738261" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89800" e_stop="90705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAAT-AAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAAT</genome_strand>
        <mrna_strand>CGTGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709648" ref_strand="+" ref_description="SGN-E709648 [FA52CG07]">
      <seq>ctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89537" stop="90880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89837" g_stop="90580" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E709648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89837" e_stop="90580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTT</genome_strand>
        <mrna_strand>CTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730993" ref_strand="+" ref_description="SGN-E730993 [LA25DC12]">
      <seq>cgcttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89565" stop="90937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89863" g_stop="90637" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E730993" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89863" e_stop="90637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATT</genome_strand>
        <mrna_strand>CGCTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703572" ref_strand="+" ref_description="SGN-E703572 [FA21DE05]">
      <seq>catgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacantagaagacaaataagtttttattactttcccatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89577" stop="90991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89877" g_stop="90691" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E703572" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89877" e_stop="90691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCC</genome_strand>
        <mrna_strand>CATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACANTAGAAGACAAATAAGTTTTTATTACTTTCCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248679" ref_strand="+" ref_description="SGN-E248679 [cLEF-58-O17]">
      <seq>ggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89716" stop="90868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90016" g_stop="90568" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E248679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90016" e_stop="90568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTAT</genome_strand>
        <mrna_strand>GGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733919" ref_strand="+" ref_description="SGN-E733919 [LB11BB12]">
      <seq>cttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagacaaataagtttttattactttcccatcccatccttctcaaatagagaagtatatatgtcttgagggctcaattttgttgagtgtttacttctccatattatagattttgcccatcttctctcattnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89718" stop="91088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90018" g_stop="90798" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E733919" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90018" e_stop="90798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTCATTCTTCTTCTAA</genome_strand>
        <mrna_strand>CTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTCATTNAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538875" ref_strand="+" ref_description="SGN-E538875 [TUS-58-F14](-)">
      <seq>caacatcaaggatgaaactgtaaatggcgctgcccaancaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagcacaaataagtttttattactttcccatcccatcccttctcnaaatagagaagtnatatatgtcttgagggctcaaattttgttgagtgtttacttctccantattatagattttgcccatcttctctcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89730" stop="91088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90030" g_stop="90798" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E538875" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90030" e_stop="90798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAG-ACAAATAAGTTTTTATTACTTTCCCATCCCAT-CCTTCTC-AAATAGAGAAGT-ATATATGTCTTGAGGGCTC-AATTTTGTTGAGTGTTTACTTCTCCA-TATTATAGATTTTGCCCATCTTCTCTCATTCTTCTTCTAA</genome_strand>
        <mrna_strand>CAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAANCAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGCACAAATAAGTTTTTATTACTTTCCCATCCCATCCCTTCTCNAAATAGAGAAGTNATATATGTCTTGAGGGCTCAAATTTTGTTGAGTGTTTACTTCTCCANTATTATAGATTTTGCCCATCTTCTCTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353276" ref_strand="+" ref_description="SGN-E353276 [cTOS-14-L24]">
      <seq>aaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89737" stop="90924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90037" g_stop="90629" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E353276" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90037" e_stop="90629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGC</genome_strand>
        <mrna_strand>AAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293834" ref_strand="+" ref_description="SGN-E293834 [cLET-37-C12]">
      <seq>aagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89858" stop="90613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90158" g_stop="90313" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E293834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90158" e_stop="90313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTG</genome_strand>
        <mrna_strand>AAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376497" ref_strand="+" ref_description="SGN-E376497 [TUS-17-P13](-)">
      <seq>ggttctggtgtgaaagtagggaaattcagggcaaatggtgaccagaaagcatttgcacaaaaagaatttcagcatggcagcttccctacaataattttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagacaaataagtttttattactttcccatcccatccttctcaaatagagaagtatatatgtcttgagggctcaattttgttgagtgtttacttctccatattatagattttgcccatcttctctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="89959" stop="91086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90259" g_stop="90785" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="545"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E376497" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90259" e_stop="90785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTC</genome_strand>
        <mrna_strand>GGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAAATGGTGACCAGAAAGCATTTGCACAAAAAGAATTTCAGCATGGCAGCTTCCCTACAATAATTTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218141" ref_strand="+" ref_description="SGN-E218141 [cLEL-23-F10](-)">
      <seq>tcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagacaaataagtttttattactttcccatcccatccttctcaaatagagaagtatatatgtcttgagggctcaattttgttgagtgtttacttctccatattatagattttgcccatcttctctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="90059" stop="91086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90359" g_stop="90785" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="445"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E218141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90359" e_stop="90785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTC</genome_strand>
        <mrna_strand>TCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226877" ref_strand="+" ref_description="SGN-E226877 [cLEL-26-P5](-)">
      <seq>ctccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagacaaataagtttttattactttcccatcccatccttctcaaatagagaagtatataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="90114" stop="91018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90414" g_stop="90717" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="325"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E226877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90414" e_stop="90717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATAT</genome_strand>
        <mrna_strand>CTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226776" ref_strand="+" ref_description="SGN-E226776 [cLEL-26-P5](-)">
      <seq>gcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagacaaataagtttttattactttcccatcccatccttctcaaatagagaagtatataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="90124" stop="91018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90424" g_stop="90717" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="295" polyA_stop="315"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E226776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90424" e_stop="90717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATAT</genome_strand>
        <mrna_strand>GCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272877" ref_strand="+" ref_description="SGN-E272877 [cLEM-25-D21]">
      <seq>taggtttcccaaaatttccttctcctttctctctttgttttggtgtcgtctgcgtcaattttcttcctcctcagataatggatgataaggttgttactatggatgatcaaattgtatcagagcttacaatcccagaaaatgtcgccaaagaattattacttgtgtcaaactcatcttctttagaaacggcactcgacaagctgatacaactttccaaggaggggggtggacggttagatctgtcgtccaagaatgttgtcaccactgtcctccatctctgccagtctctgtcatctatctcttaccgtaacctccttttattgtctcttaaggtactcagaaatctgtgtgctggggagataagaaatcagaatggctttcttcaacaaagaggagttgaaattgtcttggatgttattatgtctgtaggactttctcctgatcctgattgtatgattattcgagtggggctgcaacttctaggaaactactcagtgggtggaggagaacgtcaatgtgatgtgtggtaccaattgtttcctcataagttcttgaagattgctagagttagaaaccaggaaatatgtgatcctttatgtatggtcatttacacttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="91341" stop="92738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91641" g_stop="91714" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91715" i_stop="91892" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91893" g_stop="92438" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="620" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E272877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91641" e_stop="91714"/>
          <exon e_start="91893" e_stop="92438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTTTCCCAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAGGTAAGACTTAATTGTTCCGTTCAAATTTACTTTCCTCTCTTTTTAAGCTTCAGATTTTAGTTTATGTTCATATGTTCAATACTCATACAGTATGCACTTTTTCAAGTGCAATTAAAAGTTGTTTTAGCAAATTGATCCTTCTCATTAATTTGATCATTTTTTCTGCATTCCTTGTTAGATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGT</genome_strand>
        <mrna_strand>TAGGTTTCCCAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAG..................................................................................................................................................................................ATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541176" ref_strand="+" ref_description="SGN-E541176 [TUS-61-N8]">
      <seq>ccaaaatttccttctcctttctctctttgttttggtgtcgtctgcgtcaattttcttcctcctcagataatggatgataaggttgttactatggatgatcaaattgtatcagagcttacaatcccagaaaatgtcgccaaagaattattacttgtgtcaaactcatcttctttagaaacggcactcgacaagctgatacaactttccaaggaggggggtggacggttagatctgtcgtccaagaatgttgtcaccactgtcctccatctctgccagtctctgtcatctatctcttaccgtaacctccttttattgtctcttaaggtactcagaaatctgtgtgctggggagataagaaatcagaatggctttcttcaacaaagaggagttgaaattgtcttggatgttattatgtctgtaggactttctcctgatcctgattgtatgattattcgagtggggctgcaacttctaggaaactactcagtgggtggaggagaacgtcaatgtgatgtgtggtaccaattgtttcctcataagttcttgaagattgctagagttagaaaccaggagatatgtgatcctttatgtatggtcatttacacccgctgtgatggtacggatggactgcttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="91349" stop="92762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91649" g_stop="91714" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91715" i_stop="91892" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91893" g_stop="92462" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="636" r_length="570" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E541176" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91649" e_stop="91714"/>
          <exon e_start="91893" e_stop="92462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAGGTAAGACTTAATTGTTCCGTTCAAATTTACTTTCCTCTCTTTTTAAGCTTCAGATTTTAGTTTATGTTCATATGTTCAATACTCATACAGTATGCACTTTTTCAAGTGCAATTAAAAGTTGTTTTAGCAAATTGATCCTTCTCATTAATTTGATCATTTTTTCTGCATTCCTTGTTAGATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACC</genome_strand>
        <mrna_strand>CCAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAG..................................................................................................................................................................................ATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAGATATGTGATCCTTTATGTATGGTCATTTACACCCGCTGTGATGGTACGGATGGACTGCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293731" ref_strand="+" ref_description="SGN-E293731 [cLET-21-N24]">
      <seq>caaaatttccttctcctttctctctttgttttggtgtcgtctgcgtcaattttcttcctcctcagataatggatgataaggttgttactatggatgatcaaattgtatcagagcttacaatcccagaaaatgtcgccaaagaattattacttgtgtcaaactcatcttctttagaaacggcactcgacaagctgatacaactttccaaggaggggggtggacggttagatctgtcgtccaagaatgttgtcaccactgtcctccatctctgccagtctctgtcatctatctcttaccgtaacctccttttattgtctcttaaggtactcagaaatctgtgtgctggggagataagaaatcagaatggctttcttcaacaaagaggagttgaaattggcttggatgttattatgtctgtaggactttctcctgatcctgattgtatgattattcgagtggggctgcaacttctaggaaactactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="91350" stop="92611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91650" g_stop="91714" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91715" i_stop="91892" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91893" g_stop="92311" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="484" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E293731" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91650" e_stop="91714"/>
          <exon e_start="91893" e_stop="92311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAGGTAAGACTTAATTGTTCCGTTCAAATTTACTTTCCTCTCTTTTTAAGCTTCAGATTTTAGTTTATGTTCATATGTTCAATACTCATACAGTATGCACTTTTTCAAGTGCAATTAAAAGTTGTTTTAGCAAATTGATCCTTCTCATTAATTTGATCATTTTTTCTGCATTCCTTGTTAGATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTC</genome_strand>
        <mrna_strand>CAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAG..................................................................................................................................................................................ATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGGCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249842" ref_strand="+" ref_description="SGN-E249842 [cLEF-57-G16]">
      <seq>gcttgtgtcaaactcatcttctttagaaacggcactcgacaagctgatacaactttccaaggaggggggtggacggttagatctgtcgtccaagaatgttgtcaccactgtcctccatctctgccagtctctgtcatctatctcttaccgtaacctccttttattgtctcttaaggtactcagaaatctgtgtgctggggagataagaaatcagaatggctttcttcaacaaagaggagttgaaattgtcttggatgttattatgtctgtaggactttctcctgatcctgattgtatgattattcgagtggggctgcaacttctaggaaactactcagtgggtggaggagaacgtcaatgtgatgtgtggtaccaattgtttcctcataagttcttgaagattgctagagttagaaaccaggaaatatgtgatcctttatgtatggtcatttacacttgctgtgatggtacggatggactgcttaccgatttatgttcagagcaagggttgcccattctgtttgaaattttgcgtactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="91677" stop="92816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91976" g_stop="92516" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E249842" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91976" e_stop="92516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACCGATTTATGTTCAGAGCAAGGGTTGCCCATTCTGTTTGAAATTTTGCGTACTGCA</genome_strand>
        <mrna_strand>GCTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACCGATTTATGTTCAGAGCAAGGGTTGCCCATTCTGTTTGAAATTTTGCGTACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698860" ref_strand="+" ref_description="SGN-E698860 [FA07DC08]">
      <seq>atgattattcgagtggggctgcaactgctaggaaactactcagtgggtggaggagatcgtcaatgtgatgtgtggtaccaattgtttcctcataagttcttgaagattgctagagttagaaaccaggaaatatgtgatcctttatgtatggtcatttacacttgctgtgatggtacggatggactgcttaccgatttatgttcagagcaagggttgcccattctgtttgaaattttgcgtactgcatcagccgttggtcttaaagaagtttggttgaagttgttactctcaaaactttgcattgagggctcccacatctcatcaattttcttcaaattacattcatatccttccgttgaggacaatggtgttgttacacatgtagctgatcagtttgttattgagcagccttatctcttgagtatactttcagaaatcttaaatgaacgagtagagcatattgctgcttctcatgattttgctcgaagtatctttgggatattgaacagtgcttctggggttgttgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="91971" stop="93194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92271" g_stop="92523" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92524" i_stop="92615" i_length="92">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92616" g_stop="92894" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="532" r_length="279" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E698860" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92271" e_stop="92523"/>
          <exon e_start="92616" e_stop="92894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACCGATTTATGTTCAGAGCAAGGGTTGCCCATTCTGTTTGAAATTTTGCGTACTGCATCAGCCGGTAAAGACCAGTGAATTTTGTAACTTCTGATTTAATAGAACTTCTGTTATTTGATTATTATGGTAAGCTTATGCGTTCATACTCTTTTGCAGTTGGTCTTAAAGAAGTTTGGTTGAAGTTGTTACTCTCAAAACTTTGCATTGAGGGCTCCCACATCTCATCAATTTTCTTCAAATTACATTCATATCCTTCCGTTGAGGACAATGGTGTTGTTACACATGTAGCTGATCAGTTTGTTATTGAGCAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTT</genome_strand>
        <mrna_strand>ATGATTATTCGAGTGGGGCTGCAACTGCTAGGAAACTACTCAGTGGGTGGAGGAGATCGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACCGATTTATGTTCAGAGCAAGGGTTGCCCATTCTGTTTGAAATTTTGCGTACTGCATCAGCCG............................................................................................TTGGTCTTAAAGAAGTTTGGTTGAAGTTGTTACTCTCAAAACTTTGCATTGAGGGCTCCCACATCTCATCAATTTTCTTCAAATTACATTCATATCCTTCCGTTGAGGACAATGGTGTTGTTACACATGTAGCTGATCAGTTTGTTATTGAGCAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGCTGCTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAACAGTGCTTCTGGGGTTGTTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212054" ref_strand="+" ref_description="SGN-E212054 [cLEC-66-P18]">
      <seq>gaaattttgcgtactgcatcagccgttggtcttaaagaagtttggttgaagttgttactctcaaaactttgcattgagggctcccacatctcatcaattttcttcaaattacattcatatccttccgttgaggacaatggtgttgttacacatgtagctgatcagtttgttattgagcagccttatctcttgagtatactttcagaaatcttaaatgaacgagtagagcatattgttgtttctcatgattttgctcgaagtatctttgggatattgaagagtgcttctggggttgttgatttttcaataagagggaaaagtgatcttccagtggggtctgctcctattgatgttctaggatactctctcaccctcatgagagatatttgcgcttctgatcacttatcaagctctaaggaagaaagttcaaaggatgttgtggacgtacttgtttcctctgggcttattgaatttcttttgaacttgcttcgggatcttgaacctccaacgacaattaggaacgcaatgaagccggatcagatcaaggaggggacaataccttcttcatttaggtgttgtccataccaaagtttccggagagatattgttgccatccttggaaattgtgcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="92199" stop="93523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92499" g_stop="92523" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92524" i_stop="92615" i_length="92">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92616" g_stop="93223" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="633" r_length="608" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E212054" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92499" e_stop="92523"/>
          <exon e_start="92616" e_stop="93223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTTGCGTACTGCATCAGCCGGTAAAGACCAGTGAATTTTGTAACTTCTGATTTAATAGAACTTCTGTTATTTGATTATTATGGTAAGCTTATGCGTTCATACTCTTTTGCAGTTGGTCTTAAAGAAGTTTGGTTGAAGTTGTTACTCTCAAAACTTTGCATTGAGGGCTCCCACATCTCATCAATTTTCTTCAAATTACATTCATATCCTTCCGTTGAGGACAATGGTGTTGTTACACATGTAGCTGATCAGTTTGTTATTGAGCAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTAT</genome_strand>
        <mrna_strand>GAAATTTTGCGTACTGCATCAGCCG............................................................................................TTGGTCTTAAAGAAGTTTGGTTGAAGTTGTTACTCTCAAAACTTTGCATTGAGGGCTCCCACATCTCATCAATTTTCTTCAAATTACATTCATATCCTTCCGTTGAGGACAATGGTGTTGTTACACATGTAGCTGATCAGTTTGTTATTGAGCAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAAGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259760" ref_strand="+" ref_description="SGN-E259760 [cLEG-42-N16]">
      <seq>cagccttatctcttgagtatactttcagaaatcttaaatgaacgagtagagcatattgttgtttctcatgattttgctcgaagtatctttgggatattgaagagtgcttctggggttgttgatttttcaataagagggaaaagtgatcttccagtggggtctgctcctattgatgttctaggatactctctcaccctcatgagagatatttgcgcttctgatcacttatcaagctctaaggaagaaagttcaaaggatgttgtggacgtacttgtttcctctgggcttattgaatttcttttgaacttgcttcgggatcttgaacctccaacgacaattaggaacgcaatgaagccggatcagatcaaggaggggacaataccttcttcatttaggtgttgtccataccaaggtttccggagagatattgttgccatccttggaaattgtgcttataggagaaggcatgtccaagatgagattagggataaaaatgggatccttttactgctacaacagtgtgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="92468" stop="93594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92768" g_stop="93294" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E259760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92768" e_stop="93294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTAT</genome_strand>
        <mrna_strand>CAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368323" ref_strand="+" ref_description="SGN-E368323 [TUS-26-O2]">
      <seq>cagccttatctcttgagtatactttcagaaatcttaaatgaacgagtagagcatattgttgtttctcatgattttgctcgaagtatctttgggatattgaagagtgcttctggggttgttgatttttcaataagagggaaaagtgatcttccagtggggtctgctcctattgatgttctaggatactctctcaccctcatgagagatatttgcgcttctgatcacttatcaagctctaaggaagaaagttcaaaggatgttgtggacgtacttgtttcctctgggcttattgaatttcttttgaacttgcttcgggatcttgaacctccaacgacaattaggaacgcaatgaagccggatcagatcaaggaggggacaataccttcttcatttaggtgttgtccatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="92468" stop="93476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92768" g_stop="93176" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E368323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92768" e_stop="93176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACC</genome_strand>
        <mrna_strand>CAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259398" ref_strand="+" ref_description="SGN-E259398 [cLEG-43-F2]">
      <seq>actttcagaaatcttaaatgcactagacatagacatattgctgcttctcatgatttcgctcgaagtatctttgggatattgaagagtgcttctggggttggtgatttttcaatacgagggaaaagtgatcttccagtggggtctgctcctattgatgttctaggatactctctcaccctcatgagagatatttgcgcttctgatcacttatcaagctctaaggaagaaagttcaaaggatgttgtggacgtacttgtttcctctgggcttattgaatttcttttgaacttgcttcgggatcttgaacctccaacgacaattaggaacgcaatgaagccggatcagatcaaggaggggacaataccttcttcatttaggtgttgtccataccaaggtttccggagagatattgttgccatccttggaaattgtgcttataggagaaggcatgtccaagatgagattagggataaaaatgggatccttttactgctacaacagtgtgttatagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="92488" stop="93599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92788" g_stop="93299" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E259398" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92788" e_stop="93299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCAGAAATCTTAAATGAACGAG-TAGAG-CATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATG</genome_strand>
        <mrna_strand>ACTTTCAGAAATCTTAAATGCACTAGACATAGACATATTGCTGCTTCTCATGATTTCGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGGTGATTTTTCAATACGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541174" ref_strand="+" ref_description="SGN-E541174 [TUS-61-N8](-)">
      <seq>gatcacttatcaagctctaaggaagaaagttcaaaggatgttgtggacgtacttgtttcttctgggcttattgaatttcttttgaacttgcttcgggatcttgaacctccaacgacaattaggaacgcaatgaagccggatcagatcaaggaggggacaataccttcttcatttaggtgttgtccataccaaggtttccggagagatattgttgccatccttggaaattgtgcttataggagaaggcatgtccaagatgagattagggataaaaatgggatccttttactgctacaacagtgtgttatagatgaagataatcctttcttaagggagtggggaatctggtgtgtgcgaaacctattggaagggaatgcagaaaaccaaggggctattactgatttggagcttcaaggaaccgtagatgttccagaacttgttagacttgggcttcgagtagaagttgatcccgtaactcgacgcacaaagcttgtgaattcctcatgatatgtcaagtgatgaaagttaaaaattgcaacttctggagttgacaaactgattgttcaggaaacttgtttcttggtctgcttaagattgattcacatgttctggaatgtccataagagagtacatacattacagacaataaaacagatggattttgataccaaggaatgaagagagtgttgaagtcatggacgctcnagagtacattacaatttacaaacctataatttcttctttttgaaaaattgaaaacttaagtggtataaataaaggccactgntaatttatttctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="92687" stop="95996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92987" g_stop="93612" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93613" i_stop="95519" i_length="1907">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95520" g_stop="95702" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="811" r_length="185" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E541174" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92987" e_stop="93612"/>
          <exon e_start="95520" e_stop="95702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATGAAGATAATCCTTTCTTAAGGGAGTGGGGAATCTGGTGTGTGCGAAACCTATTGGAAGGGAATGCAGAAAACCAAGGGGCTATTACTGATTTGGAGCTTCAAGGAACCGTAGATGTTCCAGAACTTGTTAGACTTGGGCTTCGAGTAGAAGTTGATCCCGTAACTCGACGCACAAAGCTTGTGAATTCCTCATGATATGTCAAGTGATGAAAGTTAAAAATTGCAACTTCTGGAGTTGACAAACTGATTGTTCAGGAAACTTGTTTCTTGGTCTGCTTAAGATTGATTCACATGTTCTGGAATGTCCATAAGAGGTAACACACAAACTTCATCTTACTATAGTTTTATTATAACTTGTATTTTACCTCCTAGGTTGACAGGTTTCAGTTTGTATAATTAGTGGAAAAACTTAATATTATTAGACTTGTACTGATGGAATTCCTTATGTACAAAATCTACTCATATGCCATTGAGTATTAGTAACTAATTTTCCGGAGCTTCCATTACAATGGGCTCAAGAGTGAACCTAGTTGAGATTTCGTGATTTGGTGAGAGTTTGTGGTAGAATGAGTTAGATTTGATGAAAGATATCATGGGTTGCTAAAAATTTCTGATAGAAGTTCTGTTTTTGTTAAATGTTTATTGAAGTGGCTATATTCTGCTTCTTATGGATACGTCCACCTCTGACCCTATATAATTGTAAAATAATGTTTATTACCAGTTAACTGCATTTCTTCAATGTTTCCTAATTTTTGCTTGTGGATCCTACTTTCACTTATTCATGCATATTCTTAACTGCGTTTCTTCAAGGTTTCCTAATTTTTGCTTGTGGATCCTACTTTCACTTGTTCACGCATATTCCATGCTAGAGGCTGTTTAATCCTGTCATTTCTGTTAGGAATCATTAGCAACTTTCATGTTCAGAGAAGTGCACCGACTTACTAATACCTGAGTTTTTATATTTATTTGTTCTTTCTCTAGGCTAGAGGTGGGACTCAAGAAGTACACTTCCTGCCTTTTACACCTGTCAACAAGCACACAACTATTACTTTCATAGAATTGATGGCAATTGACATAGGTTTAGCAAAGGGTGACTTGAAGAGATGAGCCATAGCTTGAAAGTCACAAGATTTCTTACTACAAGAATGGTATGACTCCTAATTGGATGAACAACTGTACATCATATTAATTATCAAAAATAGGATTCTCCTACATACAGCTGATTAGTTTAGAATGTCTTATTAGAGTGTCTACTGGCAGTGCTTGCTTGACGCAAATTAAAGGACAATTTCTCGAGATAGCTTTGCCGCAAATGTATTGGAACCTTTTTTTATATATGTAATTATAAAATTCTGTTTCACCACTGTTTTTAGTTGTGCATTAGGATTCTAAAGACTCTTTATCCACGTGACCTTAAATGTTTTCAAAAGCATCTTAGGCTCCTGGCTTCTTTTGTCCTATCTTGTTCAATTCATTCTGAACTTGACTCTAGGGTGAACTCATAAAAATTCACTTGAGCTTGATGCTCAGCTATGTACTGGAACCACATAGTTCTGACTTCTGAGAGAATAGGAGATCTCTCTTGTAATCTGGCTGTGATAAGAAATAAGATCATGCAACTTAAGAGGCCATATACTTGAACTTTTTTCTTCCTGTATCTCGAGATAAGAAGTAGAGCCATCTCTCCAGTTATGTCCTTGGTTTGAAGAGAATATGGGTGTCGGGTTGCAACTTGCAAGGCCGCAATTAGCCCTATAGAAGAAAATCATAAGCTTGAAGAGAAGAGAAAAGAACCCTTGGATGATGCAGGGATCAGAGCTTGTGGGAGAACTTAGATATCTTACTATCACTAGACCTAACATTACCTATGCTGTGGGAATCTCTCTTTTGTTGATCTCCACATTCTTTTTGATACTAGAAAGCACGAAACTCGTGATTCTACTTCTTGTCTGTTTCTGGAAGGACATATGTTCCTTTTTTTTTTCTGTGTTGCTCTCTGTTTTTTTGTTTATTTTTTGCCTCAAAGGGGATGTATGTATATCTCTTTATGGAGAATCAGTGTTGATCATGTATATAGGTGGAGAATCAGTGTTGATCATGTATATAGGTGATCTCAGAAACAAGTATGCATAAGTATTAACCCAAATACTATTAAACTTCACTTTTTATAATTTGATAGATTGTGTTAATCATTAACTAATTACCTTAATTTTGTTGGCAGAGTACATACATTACAGACAATAAAACAGATGGATTTTGATACCAAGGAATGAAGAGAGTGTTGAAGTCATGGACGCTC-AGAGTACATTACAATTTACAAACCTATAATTTCTTCTTTTTGAAAAATTGAAAACTTAAGTGGTATAAATAAAGGCCACTG-TAATTTATTTCTGAAATAGCTTTA</genome_strand>
        <mrna_strand>GATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCTTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATGAAGATAATCCTTTCTTAAGGGAGTGGGGAATCTGGTGTGTGCGAAACCTATTGGAAGGGAATGCAGAAAACCAAGGGGCTATTACTGATTTGGAGCTTCAAGGAACCGTAGATGTTCCAGAACTTGTTAGACTTGGGCTTCGAGTAGAAGTTGATCCCGTAACTCGACGCACAAAGCTTGTGAATTCCTCATGATATGTCAAGTGATGAAAGTTAAAAATTGCAACTTCTGGAGTTGACAAACTGATTGTTCAGGAAACTTGTTTCTTGGTCTGCTTAAGATTGATTCACATGTTCTGGAATGTCCATAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACATACATTACAGACAATAAAACAGATGGATTTTGATACCAAGGAATGAAGAGAGTGTTGAAGTCATGGACGCTCNAGAGTACATTACAATTTACAAACCTATAATTTCTTCTTTTTGAAAAATTGAAAACTTAAGTGGTATAAATAAAGGCCACTGNTAATTTATTTCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368322" ref_strand="+" ref_description="SGN-E368322 [TUS-26-O2](-)">
      <seq>gttgccatccttggaaattgtgcttataggagaaggcatgtccaagatgagattagggataaaaatgggatccttttactgctacaacagtgtgttatagatgaaaataatcctttcttaagggagtggggaatttggtgtgtgcgaaacctattggaagggaatgcagaaaaccaaggggctattactgatttggagcttcaaggaaccgtagatgttccagaacttgttagacttgggcttcgagtagaagttgatcccgtaactcgacgcacaaagcttgtgaattcctcatgatatgtcaagtgatgaaagttaaaaattgcaacttctggagttgacaaactgattgttcaggaaacttgtttcttggtctgcttaagattgattcacatgttctggaatgtccataagagagtacatacattacagacaataaaacagatggattttgataccaaggaatgaaaagagtgttgaagtcatggacgctcagagtacattacaatttacaaacctataatttcttctttttgaaaaattgaaaacttaagtggtataaataaaggccactgtaatttatttctgaaatagctttaatagaaaaagctgttgtgtatttgtcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="92897" stop="96030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93197" g_stop="93612" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93613" i_stop="95519" i_length="1907">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95520" g_stop="95732" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="630" r_length="214" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="649"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E368322" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93197" e_stop="93612"/>
          <exon e_start="95520" e_stop="95732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATGAAGATAATCCTTTCTTAAGGGAGTGGGGAATCTGGTGTGTGCGAAACCTATTGGAAGGGAATGCAGAAAACCAAGGGGCTATTACTGATTTGGAGCTTCAAGGAACCGTAGATGTTCCAGAACTTGTTAGACTTGGGCTTCGAGTAGAAGTTGATCCCGTAACTCGACGCACAAAGCTTGTGAATTCCTCATGATATGTCAAGTGATGAAAGTTAAAAATTGCAACTTCTGGAGTTGACAAACTGATTGTTCAGGAAACTTGTTTCTTGGTCTGCTTAAGATTGATTCACATGTTCTGGAATGTCCATAAGAGGTAACACACAAACTTCATCTTACTATAGTTTTATTATAACTTGTATTTTACCTCCTAGGTTGACAGGTTTCAGTTTGTATAATTAGTGGAAAAACTTAATATTATTAGACTTGTACTGATGGAATTCCTTATGTACAAAATCTACTCATATGCCATTGAGTATTAGTAACTAATTTTCCGGAGCTTCCATTACAATGGGCTCAAGAGTGAACCTAGTTGAGATTTCGTGATTTGGTGAGAGTTTGTGGTAGAATGAGTTAGATTTGATGAAAGATATCATGGGTTGCTAAAAATTTCTGATAGAAGTTCTGTTTTTGTTAAATGTTTATTGAAGTGGCTATATTCTGCTTCTTATGGATACGTCCACCTCTGACCCTATATAATTGTAAAATAATGTTTATTACCAGTTAACTGCATTTCTTCAATGTTTCCTAATTTTTGCTTGTGGATCCTACTTTCACTTATTCATGCATATTCTTAACTGCGTTTCTTCAAGGTTTCCTAATTTTTGCTTGTGGATCCTACTTTCACTTGTTCACGCATATTCCATGCTAGAGGCTGTTTAATCCTGTCATTTCTGTTAGGAATCATTAGCAACTTTCATGTTCAGAGAAGTGCACCGACTTACTAATACCTGAGTTTTTATATTTATTTGTTCTTTCTCTAGGCTAGAGGTGGGACTCAAGAAGTACACTTCCTGCCTTTTACACCTGTCAACAAGCACACAACTATTACTTTCATAGAATTGATGGCAATTGACATAGGTTTAGCAAAGGGTGACTTGAAGAGATGAGCCATAGCTTGAAAGTCACAAGATTTCTTACTACAAGAATGGTATGACTCCTAATTGGATGAACAACTGTACATCATATTAATTATCAAAAATAGGATTCTCCTACATACAGCTGATTAGTTTAGAATGTCTTATTAGAGTGTCTACTGGCAGTGCTTGCTTGACGCAAATTAAAGGACAATTTCTCGAGATAGCTTTGCCGCAAATGTATTGGAACCTTTTTTTATATATGTAATTATAAAATTCTGTTTCACCACTGTTTTTAGTTGTGCATTAGGATTCTAAAGACTCTTTATCCACGTGACCTTAAATGTTTTCAAAAGCATCTTAGGCTCCTGGCTTCTTTTGTCCTATCTTGTTCAATTCATTCTGAACTTGACTCTAGGGTGAACTCATAAAAATTCACTTGAGCTTGATGCTCAGCTATGTACTGGAACCACATAGTTCTGACTTCTGAGAGAATAGGAGATCTCTCTTGTAATCTGGCTGTGATAAGAAATAAGATCATGCAACTTAAGAGGCCATATACTTGAACTTTTTTCTTCCTGTATCTCGAGATAAGAAGTAGAGCCATCTCTCCAGTTATGTCCTTGGTTTGAAGAGAATATGGGTGTCGGGTTGCAACTTGCAAGGCCGCAATTAGCCCTATAGAAGAAAATCATAAGCTTGAAGAGAAGAGAAAAGAACCCTTGGATGATGCAGGGATCAGAGCTTGTGGGAGAACTTAGATATCTTACTATCACTAGACCTAACATTACCTATGCTGTGGGAATCTCTCTTTTGTTGATCTCCACATTCTTTTTGATACTAGAAAGCACGAAACTCGTGATTCTACTTCTTGTCTGTTTCTGGAAGGACATATGTTCCTTTTTTTTTTCTGTGTTGCTCTCTGTTTTTTTGTTTATTTTTTGCCTCAAAGGGGATGTATGTATATCTCTTTATGGAGAATCAGTGTTGATCATGTATATAGGTGGAGAATCAGTGTTGATCATGTATATAGGTGATCTCAGAAACAAGTATGCATAAGTATTAACCCAAATACTATTAAACTTCACTTTTTATAATTTGATAGATTGTGTTAATCATTAACTAATTACCTTAATTTTGTTGGCAGAGTACATACATTACAGACAATAAAACAGATGGATTTTGATACCAAGGAATGAAGAGAGTGTTGAAGTCATGGACGCTCAGAGTACATTACAATTTACAAACCTATAATTTCTTCTTTTTGAAAAATTGAAAACTTAAGTGGTATAAATAAAGGCCACTGTAATTTATTTCTGAAATAGCTTTAATAG-AAAAGCTGTTGTGTATTTGTCTTAGG</genome_strand>
        <mrna_strand>GTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATGAAAATAATCCTTTCTTAAGGGAGTGGGGAATTTGGTGTGTGCGAAACCTATTGGAAGGGAATGCAGAAAACCAAGGGGCTATTACTGATTTGGAGCTTCAAGGAACCGTAGATGTTCCAGAACTTGTTAGACTTGGGCTTCGAGTAGAAGTTGATCCCGTAACTCGACGCACAAAGCTTGTGAATTCCTCATGATATGTCAAGTGATGAAAGTTAAAAATTGCAACTTCTGGAGTTGACAAACTGATTGTTCAGGAAACTTGTTTCTTGGTCTGCTTAAGATTGATTCACATGTTCTGGAATGTCCATAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACATACATTACAGACAATAAAACAGATGGATTTTGATACCAAGGAATGAAAAGAGTGTTGAAGTCATGGACGCTCAGAGTACATTACAATTTACAAACCTATAATTTCTTCTTTTTGAAAAATTGAAAACTTAAGTGGTATAAATAAAGGCCACTGTAATTTATTTCTGAAATAGCTTTAATAGAAAAAGCTGTTGTGTATTTGTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746520" ref_strand="+" ref_description="SGN-E746520 [GI|47104230]">
      <seq>ctgaacctgaaacagaagatgatacaagaaaacatcaagcttctctttaatggcaaatactaaaaagttcccttctttcttcttcttctttgtcttcttctgttgctgcttcttctccacttcaagttcaaattttgcaccagagataaaattgcagcaagacaaagatgagccatatgtgggagtgaacataggtacagatgtttccaatttgctttcacctgcagacttggttgcttttttgcaattacagaagataactcatataaggctttatgatgctgaccctgatatactcaaagcactagctaagaccaaaataagagtgattattagtgtgcctaacaaccaaattcttgctattgggtcctctaatactactgcagctgcctggattgggcgcaatgtggcagcttactaccctgaaactcttatcactgcaatagcagttggggatgaaatcttgaccactgtgccaagttcagctcctttgcttatgccagcaattgagtcactttatagtgctttagtggctgcaaatttgcataaccaaatcaagatttcaaccccaaatgctgcttccattattcttgacccttttccaccttcccaagcttttttcaatcagtccatgagctctgtcctttctaagttattgcagttttgttcaaggacagagtcacctctgatgatgaatttgtacccttattatgtgtttatgcagaataaaggggttgttcctatagacaactctcttttcaagcccttgacaccttctaaagagatggtggatcctaatactttgcttcattacaccaatgtgcttgatgcaatgatagattcagtctatttttccatgaaaaatctcaatattacagatgtgctagttcttgttaccgagtcaggatggccttcaaagggggattctaaagagccttatgctacaattgacaatgctgatacttataactcgaatttaattaagcatataattgatcgcagtggtacaccattgcatccggagattacttctagtgtatacatatatgagttattcaatgaggatttgaggtcacccccattgtccgaggcgaattgggggctattccatgggaattcaacgcctgtttacctgcttcatgtgtctggaagtggtacattcttggctaatgacaccactaaccaaacgtattgcatagcaatggatggggttgataagaggacaatgcaggcagctttagattgggcttgtggaccggggagggcaaattgctctgaaattcagccaggggagagttgttatcagcctaatgatgtgaagaaccatgcttcatatgcatttgatagctattatcagaaagaagggggatctcctagttcttgtgacttcaagggagtggccatgatcaccacaactgatccaagtcacgggagttgtatatttccaggaagtaagaaagtaagcaataaaacaagcgaggtagtgaacgcgacacaaccaagtggagcaaacacaataaggtttcttggagcacagacaagtaaatttgacaagaatgtgcatgttttatttggtgttgccttttgcttgttttattattcattgattcaagtacaattaagttaattagctgaaatctttttatttgtttaataaaaaagtagtactagttcattgtggagagggcagtgatgttttgcagaggagtgcttattgtgtggatgaatatttttttgggaggatcacatgtaaggggattctttgatggacctttttgtaaaaagaaagttgtatctaatgagattcttggaagttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="96357" stop="100015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96657" g_stop="96799" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96800" i_stop="96906" i_length="107">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96907" g_stop="98187" g_length="1281"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="1424" r_length="1281" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98188" i_stop="99162" i_length="975">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99163" g_stop="99190" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1425" r_stop="1452" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99191" i_stop="99351" i_length="161">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.671" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99352" g_stop="99712" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1453" r_stop="1813" r_length="361" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1817" polyA_stop="1831"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E746520" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>1813</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96657" e_stop="96799"/>
          <exon e_start="96907" e_stop="98187"/>
          <exon e_start="99163" e_stop="99190"/>
          <exon e_start="99352" e_stop="99712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTCCTTTCTTCTTCTTCTTTGTCCTCTTCTCTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAGGTAACATTTATGAACCAATCTTGAAAAAAAAAACATGTCTTTTTTTTTGTGGGGTTTCTTGATTTTGTATTTTTTTTTTCTGAATATGGTTCTTGAATTTGTTGCAGAGATAAAAGTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCTGGATTGGGCGCAATGTGGCAGCTTATTACCCTGAAACTCTTATCACTGCAATAGCAGTTGGGGATGAAATCTTGACCACTGTGCCAAGTTCAGCTCCTTTGCTTATGCCAGCAATTGAGTCACTTTATAGTGCTTTAGTGGCTGCAAATTTGCATAACCAAATCAAGATTTCAACTCCAAATGCTGCTTCCATTATTCTTGACCCTTTTCCACCTTCCCAAGCTTTTTTCAATCAGTCCATGAGCTCTGTCCTTTCTAAGTTATTGCAGTTCTGTTCAAGGACACAGTCACCTCTGATGATGAATTTGTACCCTTATTATGTGTTTATGCAGAATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATTGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAAGTAAGTCTATCATAATCTTAGTTTCTCTGTGTATTTAGTTTTCTTTCTATTTCAAGAAAATATTAGTTCCAATGCATTAAGTTGAAGTTTGAAGTTTTAGTTATGGATTTATGAGCTACACTTAAGTTTGTTACAATGAGAGAGCTGAAATGGATGATACAAAAGTTAATTCTTTATTAGGTGATTTAAGCATTTTGTCCCAAACTATTTCATGTTCAACATTTTAATGTAAAATATCTTTGAACCATCCCATTTGAAAAACACAACAACAACAAAACAATCCAATTCAAAAATAATTTATGAACCATAAAGAATGTTTAATGGCCTTCTTAAGTTGATTCAATGATACACTGACAACTGTAATCACAAATGTCATGTTCTGCAAAATAATTCATGACCTAGTGGTTACCAGACCCACAATGGAACTTTAGTGCCCACTTGGATATGGAAGATTTACACTTGGATGGTGGAAATAAAATTTGAAATAGGATTTCAGTTTTTATATAGTTTATGCTCCATTTTAGGGTCCATACAAATAGAGATGTACTTGATATTCAATTTTATATAAAATAACATACTTGCACCCATGGGTGAAAACTGACACCATAAGAAACCAGAGTTCGAATCTCCGCGAAGACAAACGACTTCACATGATTCGTTTCAACTTGCTTAGGCCTTGGTATATGTGTTGTGTGGGAGATGACGATGTACATATAAGTTCGACCAGACAGCACCGTTATTAGATAAAAGTACTAACATATTATCAATAGAATGGAAACACAAGAATGCATATGTTGTTTTGTGGAGTTTGACTTAACCAGAATAGAGTACTTATATCATGTTTATATATATATATATATATAGCTAGCAAGTATAGGGCTCCACTTGTTTCCTATTTTTAAAGTGAAGTCTATTCTAAATTATTTAGCTGAAGCTCTGAACTTATGTCTTTCCATTTGTGGGGAATATATGCAGGTCACGGGAGTTGTATATTTCCAGGAAGGTGAGCATAAATTTTTGTCCTTTTTTCCCCATACTATTTGTCCTTGTCCTTCTCATTTCCCCATGCTGATATTAGCTGTAAAATCACTGTTTCCCTATTTCTTTTGATGATCATCTTGGGTTAGAACGTAGACTTACAATCGGTAAACTACTAAAATGCAGCAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAATTAGTTTTTTAGTTGAAATCTTTTTATTTGTTCAATAAAGAAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGC------T-T--ATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGGAA</genome_strand>
        <mrna_strand>CTGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTTCTTTCTTCTTCTTCTTTGTCTTCTTCTGTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAG...........................................................................................................AGATAAAATTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCTGGATTGGGCGCAATGTGGCAGCTTACTACCCTGAAACTCTTATCACTGCAATAGCAGTTGGGGATGAAATCTTGACCACTGTGCCAAGTTCAGCTCCTTTGCTTATGCCAGCAATTGAGTCACTTTATAGTGCTTTAGTGGCTGCAAATTTGCATAACCAAATCAAGATTTCAACCCCAAATGCTGCTTCCATTATTCTTGACCCTTTTCCACCTTCCCAAGCTTTTTTCAATCAGTCCATGAGCTCTGTCCTTTCTAAGTTATTGCAGTTTTGTTCAAGGACAGAGTCACCTCTGATGATGAATTTGTACCCTTATTATGTGTTTATGCAGAATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATAGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCGAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGGACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGGGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGGGAGTTGTATATTTCCAGGAAG.................................................................................................................................................................TAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAACACAATAAGGTTTCTTGGAGCACAGACAAGTAAATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTTTGCTTGTTTTATTATTCATTGATTCAAGTACAATTAAGTT-A--A-----TTAGCTGAAATCTTTTTATTTGTTTAATAAA-AAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGCTTATTGTGTGGATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359042" ref_strand="+" ref_description="SGN-E359042 [cLHT-11-K23]">
      <seq>tgaacctgaaacagaagatgatacaagaaaacatcaagcttctctttaatggcaaatactaaaaagttcccttctttcttcttcttctttgtcttcttctgttgctgcttcttctccacttcaagttcaaattttgcaccagagataaaattgcagcaagacaaagatgagccatatgtgggagtgaacataggtacagatgtttccaatttgctttcacctgcagacttggttgcttttttgcaattacagaagataactcatataaggctttatgatgctgaccctgatatactcaaagcactagctaagaccaaaataagagtgattattagtgtgcctaacaaccaaattcttgctattgggtcctctaatactactgcagctgcctggattgggcgcaatgtggcagcttactaccctgaaactcttatcactgcaatagcagttggggatgaaatcttgaccactgtgccaagttcagctcctttgcttatgccagcaattgagtcactttatagtgctttagtggctgcaaatttgcataaccaaatcaagatttcaaccccaaatgctgcttccattattcttgacccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="96358" stop="97663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96658" g_stop="96799" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96800" i_stop="96906" i_length="107">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96907" g_stop="97363" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="599" r_length="457" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E359042" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96658" e_stop="96799"/>
          <exon e_start="96907" e_stop="97363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTCCTTTCTTCTTCTTCTTTGTCCTCTTCTCTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAGGTAACATTTATGAACCAATCTTGAAAAAAAAAACATGTCTTTTTTTTTGTGGGGTTTCTTGATTTTGTATTTTTTTTTTCTGAATATGGTTCTTGAATTTGTTGCAGAGATAAAAGTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCTGGATTGGGCGCAATGTGGCAGCTTATTACCCTGAAACTCTTATCACTGCAATAGCAGTTGGGGATGAAATCTTGACCACTGTGCCAAGTTCAGCTCCTTTGCTTATGCCAGCAATTGAGTCACTTTATAGTGCTTTAGTGGCTGCAAATTTGCATAACCAAATCAAGATTTCAACTCCAAATGCTGCTTCCATTATTCTTGACCCTTT</genome_strand>
        <mrna_strand>TGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTTCTTTCTTCTTCTTCTTTGTCTTCTTCTGTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAG...........................................................................................................AGATAAAATTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCTGGATTGGGCGCAATGTGGCAGCTTACTACCCTGAAACTCTTATCACTGCAATAGCAGTTGGGGATGAAATCTTGACCACTGTGCCAAGTTCAGCTCCTTTGCTTATGCCAGCAATTGAGTCACTTTATAGTGCTTTAGTGGCTGCAAATTTGCATAACCAAATCAAGATTTCAACCCCAAATGCTGCTTCCATTATTCTTGACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725986" ref_strand="+" ref_description="SGN-E725986 [LA08DG07]">
      <seq>tgaacctgaaacagaagatgatacaagaaaacatcaagcttctctttaatggcaaatactaaaaagttccctcctttcttcttcttctttgtcctcttctcttgctgcttcttctccacttcaagttcaaattttgcaccagagataaaagtgcagcaagacaaagatgagccatatgtgggagtgaacataggtacagatgtttccaatttgctttcacctgcagacttggttgcttttttgcaattacagaagataactcatataaggctttatgatgctgaccctgatatactcaaagcactagctaagaccaaaataagagtgattattagtgtgcctaacaaccaaattcttgctattgggtcctctaatactactgcagctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="96358" stop="97455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96658" g_stop="96799" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96800" i_stop="96906" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96907" g_stop="97155" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="391" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E725986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96658" e_stop="96799"/>
          <exon e_start="96907" e_stop="97155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTCCTTTCTTCTTCTTCTTTGTCCTCTTCTCTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAGGTAACATTTATGAACCAATCTTGAAAAAAAAAACATGTCTTTTTTTTTGTGGGGTTTCTTGATTTTGTATTTTTTTTTTCTGAATATGGTTCTTGAATTTGTTGCAGAGATAAAAGTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCT</genome_strand>
        <mrna_strand>TGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTCCTTTCTTCTTCTTCTTTGTCCTCTTCTCTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAG...........................................................................................................AGATAAAAGTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739417" ref_strand="+" ref_description="SGN-E739417 [LC17BE05]">
      <seq>cttctgcataaacacataataaaggggttgttcctatagacaactctcttttcaagcccttgacaccttctaaagagatggtggatcctaatactttgcttcattacaccaatgtgcttgatgcaatgattgattcagtctatttttccatgaaaaatctcaatattacagatgtgctagttcttgttaccgagtcaggatggccttcaaagggggattctaaagagccttatgctacaattgacaatgctgatacttataactcgaatttaattaagcatataattgatcgcagtggtacaccattgcatccggagattacttctagtgtatacatatatgagttattcaatgaggatttgaggtcacccccattgtccgaggcaaattgggggctattccatgggaattcaacgcctgtttacctgcttcatgtgtctggaagtggtacattcttggctaatgacaccactaaccaaacgtattgcatagcaatggatggggttgataagagaacaatgcaggcagctttagattgggcttgtggaccggggagggcaaattgctctgaaattcagccaggagagagttgttatcagcctaatgatgtgaagaaccatgcttcatatgcatttgatagctattatcagaaagaagggggatctcctagttcttgtgacttcaagggagtggccatgatcaccacaactgatccaagtcacgggagttgtatatttccaggaagcaagaaagtaagcaataaaacaagcgaggtagtgaacgcgacacaaccaagtggagcaaatacaataaggtttcttggagcacagacaagtatatttgacaagaatgtgcatgttttatttgggtgttgcttgtgcttngtttattattcattgattcaggtacaattaagttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="97172" stop="99827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97488" g_stop="98187" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="717" r_length="700" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98188" i_stop="99162" i_length="975">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99163" g_stop="99190" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="745" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99191" i_stop="99351" i_length="161">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99352" g_stop="99527" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="921" r_length="176" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E739417" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97488" e_stop="98187"/>
          <exon e_start="99163" e_stop="99190"/>
          <exon e_start="99352" e_stop="99527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATTGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAAGTAAGTCTATCATAATCTTAGTTTCTCTGTGTATTTAGTTTTCTTTCTATTTCAAGAAAATATTAGTTCCAATGCATTAAGTTGAAGTTTGAAGTTTTAGTTATGGATTTATGAGCTACACTTAAGTTTGTTACAATGAGAGAGCTGAAATGGATGATACAAAAGTTAATTCTTTATTAGGTGATTTAAGCATTTTGTCCCAAACTATTTCATGTTCAACATTTTAATGTAAAATATCTTTGAACCATCCCATTTGAAAAACACAACAACAACAAAACAATCCAATTCAAAAATAATTTATGAACCATAAAGAATGTTTAATGGCCTTCTTAAGTTGATTCAATGATACACTGACAACTGTAATCACAAATGTCATGTTCTGCAAAATAATTCATGACCTAGTGGTTACCAGACCCACAATGGAACTTTAGTGCCCACTTGGATATGGAAGATTTACACTTGGATGGTGGAAATAAAATTTGAAATAGGATTTCAGTTTTTATATAGTTTATGCTCCATTTTAGGGTCCATACAAATAGAGATGTACTTGATATTCAATTTTATATAAAATAACATACTTGCACCCATGGGTGAAAACTGACACCATAAGAAACCAGAGTTCGAATCTCCGCGAAGACAAACGACTTCACATGATTCGTTTCAACTTGCTTAGGCCTTGGTATATGTGTTGTGTGGGAGATGACGATGTACATATAAGTTCGACCAGACAGCACCGTTATTAGATAAAAGTACTAACATATTATCAATAGAATGGAAACACAAGAATGCATATGTTGTTTTGTGGAGTTTGACTTAACCAGAATAGAGTACTTATATCATGTTTATATATATATATATATATAGCTAGCAAGTATAGGGCTCCACTTGTTTCCTATTTTTAAAGTGAAGTCTATTCTAAATTATTTAGCTGAAGCTCTGAACTTATGTCTTTCCATTTGTGGGGAATATATGCAGGTCACGGGAGTTGTATATTTCCAGGAAGGTGAGCATAAATTTTTGTCCTTTTTTCCCCATACTATTTGTCCTTGTCCTTCTCATTTCCCCATGCTGATATTAGCTGTAAAATCACTGTTTCCCTATTTCTTTTGATGATCATCTTGGGTTAGAACGTAGACTTACAATCGGTAAACTACTAAAATGCAGCAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTT-GGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAAT</genome_strand>
        <mrna_strand>AATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATTGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGGGAGTTGTATATTTCCAGGAAG.................................................................................................................................................................CAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGGTGTTG-CTTGTGCTTNGTTTATTATTCATTGATTCAGGTACAATTAAGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740418" ref_strand="+" ref_description="SGN-E740418 [LC21BC11]">
      <seq>cttctgcataaacacataataaaggggttgttcctatagacaactctcttttcaagcccttgacaccttctaaagagatggtggatcctaatactttgcttcattacaccaatgtgcttgatgcaatgattgattcagtctatttttccatgaaaaatctcaatattacagatgtgctagttcttgttaccgagtcaggatggccttcaaagggggattctaaagagccttatgctacaattgacaatgctgatacttataactcgaatttaattaagcatataattgatcgcagtggtacaccattgcatccggagattacttctagtgtatacatatatgagttattcaatgaggatttgaggtcacccccattgtccgaggcaaattgggggctattccatgggaattcaacgcctgtttacctgcttcatgtgtctggaagtggtacattcttggctaatgacaccactaaccaaacgtattgcatagcaatggatggggttgataagagaacaatgcaggcagctttagattgggcttgtggaccggggagggcaaattgctctgaaattcagccaggagagagttgttatcagcctaatgatgtgaagaaccatgcttcatatgcatttgatagctattatcagaaagaagggggatctcctagttcttgtgacttcaagggagtggccatgatcaccacaactgatccaagtcacgggagttgtatatttccaggaagcaagaaagtaagcaataaaacaagcgaggtagtgaaacgcgacacaccaagtggagcaaatacaataaagtttcttggagcacagacaagtatatttgacaagaatgtgcatgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="97172" stop="99769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97488" g_stop="98187" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="717" r_length="700" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98188" i_stop="99162" i_length="975">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99163" g_stop="99190" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="745" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99191" i_stop="99351" i_length="161">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.671" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99352" g_stop="99469" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="863" r_length="118" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E740418" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97488" e_stop="98187"/>
          <exon e_start="99163" e_stop="99190"/>
          <exon e_start="99352" e_stop="99469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATTGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAAGTAAGTCTATCATAATCTTAGTTTCTCTGTGTATTTAGTTTTCTTTCTATTTCAAGAAAATATTAGTTCCAATGCATTAAGTTGAAGTTTGAAGTTTTAGTTATGGATTTATGAGCTACACTTAAGTTTGTTACAATGAGAGAGCTGAAATGGATGATACAAAAGTTAATTCTTTATTAGGTGATTTAAGCATTTTGTCCCAAACTATTTCATGTTCAACATTTTAATGTAAAATATCTTTGAACCATCCCATTTGAAAAACACAACAACAACAAAACAATCCAATTCAAAAATAATTTATGAACCATAAAGAATGTTTAATGGCCTTCTTAAGTTGATTCAATGATACACTGACAACTGTAATCACAAATGTCATGTTCTGCAAAATAATTCATGACCTAGTGGTTACCAGACCCACAATGGAACTTTAGTGCCCACTTGGATATGGAAGATTTACACTTGGATGGTGGAAATAAAATTTGAAATAGGATTTCAGTTTTTATATAGTTTATGCTCCATTTTAGGGTCCATACAAATAGAGATGTACTTGATATTCAATTTTATATAAAATAACATACTTGCACCCATGGGTGAAAACTGACACCATAAGAAACCAGAGTTCGAATCTCCGCGAAGACAAACGACTTCACATGATTCGTTTCAACTTGCTTAGGCCTTGGTATATGTGTTGTGTGGGAGATGACGATGTACATATAAGTTCGACCAGACAGCACCGTTATTAGATAAAAGTACTAACATATTATCAATAGAATGGAAACACAAGAATGCATATGTTGTTTTGTGGAGTTTGACTTAACCAGAATAGAGTACTTATATCATGTTTATATATATATATATATATAGCTAGCAAGTATAGGGCTCCACTTGTTTCCTATTTTTAAAGTGAAGTCTATTCTAAATTATTTAGCTGAAGCTCTGAACTTATGTCTTTCCATTTGTGGGGAATATATGCAGGTCACGGGAGTTGTATATTTCCAGGAAGGTGAGCATAAATTTTTGTCCTTTTTTCCCCATACTATTTGTCCTTGTCCTTCTCATTTCCCCATGCTGATATTAGCTGTAAAATCACTGTTTCCCTATTTCTTTTGATGATCATCTTGGGTTAGAACGTAGACTTACAATCGGTAAACTACTAAAATGCAGCAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTG-AACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTA</genome_strand>
        <mrna_strand>AATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATTGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGGGAGTTGTATATTTCCAGGAAG.................................................................................................................................................................CAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAAACGCGACAC-ACCAAGTGGAGCAAATACAATAAAGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356509" ref_strand="+" ref_description="SGN-E356509 [cTOS-21-E11]">
      <seq>ttgctctgaaattcagccaggagagagttgttatcagcctaatgatgtgaagaaccatgcttcatatgcatttgatagctattatcagaaagaagggggatctcctagttcttgtgacttcaagggagtggccatgatcaccacaactgatccaagtcacgggagttgtatatttccaggaagcaagaaagtaagcaataaaacaagcgaggtagtgaacgcgacacaaccaagtggagcaaatacaataaggtttcttggagcacagacaagtatatttgacaagaatgtgcatgttttatttggtgttgccttgtgcttgttttattattcattgattcaggtacaattaagttaattagttttttagttgaaatctttttatttgttcaataaagaaagtagtactagttcattgtggagagggcagtgatgttttgcagaggagtgcttatgaatatttttttgggaggatcacatgtaaggggattctttgatggacctttttgtaaaaagaaagttgtatctaatgagattcttggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="97733" stop="100012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98033" g_stop="98187" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98188" i_stop="99162" i_length="975">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99163" g_stop="99190" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="183" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99191" i_stop="99351" i_length="161">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99352" g_stop="99712" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="544" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E356509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98033" e_stop="98187"/>
          <exon e_start="99163" e_stop="99190"/>
          <exon e_start="99352" e_stop="99712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAAGTAAGTCTATCATAATCTTAGTTTCTCTGTGTATTTAGTTTTCTTTCTATTTCAAGAAAATATTAGTTCCAATGCATTAAGTTGAAGTTTGAAGTTTTAGTTATGGATTTATGAGCTACACTTAAGTTTGTTACAATGAGAGAGCTGAAATGGATGATACAAAAGTTAATTCTTTATTAGGTGATTTAAGCATTTTGTCCCAAACTATTTCATGTTCAACATTTTAATGTAAAATATCTTTGAACCATCCCATTTGAAAAACACAACAACAACAAAACAATCCAATTCAAAAATAATTTATGAACCATAAAGAATGTTTAATGGCCTTCTTAAGTTGATTCAATGATACACTGACAACTGTAATCACAAATGTCATGTTCTGCAAAATAATTCATGACCTAGTGGTTACCAGACCCACAATGGAACTTTAGTGCCCACTTGGATATGGAAGATTTACACTTGGATGGTGGAAATAAAATTTGAAATAGGATTTCAGTTTTTATATAGTTTATGCTCCATTTTAGGGTCCATACAAATAGAGATGTACTTGATATTCAATTTTATATAAAATAACATACTTGCACCCATGGGTGAAAACTGACACCATAAGAAACCAGAGTTCGAATCTCCGCGAAGACAAACGACTTCACATGATTCGTTTCAACTTGCTTAGGCCTTGGTATATGTGTTGTGTGGGAGATGACGATGTACATATAAGTTCGACCAGACAGCACCGTTATTAGATAAAAGTACTAACATATTATCAATAGAATGGAAACACAAGAATGCATATGTTGTTTTGTGGAGTTTGACTTAACCAGAATAGAGTACTTATATCATGTTTATATATATATATATATATAGCTAGCAAGTATAGGGCTCCACTTGTTTCCTATTTTTAAAGTGAAGTCTATTCTAAATTATTTAGCTGAAGCTCTGAACTTATGTCTTTCCATTTGTGGGGAATATATGCAGGTCACGGGAGTTGTATATTTCCAGGAAGGTGAGCATAAATTTTTGTCCTTTTTTCCCCATACTATTTGTCCTTGTCCTTCTCATTTCCCCATGCTGATATTAGCTGTAAAATCACTGTTTCCCTATTTCTTTTGATGATCATCTTGGGTTAGAACGTAGACTTACAATCGGTAAACTACTAAAATGCAGCAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAATTAGTTTTTTAGTTGAAATCTTTTTATTTGTTCAATAAAGAAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGCTTATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGGAA</genome_strand>
        <mrna_strand>TTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGGGAGTTGTATATTTCCAGGAAG.................................................................................................................................................................CAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAATTAGTTTTTTAGTTGAAATCTTTTTATTTGTTCAATAAAGAAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGCTTATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689433" ref_strand="+" ref_description="SGN-E689433 [t3_tus_84_M05]">
      <seq>tggaatttttggtttctgagacttaaaaatttattgacaactgtttcaggaatggtatacaacaaaggaggaactcatggcaagatggagtttatggcacaacttgtccaatcctacctggaaagaacttcacttataccctccaagcaaaagaccagataggtagttatttctacttcccatcacttgcaatgcacaaggcagcaggaggatatggtgccatcagagtctatagccgtcctcgaattccagtaccttttgctccacctgctcatgatttcactgtactagctggagacttgtacaagagaagtcacaggcaactgaagtacattttagatagtggtcatgatcttccgttacctgatggtcttattatcaatggtcgaggatggaacggatacacatttacagttgatcaaggtaagacatataggttcaggatatctaatgtggggattgcgacatcaattaatttcagaattcaagggcacacgatgaaactggttgaagttgagggatcacatacacttcagacaacctacacttcacttgacatccatctaggacaatcttattcagttttagtcactgccaatcagcctccaaaggactactacatcgtggtctcttcacgattcaccacacgagtgctaaccactactgccgttcttcactacagcaactcatggacaaaagtctctggacctccccctggagggcctactactcaaattaattggtccctttaccaagccagatctattcgttggaatctcactgcaagtggaccaaggcccaatcctcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="106520" stop="108234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106818" g_stop="107137" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107138" i_stop="107231" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107232" g_stop="107334" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="423" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107335" i_stop="107420" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107421" g_stop="107766" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="769" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107767" i_stop="107892" i_length="126">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107893" g_stop="107934" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="811" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E689433" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106818" e_stop="107137"/>
          <exon e_start="107232" e_stop="107334"/>
          <exon e_start="107421" e_stop="107766"/>
          <exon e_start="107893" e_stop="107934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTTTTGGTTTCTGAGACTTAAAAATTTATTGACAACTGTTTCAGGAATGGTATACAACAAAGGAGGAACTCATGGCAAGATGGAGTTTATGGCACAACTTGTCCAATCCTACCTGGAAAGAACTTCACTTATACCCTCCAAGCAAAAGACCAGATAGGTAGTTATTTCTACTTCCCATCACTTGCAATGCACAAGGCAGCAGGAGGATATGGTGCCATCAGAGTCTATAGCCGTCCTCGAATTCCAGTACCTTTTGCTCCACCTGCTCATGATTTCACTGTACTAGCTGGAGACTTGTACAAGAGAAGTCACAGGGTGAGTCCATCTGTTTGGCTTAGTTATCTTTTCAAATGTTTTAACTTGAATGATTTTGGTGCTGAATTTTTATGTGGGGATTTGGTTCTTGCAGCAACTGAAGTACATTTTAGATAGTGGTCATGATCTTCCGTTACCTGATGGTCTTATTATCAATGGTCGAGGATGGAACGGATACACATTTACAGTTGATCAAGGTAAACTGCTAACTTGTCTGCTTAAAAGAATCTTGTTTTTCTGTAATGTGCCTTGTCTTCTTAACATTTCTAAACTCAATGTGTAGGTAAGACATATAGGTTCAGGATATCTAATGTGGGGATTGCGACATCAATTAATTTCAGAATTCAAGGGCACACGATGAAACTGGTTGAAGTTGAGGGATCACATACACTTCAGACAACCTACACTTCACTTGACATCCATCTAGGACAATCTTATTCAGTTTTAGTCACTGCCAATCAGCCTCCAAAGGACTACTACATCGTGGTCTCTTCACGATTCACCACACGAGTGCTAACCACTACTGCCGTTCTTCACTACAGCAACTCATGGACAAAAGTCTCTGGACCTCCCCCTGGAGGGCCTACTACTCAAATTAATTGGTCCCTTTACCAGGCCAGATCTATTCGGTAATACATTGTCTTTTGTCTAATTCTCTTACCTTATCAAACAAAAGAAAATGATCCATGATTGATTAGGTAGTATCACTTCCATTCTGTAACTGAAAAGTCTTCATTTGTTGATTGTCAAATCAGTTGGAATCTCACTGCAAGTGGACCAAGGCCTAATCCTCAAGG</genome_strand>
        <mrna_strand>TGGAATTTTTGGTTTCTGAGACTTAAAAATTTATTGACAACTGTTTCAGGAATGGTATACAACAAAGGAGGAACTCATGGCAAGATGGAGTTTATGGCACAACTTGTCCAATCCTACCTGGAAAGAACTTCACTTATACCCTCCAAGCAAAAGACCAGATAGGTAGTTATTTCTACTTCCCATCACTTGCAATGCACAAGGCAGCAGGAGGATATGGTGCCATCAGAGTCTATAGCCGTCCTCGAATTCCAGTACCTTTTGCTCCACCTGCTCATGATTTCACTGTACTAGCTGGAGACTTGTACAAGAGAAGTCACAGG..............................................................................................CAACTGAAGTACATTTTAGATAGTGGTCATGATCTTCCGTTACCTGATGGTCTTATTATCAATGGTCGAGGATGGAACGGATACACATTTACAGTTGATCAAG......................................................................................GTAAGACATATAGGTTCAGGATATCTAATGTGGGGATTGCGACATCAATTAATTTCAGAATTCAAGGGCACACGATGAAACTGGTTGAAGTTGAGGGATCACATACACTTCAGACAACCTACACTTCACTTGACATCCATCTAGGACAATCTTATTCAGTTTTAGTCACTGCCAATCAGCCTCCAAAGGACTACTACATCGTGGTCTCTTCACGATTCACCACACGAGTGCTAACCACTACTGCCGTTCTTCACTACAGCAACTCATGGACAAAAGTCTCTGGACCTCCCCCTGGAGGGCCTACTACTCAAATTAATTGGTCCCTTTACCAAGCCAGATCTATTCG..............................................................................................................................TTGGAATCTCACTGCAAGTGGACCAAGGCCCAATCCTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334280" ref_strand="+" ref_description="SGN-E334280 [cTOD-21-M17]">
      <seq>aatttttggtttctgagacttaaaaatttattgacaactgtttcaggaatggtatacaacaaaggaggaactcatggcaagatggagtttatggcacaacttgtccaatcctacctggaaagaacttcacttataccctccaagcaaaagaccagataggtagttatttctacttcccatcacttgcaatgcacaaggcagcaggaggatatggtgccatcagagtctatagccgtcctcgaattccagtaccttttgctccacctgctcatgatttcactgtactagctggagacttgtacaagagaagtcacaggcaactgaagtacattttagatagtggtcatgatcttccgttacctgatggtcttattatcaatggtcgaggatggaacggatacacatttacagttgatcaaggtaagacatataggttcaggatatctaatgtggggattgcgacatcaattaatttcagaattcaagggcacacgatgaaactggttgaagttgagggatcacatacacttcagacaacctacacttcacttgacatccatctaggacaatcttattcagttttagtcactgccaatcagcctccaaaggactactacatcgtggtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="106521" stop="107930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106821" g_stop="107137" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107138" i_stop="107231" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107232" g_stop="107334" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="420" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107335" i_stop="107420" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107421" g_stop="107630" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="630" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E334280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106821" e_stop="107137"/>
          <exon e_start="107232" e_stop="107334"/>
          <exon e_start="107421" e_stop="107630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTGGTTTCTGAGACTTAAAAATTTATTGACAACTGTTTCAGGAATGGTATACAACAAAGGAGGAACTCATGGCAAGATGGAGTTTATGGCACAACTTGTCCAATCCTACCTGGAAAGAACTTCACTTATACCCTCCAAGCAAAAGACCAGATAGGTAGTTATTTCTACTTCCCATCACTTGCAATGCACAAGGCAGCAGGAGGATATGGTGCCATCAGAGTCTATAGCCGTCCTCGAATTCCAGTACCTTTTGCTCCACCTGCTCATGATTTCACTGTACTAGCTGGAGACTTGTACAAGAGAAGTCACAGGGTGAGTCCATCTGTTTGGCTTAGTTATCTTTTCAAATGTTTTAACTTGAATGATTTTGGTGCTGAATTTTTATGTGGGGATTTGGTTCTTGCAGCAACTGAAGTACATTTTAGATAGTGGTCATGATCTTCCGTTACCTGATGGTCTTATTATCAATGGTCGAGGATGGAACGGATACACATTTACAGTTGATCAAGGTAAACTGCTAACTTGTCTGCTTAAAAGAATCTTGTTTTTCTGTAATGTGCCTTGTCTTCTTAACATTTCTAAACTCAATGTGTAGGTAAGACATATAGGTTCAGGATATCTAATGTGGGGATTGCGACATCAATTAATTTCAGAATTCAAGGGCACACGATGAAACTGGTTGAAGTTGAGGGATCACATACACTTCAGACAACCTACACTTCACTTGACATCCATCTAGGACAATCTTATTCAGTTTTAGTCACTGCCAATCAGCCTCCAAAGGACTACTACATCGTGGTCTCTT</genome_strand>
        <mrna_strand>AATTTTTGGTTTCTGAGACTTAAAAATTTATTGACAACTGTTTCAGGAATGGTATACAACAAAGGAGGAACTCATGGCAAGATGGAGTTTATGGCACAACTTGTCCAATCCTACCTGGAAAGAACTTCACTTATACCCTCCAAGCAAAAGACCAGATAGGTAGTTATTTCTACTTCCCATCACTTGCAATGCACAAGGCAGCAGGAGGATATGGTGCCATCAGAGTCTATAGCCGTCCTCGAATTCCAGTACCTTTTGCTCCACCTGCTCATGATTTCACTGTACTAGCTGGAGACTTGTACAAGAGAAGTCACAGG..............................................................................................CAACTGAAGTACATTTTAGATAGTGGTCATGATCTTCCGTTACCTGATGGTCTTATTATCAATGGTCGAGGATGGAACGGATACACATTTACAGTTGATCAAG......................................................................................GTAAGACATATAGGTTCAGGATATCTAATGTGGGGATTGCGACATCAATTAATTTCAGAATTCAAGGGCACACGATGAAACTGGTTGAAGTTGAGGGATCACATACACTTCAGACAACCTACACTTCACTTGACATCCATCTAGGACAATCTTATTCAGTTTTAGTCACTGCCAATCAGCCTCCAAAGGACTACTACATCGTGGTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372793" ref_strand="+" ref_description="SGN-E372793 [TUS-32-P10](-)">
      <seq>cttaagggacacaattgcacgttgcaccgtccaggtgtatcctaagtcatggaccgcaatatacatggcattggacaatgtaggaatgtggaacataaggtctgagaattggtcaaggaggtacttgggtcaacaattctacttaagagtttactccccagccaattcttggagagatgaactcccaataccaaagaatgctattctttgtggcaaagctagaggtcatcgtactaggcctctttgaaacaatgtagtagttttctgtcacgagagggtgaccggcgtatatcaatgtgagctaagggaaagatttaatctggaaagagttaaagaagctgagtttgcgctatgacttatagctagtctcttcttttccttctatatcatatttgtatcatgtgtttaattgttcaactgtatcatttcacatctcattattttttccccaaacttttggttaaacctacatagattagctgagaataactttctgtacttcaaggtcattcgagttgttgtttatcttgtattcctaaaatatttggaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="108127" stop="109375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108427" g_stop="108460" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108461" i_stop="108554" i_length="94">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108555" g_stop="109081" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="561" r_length="527" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E372793" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108427" e_stop="108460"/>
          <exon e_start="108555" e_stop="109081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGGGACACAATTGCACGTTGCACCGTCCAGGTATGTCAAAACTCAAAACACATCATCTCAACTTTGTTCAATGCTAAAACATCCTTAAACTTATGTTCCAACGTATTTGTTTGATGTAATTCAGGTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACAATACTTTAC</genome_strand>
        <mrna_strand>CTTAAGGGACACAATTGCACGTTGCACCGTCCAG..............................................................................................GTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372794" ref_strand="+" ref_description="SGN-E372794 [TUS-32-P10]">
      <seq>ttaagggacacaattgcacgttgcaccgtccaggtgtatcctaagtcatggaccgcaatatacatggcattggacaatgtaagaatgtggaacataaggtctgagaattggtcaaggaggtacttgggtcaacaattctacttaagagtttactccccagccaattcttggagagatgaactcccaataccaaagaatgctattctttgtggcaaagctagaggtcatcgtactaggcctctttgaaacaatgtagtagttttctgtcacgagagggtgaccggcgtatatcaatgtgagctaagggaaagatttaatctggaaagagttaaagaagctgagtttgcgctatgacttatagctagtctcttcttttccttctatatcatatttgtatcatgtgtttaattgttcaactgtatcatttcacatctcattattttttccccaaacttttggttaaacctacatagattagctgagaataactttctgtacttcaaggtcattcgagttgttgtttatcttgtattcctaaaatatttggaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="108128" stop="109375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108428" g_stop="108460" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108461" i_stop="108554" i_length="94">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108555" g_stop="109082" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="561" r_length="528" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E372794" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108428" e_stop="108460"/>
          <exon e_start="108555" e_stop="109082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGGACACAATTGCACGTTGCACCGTCCAGGTATGTCAAAACTCAAAACACATCATCTCAACTTTGTTCAATGCTAAAACATCCTTAAACTTATGTTCCAACGTATTTGTTTGATGTAATTCAGGTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACAATACTTTACG</genome_strand>
        <mrna_strand>TTAAGGGACACAATTGCACGTTGCACCGTCCAG..............................................................................................GTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAAGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372790" ref_strand="+" ref_description="SGN-E372790 [TUS-32-P2]">
      <seq>ttaagggacacaattgcacgttgcaccgtccaggtgtatcctaagtcatggaccgcaatatacatggcattggacaatgtaggaatgtggaacataaggtctgagaattggtcaaggaggtacttgggtcaacaattctacttaagagtttactccccagccaattcttggagagatgaactcccaataccaaagaatgctattctttgtggcaaagctagaggtcatcgtactaggcctctttgaaacaatgtagtagttttctgtcacgagagggtgaccggcgtatatcaatgtgagctaagggaaagatttaatctggaaagagttaaagaagctgagtttgcgctatgacttatagctagtctcttcttttccttctatatcatatttgtatcatgtgtttaattgttcaactgtatcatttcacatctcattattttttccccaaacttttggttaaacctacatagattagctgagaataactttctgtacttcaaggtcattcgagttgttgtttatcttgtattcctaaaatatttggaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="108128" stop="109375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108428" g_stop="108460" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108461" i_stop="108554" i_length="94">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108555" g_stop="109082" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="561" r_length="528" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E372790" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108428" e_stop="108460"/>
          <exon e_start="108555" e_stop="109082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGGACACAATTGCACGTTGCACCGTCCAGGTATGTCAAAACTCAAAACACATCATCTCAACTTTGTTCAATGCTAAAACATCCTTAAACTTATGTTCCAACGTATTTGTTTGATGTAATTCAGGTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACAATACTTTACG</genome_strand>
        <mrna_strand>TTAAGGGACACAATTGCACGTTGCACCGTCCAG..............................................................................................GTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298775" ref_strand="+" ref_description="SGN-E298775 [cLET-44-I21]">
      <seq>ttaagggacacaattgcacgttgcaccgtccaggtgtatcctaagtcatggaccgcaatatacatggcattggacaatgtaggaatgtggaacataaggtctgagaattggtcaaggaggtacttgggtcaacaattctacttaagagtttactccccagccaattcttggagagatgaactcccaataccaaagaatgctattctttgtggcaaagctagaggtcatcgtactaggcctctttgaaacaatgtagtagttttctgtcacgagagggtgaccggcgtatatcaatgtgagctaagggaaagatttaatctggaaagagttaaagaagctgagtttgcgctatgacttataactagnctcttcttttccttctatatcatattaggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="108128" stop="109221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108428" g_stop="108460" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108461" i_stop="108554" i_length="94">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108555" g_stop="108921" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="400" r_length="367" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-E298775" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108428" e_stop="108460"/>
          <exon e_start="108555" e_stop="108921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGGACACAATTGCACGTTGCACCGTCCAGGTATGTCAAAACTCAAAACACATCATCTCAACTTTGTTCAATGCTAAAACATCCTTAAACTTATGTTCCAACGTATTTGTTTGATGTAATTCAGGTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCAT</genome_strand>
        <mrna_strand>TTAAGGGACACAATTGCACGTTGCACCGTCCAG..............................................................................................GTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAACTAGNCTCTTCTTTTCCTTCTATATCATATTAGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>322</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="657" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="657" e_stop="331"/>
            <exon e_start="238" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="657" e_stop="331" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="330" i_stop="239" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="238" e_stop="1" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="657" stop="331"/>
              <exon start="238" stop="52"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="588" stop="331"/>
              <exon start="238" stop="125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="582" stop="331"/>
              <exon start="238" stop="56"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="582" stop="331"/>
              <exon start="238" stop="61"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="565" stop="331"/>
              <exon start="238" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="565" stop="331"/>
              <exon start="238" stop="81"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="565" stop="402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="563" stop="331"/>
              <exon start="238" stop="61"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="563" stop="331"/>
              <exon start="238" stop="227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="562" stop="331"/>
              <exon start="238" stop="61"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="560" stop="331"/>
              <exon start="238" stop="107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="557" stop="331"/>
              <exon start="238" stop="170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="554" stop="331"/>
              <exon start="238" stop="131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="551" stop="331"/>
              <exon start="238" stop="161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="550" stop="331"/>
              <exon start="238" stop="80"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="546" stop="331"/>
              <exon start="238" stop="80"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="545" stop="331"/>
              <exon start="238" stop="79"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277736" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="480" stop="331"/>
              <exon start="238" stop="70"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAGGTCATTTTCTTTGAGGACATTTTAGGCACTTTCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG : TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAG</gDNA_template>
            <first_frame> E  R  G  H  F  L  *  G  H  F  R  H  F  L  P  L  F  K  K  V  S  K  *  S  S  K  E  Q  P  L  L  T  I  *  Q  S  K  M  A  T  K  H  L  F  F  F  A  I  L  L  F  S  A  A  S  V  F  A  E  E  N  P  S  L  V  M  D  Y  Y  K  D  T  C  P  Q  A  E  E  I  I  K  E  Q  V  K  L  L  Y  K  R  H  K  N  T  A  F  S  W  L  R  N  I  F  H  D  C  F  V  E  :  S  C  D  A  S  L  L  L  D  S  T  R  R  M  L  S  E  K  E  T  D  R  S  F  G  M  R  N  F  R  Y  I  E  T  I  K  E  A  V  E  R  E  C  P  G  V  V  S  C  A  D  I  L  V  L  S  G  R  D  G  I  V  A  V  S  C  Y  F  V  V  D  L  D  L  F  M  Y  F  *  </first_frame>
            <second_frame>  K  E  V  I  F  F  E  D  I  L  G  T  F  S  H  Y  L  R  R  Y  L  S  D  H  P  K  N  N  L  Y  *  P  F  S  K  V  K  W  L  P  N  I  F  F  S  L  L  F  S  C  F  Q  L  P  L  F  L  Q  R  K  I  L  A  L  *  W  T  I  T  R  T  L  A  L  K  L  K  K  S  S  K  N  K  S  N  F  S  T  N  A  T  R  I  L  H  F  L  G  *  E  T  Y  S  M  T  A  L  L  S :   H  V  M  L  P  C  C  W  T  Q  Q  G  G  C  C  L  R  K  R  Q  T  G  V  L  V  *  E  I  S  D  T  L  R  L  L  K  K  L  *  K  G  S  A  L  V  L  F  L  V  L  I  F  L  C  C  L  V  E  M  V  L  L  L  *  V  V  T  L  *  *  I  W  T  C  L  C  I  F  E </second_frame>
            <third_frame>   K  R  S  F  S  L  R  T  F  *  A  L  S  P  I  I  *  E  G  I  *  V  I  I  Q  R  T  T  S  T  D  H  L  A  K  *  N  G  Y  Q  T  S  F  F  L  C  Y  S  L  V  F  S  C  L  C  F  C  R  G  K  S  *  P  C  N  G  L  L  Q  G  H  L  P  S  S  *  R  N  H  Q  R  T  S  Q  T  S  L  Q  T  P  Q  E  Y  C  I  F  L  A  K  K  H  I  P  *  L  L  C  *   : V  M  *  C  F  L  V  A  G  L  N  K  E  D  A  V  *  E  R  D  R  Q  E  F  W  Y  E  K  F  Q  I  H  *  D  Y  *  R  S  C  R  K  G  V  P  W  C  C  F  L  C  *  Y  S  C  V  V  W  *  R  W  Y  C  C  C  K  L  L  L  C  S  R  S  G  L  V  Y  V  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="555" stop="331"/>
                    <exon start="238" stop="2"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSKMATKHLFFFAILLFSAASVFAEENPSLVMDYYKDTCPQAEEIIKEQVKLLYKRHKNTAFSWLRNIFHDCFVESCDASLLLDSTRRMLSEKETDRSFGMRNFRYIETIKEAVERECPGVVSCADILVLSGRDGIVAVSCYFVVDLDLFMYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6757" PGL_stop="8321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6757" e_stop="8321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6757" e_stop="8321" e_length="1565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6757" stop="7444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6775" stop="7509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6831" stop="8294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6832" stop="7337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6845" stop="7729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6854" stop="7408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6858" stop="7341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6858" stop="7168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6869" stop="7735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6869" stop="7685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6875" stop="7687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6875" stop="7167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6876" stop="7730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="7461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="7438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="7407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="7303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="7196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="7036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6878" stop="7598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6878" stop="7470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6878" stop="7470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6878" stop="7456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6883" stop="7339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6884" stop="7726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6885" stop="7686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6887" stop="7239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6888" stop="7573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6895" stop="7735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6897" stop="7635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6897" stop="7541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6898" stop="7730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6901" stop="7731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6901" stop="7341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6902" stop="7780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6903" stop="7735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6906" stop="7734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6906" stop="7584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6908" stop="7594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6909" stop="7407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6909" stop="7346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6911" stop="7466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6913" stop="7275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6918" stop="7821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6918" stop="7455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6920" stop="7730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6920" stop="7730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6920" stop="7643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6920" stop="7630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6921" stop="7820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6923" stop="7456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6928" stop="7413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6928" stop="7373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6928" stop="7335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6933" stop="7358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6934" stop="7776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6934" stop="7243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6938" stop="7732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6938" stop="7471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6939" stop="7113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6942" stop="7342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6943" stop="7342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6945" stop="7598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6946" stop="7773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6948" stop="7834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6948" stop="7832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6953" stop="7908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6959" stop="7729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6988" stop="7590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7086" stop="7619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7089" stop="7953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7096" stop="7448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7106" stop="7600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7168" stop="8089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7211" stop="8122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7264" stop="7432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7343" stop="8075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7396" stop="7749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7476" stop="8074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7476" stop="8049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7476" stop="7919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7507" stop="8021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7519" stop="7814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7539" stop="8303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7539" stop="8276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7539" stop="8177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7543" stop="8063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7657" stop="8297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7660" stop="8297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7690" stop="8276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7743" stop="8297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7810" stop="8276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284204" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7829" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7829" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7829" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7834" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7834" stop="8321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7886" stop="8276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7888" stop="8269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7915" stop="8319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7918" stop="8297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7947" stop="8265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8010" stop="8290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATCCTTAAACCTGATCCGATTGGCCCTTCCCTCCACCTCTCATTCCCTCCTTCTCCCTTCACCCCACACCACCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTACTTCATAGTG</gDNA_template>
            <first_frame> L  I  L  K  P  D  P  I  G  P  S  L  H  L  S  F  P  P  S  P  F  T  P  H  H  Q  N  T  Q  D  F  H  H  S  D  K  N  P  Q  N  K  T  Q  S  L  S  L  P  L  H  S  L  E  Q  P  H  S  *  A  K  R  K  N  M  S  C  S  N  L  T  M  L  V  S  S  K  P  S  L  S  E  S  S  A  L  S  F  R  S  A  V  S  S  F  Q  L  P  N  H  N  L  S  G  P  S  N  P  S  R  S  S  S  V  I  P  V  R  C  G  L  R  D  L  R  D  R  I  D  S  V  K  N  T  Q  K  I  T  E  A  M  K  L  V  A  A  A  K  V  R  R  A  Q  E  A  V  V  G  A  R  P  F  S  E  T  L  V  E  V  L  Y  N  I  N  E  Q  L  Q  T  D  D  I  D  V  P  L  T  K  V  R  P  V  K  K  V  A  L  V  V  V  T  G  D  R  G  L  C  G  G  F  N  N  Y  I  I  K  K  A  E  A  R  I  R  D  L  K  A  L  G  L  D  Y  T  I  I  S  V  G  K  K  G  N  S  Y  F  L  R  R  P  Y  I  P  V  D  K  F  L  E  G  S  N  L  P  T  A  K  D  A  Q  A  I  A  D  D  V  F  S  F  F  V  S  E  E  V  D  K  V  E  L  L  Y  T  K  F  V  S  L  V  K  S  E  P  V  I  H  T  L  L  P  L  S  P  K  G  E  I  C  D  I  N  G  N  C  V  D  A  A  E  D  E  F  F  R  L  T  T  K  E  G  K  L  T  V  E  R  D  V  M  R  T  K  T  T  D  F  S  A  I  L  Q  F  E  Q  D  P  V  Q  I  L  D  A  L  L  P  L  Y  L  N  S  Q  I  L  R  A  L  Q  E  S  L  A  S  E  L  A  S  R  M  S  A  M  S  S  A  T  D  N  A  S  E  L  K  K  N  L  S  R  V  Y  N  R  Q  R  Q  A  K  I  T  G  E  I  L  E  I  V  A  G  A  D  A  L  V  *  A  Y  P  L  Q  L  C  F  S  V  G  T  I  M  K  S  R  Q  F  L  F  S  A  S  Q  P  R  T  D  F  V  H  K  K  R  T  T  L  Y  F  V  H  K  A  R  P  N  L  Y  L  Y  V  N  F  F  L  L  Y  L  *  N  M  N  Y  *  K  P  E  I  F  N  P  S  Y  S  F  S  T  S  *   </first_frame>
            <second_frame>  L  S  L  N  L  I  R  L  A  L  P  S  T  S  H  S  L  L  L  P  S  P  H  T  T  K  T  P  K  I  S  T  I  L  I  R  I  L  K  T  K  P  N  L  Y  P  S  H  F  T  L  W  S  S  H  I  P  E  L  K  E  K  T  C  L  V  Q  I  *  Q  C  W  C  P  Q  N  H  L  F  L  N  P  L  P  F  L  S  A  L  L  S  A  L  F  S  F  L  T  T  T  Y  Q  A  L  Q  T  P  Q  D  H  H  Q  L  S  L  S  D  V  V  S  V  I  C  V  I  E  L  T  L  S  R  T  H  R  R  L  L  R  L  *  S  L  W  L  L  L  K  S  E  E  H  K  K  L  L  W  V  R  G  L  S  L  R  L  W  L  R  Y  F  T  T  S  M  S  S  S  R  Q  M  T  L  M  Y  H  S  P  K  *  D  L  S  R  K  W  R  W  W  L  S  P  V  T  G  V  F  V  V  V  L  T  T  I  S  S  K  K  L  R  P  G  L  E  I  *  K  L  L  A  L  I  T  L  L  S  V  L  A  K  R  V  I  L  I  S  S  A  G  L  T  S  L  *  I  N  F  L  K  E  A  I  C  P  L  L  K  M  L  R  P  L  L  M  M  F  S  H  F  S  *  V  K  R  L  T  R  L  S  F  S  T  Q  S  L  C  L  *  *  N  L  S  Q  S  F  T  P  C  F  H  C  H  Q  R  E  R  F  V  T  S  T  G  T  V  L  M  Q  L  K  M  S  S  L  G  *  Q  Q  R  K  G  N  *  Q  W  K  E  M  S  *  G  L  R  Q  L  I  F  Q  Q  S  C  N  S  S  R  T  L  F  R  F  L  M  P  C  C  H  F  T  *  T  V  K  S  *  G  H  C  R  S  H  *  P  V  S  L  L  L  G  *  V  P  *  A  V  Q  Q  I  M  H  L  N  *  R  R  I  Y  L  E  C  T  T  D  S  V  R  Q  R  L  P  E  K  Y  W  R  L  L  L  E  Q  M  P  W  F  K  H  I  P  C  N  C  A  S  L  *  V  Q  *  *  S  L  D  N  F  Y  F  L  L  L  N  L  V  Q  T  L  C  T  R  R  E  P  H  Y  I  L  Y  T  R  P  D  Q  T  Y  I  C  M  S  I  F  F  C  Y  I  C  K  T  *  I  I  E  S  L  K  S  S  I  P  R  I  A  F  L  L  H  S  </second_frame>
            <third_frame>   Y  P  *  T  *  S  D  W  P  F  P  P  P  L  I  P  S  F  S  L  H  P  T  P  P  K  H  P  R  F  P  P  F  *  *  E  S  S  K  Q  N  P  I  F  I  P  P  T  S  L  F  G  A  A  T  F  L  S  *  K  K  K  H  V  L  F  K  F  D  N  V  G  V  L  K  T  I  S  F  *  I  L  C  P  F  F  P  L  C  C  Q  L  F  S  A  S  *  P  Q  P  I  R  P  F  K  P  L  K  I  I  I  S  Y  P  C  P  M  W  S  P  *  S  A  *  S  N  *  L  C  Q  E  H  T  E  D  Y  *  G  Y  E  A  C  G  C  C  *  S  Q  K  S  T  R  S  C  C  G  C  E  A  F  L  *  D  F  G  *  G  T  L  Q  H  Q  *  A  A  P  D  R  *  H  *  C  T  T  H  Q  S  K  T  C  Q  E  S  G  V  G  G  C  H  R  *  P  G  S  L  W  W  F  *  Q  L  Y  H  Q  K  S  *  G  Q  D  *  R  F  E  S  S  W  P  *  L  H  Y  Y  Q  C  W  Q  K  G  *  F  L  F  P  P  Q  A  L  H  P  C  R  *  I  S  *  R  K  Q  S  A  H  C  *  R  C  S  G  H  C  *  *  C  F  L  I  F  R  E  *  R  G  *  Q  G  *  A  S  L  H  K  V  C  V  F  S  E  I  *  A  S  H  S  H  P  A  S  I  V  T  K  G  R  D  L  *  H  Q  R  E  L  C  *  C  S  *  R  *  V  L  *  V  D  N  K  G  R  E  I  D  S  G  K  R  C  H  E  D  *  D  N  *  F  F  S  N  L  A  I  R  A  G  P  C  S  D  S  *  C  L  A  A  T  L  L  E  Q  S  N  P  E  G  I  A  G  V  I  S  Q  *  A  C  F  *  D  E  C  H  E  Q  C  N  R  *  C  I  *  I  E  E  E  S  I  *  S  V  Q  Q  T  A  S  G  K  D  Y  R  R  N  I  G  D  C  C  W  S  R  C  L  G  L  S  I  S  P  A  I  V  L  L  C  R  Y  N  N  E  V  *  T  I  F  I  F  C  F  S  T  S  Y  R  L  C  A  Q  E  E  N  H  I  I  F  C  T  Q  G  Q  T  K  P  I  F  V  C  Q  F  F  S  A  I  F  V  K  H  E  L  L  K  A  *  N  L  Q  S  L  V  *  L  F  Y  F  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6931" stop="8079"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKRKNMSCSNLTMLVSSKPSLSESSALSFRSAVSSFQLPNHNLSGPSNPSRSSSVIPVRCGLRDLRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVGARPFSETLVEVLYNINEQLQTDDIDVPLTKVRPVKKVALVVVTGDRGLCGGFNNYIIKKAEARIRDLKALGLDYTIISVGKKGNSYFLRRPYIPVDKFLEGSNLPTAKDAQAIADDVFSFFVSEEVDKVELLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGNCVDAAEDEFFRLTTKEGKLTVERDVMRTKTTDFSAILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSSATDNASELKKNLSRVYNRQRQAKITGEILEIVAGADALV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10824" PGL_stop="10307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10824" e_stop="10307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10824" e_stop="10307" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10824" stop="10307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10824" stop="10317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10824" stop="10318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351911" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAATAGATTTGGATTTGGATTTGTTTTTTTTTTAGAACATAA</gDNA_template>
            <first_frame> K  Y  R  R  R  K  K  *  N  Q  R  *  E  A  E  T  *  D  L  Q  C  R  R  I  I  H  I  *  S  Q  E  R  *  P  K  S  G  I  P  K  S  L  L  N  Q  K  Y  *  T  I  L  K  L  *  L  *  *  T  T  K  H  P  I  Q  E  S  E  F  H  S  Q  H  Q  S  W  R  A  F  L  A  L  I  *  R  S  R  A  T  A  L  A  A  F  R  G  R  S  S  V  Q  L  H  P  F  S  M  T  R  L  S  L  P  Y  N  P  L  L  Q  Q  R  V  F  L  K  L  N  F  F  S  Y  I  T  C  F  I  F  I  C  G  *  S  L  C  G  F  *  *  M  *  V  M  Y  L  P  *  I  T  T  K  N  R  F  G  F  G  F  V  F  F  L  E  H   </first_frame>
            <second_frame>  N  T  E  E  E  K  N  E  I  K  D  E  K  Q  K  L  E  I  F  N  A  V  V  L  Y  I  S  E  A  R  S  V  S  P  N  Q  E  F  Q  N  H  C  *  I  K  S  T  E  Q  S  *  N  S  N  C  D  E  P  P  N  I  R  F  R  N  R  S  F  T  A  S  T  N  H  G  E  R  S  L  L  *  F  E  D  Q  E  Q  P  P  L  L  P  S  E  E  E  A  Q  C  S  C  T  H  F  L  *  P  V  S  R  Y  H  I  I  R  Y  Y  S  K  G  F  F  L  N  *  T  F  F  L  I  L  P  V  L  F  L  F  V  G  K  V  Y  V  A  S  D  E  C  K  *  C  I  Y  L  E  L  R  R  R  I  D  L  D  L  D  L  F  F  F  *  N  I  </second_frame>
            <third_frame>   I  Q  K  K  K  K  M  K  S  K  M  R  S  R  N  L  R  S  S  M  P  S  Y  Y  T  Y  L  K  P  G  A  L  A  Q  I  R  N  S  K  I  T  A  K  S  K  V  L  N  N  P  K  T  L  I  V  M  N  H  Q  T  S  D  S  G  I  G  V  S  Q  P  A  P  I  M  E  S  V  P  C  F  N  L  K  I  K  S  N  R  P  C  C  L  Q  R  K  K  L  S  A  V  A  P  I  F  Y  D  P  S  L  V  T  I  *  S  A  T  T  A  K  G  F  S  *  I  E  L  F  F  L  Y  Y  L  F  Y  F  Y  L  W  V  K  F  M  W  L  L  M  N  V  S  N  V  F  T  L  N  Y  D  E  E  *  I  W  I  W  I  C  F  F  F  R  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10822" stop="10484"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQKKKKMKSKMRSRNLRSSMPSYYTYLKPGALAQIRNSKITAKSKVLNNPKTLIVMNHQTSDSGIGVSQPAPIMESVPCFNLKIKSNRPCCLQRKKLSAVAPIFYDPSLVTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14108" PGL_stop="13522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14108" e_stop="13522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14108" e_stop="13522" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14108" stop="13522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATGAAATCCTCCATGAGAACTAGAACTTCCAGATCTGCAACCCCATCATTTCACACATTCTTGAAACCAGGTGCACTTGCCCAGCTTAGATACTCCAAAATCTCGGCTAAATCAAGGTTGAAAAATGCTCAATCTTATCAGCACATACCCCTTTCGGTGGTACCTTCATCCCTTCCTTTACCAACCATGGAAAGCCTTCCCTGTTTCAATTCATCGATCCGGATTCGCCAGCCTCGGTTTATCCAGAGAAAGAAGCTCAGCGCCGTTGCGCCCATTTTTACTGAATCCAATTCTTGATCCTTCAGTTGGGTGAGACGCCTCCAGTTTCAACCCCGGTCTGCTGTTGATCTTATTGGGGTTTCAGATTAGTAAGTTATAGTGAAAAAATATACATAAAAAAAAGTGTATCTTTGTTAGATCGGGAGTTCTTTCTCCCCTTCAAAAATTTTAATTTGGTTATTTTCTTGGGGCCTAGTATTGATGTCGGTAAGTGGGGCGAAGATCGTTTGCAGTACATTCTCTTTTCATTTCAACAAACAAAAGATGTAGAAATATACAGTTCATATGAATAAAGAGATCTACATA</gDNA_template>
            <first_frame> L  *  N  P  P  *  E  L  E  L  P  D  L  Q  P  H  H  F  T  H  S  *  N  Q  V  H  L  P  S  L  D  T  P  K  S  R  L  N  Q  G  *  K  M  L  N  L  I  S  T  Y  P  F  R  W  Y  L  H  P  F  L  Y  Q  P  W  K  A  F  P  V  S  I  H  R  S  G  F  A  S  L  G  L  S  R  E  R  S  S  A  P  L  R  P  F  L  L  N  P  I  L  D  P  S  V  G  *  D  A  S  S  F  N  P  G  L  L  L  I  L  L  G  F  Q  I  S  K  L  *  *  K  N  I  H  K  K  K  C  I  F  V  R  S  G  V  L  S  P  L  Q  K  F  *  F  G  Y  F  L  G  A  *  Y  *  C  R  *  V  G  R  R  S  F  A  V  H  S  L  F  I  S  T  N  K  R  C  R  N  I  Q  F  I  *  I  K  R  S  T   </first_frame>
            <second_frame>  Y  E  I  L  H  E  N  *  N  F  Q  I  C  N  P  I  I  S  H  I  L  E  T  R  C  T  C  P  A  *  I  L  Q  N  L  G  *  I  K  V  E  K  C  S  I  L  S  A  H  T  P  F  G  G  T  F  I  P  S  F  T  N  H  G  K  P  S  L  F  Q  F  I  D  P  D  S  P  A  S  V  Y  P  E  K  E  A  Q  R  R  C  A  H  F  Y  *  I  Q  F  L  I  L  Q  L  G  E  T  P  P  V  S  T  P  V  C  C  *  S  Y  W  G  F  R  L  V  S  Y  S  E  K  I  Y  I  K  K  S  V  S  L  L  D  R  E  F  F  L  P  F  K  N  F  N  L  V  I  F  L  G  P  S  I  D  V  G  K  W  G  E  D  R  L  Q  Y  I  L  F  S  F  Q  Q  T  K  D  V  E  I  Y  S  S  Y  E  *  R  D  L  H  </second_frame>
            <third_frame>   M  K  S  S  M  R  T  R  T  S  R  S  A  T  P  S  F  H  T  F  L  K  P  G  A  L  A  Q  L  R  Y  S  K  I  S  A  K  S  R  L  K  N  A  Q  S  Y  Q  H  I  P  L  S  V  V  P  S  S  L  P  L  P  T  M  E  S  L  P  C  F  N  S  S  I  R  I  R  Q  P  R  F  I  Q  R  K  K  L  S  A  V  A  P  I  F  T  E  S  N  S  *  S  F  S  W  V  R  R  L  Q  F  Q  P  R  S  A  V  D  L  I  G  V  S  D  *  *  V  I  V  K  K  Y  T  *  K  K  V  Y  L  C  *  I  G  S  S  F  S  P  S  K  I  L  I  W  L  F  S  W  G  L  V  L  M  S  V  S  G  A  K  I  V  C  S  T  F  S  F  H  F  N  K  Q  K  M  *  K  Y  T  V  H  M  N  K  E  I  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14106" stop="13810"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKSSMRTRTSRSATPSFHTFLKPGALAQLRYSKISAKSRLKNAQSYQHIPLSVVPSSLPLPTMESLPCFNSSIRIRQPRFIQRKKLSAVAPIFTESNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13759" stop="13535"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYWGFRLVSYSEKIYIKKSVSLLDREFFLPFKNFNLVIFLGPSIDVGKWGEDRLQYILFSFQQTKDVEIYSSYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17502" PGL_stop="18189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17502" e_stop="17742"/>
            <exon e_start="18169" e_stop="18189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.876" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="17502" e_stop="17742" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.876">
            <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18169" e_stop="18189" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17502" stop="17742"/>
              <exon start="18169" stop="18189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17503" stop="17742"/>
              <exon start="18169" stop="18189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17503" stop="17742"/>
              <exon start="18169" stop="18189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17503" stop="17742"/>
              <exon start="18169" stop="18189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17503" stop="17742"/>
              <exon start="18169" stop="18189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17503" stop="17742"/>
              <exon start="18169" stop="18189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA : TCTTCTTCATGGAGGAGGGAT</gDNA_template>
            <first_frame> M  K  E  K  R  D  T  S  H  G  M  L  Y  L  I  L  W  *  T  R  V  L  *  R  T  F  L  F  L  Y  C  L  V  L  G  W  V  S  H  G  C  S  I  A  T  A  *  T  I  E  L  H  K  C  L  Q  C  N  N  P  P  Q  D  Q  T  F  S  W  V  C  F  S  W  N  H  K  S  I  S  T   : I  F  F  M  E  E  G  </first_frame>
            <second_frame>  *  R  R  R  E  I  L  H  M  G  C  C  I  *  F  C  G  E  Q  E  F  Y  K  E  H  S  F  F  F  I  A  W  F  L  G  G  S  A  M  D  V  P  L  P  L  H  R  P  L  S  C  T  S  V  S  N  A  I  T  H  L  K  I  K  P  F  L  G  F  V  S  H  G  T  T  S  L  S  V  Q  :  S  S  S  W  R  R  D </second_frame>
            <third_frame>   E  G  E  E  R  Y  F  T  W  D  V  V  F  D  S  V  V  N  K  S  F  I  K  N  I  P  F  S  L  L  L  G  S  W  V  G  Q  P  W  M  F  H  C  H  C  I  D  H  *  V  A  Q  V  S  P  M  Q  *  P  T  S  R  S  N  L  F  L  G  L  F  L  M  E  P  Q  V  Y  Q  Y  N :   L  L  H  G  G  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17545" stop="17742"/>
                    <exon start="18169" stop="18189"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCGEQEFYKEHSFFFIAWFLGGSAMDVPLPLHRPLSCTSVSNAITHLKIKPFLGFVSHGTTSLSVQSSSWRRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="19471" PGL_stop="34578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19471" e_stop="19858"/>
            <exon e_start="20003" e_stop="20217"/>
            <exon e_start="20419" e_stop="20689"/>
            <exon e_start="21117" e_stop="21292"/>
            <exon e_start="22285" e_stop="22392"/>
            <exon e_start="23024" e_stop="23133"/>
            <exon e_start="23802" e_stop="23907"/>
            <exon e_start="25152" e_stop="25322"/>
            <exon e_start="25847" e_stop="25975"/>
            <exon e_start="29828" e_stop="30010"/>
            <exon e_start="30417" e_stop="30548"/>
            <exon e_start="30643" e_stop="30754"/>
            <exon e_start="32048" e_stop="32171"/>
            <exon e_start="34299" e_stop="34578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.877" acc_prob="0.916" e_score="0.995"/>
          <exon-intron don_prob="0.518" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.565" acc_prob="0.938" e_score="0.972"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.486" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.926" e_score="0.968"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="19471" e_stop="19858" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.877" acc_prob="0.916">
            <gDNA_intron_boundary i_start="19859" i_stop="20002" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20003" e_stop="20217" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.518" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20218" i_stop="20418" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20419" e_stop="20689" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.650">
            <gDNA_intron_boundary i_start="20690" i_stop="21116" i_length="427"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="21117" e_stop="21292" e_length="176"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21293" i_stop="22284" i_length="992"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="22285" e_stop="22392" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.565" acc_prob="0.938">
            <gDNA_intron_boundary i_start="22393" i_stop="23023" i_length="631"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23024" e_stop="23133" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23134" i_stop="23801" i_length="668"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23802" e_stop="23907" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.890">
            <gDNA_intron_boundary i_start="23908" i_stop="25151" i_length="1244"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25152" e_stop="25322" e_length="171"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.903">
            <gDNA_intron_boundary i_start="25323" i_stop="25846" i_length="524"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25847" e_stop="25975" e_length="129"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25976" i_stop="29827" i_length="3852"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="29828" e_stop="30010" e_length="183"/>
          </exon>
          <intron i_serial="10" don_prob="0.709" acc_prob="0.486">
            <gDNA_intron_boundary i_start="30011" i_stop="30416" i_length="406"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30417" e_stop="30548" e_length="132"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="30549" i_stop="30642" i_length="94"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="30643" e_stop="30754" e_length="112"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30755" i_stop="32047" i_length="1293"/>
          </intron>
          <exon e_serial="13" e_score="0.968">
            <gDNA_exon_boundary e_start="32048" e_stop="32171" e_length="124"/>
          </exon>
          <intron i_serial="13" don_prob="0.970" acc_prob="0.926">
            <gDNA_intron_boundary i_start="32172" i_stop="34298" i_length="2127"/>
          </intron>
          <exon e_serial="14" e_score="0.950">
            <gDNA_exon_boundary e_start="34299" e_stop="34578" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19471" stop="19858"/>
              <exon start="20003" stop="20217"/>
              <exon start="20419" stop="20641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20030" stop="20217"/>
              <exon start="20419" stop="20689"/>
              <exon start="21117" stop="21288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20466" stop="20689"/>
              <exon start="21117" stop="21292"/>
              <exon start="22285" stop="22392"/>
              <exon start="23024" stop="23133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23069" stop="23133"/>
              <exon start="23802" stop="23907"/>
              <exon start="25152" stop="25322"/>
              <exon start="25847" stop="25975"/>
              <exon start="29828" stop="30010"/>
              <exon start="30417" stop="30548"/>
              <exon start="30643" stop="30754"/>
              <exon start="32048" stop="32081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23108" stop="23133"/>
              <exon start="23802" stop="23907"/>
              <exon start="25152" stop="25322"/>
              <exon start="25847" stop="25975"/>
              <exon start="29828" stop="29990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29886" stop="30010"/>
              <exon start="30417" stop="30548"/>
              <exon start="30643" stop="30754"/>
              <exon start="32048" stop="32171"/>
              <exon start="34299" stop="34578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAACGGAGAGAGCAGGAGAAACTTGCTAAAGAACAAGCTGAAAGAGAGAGACTAGCAGAAGAACAAAGACGAATAGAAGCAGAGAAAGCTGAAATTGAAGCTGACAGAGCACAAGCAAAGGACGAGACTGCAAAGAAAAAGAAAGTATTGCAAGAATTGATGGCAAAGGCCACAAAGACTCGTGATATCACCTGGTACATAGAGCCAAGTGAATTTAAATGCGAGGACAAGGTCAGGTTATACTATAACAAAAGTTCAGGTCCACTATCCCATGCTAAGGACCTGTGGATCCACGGAGGATATAACAATTGGAAGGATGGTTTGTCTATTGTCAAAAAGCTTGTTAAATCTGAGAGAATAGATGGTGATTGGTGGTATACAGAGG : TTGTTATTCCTGATCAGGCACTTGTCTTGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAG : GCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTG : TCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCTATTGCAAAG : GTGGGAGGCCTTGGTGATGTTGTTACTAGTCTTTCCCGTGCTGTTCAAGATTTAAACCATAATGTGGATATTATATTACCTAAGTATGACTGTTTGAAGATGAATAAT : GTGAAGGACTTTCGGTTTCACAAAAGCTACTTTTGGGGTGGGACTGAAATAAAAGTATGGTTTGGAAAGGTGGAAGGACTCTCGGTCTATTTTTTGGAGCCTCAAAACGG : GTTATTTTGGAAAGGGTGCGTATATGGTTGTAGCAACGACGGTGAACGATTTGGTTTCTTCTGTCATGCGGCTTTGGAGTTCCTTCTGCAAGGTGGATTTAGTCCG : GATATCATTCATTGCCATGATTGGTCTAGTGCTCCTGTTGCTTGGCTCTTTAAGGAACAATATACACACTATGGTCTAAGCAAATCTCGTATAGTCTTCACGATACATAATCTTGAATTTGGGGCAGATCTCATTGGGAGAGCAATGACTCATGCAGACAAAGCTACAACA : GTTTCACCAACTTACTCACAGGAGGTGTCTGGAAACCCTGTAATTGCGCCTCACCTTCACAAGTTCCATGGTATAGTGAATGGGATTGACCCAGATATTTGGGATCCTTTAAATGATAAGTTCATTCCG : ATTCCGTACACCTCGGAAAATGTTGTTGAAGGCAAAACAGCAGCCAAGGAAGCTTTGCAGCAAAAACTTGGACTGAAACAGGCTGACCTTCCTTTGGTAGGAATTATCACCCGCTTAACTCACCAGAAAGGAATCCACCTCATTAAACATGCAATTTGGCGTACCTTGGAACGGAACGGACAG : GTAGTCTTGCTTGGTTCTGCTCCTGATCCTAGGATACAAAACGATTTTGTTAATTTGGCAAATCAATTGCACTCCACATATAATGACCGCGCACGACTCTGTCTAACATATGACGAGCCACTCTCTCACCTG : ATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATATTTGAGCCATGTGGACTAACACAACTTACTGCTATGAGATATGGTTCAATTCCAGTCGTGCGTAAAACTGGAG : GACTTTATGATACTGTATTTGATGTTGACCATGACAAAGAGAGAGCACAACAGTGTGGTCTTGGACCTAATGGATTCAGCTTTGATGGAGCAGATGCTGCCGGAGTTGATTATGCTCTGAATAG : AGCTCTCTCTGCTTGGTACGATGGTCGAGATTGGTTCAACTCTTTATGCAAGCAGGTTATGGAACAAGATTGGTCTTGGAACCGACCTGCTCTTGATTATTTGGAGCTTTACCATGCTGCTAGAAAGTTAACGTAGTTAGTTTGTGAGATAGTAGCAGAAAGATTCACGAGATCTGCAGTCTGTACAGGTTCAGTGTTTGCGTCTGGACTGCTTTTTATGTCCTATAACAAAGTATAAATCCTGTCTACCCTGAGATCGATAGCAGACAGTACTCAGTTC</gDNA_template>
            <first_frame> E  K  R  R  E  Q  E  K  L  A  K  E  Q  A  E  R  E  R  L  A  E  E  Q  R  R  I  E  A  E  K  A  E  I  E  A  D  R  A  Q  A  K  D  E  T  A  K  K  K  K  V  L  Q  E  L  M  A  K  A  T  K  T  R  D  I  T  W  Y  I  E  P  S  E  F  K  C  E  D  K  V  R  L  Y  Y  N  K  S  S  G  P  L  S  H  A  K  D  L  W  I  H  G  G  Y  N  N  W  K  D  G  L  S  I  V  K  K  L  V  K  S  E  R  I  D  G  D  W  W  Y  T  E   : V  V  I  P  D  Q  A  L  V  L  D  W  V  F  A  D  G  P  P  K  H  A  I  A  Y  D  N  N  H  R  Q  D  F  H  A  I  V  P  K  Q  I  P  E  E  L  Y  W  V  E  E  E  H  Q  I  F  K  K  L  Q  E  E  R  R  L  R  E  A  A  M  R  A  K  :  A  E  K  T  A  L  L  K  A  E  T  K  E  R  T  M  K  S  F  L  L  S  Q  K  H  V  V  Y  T  E  P  L  D  I  Q  A  G  S  S  V  T  V  Y  Y  N  P  A  N  T  V  L  S  G  K  P  E  I  W  F  R  C  S  F  N  R  W  T  H  R  L  G  P  L  P  P  Q  K  M  L  P  A  E  N  G  T  H  V  K  A  T   : V  K  V  P  L  D  A  Y  M  M  D  F  V  F  S  E  R  E  D  G  G  I  F  D  N  K  S  G  M  D  Y  H  I  P  V  F  G  G  V  A  K  E  P  P  M  H  I  V  H  I  A  V  E  M  A  P  I  A  K  :  V  G  G  L  G  D  V  V  T  S  L  S  R  A  V  Q  D  L  N  H  N  V  D  I  I  L  P  K  Y  D  C  L  K  M  N  N  :  V  K  D  F  R  F  H  K  S  Y  F  W  G  G  T  E  I  K  V  W  F  G  K  V  E  G  L  S  V  Y  F  L  E  P  Q  N  G :   L  F  W  K  G  C  V  Y  G  C  S  N  D  G  E  R  F  G  F  F  C  H  A  A  L  E  F  L  L  Q  G  G  F  S  P  :  D  I  I  H  C  H  D  W  S  S  A  P  V  A  W  L  F  K  E  Q  Y  T  H  Y  G  L  S  K  S  R  I  V  F  T  I  H  N  L  E  F  G  A  D  L  I  G  R  A  M  T  H  A  D  K  A  T  T  :  V  S  P  T  Y  S  Q  E  V  S  G  N  P  V  I  A  P  H  L  H  K  F  H  G  I  V  N  G  I  D  P  D  I  W  D  P  L  N  D  K  F  I  P  :  I  P  Y  T  S  E  N  V  V  E  G  K  T  A  A  K  E  A  L  Q  Q  K  L  G  L  K  Q  A  D  L  P  L  V  G  I  I  T  R  L  T  H  Q  K  G  I  H  L  I  K  H  A  I  W  R  T  L  E  R  N  G  Q  :  V  V  L  L  G  S  A  P  D  P  R  I  Q  N  D  F  V  N  L  A  N  Q  L  H  S  T  Y  N  D  R  A  R  L  C  L  T  Y  D  E  P  L  S  H  L  :  I  Y  A  G  A  D  F  I  L  V  P  S  I  F  E  P  C  G  L  T  Q  L  T  A  M  R  Y  G  S  I  P  V  V  R  K  T  G   : G  L  Y  D  T  V  F  D  V  D  H  D  K  E  R  A  Q  Q  C  G  L  G  P  N  G  F  S  F  D  G  A  D  A  A  G  V  D  Y  A  L  N  R :   A  L  S  A  W  Y  D  G  R  D  W  F  N  S  L  C  K  Q  V  M  E  Q  D  W  S  W  N  R  P  A  L  D  Y  L  E  L  Y  H  A  A  R  K  L  T  *  L  V  C  E  I  V  A  E  R  F  T  R  S  A  V  C  T  G  S  V  F  A  S  G  L  L  F  M  S  Y  N  K  V  *  I  L  S  T  L  R  S  I  A  D  S  T  Q  F </first_frame>
            <second_frame>  R  N  G  E  S  R  R  N  L  L  K  N  K  L  K  E  R  D  *  Q  K  N  K  D  E  *  K  Q  R  K  L  K  L  K  L  T  E  H  K  Q  R  T  R  L  Q  R  K  R  K  Y  C  K  N  *  W  Q  R  P  Q  R  L  V  I  S  P  G  T  *  S  Q  V  N  L  N  A  R  T  R  S  G  Y  T  I  T  K  V  Q  V  H  Y  P  M  L  R  T  C  G  S  T  E  D  I  T  I  G  R  M  V  C  L  L  S  K  S  L  L  N  L  R  E  *  M  V  I  G  G  I  Q  R  :  L  L  F  L  I  R  H  L  S  W  I  G  F  L  L  M  V  H  P  S  M  P  L  L  M  I  T  I  T  A  K  T  S  M  P  L  S  P  S  R  F  R  R  N  Y  I  G  L  R  K  N  I  R  S  L  R  N  F  R  R  R  E  G  L  E  K  P  L  C  V  L  R :   L  K  K  Q  H  F  *  K  L  K  Q  R  K  E  L  *  N  H  F  Y  Y  L  R  S  M  *  Y  I  L  S  L  L  I  S  K  L  E  A  A  S  Q  F  T  I  I  P  P  I  Q  Y  L  V  V  N  L  K  F  G  S  D  V  H  L  I  A  G  H  T  A  *  V  H  C  H  L  R  K  C  C  L  L  K  M  A  P  M  S  K  Q  L  :  S  R  F  H  W  M  H  I  *  W  I  L  Y  F  P  R  E  K  M  V  V  F  L  T  I  R  A  E  W  T  I  T  Y  P  C  L  E  E  S  L  K  N  L  R  C  I  L  S  I  L  L  S  K  W  H  L  L  Q  R :   W  E  A  L  V  M  L  L  L  V  F  P  V  L  F  K  I  *  T  I  M  W  I  L  Y  Y  L  S  M  T  V  *  R  *  I  M :   *  R  T  F  G  F  T  K  A  T  F  G  V  G  L  K  *  K  Y  G  L  E  R  W  K  D  S  R  S  I  F  W  S  L  K  T   : G  Y  F  G  K  G  A  Y  M  V  V  A  T  T  V  N  D  L  V  S  S  V  M  R  L  W  S  S  F  C  K  V  D  L  V  R :   I  S  F  I  A  M  I  G  L  V  L  L  L  L  G  S  L  R  N  N  I  H  T  M  V  *  A  N  L  V  *  S  S  R  Y  I  I  L  N  L  G  Q  I  S  L  G  E  Q  *  L  M  Q  T  K  L  Q  Q :   F  H  Q  L  T  H  R  R  C  L  E  T  L  *  L  R  L  T  F  T  S  S  M  V  *  *  M  G  L  T  Q  I  F  G  I  L  *  M  I  S  S  F  R :   F  R  T  P  R  K  M  L  L  K  A  K  Q  Q  P  R  K  L  C  S  K  N  L  D  *  N  R  L  T  F  L  W  *  E  L  S  P  A  *  L  T  R  K  E  S  T  S  L  N  M  Q  F  G  V  P  W  N  G  T  D  R :   *  S  C  L  V  L  L  L  I  L  G  Y  K  T  I  L  L  I  W  Q  I  N  C  T  P  H  I  M  T  A  H  D  S  V  *  H  M  T  S  H  S  L  T  * :   Y  M  L  V  L  I  S  F  *  F  L  Q  Y  L  S  H  V  D  *  H  N  L  L  L  *  D  M  V  Q  F  Q  S  C  V  K  L  E  :  D  F  M  I  L  Y  L  M  L  T  M  T  K  R  E  H  N  S  V  V  L  D  L  M  D  S  A  L  M  E  Q  M  L  P  E  L  I  M  L  *  I   : E  L  S  L  L  G  T  M  V  E  I  G  S  T  L  Y  A  S  R  L  W  N  K  I  G  L  G  T  D  L  L  L  I  I  W  S  F  T  M  L  L  E  S  *  R  S  *  F  V  R  *  *  Q  K  D  S  R  D  L  Q  S  V  Q  V  Q  C  L  R  L  D  C  F  L  C  P  I  T  K  Y  K  S  C  L  P  *  D  R  *  Q  T  V  L  S   </second_frame>
            <third_frame>   E  T  E  R  A  G  E  T  C  *  R  T  S  *  K  R  E  T  S  R  R  T  K  T  N  R  S  R  E  S  *  N  *  S  *  Q  S  T  S  K  G  R  D  C  K  E  K  E  S  I  A  R  I  D  G  K  G  H  K  D  S  *  Y  H  L  V  H  R  A  K  *  I  *  M  R  G  Q  G  Q  V  I  L  *  Q  K  F  R  S  T  I  P  C  *  G  P  V  D  P  R  R  I  *  Q  L  E  G  W  F  V  Y  C  Q  K  A  C  *  I  *  E  N  R  W  *  L  V  V  Y  R  G :   C  Y  S  *  S  G  T  C  L  G  L  G  F  C  *  W  S  T  Q  A  C  H  C  L  *  *  Q  S  P  P  R  L  P  C  H  C  P  Q  A  D  S  G  G  I  I  L  G  *  G  R  T  S  D  L  *  E  T  S  G  G  E  K  A  *  R  S  R  Y  A  C  *   : G  *  K  N  S  T  S  E  S  *  N  K  G  K  N  Y  E  I  I  F  T  I  S  E  A  C  S  I  Y  *  A  S  *  Y  P  S  W  K  Q  R  H  S  L  L  *  S  R  Q  Y  S  T  *  W  *  T  *  N  L  V  Q  M  F  I  *  S  L  D  T  P  P  R  S  I  A  T  S  E  N  V  A  C  *  K  W  H  P  C  Q  S  N  C :   Q  G  S  I  G  C  I  Y  D  G  F  C  I  F  R  E  R  R  W  W  Y  F  *  Q  *  E  R  N  G  L  S  H  T  R  V  W  R  S  R  *  R  T  S  D  A  Y  C  P  Y  C  C  R  N  G  T  Y  C  K   : G  G  R  P  W  *  C  C  Y  *  S  F  P  C  C  S  R  F  K  P  *  C  G  Y  Y  I  T  *  V  *  L  F  E  D  E  *   : C  E  G  L  S  V  S  Q  K  L  L  L  G  W  D  *  N  K  S  M  V  W  K  G  G  R  T  L  G  L  F  F  G  A  S  K  R  :  V  I  L  E  R  V  R  I  W  L  *  Q  R  R  *  T  I  W  F  L  L  S  C  G  F  G  V  P  S  A  R  W  I  *  S   : G  Y  H  S  L  P  *  L  V  *  C  S  C  C  L  A  L  *  G  T  I  Y  T  L  W  S  K  Q  I  S  Y  S  L  H  D  T  *  S  *  I  W  G  R  S  H  W  E  S  N  D  S  C  R  Q  S  Y  N   : S  F  T  N  L  L  T  G  G  V  W  K  P  C  N  C  A  S  P  S  Q  V  P  W  Y  S  E  W  D  *  P  R  Y  L  G  S  F  K  *  *  V  H  S   : D  S  V  H  L  G  K  C  C  *  R  Q  N  S  S  Q  G  S  F  A  A  K  T  W  T  E  T  G  *  P  S  F  G  R  N  Y  H  P  L  N  S  P  E  R  N  P  P  H  *  T  C  N  L  A  Y  L  G  T  E  R  T   : G  S  L  A  W  F  C  S  *  S  *  D  T  K  R  F  C  *  F  G  K  S  I  A  L  H  I  *  *  P  R  T  T  L  S  N  I  *  R  A  T  L  S  P   : D  I  C  W  C  *  F  H  S  S  S  F  N  I  *  A  M  W  T  N  T  T  Y  C  Y  E  I  W  F  N  S  S  R  A  *  N  W  R :   T  L  *  Y  C  I  *  C  *  P  *  Q  R  E  S  T  T  V  W  S  W  T  *  W  I  Q  L  *  W  S  R  C  C  R  S  *  L  C  S  E  *  :  S  S  L  C  L  V  R  W  S  R  L  V  Q  L  F  M  Q  A  G  Y  G  T  R  L  V  L  E  P  T  C  S  *  L  F  G  A  L  P  C  C  *  K  V  N  V  V  S  L  *  D  S  S  R  K  I  H  E  I  C  S  L  Y  R  F  S  V  C  V  W  T  A  F  Y  V  L  *  Q  S  I  N  P  V  Y  P  E  I  D  S  R  Q  Y  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19471" stop="19858"/>
                    <exon start="20003" stop="20217"/>
                    <exon start="20419" stop="20689"/>
                    <exon start="21117" stop="21292"/>
                    <exon start="22285" stop="22392"/>
                    <exon start="23024" stop="23133"/>
                    <exon start="23802" stop="23907"/>
                    <exon start="25152" stop="25322"/>
                    <exon start="25847" stop="25975"/>
                    <exon start="29828" stop="30010"/>
                    <exon start="30417" stop="30548"/>
                    <exon start="30643" stop="30754"/>
                    <exon start="32048" stop="32171"/>
                    <exon start="34299" stop="34434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2358</number_coding_nucleotides>
                  <number_encoded_amino_acids>786</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRREQEKLAKEQAERERLAEEQRRIEAEKAEIEADRAQAKDETAKKKKVLQELMAKATKTRDITWYIEPSEFKCEDKVRLYYNKSSGPLSHAKDLWIHGGYNNWKDGLSIVKKLVKSERIDGDWWYTEVVIPDQALVLDWVFADGPPKHAIAYDNNHRQDFHAIVPKQIPEELYWVEEEHQIFKKLQEERRLREAAMRAKAEKTALLKAETKERTMKSFLLSQKHVVYTEPLDIQAGSSVTVYYNPANTVLSGKPEIWFRCSFNRWTHRLGPLPPQKMLPAENGTHVKATVKVPLDAYMMDFVFSEREDGGIFDNKSGMDYHIPVFGGVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLKMNNVKDFRFHKSYFWGGTEIKVWFGKVEGLSVYFLEPQNGLFWKGCVYGCSNDGERFGFFCHAALEFLLQGGFSPDIIHCHDWSSAPVAWLFKEQYTHYGLSKSRIVFTIHNLEFGADLIGRAMTHADKATTVSPTYSQEVSGNPVIAPHLHKFHGIVNGIDPDIWDPLNDKFIPIPYTSENVVEGKTAAKEALQQKLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTYNDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLGPNGFSFDGADAAGVDYALNRALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLELYHAARKLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19471" e_stop="19858"/>
            <exon e_start="20003" e_stop="20217"/>
            <exon e_start="20419" e_stop="20689"/>
            <exon e_start="21117" e_stop="21292"/>
            <exon e_start="21742" e_stop="22071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.877" acc_prob="0.916" e_score="0.995"/>
          <exon-intron don_prob="0.518" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="19471" e_stop="19858" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.877" acc_prob="0.916">
            <gDNA_intron_boundary i_start="19859" i_stop="20002" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20003" e_stop="20217" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.518" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20218" i_stop="20418" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20419" e_stop="20689" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.650">
            <gDNA_intron_boundary i_start="20690" i_stop="21116" i_length="427"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21117" e_stop="21292" e_length="176"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.853">
            <gDNA_intron_boundary i_start="21293" i_stop="21741" i_length="449"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="21742" e_stop="22071" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19471" stop="19858"/>
              <exon start="20003" stop="20217"/>
              <exon start="20419" stop="20641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20030" stop="20217"/>
              <exon start="20419" stop="20689"/>
              <exon start="21117" stop="21288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20531" stop="20689"/>
              <exon start="21117" stop="21292"/>
              <exon start="21742" stop="22071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAACGGAGAGAGCAGGAGAAACTTGCTAAAGAACAAGCTGAAAGAGAGAGACTAGCAGAAGAACAAAGACGAATAGAAGCAGAGAAAGCTGAAATTGAAGCTGACAGAGCACAAGCAAAGGACGAGACTGCAAAGAAAAAGAAAGTATTGCAAGAATTGATGGCAAAGGCCACAAAGACTCGTGATATCACCTGGTACATAGAGCCAAGTGAATTTAAATGCGAGGACAAGGTCAGGTTATACTATAACAAAAGTTCAGGTCCACTATCCCATGCTAAGGACCTGTGGATCCACGGAGGATATAACAATTGGAAGGATGGTTTGTCTATTGTCAAAAAGCTTGTTAAATCTGAGAGAATAGATGGTGATTGGTGGTATACAGAGG : TTGTTATTCCTGATCAGGCACTTGTCTTGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAG : GCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTG : TCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCTATTGCAAAG : TAAACCCAAGAACTATGGAGGATTTTTTTGAACCTCAAAGGCATCTCGTGGACCATGCCCAGGAAGGTCTCAGAGGCTTTAAAGAGTTGGGAGGCATCAGGGATGAATGCAAAGGACAGAAATAGATGGAGAATTATCCGTGCTATATATGGTGGACTATTTGAAAAGAAAGGAACTCTATGTGTTTTAAGAGCATAGAGAATAATGTTCAGATGGTCAAGTTAAACTGCATTTTATTGTTACATTTCTGTATAAATGGTTTCAGTACAATCGATGTACTGTTTTGTGATATAATCCAAGGATACCTATTTCGATTTCTCTTTATCTATT</gDNA_template>
            <first_frame> E  K  R  R  E  Q  E  K  L  A  K  E  Q  A  E  R  E  R  L  A  E  E  Q  R  R  I  E  A  E  K  A  E  I  E  A  D  R  A  Q  A  K  D  E  T  A  K  K  K  K  V  L  Q  E  L  M  A  K  A  T  K  T  R  D  I  T  W  Y  I  E  P  S  E  F  K  C  E  D  K  V  R  L  Y  Y  N  K  S  S  G  P  L  S  H  A  K  D  L  W  I  H  G  G  Y  N  N  W  K  D  G  L  S  I  V  K  K  L  V  K  S  E  R  I  D  G  D  W  W  Y  T  E   : V  V  I  P  D  Q  A  L  V  L  D  W  V  F  A  D  G  P  P  K  H  A  I  A  Y  D  N  N  H  R  Q  D  F  H  A  I  V  P  K  Q  I  P  E  E  L  Y  W  V  E  E  E  H  Q  I  F  K  K  L  Q  E  E  R  R  L  R  E  A  A  M  R  A  K  :  A  E  K  T  A  L  L  K  A  E  T  K  E  R  T  M  K  S  F  L  L  S  Q  K  H  V  V  Y  T  E  P  L  D  I  Q  A  G  S  S  V  T  V  Y  Y  N  P  A  N  T  V  L  S  G  K  P  E  I  W  F  R  C  S  F  N  R  W  T  H  R  L  G  P  L  P  P  Q  K  M  L  P  A  E  N  G  T  H  V  K  A  T   : V  K  V  P  L  D  A  Y  M  M  D  F  V  F  S  E  R  E  D  G  G  I  F  D  N  K  S  G  M  D  Y  H  I  P  V  F  G  G  V  A  K  E  P  P  M  H  I  V  H  I  A  V  E  M  A  P  I  A  K  :  *  T  Q  E  L  W  R  I  F  L  N  L  K  G  I  S  W  T  M  P  R  K  V  S  E  A  L  K  S  W  E  A  S  G  M  N  A  K  D  R  N  R  W  R  I  I  R  A  I  Y  G  G  L  F  E  K  K  G  T  L  C  V  L  R  A  *  R  I  M  F  R  W  S  S  *  T  A  F  Y  C  Y  I  S  V  *  M  V  S  V  Q  S  M  Y  C  F  V  I  *  S  K  D  T  Y  F  D  F  S  L  S  I </first_frame>
            <second_frame>  R  N  G  E  S  R  R  N  L  L  K  N  K  L  K  E  R  D  *  Q  K  N  K  D  E  *  K  Q  R  K  L  K  L  K  L  T  E  H  K  Q  R  T  R  L  Q  R  K  R  K  Y  C  K  N  *  W  Q  R  P  Q  R  L  V  I  S  P  G  T  *  S  Q  V  N  L  N  A  R  T  R  S  G  Y  T  I  T  K  V  Q  V  H  Y  P  M  L  R  T  C  G  S  T  E  D  I  T  I  G  R  M  V  C  L  L  S  K  S  L  L  N  L  R  E  *  M  V  I  G  G  I  Q  R  :  L  L  F  L  I  R  H  L  S  W  I  G  F  L  L  M  V  H  P  S  M  P  L  L  M  I  T  I  T  A  K  T  S  M  P  L  S  P  S  R  F  R  R  N  Y  I  G  L  R  K  N  I  R  S  L  R  N  F  R  R  R  E  G  L  E  K  P  L  C  V  L  R :   L  K  K  Q  H  F  *  K  L  K  Q  R  K  E  L  *  N  H  F  Y  Y  L  R  S  M  *  Y  I  L  S  L  L  I  S  K  L  E  A  A  S  Q  F  T  I  I  P  P  I  Q  Y  L  V  V  N  L  K  F  G  S  D  V  H  L  I  A  G  H  T  A  *  V  H  C  H  L  R  K  C  C  L  L  K  M  A  P  M  S  K  Q  L  :  S  R  F  H  W  M  H  I  *  W  I  L  Y  F  P  R  E  K  M  V  V  F  L  T  I  R  A  E  W  T  I  T  Y  P  C  L  E  E  S  L  K  N  L  R  C  I  L  S  I  L  L  S  K  W  H  L  L  Q  S :   K  P  K  N  Y  G  G  F  F  *  T  S  K  A  S  R  G  P  C  P  G  R  S  Q  R  L  *  R  V  G  R  H  Q  G  *  M  Q  R  T  E  I  D  G  E  L  S  V  L  Y  M  V  D  Y  L  K  R  K  E  L  Y  V  F  *  E  H  R  E  *  C  S  D  G  Q  V  K  L  H  F  I  V  T  F  L  Y  K  W  F  Q  Y  N  R  C  T  V  L  *  Y  N  P  R  I  P  I  S  I  S  L  Y  L   </second_frame>
            <third_frame>   E  T  E  R  A  G  E  T  C  *  R  T  S  *  K  R  E  T  S  R  R  T  K  T  N  R  S  R  E  S  *  N  *  S  *  Q  S  T  S  K  G  R  D  C  K  E  K  E  S  I  A  R  I  D  G  K  G  H  K  D  S  *  Y  H  L  V  H  R  A  K  *  I  *  M  R  G  Q  G  Q  V  I  L  *  Q  K  F  R  S  T  I  P  C  *  G  P  V  D  P  R  R  I  *  Q  L  E  G  W  F  V  Y  C  Q  K  A  C  *  I  *  E  N  R  W  *  L  V  V  Y  R  G :   C  Y  S  *  S  G  T  C  L  G  L  G  F  C  *  W  S  T  Q  A  C  H  C  L  *  *  Q  S  P  P  R  L  P  C  H  C  P  Q  A  D  S  G  G  I  I  L  G  *  G  R  T  S  D  L  *  E  T  S  G  G  E  K  A  *  R  S  R  Y  A  C  *   : G  *  K  N  S  T  S  E  S  *  N  K  G  K  N  Y  E  I  I  F  T  I  S  E  A  C  S  I  Y  *  A  S  *  Y  P  S  W  K  Q  R  H  S  L  L  *  S  R  Q  Y  S  T  *  W  *  T  *  N  L  V  Q  M  F  I  *  S  L  D  T  P  P  R  S  I  A  T  S  E  N  V  A  C  *  K  W  H  P  C  Q  S  N  C :   Q  G  S  I  G  C  I  Y  D  G  F  C  I  F  R  E  R  R  W  W  Y  F  *  Q  *  E  R  N  G  L  S  H  T  R  V  W  R  S  R  *  R  T  S  D  A  Y  C  P  Y  C  C  R  N  G  T  Y  C  K   : V  N  P  R  T  M  E  D  F  F  E  P  Q  R  H  L  V  D  H  A  Q  E  G  L  R  G  F  K  E  L  G  G  I  R  D  E  C  K  G  Q  K  *  M  E  N  Y  P  C  Y  I  W  W  T  I  *  K  E  R  N  S  M  C  F  K  S  I  E  N  N  V  Q  M  V  K  L  N  C  I  L  L  L  H  F  C  I  N  G  F  S  T  I  D  V  L  F  C  D  I  I  Q  G  Y  L  F  R  F  L  F  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19471" stop="19858"/>
                    <exon start="20003" stop="20217"/>
                    <exon start="20419" stop="20689"/>
                    <exon start="21117" stop="21292"/>
                    <exon start="21742" stop="21744"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRREQEKLAKEQAERERLAEEQRRIEAEKAEIEADRAQAKDETAKKKKVLQELMAKATKTRDITWYIEPSEFKCEDKVRLYYNKSSGPLSHAKDLWIHGGYNNWKDGLSIVKKLVKSERIDGDWWYTEVVIPDQALVLDWVFADGPPKHAIAYDNNHRQDFHAIVPKQIPEELYWVEEEHQIFKKLQEERRLREAAMRAKAEKTALLKAETKERTMKSFLLSQKHVVYTEPLDIQAGSSVTVYYNPANTVLSGKPEIWFRCSFNRWTHRLGPLPPQKMLPAENGTHVKATVKVPLDAYMMDFVFSEREDGGIFDNKSGMDYHIPVFGGVAKEPPMHIVHIAVEMAPIAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21745" stop="21939"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQELWRIFLNLKGISWTMPRKVSEALKSWEASGMNAKDRNRWRIIRAIYGGLFEKKGTLCVLRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="38483" PGL_stop="39217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38483" e_stop="39217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38483" e_stop="39217" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38483" stop="39217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38484" stop="39194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAACCAAAGTCCCAAACTTTTTCATTCTTTAAGAGATCTAATTAGAACCAAAGAATGGATGAGTTTAATAGCAACAGAAACAGAGGAAAAACAGAGAAAGATGGAGACTTTGAAGAAGAAGATGTATGGGGTTATGTGAATGAAAGAGATTCATCAACAGTGATTCTTCCAAGAGGAAAAAGTACGTCGCATAAGTCATCATCTTCATCAAGTCCTGTTAAGATTCCAGAATGGTTCAAGAATAGCAATAACAAGAAATCAAGAAGAAGAGTTAGTACTATCATAACAGAGGATGATTCTTCTTTCTCATCAGTTACTTATCCTGGAAATGTCGTGGTCGAAGAAGAAGAAGATGATTATGGTGATGGAATAGTGCCACCCCATGAATATATAGCAAGAAGAGTAGCAAGGAATCAAATAGCTTCATTTTCAATGATGGAAGGTGTTGGAAGGACTCTCAAGGGAAGGGACCTTAGCAAATTGAGGAATGCCATTTTAACTAAGACAGGTTTTTTGGAATAGCTAGCTAGCACCTACTTAGTATTATTATAAGTATAAACTAACAAAATTAGGTCATCCATTTTTCATCAATCATCACATCTTATTATCATTTAGTTTAGTATCATAAGTTCTCATTATGTTTAAAGTATGGCCTTCTTATTTTTAGCTCAGAGATGCAATTTTGGGATTTTTCTTTTATTGGAGAAAAAAAGAAAAGCAGGCTCTGGGATT</gDNA_template>
            <first_frame> Q  K  P  K  S  Q  T  F  S  F  F  K  R  S  N  *  N  Q  R  M  D  E  F  N  S  N  R  N  R  G  K  T  E  K  D  G  D  F  E  E  E  D  V  W  G  Y  V  N  E  R  D  S  S  T  V  I  L  P  R  G  K  S  T  S  H  K  S  S  S  S  S  S  P  V  K  I  P  E  W  F  K  N  S  N  N  K  K  S  R  R  R  V  S  T  I  I  T  E  D  D  S  S  F  S  S  V  T  Y  P  G  N  V  V  V  E  E  E  E  D  D  Y  G  D  G  I  V  P  P  H  E  Y  I  A  R  R  V  A  R  N  Q  I  A  S  F  S  M  M  E  G  V  G  R  T  L  K  G  R  D  L  S  K  L  R  N  A  I  L  T  K  T  G  F  L  E  *  L  A  S  T  Y  L  V  L  L  *  V  *  T  N  K  I  R  S  S  I  F  H  Q  S  S  H  L  I  I  I  *  F  S  I  I  S  S  H  Y  V  *  S  M  A  F  L  F  L  A  Q  R  C  N  F  G  I  F  L  L  L  E  K  K  R  K  A  G  S  G  I </first_frame>
            <second_frame>  K  N  Q  S  P  K  L  F  H  S  L  R  D  L  I  R  T  K  E  W  M  S  L  I  A  T  E  T  E  E  K  Q  R  K  M  E  T  L  K  K  K  M  Y  G  V  M  *  M  K  E  I  H  Q  Q  *  F  F  Q  E  E  K  V  R  R  I  S  H  H  L  H  Q  V  L  L  R  F  Q  N  G  S  R  I  A  I  T  R  N  Q  E  E  E  L  V  L  S  *  Q  R  M  I  L  L  S  H  Q  L  L  I  L  E  M  S  W  S  K  K  K  K  M  I  M  V  M  E  *  C  H  P  M  N  I  *  Q  E  E  *  Q  G  I  K  *  L  H  F  Q  *  W  K  V  L  E  G  L  S  R  E  G  T  L  A  N  *  G  M  P  F  *  L  R  Q  V  F  W  N  S  *  L  A  P  T  *  Y  Y  Y  K  Y  K  L  T  K  L  G  H  P  F  F  I  N  H  H  I  L  L  S  F  S  L  V  S  *  V  L  I  M  F  K  V  W  P  S  Y  F  *  L  R  D  A  I  L  G  F  F  F  Y  W  R  K  K  E  K  Q  A  L  G   </second_frame>
            <third_frame>   K  T  K  V  P  N  F  F  I  L  *  E  I  *  L  E  P  K  N  G  *  V  *  *  Q  Q  K  Q  R  K  N  R  E  R  W  R  L  *  R  R  R  C  M  G  L  C  E  *  K  R  F  I  N  S  D  S  S  K  R  K  K  Y  V  A  *  V  I  I  F  I  K  S  C  *  D  S  R  M  V  Q  E  *  Q  *  Q  E  I  K  K  K  S  *  Y  Y  H  N  R  G  *  F  F  F  L  I  S  Y  L  S  W  K  C  R  G  R  R  R  R  R  *  L  W  *  W  N  S  A  T  P  *  I  Y  S  K  K  S  S  K  E  S  N  S  F  I  F  N  D  G  R  C  W  K  D  S  Q  G  K  G  P  *  Q  I  E  E  C  H  F  N  *  D  R  F  F  G  I  A  S  *  H  L  L  S  I  I  I  S  I  N  *  Q  N  *  V  I  H  F  S  S  I  I  T  S  Y  Y  H  L  V  *  Y  H  K  F  S  L  C  L  K  Y  G  L  L  I  F  S  S  E  M  Q  F  W  D  F  S  F  I  G  E  K  K  K  S  R  L  W  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38531" stop="39007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQRMDEFNSNRNRGKTEKDGDFEEEDVWGYVNERDSSTVILPRGKSTSHKSSSSSSPVKIPEWFKNSNNKKSRRRVSTIITEDDSSFSSVTYPGNVVVEEEEDDYGDGIVPPHEYIARRVARNQIASFSMMEGVGRTLKGRDLSKLRNAILTKTGFLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="47939" PGL_stop="50723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47939" e_stop="48170"/>
            <exon e_start="48306" e_stop="48367"/>
            <exon e_start="49368" e_stop="49423"/>
            <exon e_start="49517" e_stop="49569"/>
            <exon e_start="50254" e_stop="50372"/>
            <exon e_start="50445" e_stop="50723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47939" e_stop="48170" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48306" e_stop="48367" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49368" e_stop="49423" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49517" e_stop="49569" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50254" e_stop="50372" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="50373" i_stop="50444" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50445" e_stop="50723" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47939" stop="48170"/>
              <exon start="48306" stop="48367"/>
              <exon start="49368" stop="49423"/>
              <exon start="49517" stop="49569"/>
              <exon start="50254" stop="50346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48037" stop="48170"/>
              <exon start="48306" stop="48367"/>
              <exon start="49368" stop="49423"/>
              <exon start="49517" stop="49569"/>
              <exon start="50254" stop="50372"/>
              <exon start="50445" stop="50510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48037" stop="48170"/>
              <exon start="48306" stop="48367"/>
              <exon start="49368" stop="49423"/>
              <exon start="49517" stop="49569"/>
              <exon start="50254" stop="50359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48076" stop="48170"/>
              <exon start="48306" stop="48367"/>
              <exon start="49368" stop="49423"/>
              <exon start="49517" stop="49569"/>
              <exon start="50254" stop="50372"/>
              <exon start="50445" stop="50723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48076" stop="48170"/>
              <exon start="48306" stop="48367"/>
              <exon start="49368" stop="49423"/>
              <exon start="49517" stop="49569"/>
              <exon start="50254" stop="50372"/>
              <exon start="50445" stop="50468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48164" stop="48170"/>
              <exon start="48306" stop="48367"/>
              <exon start="49368" stop="49423"/>
              <exon start="49517" stop="49569"/>
              <exon start="50254" stop="50372"/>
              <exon start="50445" stop="50596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49546" stop="49569"/>
              <exon start="50254" stop="50372"/>
              <exon start="50445" stop="50723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279881" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAACGGCACCGTGTTGACCTTTAAAGACACCGCACGACCTCGTATTATTGATCCGACAAATTCTCACCGAACAGAGTTGGAAGCGAAACAAATACTTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTG : GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG : AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG : GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA : ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAG : CTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACAGTTAACTGTAGTTGTTGGTTTGCATTCCACATAAAATCAAATTTATATTCCTCTTTGGAATATCCTTATAACTTACAGATGTTCAACTCTTGATCTCTTATCTTATAGTGCCTTTCGTTTAAATCAA</gDNA_template>
            <first_frame> S  K  R  H  R  V  D  L  *  R  H  R  T  T  S  Y  Y  *  S  D  K  F  S  P  N  R  V  G  S  E  T  N  T  C  K  W  S  F  L  V  N  P  N  F  L  Q  F  I  S  N  K  T  S  S  I  Y  P  L  *  I  P  R  N  C  S  K  T  L  F  N  Y  S  T  F  F  F  S   : G  R  I  K  V  S  V  L  S  W  P  K  V  L  S  S  L  N  T  L  W  :  R  G  G  S  Q  N  L  L  A  S  E  R  S  I  L  I  E  F  R :   *  L  L  R  R  Q  R  R  V  M  S  L  T  S  I  K  R   : N  T  L  S  Q  L  I  *  L  L  V  N  L  F  M  W  C  G  R  G  S  S  S  V  L  Q  R  P  S  L  S  L  S  R  T  L  C  L  Q  Q  :  L  L  *  C  L  Q  F  M  R  K  I  K  M  K  M  D  F  S  T  *  H  T  V  E  K  T  H  L  G  S  L  S  L  E  I  N  I  S  N  V  N  L  T  F  P  *  S  H  H  E  Q  L  T  V  V  V  G  L  H  S  T  *  N  Q  I  Y  I  P  L  W  N  I  L  I  T  Y  R  C  S  T  L  D  L  L  S  Y  S  A  F  R  L  N  Q </first_frame>
            <second_frame>  Q  N  G  T  V  L  T  F  K  D  T  A  R  P  R  I  I  D  P  T  N  S  H  R  T  E  L  E  A  K  Q  I  L  V  N  G  V  S  L  *  I  Q  T  F  S  N  S  L  A  I  K  P  L  Q  F  I  P  F  R  Y  P  E  I  V  Q  K  P  S  S  I  I  R  L  S  S  F  L  :  V  G  S  K  F  Q  S  C  H  G  Q  K  F  F  Q  A  *  T  P  F  G :   E  E  A  V  R  I  F  S  H  P  R  E  V  S  *  S  N  S   : G  D  C  *  E  G  R  E  E  *  C  P  *  H  R  *  K  E  :  I  P  C  P  S  *  F  D  C  W  S  I  C  L  C  G  A  E  E  D  Q  A  R  C  F  K  G  H  L  C  L  C  Q  E  H  F  A  S  N  S :   F  S  D  V  C  N  L  *  G  K  *  R  *  R  W  I  S  L  H  D  I  Q  W  R  K  H  I  W  V  R  *  A  W  K  L  I  S  Q  M  *  I  *  H  F  L  D  L  I  M  N  S  *  L  *  L  L  V  C  I  P  H  K  I  K  F  I  F  L  F  G  I  S  L  *  L  T  D  V  Q  L  L  I  S  Y  L  I  V  P  F  V  *  I   </second_frame>
            <third_frame>   K  T  A  P  C  *  P  L  K  T  P  H  D  L  V  L  L  I  R  Q  I  L  T  E  Q  S  W  K  R  N  K  Y  L  *  M  E  F  P  C  E  S  K  L  S  P  I  H  *  Q  *  N  L  F  N  L  S  P  L  D  T  Q  K  L  F  K  N  P  L  Q  L  F  D  F  L  L  F  W :   *  D  Q  S  F  S  L  V  M  A  K  S  S  F  K  L  E  H  P  L   : E  R  R  Q  S  E  S  S  R  I  R  E  K  Y  P  D  R  I  P  :  V  I  V  E  K  A  E  K  S  D  V  P  D  I  D  K  K  K :   Y  L  V  P  A  D  L  T  V  G  Q  F  V  Y  V  V  R  K  R  I  K  L  G  A  S  K  A  I  F  V  F  V  K  N  T  L  P  P  T   : A  S  L  M  S  A  I  Y  E  E  N  K  D  E  D  G  F  L  Y  M  T  Y  S  G  E  N  T  F  G  F  V  E  L  G  N  *  Y  L  K  C  K  S  D  I  S  L  I  S  S  *  T  V  N  C  S  C  W  F  A  F  H  I  K  S  N  L  Y  S  S  L  E  Y  P  Y  N  L  Q  M  F  N  S  *  S  L  I  L  *  C  L  S  F  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48310" stop="48367"/>
                    <exon start="49368" stop="49423"/>
                    <exon start="49517" stop="49569"/>
                    <exon start="50254" stop="50372"/>
                    <exon start="50445" stop="50551"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQSFSLVMAKSSFKLEHPLERRQSESSRIREKYPDRIPVIVEKAEKSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGASKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGFVELGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="51866" PGL_stop="51163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51866" e_stop="51769"/>
            <exon e_start="51632" e_stop="51163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.094" acc_prob="1.000" e_score="0.980"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="51866" e_stop="51769" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.094" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51768" i_stop="51633" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="51632" e_stop="51163" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51866" stop="51769"/>
              <exon start="51632" stop="51163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAACCTTTTCTCCAAAGAAGAATAAATAATGTTTGCTTCAAGAGAAAGTAACCTTGTGAGTTCGCTAGCAAGTCTTCTATAAAAGGAACACACAG : GATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCTAATAGTATTAGATATCAAAG</gDNA_template>
            <first_frame> R  E  P  F  L  Q  R  R  I  N  N  V  C  F  K  R  K  *  P  C  E  F  A  S  K  S  S  I  K  G  T  H  R :   I  Y  G  *  *  W  T  K  L  G  R  S  M  G  C  R  R  D  R  C  H  G  *  R  *  Q  L  L  *  K  Q  Q  R  Q  *  K  Q  Q  E  S  H  *  F  I  F  I  R  N  W  Q  S  Q  S  C  G  S  G  W  C  T  E  S  E  K  W  S  F  H  V  D  Q  M  G  *  E  Q  I  P  E  E  A  S  L  H  F  M  K  *  G  G  S  R  I  I  *  S  L  S  C  L  L  *  E  D  F  R  S  N  M  S  I  Y  A  L  L  C  F  L  V  V  V  C  F  R  V  S  L  R  S  W  C  K  E  Y  V  C  N  Q  I  T  N  K  V  I  T  I  V  L  S  L  I  V  L  D  I  K  </first_frame>
            <second_frame>  E  N  L  F  S  K  E  E  *  I  M  F  A  S  R  E  S  N  L  V  S  S  L  A  S  L  L  *  K  E  H  T   : G  F  M  A  S  D  G  P  S  W  A  D  Q  W  G  A  G  G  I  G  A  M  D  E  D  D  S  Y  Y  K  S  N  K  D  S  E  N  N  K  K  A  T  S  S  S  S  S  G  I  G  K  V  K  A  V  A  V  A  G  A  Q  K  V  K  N  G  P  S  M  L  I  K  W  V  R  S  K  S  Q  K  K  H  P  S  I  S  *  N  E  E  D  Q  G  L  S  N  L  Y  L  A  F  C  K  R  I  S  D  Q  T  C  L  F  M  R  C  Y  A  S  W  *  *  F  V  S  G  *  V  *  G  H  G  V  K  N  M  Y  A  I  R  L  L  I  R  *  L  Q  L  F  S  L  *  *  Y  *  I  S  K </second_frame>
            <third_frame>   R  T  F  S  P  K  K  N  K  *  C  L  L  Q  E  K  V  T  L  *  V  R  *  Q  V  F  Y  K  R  N  T  Q  :  D  L  W  L  V  M  D  Q  V  G  Q  I  N  G  V  Q  E  G  *  V  P  W  M  K  M  T  A  I  I  K  A  T  K  T  V  K  T  T  R  K  P  L  V  H  L  H  Q  E  L  A  K  S  K  L  W  Q  W  L  V  H  R  K  *  K  M  V  L  P  C  *  S  N  G  L  G  A  N  P  R  R  S  I  P  P  F  H  E  M  R  R  I  K  D  Y  L  I  F  I  L  P  S  V  R  G  F  Q  I  K  H  V  Y  L  C  V  V  M  L  P  G  S  S  L  F  P  G  E  F  K  V  M  V  *  R  I  C  M  Q  S  D  Y  *  *  G  N  Y  N  C  S  L  S  N  S  I  R  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51781" stop="51769"/>
                    <exon start="51632" stop="51373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEHTGFMASDGPSWADQWGAGGIGAMDEDDSYYKSNKDSENNKKATSSSSSGIGKVKAVAVAGAQKVKNGPSMLIKWVRSKSQKKHPSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51741" e_stop="51706"/>
            <exon e_start="51632" e_stop="51163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51741" e_stop="51706" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51705" i_stop="51633" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="51632" e_stop="51163" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51741" stop="51706"/>
              <exon start="51632" stop="51163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTATTAGTTCTACCACTTACAAGCAGTAATAAA : GATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCTAATAGTATTAGATATCAAAG</gDNA_template>
            <first_frame> L  L  L  V  L  P  L  T  S  S  N  K  :  D  L  W  L  V  M  D  Q  V  G  Q  I  N  G  V  Q  E  G  *  V  P  W  M  K  M  T  A  I  I  K  A  T  K  T  V  K  T  T  R  K  P  L  V  H  L  H  Q  E  L  A  K  S  K  L  W  Q  W  L  V  H  R  K  *  K  M  V  L  P  C  *  S  N  G  L  G  A  N  P  R  R  S  I  P  P  F  H  E  M  R  R  I  K  D  Y  L  I  F  I  L  P  S  V  R  G  F  Q  I  K  H  V  Y  L  C  V  V  M  L  P  G  S  S  L  F  P  G  E  F  K  V  M  V  *  R  I  C  M  Q  S  D  Y  *  *  G  N  Y  N  C  S  L  S  N  S  I  R  Y  Q   </first_frame>
            <second_frame>  S  Y  *  F  Y  H  L  Q  A  V  I  K :   I  Y  G  *  *  W  T  K  L  G  R  S  M  G  C  R  R  D  R  C  H  G  *  R  *  Q  L  L  *  K  Q  Q  R  Q  *  K  Q  Q  E  S  H  *  F  I  F  I  R  N  W  Q  S  Q  S  C  G  S  G  W  C  T  E  S  E  K  W  S  F  H  V  D  Q  M  G  *  E  Q  I  P  E  E  A  S  L  H  F  M  K  *  G  G  S  R  I  I  *  S  L  S  C  L  L  *  E  D  F  R  S  N  M  S  I  Y  A  L  L  C  F  L  V  V  V  C  F  R  V  S  L  R  S  W  C  K  E  Y  V  C  N  Q  I  T  N  K  V  I  T  I  V  L  S  L  I  V  L  D  I  K  </second_frame>
            <third_frame>   L  I  S  S  T  T  Y  K  Q  *  *   : R  F  M  A  S  D  G  P  S  W  A  D  Q  W  G  A  G  G  I  G  A  M  D  E  D  D  S  Y  Y  K  S  N  K  D  S  E  N  N  K  K  A  T  S  S  S  S  S  G  I  G  K  V  K  A  V  A  V  A  G  A  Q  K  V  K  N  G  P  S  M  L  I  K  W  V  R  S  K  S  Q  K  K  H  P  S  I  S  *  N  E  E  D  Q  G  L  S  N  L  Y  L  A  F  C  K  R  I  S  D  Q  T  C  L  F  M  R  C  Y  A  S  W  *  *  F  V  S  G  *  V  *  G  H  G  V  K  N  M  Y  A  I  R  L  L  I  R  *  L  Q  L  F  S  L  *  *  Y  *  I  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51706" stop="51373"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFMASDGPSWADQWGAGGIGAMDEDDSYYKSNKDSENNKKATSSSSSGIGKVKAVAVAGAQKVKNGPSMLIKWVRSKSQKKHPSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="53183" PGL_stop="52771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53183" e_stop="52771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53183" e_stop="52771" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="52771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATTATTCCCTTCCTTCATCATTGTCTTCATCGTCATCTTCGTGGCTGTCGAGGAGCAATAGCCGGTCGTGTTCAACTAGCAAGCTGCCACAGGAGAGCTGCAATGGAGCACAACAGGCAGAGCCATTTGCAATACCTGGTGGATATAGTTGGAGTAGTTTTGATGTGAAAAATAGGAAAATGAAGAAATCCAAGTCTACTAGGAGAACTAAGTGACTGTCTTAATACTAGTAATTCTTTTAACATTTGATGTGATTCGATCAACTACTCTGTTTTTTTTCTTTCTTTCTATTACTTGCTAATTTCTAGTATAGTTTGTAGATATTAAGGAGTATCTAACTTTGAATCTCCTATACTATTGTTCTTGGATTATCAATTCTCATAGTGGTCATTCAACTGAGTCTCTCAAA</gDNA_template>
            <first_frame> N  Y  Y  S  L  P  S  S  L  S  S  S  S  S  S  W  L  S  R  S  N  S  R  S  C  S  T  S  K  L  P  Q  E  S  C  N  G  A  Q  Q  A  E  P  F  A  I  P  G  G  Y  S  W  S  S  F  D  V  K  N  R  K  M  K  K  S  K  S  T  R  R  T  K  *  L  S  *  Y  *  *  F  F  *  H  L  M  *  F  D  Q  L  L  C  F  F  S  F  F  L  L  L  A  N  F  *  Y  S  L  *  I  L  R  S  I  *  L  *  I  S  Y  T  I  V  L  G  L  S  I  L  I  V  V  I  Q  L  S  L  S   </first_frame>
            <second_frame>  I  I  I  P  F  L  H  H  C  L  H  R  H  L  R  G  C  R  G  A  I  A  G  R  V  Q  L  A  S  C  H  R  R  A  A  M  E  H  N  R  Q  S  H  L  Q  Y  L  V  D  I  V  G  V  V  L  M  *  K  I  G  K  *  R  N  P  S  L  L  G  E  L  S  D  C  L  N  T  S  N  S  F  N  I  *  C  D  S  I  N  Y  S  V  F  F  L  S  F  Y  Y  L  L  I  S  S  I  V  C  R  Y  *  G  V  S  N  F  E  S  P  I  L  L  F  L  D  Y  Q  F  S  *  W  S  F  N  *  V  S  Q  </second_frame>
            <third_frame>   L  L  F  P  S  F  I  I  V  F  I  V  I  F  V  A  V  E  E  Q  *  P  V  V  F  N  *  Q  A  A  T  G  E  L  Q  W  S  T  T  G  R  A  I  C  N  T  W  W  I  *  L  E  *  F  *  C  E  K  *  E  N  E  E  I  Q  V  Y  *  E  N  *  V  T  V  L  I  L  V  I  L  L  T  F  D  V  I  R  S  T  T  L  F  F  F  F  L  S  I  T  C  *  F  L  V  *  F  V  D  I  K  E  Y  L  T  L  N  L  L  Y  Y  C  S  W  I  I  N  S  H  S  G  H  S  T  E  S  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53183" stop="52965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYYSLPSSLSSSSSSWLSRSNSRSCSTSKLPQESCNGAQQAEPFAIPGGYSWSSFDVKNRKMKKSKSTRRTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="53878" PGL_stop="53203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53878" e_stop="53572"/>
            <exon e_start="53333" e_stop="53203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.737" acc_prob="0.954" e_score="0.997"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="53878" e_stop="53572" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.737" acc_prob="0.954">
            <gDNA_intron_boundary i_start="53571" i_stop="53334" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="53333" e_stop="53203" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53878" stop="53572"/>
              <exon start="53333" stop="53203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216512" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGACGTCACAGCAGTTTCACTCGAGAGGAAAGGGATTACGTTACCGTTTCTCGAAGAAGCGTTGACATTATTCCGGAACCACGGCGGAGAGCGGCGGCGATACCGGTTGCACCACCGCCAAATACGAAGGAGAAGGAATATGTGAAGAGCCTTAAACCGTCCGTTTGGTTAACAGAGGAATTCCCGTTGAAGACGGAAGAGTTGCTGCCGTTACTTGACATATTAGCGAACAAAGTGAAAGCCGTTAGACGAATGAGAGAGCTGTTAACCACCAAGTTCCCTCCGGGGACATTTCCAGTCAAG : TTGGCAATACCAGTGGTCCCTACAGTGAGGGTAGTAATCACATTCACAAAGTTTGTAGAGTTACAACCCATTGAACAGTTCTACACTCCATTTTCAAGTCCAAGGCACCTCCTTCATGGTGGTGATACTGA</gDNA_template>
            <first_frame> T  K  T  S  Q  Q  F  H  S  R  G  K  G  L  R  Y  R  F  S  K  K  R  *  H  Y  S  G  T  T  A  E  S  G  G  D  T  G  C  T  T  A  K  Y  E  G  E  G  I  C  E  E  P  *  T  V  R  L  V  N  R  G  I  P  V  E  D  G  R  V  A  A  V  T  *  H  I  S  E  Q  S  E  S  R  *  T  N  E  R  A  V  N  H  Q  V  P  S  G  D  I  S  S  Q   : V  G  N  T  S  G  P  Y  S  E  G  S  N  H  I  H  K  V  C  R  V  T  T  H  *  T  V  L  H  S  I  F  K  S  K  A  P  P  S  W  W  *  Y  * </first_frame>
            <second_frame>  Q  R  R  H  S  S  F  T  R  E  E  R  D  Y  V  T  V  S  R  R  S  V  D  I  I  P  E  P  R  R  R  A  A  A  I  P  V  A  P  P  P  N  T  K  E  K  E  Y  V  K  S  L  K  P  S  V  W  L  T  E  E  F  P  L  K  T  E  E  L  L  P  L  L  D  I  L  A  N  K  V  K  A  V  R  R  M  R  E  L  L  T  T  K  F  P  P  G  T  F  P  V  K  :  L  A  I  P  V  V  P  T  V  R  V  V  I  T  F  T  K  F  V  E  L  Q  P  I  E  Q  F  Y  T  P  F  S  S  P  R  H  L  L  H  G  G  D  T   </second_frame>
            <third_frame>   K  D  V  T  A  V  S  L  E  R  K  G  I  T  L  P  F  L  E  E  A  L  T  L  F  R  N  H  G  G  E  R  R  R  Y  R  L  H  H  R  Q  I  R  R  R  R  N  M  *  R  A  L  N  R  P  F  G  *  Q  R  N  S  R  *  R  R  K  S  C  C  R  Y  L  T  Y  *  R  T  K  *  K  P  L  D  E  *  E  S  C  *  P  P  S  S  L  R  G  H  F  Q  S  S :   W  Q  Y  Q  W  S  L  Q  *  G  *  *  S  H  S  Q  S  L  *  S  Y  N  P  L  N  S  S  T  L  H  F  Q  V  Q  G  T  S  F  M  V  V  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53877" stop="53572"/>
                    <exon start="53333" stop="53205"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRRHSSFTREERDYVTVSRRSVDIIPEPRRRAAAIPVAPPPNTKEKEYVKSLKPSVWLTEEFPLKTEELLPLLDILANKVKAVRRMRELLTTKFPPGTFPVKLAIPVVPTVRVVITFTKFVELQPIEQFYTPFSSPRHLLHGGDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="67012" PGL_stop="72939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67012" e_stop="67061"/>
            <exon e_start="67202" e_stop="67294"/>
            <exon e_start="67384" e_stop="67584"/>
            <exon e_start="67805" e_stop="67885"/>
            <exon e_start="67950" e_stop="68045"/>
            <exon e_start="70017" e_stop="70094"/>
            <exon e_start="70168" e_stop="70257"/>
            <exon e_start="70337" e_stop="70404"/>
            <exon e_start="72129" e_stop="72210"/>
            <exon e_start="72704" e_stop="72939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.962"/>
          <exon-intron don_prob="0.838" acc_prob="0.979" e_score="0.978"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.908" e_score="0.963"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67012" e_stop="67061" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67062" i_stop="67201" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67202" e_stop="67294" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.983">
            <gDNA_intron_boundary i_start="67295" i_stop="67383" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67384" e_stop="67584" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67585" i_stop="67804" i_length="220"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67805" e_stop="67885" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.898">
            <gDNA_intron_boundary i_start="67886" i_stop="67949" i_length="64"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67950" e_stop="68045" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="68046" i_stop="70016" i_length="1971"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="70017" e_stop="70094" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="70095" i_stop="70167" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="70168" e_stop="70257" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.838" acc_prob="0.979">
            <gDNA_intron_boundary i_start="70258" i_stop="70336" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70337" e_stop="70404" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70405" i_stop="72128" i_length="1724"/>
          </intron>
          <exon e_serial="9" e_score="0.963">
            <gDNA_exon_boundary e_start="72129" e_stop="72210" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.908">
            <gDNA_intron_boundary i_start="72211" i_stop="72703" i_length="493"/>
          </intron>
          <exon e_serial="10" e_score="0.970">
            <gDNA_exon_boundary e_start="72704" e_stop="72939" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67012" stop="67061"/>
              <exon start="67202" stop="67294"/>
              <exon start="67384" stop="67584"/>
              <exon start="67805" stop="67829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67013" stop="67061"/>
              <exon start="67202" stop="67294"/>
              <exon start="67384" stop="67584"/>
              <exon start="67805" stop="67885"/>
              <exon start="67950" stop="68038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67043" stop="67061"/>
              <exon start="67202" stop="67294"/>
              <exon start="67384" stop="67584"/>
              <exon start="67805" stop="67885"/>
              <exon start="67950" stop="68045"/>
              <exon start="70017" stop="70094"/>
              <exon start="70168" stop="70257"/>
              <exon start="70337" stop="70404"/>
              <exon start="72129" stop="72166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67223" stop="67294"/>
              <exon start="67384" stop="67584"/>
              <exon start="67805" stop="67885"/>
              <exon start="67950" stop="68045"/>
              <exon start="70017" stop="70056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="70094"/>
              <exon start="70168" stop="70257"/>
              <exon start="70337" stop="70404"/>
              <exon start="72129" stop="72210"/>
              <exon start="72704" stop="72939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAG : GGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAG : GCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAG : GCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAG : ATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAGAATTCAG : GATGATCCAGATAATATCACCAGATTTCTGATACTAGCGAGGGAGCCCATAATTTCGGGAACTGATAGGCCATATAAG : ACTAGCATTGTCTTCACTTTGGAAGAAGGACCTGGAGTTCTATTCAAGGCCTTAGCAGTTTTTGCTCTGAGAGAGATCAATTTAACAAAG : ATTGAAAGCAGACCACAAAAAAAGCGCCCTTTAAGGGTAGTAGATGACTCCAACAAAGGAAGTGCCAA : GTACTTTGACTACCTCTTTTACATTGACTTTGAAGCATCGATGGCAGACCCTCGTGCTCAATATGCTCTTGAGCATCTTCAG : GAATTTGCAAGATTCATTCGAGTTCTTGGCTGCTATCCCATGGACAAAAATCTATGATTGCTTATCTTTCAGAAGTATATTATAGGAGATTCAACTTGTAGAGGAGTTGTTCAACTTAAATTGTTGTATGTGTATTATCTGCTGGGAACTTCCAGTCCAGTAGGCCATTGTTGTGCCTGCCCTGTGCTCTCATATTCTTTCCATCTGCATTTTAGAAAATTTGTTGGTTCAGTTTA</gDNA_template>
            <first_frame> I  F  L  V  V  N  M  M  V  Q  M  C  E  L  L  I  R :   E  F  Q  V  H  I  V  R  Q  L  H  L  K  H  T  R  N  V  K  L  S  H  V  I  S  L  R  L  H  L  R :   Q  L  N  Y  G  *  *  T  K  L  Y  S  R  L  K  I  Q  L  L  G  A  S  I  V  T  T  I  Y  S  F  G  I  G  C  I  L  W  E  K  F  S  C  L  L  T  T  A  F  W  A  C  Q  E  S  G  K  R  N  *  S  A  S  *  A  T  L  R :   H  L  N  N  A  T  L  C  *  M  S  *  A  L  Q  G  S  V  V  M  I  L  P  V  L  H  R :   *  S  H  L  K  G  R  E  I  L  E  Q  L  Q  V  L  E  L  Q  R  F  M  G  S  A  F  L  L  K  E  F  R :   M  I  Q  I  I  S  P  D  F  *  Y  *  R  G  S  P  *  F  R  E  L  I  G  H  I  R :   L  A  L  S  S  L  W  K  K  D  L  E  F  Y  S  R  P  *  Q  F  L  L  *  E  R  S  I  *  Q  R :   L  K  A  D  H  K  K  S  A  L  *  G  *  *  M  T  P  T  K  E  V  P   : S  T  L  T  T  S  F  T  L  T  L  K  H  R  W  Q  T  L  V  L  N  M  L  L  S  I  F  R :   N  L  Q  D  S  F  E  F  L  A  A  I  P  W  T  K  I  Y  D  C  L  S  F  R  S  I  L  *  E  I  Q  L  V  E  E  L  F  N  L  N  C  C  M  C  I  I  C  W  E  L  P  V  Q  *  A  I  V  V  P  A  L  C  S  H  I  L  S  I  C  I  L  E  N  L  L  V  Q  F  </first_frame>
            <second_frame>  S  F  *  W  S  T  *  W  F  K  C  A  S  C  L  S   : G  N  S  R  C  I  *  *  G  S  C  T  *  S  I  P  E  M  *  N  C  P  M  *  S  V  *  G  C  I  *   : G  S  *  I  M  V  S  R  Q  S  C  T  P  D  *  K  F  S  C  W  E  H  P  S  *  L  R  S  T  P  S  A  *  A  A  Y  C  G  R  S  S  V  A  C  *  P  L  P  S  G  L  A  R  N  Q  E  R  G  I  K  A  R  R  E  P  P  S   : G  T  *  T  M  Q  H  Y  V  E  *  V  R  R  C  K  A  Q  *  *  *  Y  F  Q  C  C  T   : D  S  R  I  *  R  E  E  R  Y  W  S  S  C  K  C  S  S  C  R  D  L  W  A  Q  H  S  C  *  K  N  S   : G  *  S  R  *  Y  H  Q  I  S  D  T  S  E  G  A  H  N  F  G  N  *  *  A  I  *   : D  *  H  C  L  H  F  G  R  R  T  W  S  S  I  Q  G  L  S  S  F  C  S  E  R  D  Q  F  N  K   : D  *  K  Q  T  T  K  K  A  P  F  K  G  S  R  *  L  Q  Q  R  K  C  Q  :  V  L  *  L  P  L  L  H  *  L  *  S  I  D  G  R  P  S  C  S  I  C  S  *  A  S  S   : G  I  C  K  I  H  S  S  S  W  L  L  S  H  G  Q  K  S  M  I  A  Y  L  S  E  V  Y  Y  R  R  F  N  L  *  R  S  C  S  T  *  I  V  V  C  V  L  S  A  G  N  F  Q  S  S  R  P  L  L  C  L  P  C  A  L  I  F  F  P  S  A  F  *  K  I  C  W  F  S  L </second_frame>
            <third_frame>   L  S  S  G  Q  H  D  G  S  N  V  R  V  A  Y  Q  :  G  I  P  G  A  Y  S  E  A  A  A  L  K  A  Y  P  K  C  E  T  V  P  C  D  Q  F  E  A  A  F  K  :  A  V  E  L  W  L  V  D  K  A  V  L  P  I  E  N  S  V  A  G  S  I  H  R  N  Y  D  L  L  L  R  H  R  L  H  I  V  G  E  V  Q  L  L  V  N  H  C  L  L  G  L  P  G  I  R  K  E  E  L  K  R  V  V  S  H  P  Q  :  A  L  E  Q  C  N  I  M  L  N  E  L  G  V  A  R  L  S  S  D  D  T  S  S  A  A  Q  :  I  V  A  S  E  G  K  R  D  T  G  A  V  A  S  A  R  A  A  E  I  Y  G  L  S  I  L  A  E  R  I  Q  :  D  D  P  D  N  I  T  R  F  L  I  L  A  R  E  P  I  I  S  G  T  D  R  P  Y  K  :  T  S  I  V  F  T  L  E  E  G  P  G  V  L  F  K  A  L  A  V  F  A  L  R  E  I  N  L  T  K  :  I  E  S  R  P  Q  K  K  R  P  L  R  V  V  D  D  S  N  K  G  S  A  K :   Y  F  D  Y  L  F  Y  I  D  F  E  A  S  M  A  D  P  R  A  Q  Y  A  L  E  H  L  Q  :  E  F  A  R  F  I  R  V  L  G  C  Y  P  M  D  K  N  L  *  L  L  I  F  Q  K  Y  I  I  G  D  S  T  C  R  G  V  V  Q  L  K  L  L  Y  V  Y  Y  L  L  G  T  S  S  P  V  G  H  C  C  A  C  P  V  L  S  Y  S  F  H  L  H  F  R  K  F  V  G  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67014" stop="67061"/>
                    <exon start="67202" stop="67294"/>
                    <exon start="67384" stop="67584"/>
                    <exon start="67805" stop="67885"/>
                    <exon start="67950" stop="68045"/>
                    <exon start="70017" stop="70094"/>
                    <exon start="70168" stop="70257"/>
                    <exon start="70337" stop="70404"/>
                    <exon start="72129" stop="72210"/>
                    <exon start="72704" stop="72760"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSGQHDGSNVRVAYQGIPGAYSEAAALKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVAGSIHRNYDLLLRHRLHIVGEVQLLVNHCLLGLPGIRKEELKRVVSHPQALEQCNIMLNELGVARLSSDDTSSAAQIVASEGKRDTGAVASARAAEIYGLSILAERIQDDPDNITRFLILAREPIISGTDRPYKTSIVFTLEEGPGVLFKALAVFALREINLTKIESRPQKKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQYALEHLQEFARFIRVLGCYPMDKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79144" PGL_stop="74103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79144" e_stop="79099"/>
            <exon e_start="78863" e_stop="78739"/>
            <exon e_start="78662" e_stop="78538"/>
            <exon e_start="76782" e_stop="76718"/>
            <exon e_start="76641" e_stop="76429"/>
            <exon e_start="75323" e_stop="75276"/>
            <exon e_start="75163" e_stop="75056"/>
            <exon e_start="74689" e_stop="74537"/>
            <exon e_start="74427" e_stop="74103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79144" e_stop="79099" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78863" e_stop="78739" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.840">
            <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78662" e_stop="78538" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.916">
            <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76782" e_stop="76718" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.934">
            <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76641" e_stop="76429" e_length="213"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75323" e_stop="75276" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75163" e_stop="75056" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74689" e_stop="74537" e_length="153"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74427" e_stop="74103" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79144" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79137" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79135" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79134" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79134" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79134" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79133" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79133" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79132" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79132" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79129" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79129" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79128" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79127" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79127" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79124" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79123" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="74644" stop="74537"/>
              <exon start="74427" stop="74157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74571" stop="74537"/>
              <exon start="74427" stop="74161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74423" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74361" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATTCTTCACTTTACCACGACTGATCTCACTCTCTCTCAATCTG : TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA : GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA : ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT : GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG : GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG : TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG : ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA : GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCATTCATCAT</gDNA_template>
            <first_frame> S  I  L  H  F  T  T  T  D  L  T  L  S  Q  S   : V  E  H  G  G  S  K  C  T  S  C  T  K  Y  *  V  V  G  V  A  K  E  R  *  A  Q  N  V  A  C  C  I  S  C  R  *  P  *  T  Y  H  Q  :  V  L  H  R  M  F  W  D  E  I  V  E  A  E  R  Y  S  R  G  E  V  F  E  C  F  S  W  F  W  P  *  R  V  S  L  C  G  *  V  D  I  * :   L  W  S  *  *  V  *  H  R  N  R  L  W  A  F  C  Y  C  H  T  R   : C  L  Q  T  G  *  G  D  K  G  Q  G  W  N  C  H  K  G  A  W  S  C  Q  G  W  I  *  C  Y  C  F  C  Q  R  S  *  W  L  P  I  *  N  H  P  E  R  V  Y  S  *  T  T  L  P  S  D  A  S  C  G  G  S  *  T  C  D  Q  I  L  R  K   : G  T  W  D  A  S  G  E  E  S  *  *  T  R  A  *   : V  Y  H  C  Y  D  G  I  C  S  R  E  R  D  D  C  Y  *  V  D  I  Q  L  W  C  D  *  I  H  K  G  K  C  I  R  T   : D  C  N  R  H  *  *  C  L  Q  K  R  E  G  C  Q  S  C  Y  P  R  A  R  R  K  D  N  *  T  A  R  I  N  S  W  T  *  H  Q  D  N  F  I  S  G  S  R  W  L  E  N   : S  A  G  *  Q  *  G  F  S  E  G  A  R  I  V  Q  V  T  G  Q  E  D  A  C  S  Y  F  T  R  Y  Q  *  I  I  C  C  G  V  Y  L  H  M  Q  T  N  A  Y  V  S  S  T  V  I  N  Y  S  F  K  H  F  S  R  H  F  R  V  L  Q  C  E  F  D  I  S  N  L  L  S  M  S  C  W  F  L  F  T  F  *  V  C  V  C  M  K  L  S  N  Q  Q  V  Q  T  S  N  L  S  F  I   </first_frame>
            <second_frame>  R  F  F  T  L  P  R  L  I  S  L  S  L  N  L  :  *  N  M  A  E  A  S  A  P  A  V  P  S  T  E  L  L  E  W  P  K  K  D  K  R  R  M  L  H  A  V  Y  R  V  G  D  L  E  R  T  I  K :   F  Y  T  E  C  F  G  M  K  L  L  R  Q  R  D  I  P  E  E  K  Y  S  N  A  F  L  G  F  G  P  E  E  S  H  F  V  V  E  L  T  Y   : N  Y  G  V  D  K  Y  D  I  G  T  G  F  G  H  F  A  I  A  T  P  D  :  V  Y  K  L  V  E  E  I  K  A  K  G  G  T  V  T  R  E  P  G  P  V  K  G  G  S  S  V  I  A  F  V  K  D  P  D  G  Y  L  F  E  I  I  Q  R  E  S  T  P  E  P  L  C  Q  V  M  L  R  V  G  D  L  E  R  A  I  K  F  Y  E  K  :  A  L  G  M  Q  V  V  K  K  V  D  R  P  E  H  K  :  Y  T  I  A  M  M  G  Y  A  P  E  K  E  T  T  V  I  E  L  T  Y  N  Y  G  V  T  E  Y  T  K  G  N  A  Y  A  Q  :  I  A  I  G  T  D  D  V  Y  K  S  A  K  V  V  N  L  A  I  Q  E  L  G  G  K  I  T  R  Q  P  G  S  I  P  G  L  N  T  K  I  T  S  F  L  D  P  D  G  W  K  T  :  V  L  V  D  N  K  D  F  L  K  E  L  E  S  S  K  *  L  V  K  K  M  L  V  R  I  S  L  D  I  N  K  *  S  A  V  V  F  I  F  T  C  R  L  M  H  M  C  L  V  P  *  S  T  T  P  L  S  T  S  P  D  I  F  V  C  Y  N  V  N  L  T  S  L  T  C  *  V  C  L  A  G  S  Y  S  P  F  E  F  V  Y  V  *  N  Y  P  I  S  K  C  R  H  Q  I  F  H  S  S  </second_frame>
            <third_frame>   D  S  S  L  Y  H  D  *  S  H  S  L  S  I  C :   R  T  W  R  K  Q  V  H  Q  L  Y  Q  V  L  S  C  W  S  G  Q  R  K  I  S  A  E  C  C  M  L  Y  I  V  S  V  T  L  N  V  P  S   : S  F  T  Q  N  V  L  G  *  N  C  *  G  R  E  I  F  Q  R  R  S  I  R  M  L  F  L  V  L  A  L  K  S  L  T  L  W  L  S  *  H  I  :  I  M  E  L  I  S  M  T  S  E  P  A  L  G  I  L  L  L  P  H  Q  M :   F  T  N  W  L  R  R  *  R  P  R  V  E  L  S  Q  G  S  L  V  L  S  R  V  D  L  V  L  L  L  L  S  K  I  L  M  A  T  Y  L  K  S  S  R  E  S  L  L  L  N  H  F  A  K  *  C  F  V  W  G  I  L  N  V  R  S  N  S  T  K  R :   H  L  G  C  K  W  *  R  K  L  I  D  Q  S  I  S :   I  P  L  L  *  W  D  M  L  Q  R  K  R  R  L  L  L  S  *  H  T  T  M  V  *  L  N  T  Q  R  E  M  H  T  H  R :   L  Q  *  A  L  M  M  S  T  K  A  R  R  L  S  I  L  L  S  K  S  S  E  E  R  *  L  D  S  Q  D  Q  F  L  D  L  T  P  R  *  L  H  F  W  I  Q  M  A  G  K  Q :   C  W  L  T  I  R  I  F  *  R  S  *  N  R  P  S  N  W  S  R  R  C  L  F  V  F  H  *  I  S  I  N  N  L  L  W  C  L  S  S  H  A  D  *  C  I  C  V  *  Y  R  N  Q  L  L  L  *  A  L  L  Q  T  F  S  C  V  T  M  *  I  *  H  L  *  L  A  E  Y  V  L  L  V  P  I  H  L  L  S  L  C  M  Y  E  I  I  Q  S  A  S  A  D  I  K  S  F  I  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78860" stop="78739"/>
                    <exon start="78662" stop="78538"/>
                    <exon start="76782" stop="76718"/>
                    <exon start="76641" stop="76429"/>
                    <exon start="75323" stop="75276"/>
                    <exon start="75163" stop="75056"/>
                    <exon start="74689" stop="74537"/>
                    <exon start="74427" stop="74377"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMAEASAPAVPSTELLEWPKKDKRRMLHAVYRVGDLERTIKFYTECFGMKLLRQRDIPEEKYSNAFLGFGPEESHFVVELTYNYGVDKYDIGTGFGHFAIATPDVYKLVEEIKAKGGTVTREPGPVKGGSSVIAFVKDPDGYLFEIIQRESTPEPLCQVMLRVGDLERAIKFYEKALGMQVVKKVDRPEHKYTIAMMGYAPEKETTVIELTYNYGVTEYTKGNAYAQIAIGTDDVYKSAKVVNLAIQELGGKITRQPGSIPGLNTKITSFLDPDGWKTVLVDNKDFLKELESSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79136" e_stop="79099"/>
            <exon e_start="78860" e_stop="78739"/>
            <exon e_start="78662" e_stop="78538"/>
            <exon e_start="76782" e_stop="76718"/>
            <exon e_start="76641" e_stop="76429"/>
            <exon e_start="75323" e_stop="75276"/>
            <exon e_start="75163" e_stop="75056"/>
            <exon e_start="74689" e_stop="74537"/>
            <exon e_start="74427" e_stop="74103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79136" e_stop="79099" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79098" i_stop="78861" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78860" e_stop="78739" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.840">
            <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78662" e_stop="78538" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.916">
            <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76782" e_stop="76718" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.934">
            <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76641" e_stop="76429" e_length="213"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75323" e_stop="75276" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75163" e_stop="75056" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74689" e_stop="74537" e_length="153"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74427" e_stop="74103" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79136" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79135" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79134" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79134" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79133" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79133" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79133" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79130" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79126" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79126" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79124" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79123" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79123" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79122" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79121" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79121" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79120" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79116" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79115" stop="79099"/>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78852" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78849" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78847" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78845" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78817" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78775" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78762" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78741" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78638" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78614" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78583" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78575" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376813" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76770" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76767" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76762" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76753" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76736" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76731" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76582" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76582" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76582" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76582" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76504" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76492" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577614" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76491" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75299" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75286" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326294" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75159" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75126" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74686" stop="74537"/>
              <exon start="74427" stop="74111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74686" stop="74537"/>
              <exon start="74427" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74652" stop="74537"/>
              <exon start="74427" stop="74159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74644" stop="74537"/>
              <exon start="74427" stop="74157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74571" stop="74537"/>
              <exon start="74427" stop="74161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74423" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74361" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTTTACCACGACTGATCTCACTCTCTCTCAATCTG : AACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA : GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA : ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT : GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG : GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG : TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG : ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA : GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCATTCATCAT</gDNA_template>
            <first_frame> S  L  Y  H  D  *  S  H  S  L  S  I  * :   T  W  R  K  Q  V  H  Q  L  Y  Q  V  L  S  C  W  S  G  Q  R  K  I  S  A  E  C  C  M  L  Y  I  V  S  V  T  L  N  V  P  S   : S  F  T  Q  N  V  L  G  *  N  C  *  G  R  E  I  F  Q  R  R  S  I  R  M  L  F  L  V  L  A  L  K  S  L  T  L  W  L  S  *  H  I  :  I  M  E  L  I  S  M  T  S  E  P  A  L  G  I  L  L  L  P  H  Q  M :   F  T  N  W  L  R  R  *  R  P  R  V  E  L  S  Q  G  S  L  V  L  S  R  V  D  L  V  L  L  L  L  S  K  I  L  M  A  T  Y  L  K  S  S  R  E  S  L  L  L  N  H  F  A  K  *  C  F  V  W  G  I  L  N  V  R  S  N  S  T  K  R :   H  L  G  C  K  W  *  R  K  L  I  D  Q  S  I  S :   I  P  L  L  *  W  D  M  L  Q  R  K  R  R  L  L  L  S  *  H  T  T  M  V  *  L  N  T  Q  R  E  M  H  T  H  R :   L  Q  *  A  L  M  M  S  T  K  A  R  R  L  S  I  L  L  S  K  S  S  E  E  R  *  L  D  S  Q  D  Q  F  L  D  L  T  P  R  *  L  H  F  W  I  Q  M  A  G  K  Q :   C  W  L  T  I  R  I  F  *  R  S  *  N  R  P  S  N  W  S  R  R  C  L  F  V  F  H  *  I  S  I  N  N  L  L  W  C  L  S  S  H  A  D  *  C  I  C  V  *  Y  R  N  Q  L  L  L  *  A  L  L  Q  T  F  S  C  V  T  M  *  I  *  H  L  *  L  A  E  Y  V  L  L  V  P  I  H  L  L  S  L  C  M  Y  E  I  I  Q  S  A  S  A  D  I  K  S  F  I  H  H </first_frame>
            <second_frame>  H  F  T  T  T  D  L  T  L  S  Q  S   : E  H  G  G  S  K  C  T  S  C  T  K  Y  *  V  V  G  V  A  K  E  R  *  A  Q  N  V  A  C  C  I  S  C  R  *  P  *  T  Y  H  Q  :  V  L  H  R  M  F  W  D  E  I  V  E  A  E  R  Y  S  R  G  E  V  F  E  C  F  S  W  F  W  P  *  R  V  S  L  C  G  *  V  D  I  * :   L  W  S  *  *  V  *  H  R  N  R  L  W  A  F  C  Y  C  H  T  R   : C  L  Q  T  G  *  G  D  K  G  Q  G  W  N  C  H  K  G  A  W  S  C  Q  G  W  I  *  C  Y  C  F  C  Q  R  S  *  W  L  P  I  *  N  H  P  E  R  V  Y  S  *  T  T  L  P  S  D  A  S  C  G  G  S  *  T  C  D  Q  I  L  R  K   : G  T  W  D  A  S  G  E  E  S  *  *  T  R  A  *   : V  Y  H  C  Y  D  G  I  C  S  R  E  R  D  D  C  Y  *  V  D  I  Q  L  W  C  D  *  I  H  K  G  K  C  I  R  T   : D  C  N  R  H  *  *  C  L  Q  K  R  E  G  C  Q  S  C  Y  P  R  A  R  R  K  D  N  *  T  A  R  I  N  S  W  T  *  H  Q  D  N  F  I  S  G  S  R  W  L  E  N   : S  A  G  *  Q  *  G  F  S  E  G  A  R  I  V  Q  V  T  G  Q  E  D  A  C  S  Y  F  T  R  Y  Q  *  I  I  C  C  G  V  Y  L  H  M  Q  T  N  A  Y  V  S  S  T  V  I  N  Y  S  F  K  H  F  S  R  H  F  R  V  L  Q  C  E  F  D  I  S  N  L  L  S  M  S  C  W  F  L  F  T  F  *  V  C  V  C  M  K  L  S  N  Q  Q  V  Q  T  S  N  L  S  F  I   </second_frame>
            <third_frame>   T  L  P  R  L  I  S  L  S  L  N  L  :  N  M  A  E  A  S  A  P  A  V  P  S  T  E  L  L  E  W  P  K  K  D  K  R  R  M  L  H  A  V  Y  R  V  G  D  L  E  R  T  I  K :   F  Y  T  E  C  F  G  M  K  L  L  R  Q  R  D  I  P  E  E  K  Y  S  N  A  F  L  G  F  G  P  E  E  S  H  F  V  V  E  L  T  Y   : N  Y  G  V  D  K  Y  D  I  G  T  G  F  G  H  F  A  I  A  T  P  D  :  V  Y  K  L  V  E  E  I  K  A  K  G  G  T  V  T  R  E  P  G  P  V  K  G  G  S  S  V  I  A  F  V  K  D  P  D  G  Y  L  F  E  I  I  Q  R  E  S  T  P  E  P  L  C  Q  V  M  L  R  V  G  D  L  E  R  A  I  K  F  Y  E  K  :  A  L  G  M  Q  V  V  K  K  V  D  R  P  E  H  K  :  Y  T  I  A  M  M  G  Y  A  P  E  K  E  T  T  V  I  E  L  T  Y  N  Y  G  V  T  E  Y  T  K  G  N  A  Y  A  Q  :  I  A  I  G  T  D  D  V  Y  K  S  A  K  V  V  N  L  A  I  Q  E  L  G  G  K  I  T  R  Q  P  G  S  I  P  G  L  N  T  K  I  T  S  F  L  D  P  D  G  W  K  T  :  V  L  V  D  N  K  D  F  L  K  E  L  E  S  S  K  *  L  V  K  K  M  L  V  R  I  S  L  D  I  N  K  *  S  A  V  V  F  I  F  T  C  R  L  M  H  M  C  L  V  P  *  S  T  T  P  L  S  T  S  P  D  I  F  V  C  Y  N  V  N  L  T  S  L  T  C  *  V  C  L  A  G  S  Y  S  P  F  E  F  V  Y  V  *  N  Y  P  I  S  K  C  R  H  Q  I  F  H  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79134" stop="79099"/>
                    <exon start="78860" stop="78739"/>
                    <exon start="78662" stop="78538"/>
                    <exon start="76782" stop="76718"/>
                    <exon start="76641" stop="76429"/>
                    <exon start="75323" stop="75276"/>
                    <exon start="75163" stop="75056"/>
                    <exon start="74689" stop="74537"/>
                    <exon start="74427" stop="74377"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLPRLISLSLNLNMAEASAPAVPSTELLEWPKKDKRRMLHAVYRVGDLERTIKFYTECFGMKLLRQRDIPEEKYSNAFLGFGPEESHFVVELTYNYGVDKYDIGTGFGHFAIATPDVYKLVEEIKAKGGTVTREPGPVKGGSSVIAFVKDPDGYLFEIIQRESTPEPLCQVMLRVGDLERAIKFYEKALGMQVVKKVDRPEHKYTIAMMGYAPEKETTVIELTYNYGVTEYTKGNAYAQIAIGTDDVYKSAKVVNLAIQELGGKITRQPGSIPGLNTKITSFLDPDGWKTVLVDNKDFLKELESSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="79091" e_stop="78739"/>
            <exon e_start="78662" e_stop="78538"/>
            <exon e_start="76782" e_stop="76718"/>
            <exon e_start="76641" e_stop="76429"/>
            <exon e_start="75323" e_stop="75276"/>
            <exon e_start="75163" e_stop="75056"/>
            <exon e_start="74689" e_stop="74537"/>
            <exon e_start="74427" e_stop="74103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.804" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79091" e_stop="78739" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="0.804" acc_prob="0.840">
            <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78662" e_stop="78538" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.916">
            <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76782" e_stop="76718" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.934">
            <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76641" e_stop="76429" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75323" e_stop="75276" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75163" e_stop="75056" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74689" e_stop="74537" e_length="153"/>
          </exon>
          <intron i_serial="7" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74427" e_stop="74103" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79091" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79074" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277909" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78862" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78862" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78860" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78852" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78849" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78847" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78845" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78817" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78775" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78762" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78741" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78638" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78614" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78583" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78575" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376813" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76770" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76767" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76762" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76753" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76736" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76731" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76582" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76582" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76582" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76582" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76504" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76492" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577614" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76491" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75299" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75286" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326294" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75159" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75126" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74686" stop="74537"/>
              <exon start="74427" stop="74111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74686" stop="74537"/>
              <exon start="74427" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74652" stop="74537"/>
              <exon start="74427" stop="74159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74644" stop="74537"/>
              <exon start="74427" stop="74157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74571" stop="74537"/>
              <exon start="74427" stop="74161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74423" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74361" stop="74132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA : GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA : ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT : GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG : GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG : TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG : ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA : GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCATTCATCAT</gDNA_template>
            <first_frame> F  P  L  S  T  Y  F  F  S  L  I  *  G  F  T  L  F  F  N  S  *  W  H  C  K  E  F  L  V  N  A  L  S  N  F  S  S  W  K  I  C  R  D  F  V  I  K  I  S  D  T  S  V  *  F  V  F  F  V  V  C  F  E  I  S  F  F  L  R  I  Y  N  F  Y  L  *  *  N  M  A  E  A  S  A  P  A  V  P  S  T  E  L  L  E  W  P  K  K  D  K  R  R  M  L  H  A  V  Y  R  V  G  D  L  E  R  T  I  K :   F  Y  T  E  C  F  G  M  K  L  L  R  Q  R  D  I  P  E  E  K  Y  S  N  A  F  L  G  F  G  P  E  E  S  H  F  V  V  E  L  T  Y   : N  Y  G  V  D  K  Y  D  I  G  T  G  F  G  H  F  A  I  A  T  P  D  :  V  Y  K  L  V  E  E  I  K  A  K  G  G  T  V  T  R  E  P  G  P  V  K  G  G  S  S  V  I  A  F  V  K  D  P  D  G  Y  L  F  E  I  I  Q  R  E  S  T  P  E  P  L  C  Q  V  M  L  R  V  G  D  L  E  R  A  I  K  F  Y  E  K  :  A  L  G  M  Q  V  V  K  K  V  D  R  P  E  H  K  :  Y  T  I  A  M  M  G  Y  A  P  E  K  E  T  T  V  I  E  L  T  Y  N  Y  G  V  T  E  Y  T  K  G  N  A  Y  A  Q  :  I  A  I  G  T  D  D  V  Y  K  S  A  K  V  V  N  L  A  I  Q  E  L  G  G  K  I  T  R  Q  P  G  S  I  P  G  L  N  T  K  I  T  S  F  L  D  P  D  G  W  K  T  :  V  L  V  D  N  K  D  F  L  K  E  L  E  S  S  K  *  L  V  K  K  M  L  V  R  I  S  L  D  I  N  K  *  S  A  V  V  F  I  F  T  C  R  L  M  H  M  C  L  V  P  *  S  T  T  P  L  S  T  S  P  D  I  F  V  C  Y  N  V  N  L  T  S  L  T  C  *  V  C  L  A  G  S  Y  S  P  F  E  F  V  Y  V  *  N  Y  P  I  S  K  C  R  H  Q  I  F  H  S  S  </first_frame>
            <second_frame>  F  L  S  L  H  I  F  F  L  *  F  R  V  L  L  C  S  S  I  L  D  G  I  V  K  S  F  *  *  M  L  *  V  I  F  H  L  G  R  F  V  G  I  L  *  *  K  L  V  I  L  L  Y  D  L  C  S  L  L  F  V  L  R  F  L  S  F  L  E  S  T  I  F  I  C  S  R  T  W  R  K  Q  V  H  Q  L  Y  Q  V  L  S  C  W  S  G  Q  R  K  I  S  A  E  C  C  M  L  Y  I  V  S  V  T  L  N  V  P  S   : S  F  T  Q  N  V  L  G  *  N  C  *  G  R  E  I  F  Q  R  R  S  I  R  M  L  F  L  V  L  A  L  K  S  L  T  L  W  L  S  *  H  I  :  I  M  E  L  I  S  M  T  S  E  P  A  L  G  I  L  L  L  P  H  Q  M :   F  T  N  W  L  R  R  *  R  P  R  V  E  L  S  Q  G  S  L  V  L  S  R  V  D  L  V  L  L  L  L  S  K  I  L  M  A  T  Y  L  K  S  S  R  E  S  L  L  L  N  H  F  A  K  *  C  F  V  W  G  I  L  N  V  R  S  N  S  T  K  R :   H  L  G  C  K  W  *  R  K  L  I  D  Q  S  I  S :   I  P  L  L  *  W  D  M  L  Q  R  K  R  R  L  L  L  S  *  H  T  T  M  V  *  L  N  T  Q  R  E  M  H  T  H  R :   L  Q  *  A  L  M  M  S  T  K  A  R  R  L  S  I  L  L  S  K  S  S  E  E  R  *  L  D  S  Q  D  Q  F  L  D  L  T  P  R  *  L  H  F  W  I  Q  M  A  G  K  Q :   C  W  L  T  I  R  I  F  *  R  S  *  N  R  P  S  N  W  S  R  R  C  L  F  V  F  H  *  I  S  I  N  N  L  L  W  C  L  S  S  H  A  D  *  C  I  C  V  *  Y  R  N  Q  L  L  L  *  A  L  L  Q  T  F  S  C  V  T  M  *  I  *  H  L  *  L  A  E  Y  V  L  L  V  P  I  H  L  L  S  L  C  M  Y  E  I  I  Q  S  A  S  A  D  I  K  S  F  I  H  H </second_frame>
            <third_frame>   S  S  L  Y  I  F  F  F  F  N  L  G  F  Y  S  V  L  Q  F  L  M  A  L  *  R  V  S  S  K  C  F  E  *  F  F  I  L  E  D  L  *  G  F  C  D  K  N  *  *  Y  F  C  M  I  C  V  L  C  C  L  F  *  D  F  F  L  S  *  N  L  Q  F  L  F  V  V  E  H  G  G  S  K  C  T  S  C  T  K  Y  *  V  V  G  V  A  K  E  R  *  A  Q  N  V  A  C  C  I  S  C  R  *  P  *  T  Y  H  Q  :  V  L  H  R  M  F  W  D  E  I  V  E  A  E  R  Y  S  R  G  E  V  F  E  C  F  S  W  F  W  P  *  R  V  S  L  C  G  *  V  D  I  * :   L  W  S  *  *  V  *  H  R  N  R  L  W  A  F  C  Y  C  H  T  R   : C  L  Q  T  G  *  G  D  K  G  Q  G  W  N  C  H  K  G  A  W  S  C  Q  G  W  I  *  C  Y  C  F  C  Q  R  S  *  W  L  P  I  *  N  H  P  E  R  V  Y  S  *  T  T  L  P  S  D  A  S  C  G  G  S  *  T  C  D  Q  I  L  R  K   : G  T  W  D  A  S  G  E  E  S  *  *  T  R  A  *   : V  Y  H  C  Y  D  G  I  C  S  R  E  R  D  D  C  Y  *  V  D  I  Q  L  W  C  D  *  I  H  K  G  K  C  I  R  T   : D  C  N  R  H  *  *  C  L  Q  K  R  E  G  C  Q  S  C  Y  P  R  A  R  R  K  D  N  *  T  A  R  I  N  S  W  T  *  H  Q  D  N  F  I  S  G  S  R  W  L  E  N   : S  A  G  *  Q  *  G  F  S  E  G  A  R  I  V  Q  V  T  G  Q  E  D  A  C  S  Y  F  T  R  Y  Q  *  I  I  C  C  G  V  Y  L  H  M  Q  T  N  A  Y  V  S  S  T  V  I  N  Y  S  F  K  H  F  S  R  H  F  R  V  L  Q  C  E  F  D  I  S  N  L  L  S  M  S  C  W  F  L  F  T  F  *  V  C  V  C  M  K  L  S  N  Q  Q  V  Q  T  S  N  L  S  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78860" stop="78739"/>
                    <exon start="78662" stop="78538"/>
                    <exon start="76782" stop="76718"/>
                    <exon start="76641" stop="76429"/>
                    <exon start="75323" stop="75276"/>
                    <exon start="75163" stop="75056"/>
                    <exon start="74689" stop="74537"/>
                    <exon start="74427" stop="74377"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMAEASAPAVPSTELLEWPKKDKRRMLHAVYRVGDLERTIKFYTECFGMKLLRQRDIPEEKYSNAFLGFGPEESHFVVELTYNYGVDKYDIGTGFGHFAIATPDVYKLVEEIKAKGGTVTREPGPVKGGSSVIAFVKDPDGYLFEIIQRESTPEPLCQVMLRVGDLERAIKFYEKALGMQVVKKVDRPEHKYTIAMMGYAPEKETTVIELTYNYGVTEYTKGNAYAQIAIGTDDVYKSAKVVNLAIQELGGKITRQPGSIPGLNTKITSFLDPDGWKTVLVDNKDFLKELESSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="87692" PGL_stop="90798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87692" e_stop="87881"/>
            <exon e_start="88274" e_stop="88429"/>
            <exon e_start="88542" e_stop="88668"/>
            <exon e_start="89424" e_stop="90798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87692" e_stop="87881" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88274" e_stop="88429" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88542" e_stop="88668" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89424" e_stop="90798" e_length="1375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87692" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87697" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87698" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87698" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87699" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87699" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87699" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87699" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87700" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87703" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87703" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87703" stop="87881"/>
              <exon start="88274" stop="88398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87705" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87707" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87709" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87711" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="90785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87712" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87712" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87728" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87728" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87755" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87760" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87760" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87777" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87777" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87803" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="90447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87811" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89470" stop="90139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89666" stop="90491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89666" stop="90479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89718" stop="90581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89754" stop="90375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89800" stop="90705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89837" stop="90580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89863" stop="90637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89877" stop="90691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90016" stop="90568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90018" stop="90798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90030" stop="90798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90037" stop="90629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90158" stop="90313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90259" stop="90785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90359" stop="90785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90414" stop="90717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90424" stop="90717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTCACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG : TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG : AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG : TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTCATTCTTCTTCTAA</gDNA_template>
            <first_frame> H  S  R  T  S  S  H  H  H  L  L  L  F  F  T  S  N  F  F  A  G  T  N  C  S  L  S  L  *  N  *  S  L  F  V  V  E  M  A  L  T  F  T  S  S  S  A  I  H  G  S  L  S  S  S  S  S  S  Y  E  Q  P  K   : V  S  Q  L  G  T  F  Q  P  L  D  R  P  Q  L  L  S  S  T  V  L  N  S  R  R  R  S  A  V  K  P  L  Y  A  E  P  K  R  N  D  S  I  V  P  S  A  A  T  I  V  A  P   : E  V  G  E  S  V  E  A  E  D  F  E  K  L  A  K  E  L  Q  N  A  S  P  L  E  V  M  D  K  A  L  E  K  F  G  D  D  I  A  I  A  F  S :   G  A  E  D  V  A  L  I  E  Y  A  H  L  T  G  R  P  Y  R  V  F  S  L  D  T  G  R  L  N  P  E  T  Y  Q  L  F  D  T  V  E  K  H  Y  G  I  R  I  E  Y  M  F  P  D  S  V  E  V  Q  A  L  V  R  T  K  G  L  F  S  F  Y  E  D  G  H  Q  E  C  C  R  V  R  K  V  R  P  L  R  R  A  L  K  G  L  R  A  W  I  T  G  Q  R  K  D  Q  S  P  G  T  R  S  E  I  P  I  V  Q  V  D  P  S  F  E  G  L  D  G  G  A  G  S  L  V  K  W  N  P  V  A  N  V  D  G  K  D  I  W  N  F  L  R  A  M  N  V  P  V  N  S  L  H  S  Q  G  Y  V  S  I  G  C  E  P  C  T  R  P  V  L  P  G  Q  H  E  R  E  G  R  W  W  W  E  D  A  K  A  K  E  C  G  L  H  K  G  N  I  K  D  E  T  V  N  G  A  A  Q  T  N  G  T  A  T  V  A  D  I  F  D  T  K  D  I  V  T  L  S  K  P  G  V  E  N  L  V  K  L  E  D  R  R  E  P  W  L  V  V  L  Y  A  P  W  C  Q  F  C  Q  A  M  E  G  S  Y  V  E  L  A  E  K  L  A  G  S  G  V  K  V  G  K  F  R  A  D  G  D  Q  K  A  F  A  Q  E  E  L  Q  L  G  S  F  P  T  I  L  F  F  P  K  H  S  S  K  A  I  K  Y  P  S  E  K  R  D  V  D  S  L  L  A  F  V  N  A  L  R  *  K  A  N  G  V  F  D  Q  S  H  H  C  F  D  K  E  G  D  M  W  E  L  *  N  I  V  K  N  G  G  K  M  Q  H  L  P  L  C  A  L  *  V  V  S  S  C  I  V  F  L  V  Y  G  G  S  P  F  S  S  S  A  F  Y  F  P  *  K  S  Y  I  R  R  Q  I  S  F  Y  Y  F  P  I  P  S  F  S  N  R  E  V  Y  M  S  *  G  L  N  F  V  E  C  L  L  L  H  I  I  D  F  A  H  L  L  S  F  F  F  * </first_frame>
            <second_frame>  T  H  G  L  L  P  I  T  I  F  F  Y  F  S  Q  A  I  S  L  L  E  Q  I  V  L  C  L  C  E  I  N  L  S  L  L  *  K  W  L  *  L  S  L  L  H  L  Q  F  M  A  L  C  L  L  H  L  L  L  M  N  N  P  K  :  Y  P  N  W  V  P  F  S  H  W  I  G  L  N  Y  C  R  Q  L  F  *  I  L  G  G  V  R  Q  *  S  H  C  M  L  N  L  R  G  M  I  Q  *  F  R  Q  Q  L  P  S  W  L  L  :  R  *  E  R  V  L  R  Q  R  T  L  R  N  W  L  R  S  F  K  M  L  P  L  L  R  L  W  T  K  H  L  R  N  L  E  M  T  L  L  L  L  S   : V  V  L  K  M  L  L  *  *  S  T  H  I  *  L  D  D  H  T  E  Y  S  A  L  I  L  G  G  *  T  R  R  H  T  N  Y  L  T  Q  W  R  S  T  M  A  F  A  L  N  T  C  S  L  I  Q  L  K  F  R  R  W  L  G  P  K  G  F  S  L  S  M  R  M  A  T  K  S  V  A  V  *  G  R  L  G  L  *  G  E  L  *  R  A  Y  A  P  G  S  Q  A  S  V  K  I  S  P  L  E  L  D  Q  K  S  P  L  F  R  W  T  L  L  L  R  G  W  M  A  V  L  V  A  W  *  S  G  T  L  W  L  M  W  T  E  K  I  F  G  T  S  C  V  P  *  M  C  L  *  T  H  C  I  H  K  D  M  Y  P  L  D  A  N  L  A  Q  G  Q  F  Y  Q  G  N  T  R  E  R  E  D  G  G  G  K  M  P  R  P  R  S  V  A  C  T  R  A  T  S  R  M  K  L  *  M  A  L  P  K  Q  M  V  L  L  P  L  L  I  F  L  I  P  R  T  L  L  P  *  V  S  L  E  L  R  T  *  *  N  W  K  T  E  E  S  L  G  S  L  F  F  M  H  L  G  A  N  F  A  R  Q  W  K  D  P  M  L  N  W  L  R  S  W  L  V  L  V  *  K  *  G  N  S  G  Q  M  V  T  R  K  H  L  H  K  K  N  C  S  L  A  A  S  L  Q  Y  S  S  S  Q  S  T  L  Q  R  P  L  S  T  L  Q  R  R  G  T  *  T  P  C  W  L  L  *  M  L  S  D  E  K  Q  M  V  F  L  I  N  H  T  I  V  L  T  K  R  E  I  C  G  S  C  R  I  *  *  R  M  V  A  R  C  S  T  F  L  F  V  L  Y  K  L  F  L  L  V  *  C  F  *  Y  M  V  A  L  P  S  P  P  L  H  F  I  F  L  R  N  P  T  *  E  D  K  *  V  F  I  T  F  P  S  H  P  S  Q  I  E  K  Y  I  C  L  E  G  S  I  L  L  S  V  Y  F  S  I  L  *  I  L  P  I  F  S  H  S  S  S   </second_frame>
            <third_frame>   L  T  D  F  F  P  S  P  S  S  S  I  F  H  K  Q  F  L  C  W  N  K  L  F  F  V  S  V  K  L  I  S  L  C  C  R  N  G  F  D  F  H  F  F  I  C  N  S  W  L  F  V  F  F  I  F  F  L  *  T  T  Q  S :   I  P  I  G  Y  L  S  A  I  G  *  A  S  T  I  V  V  N  C  F  E  F  S  E  A  F  G  S  E  A  I  V  C  *  T  *  E  E  *  F  N  S  S  V  S  S  Y  H  R  G  S  * :   G  R  R  E  C  *  G  R  G  L  *  E  I  G  *  G  A  S  K  C  F  P  S  *  G  Y  G  Q  S  T  *  E  I  W  R  *  H  C  Y  C  F  Q  :  W  C  *  R  C  C  F  D  R  V  R  T  F  N  W  T  T  I  Q  S  I  Q  P  *  Y  W  E  V  E  P  G  D  I  P  I  I  *  H  S  G  E  A  L  W  H  S  H  *  I  H  V  P  *  F  S  *  S  S  G  V  G  *  D  Q  R  A  F  L  F  L  *  G  W  P  P  R  V  L  P  C  K  E  G  *  A  F  E  E  S  S  K  G  L  T  R  L  D  H  R  P  A  *  R  S  V  P  W  N  S  I  R  N  P  H  C  S  G  G  P  F  F  *  G  V  G  W  R  C  W  *  L  G  E  V  E  P  C  G  *  C  G  R  K  R  Y  L  E  L  P  A  C  H  E  C  A  C  E  L  I  A  F  T  R  I  C  I  H  W  M  R  T  L  H  K  A  S  S  T  R  A  T  R  E  R  G  K  M  V  V  G  R  C  Q  G  Q  G  V  W  L  A  Q  G  Q  H  Q  G  *  N  C  K  W  R  C  P  N  K  W  Y  C  Y  R  C  *  Y  F  *  Y  Q  G  H  C  Y  L  E  *  A  W  S  *  E  P  S  K  I  G  R  P  K  R  A  L  A  R  C  S  L  C  T  L  V  P  I  L  P  G  N  G  R  I  L  C  *  I  G  *  E  V  G  W  F  W  C  E  S  R  E  I  Q  G  R  W  *  P  E  S  I  C  T  R  R  I  A  A  W  Q  L  P  Y  N  T  L  L  P  K  A  L  F  K  G  H  *  V  P  F  R  E  E  G  R  R  L  L  A  G  F  C  E  C  S  Q  M  K  S  K  W  C  F  *  S  I  T  P  L  F  *  Q  R  G  R  Y  V  G  V  V  E  Y  S  E  E  W  W  Q  D  A  A  P  S  S  L  C  F  I  S  C  F  F  L  Y  S  V  F  S  I  W  W  L  S  L  L  L  L  C  I  L  F  S  L  E  I  L  H  K  K  T  N  K  F  L  L  L  S  H  P  I  L  L  K  *  R  S  I  Y  V  L  R  A  Q  F  C  *  V  F  T  S  P  Y  Y  R  F  C  P  S  S  L  I  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87785" stop="87881"/>
                    <exon start="88274" stop="88429"/>
                    <exon start="88542" stop="88668"/>
                    <exon start="89424" stop="90447"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1401</number_coding_nucleotides>
                  <number_encoded_amino_acids>467</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFVVEMALTFTSSSAIHGSLSSSSSSYEQPKVSQLGTFQPLDRPQLLSSTVLNSRRRSAVKPLYAEPKRNDSIVPSAATIVAPEVGESVEAEDFEKLAKELQNASPLEVMDKALEKFGDDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYQLFDTVEKHYGIRIEYMFPDSVEVQALVRTKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPIVQVDPSFEGLDGGAGSLVKWNPVANVDGKDIWNFLRAMNVPVNSLHSQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKDETVNGAAQTNGTATVADIFDTKDIVTLSKPGVENLVKLEDRREPWLVVLYAPWCQFCQAMEGSYVELAEKLAGSGVKVGKFRADGDQKAFAQEELQLGSFPTILFFPKHSSKAIKYPSEKRDVDSLLAFVNALR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90489" stop="90707"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRGRYVGVVEYSEEWWQDAAPSSLCFISCFFLYSVFSIWWLSLLLLCILFSLEILHKKTNKFLLLSHPILLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87698" e_stop="87881"/>
            <exon e_start="88274" e_stop="88429"/>
            <exon e_start="88542" e_stop="88668"/>
            <exon e_start="89424" e_stop="89465"/>
            <exon e_start="90048" e_stop="90785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87698" e_stop="87881" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88274" e_stop="88429" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88542" e_stop="88668" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89424" e_stop="89465" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89466" i_stop="90047" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="90048" e_stop="90785" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87698" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89465"/>
              <exon start="90048" stop="90301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87698" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87699" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87703" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87703" stop="87881"/>
              <exon start="88274" stop="88398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87707" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90158" stop="90313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90259" stop="90785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90359" stop="90785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90414" stop="90717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90424" stop="90717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG : TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG : AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG : TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAAC : TGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTC</gDNA_template>
            <first_frame> R  T  S  S  H  H  H  L  L  L  F  F  T  S  N  F  F  A  G  T  N  C  S  L  S  L  *  N  *  S  L  F  V  V  E  M  A  L  T  F  T  S  S  S  A  I  H  G  S  L  S  S  S  S  S  S  Y  E  Q  P  K   : V  S  Q  L  G  T  F  Q  P  L  D  R  P  Q  L  L  S  S  T  V  L  N  S  R  R  R  S  A  V  K  P  L  Y  A  E  P  K  R  N  D  S  I  V  P  S  A  A  T  I  V  A  P   : E  V  G  E  S  V  E  A  E  D  F  E  K  L  A  K  E  L  Q  N  A  S  P  L  E  V  M  D  K  A  L  E  K  F  G  D  D  I  A  I  A  F  S :   G  A  E  D  V  A  L  I  E  Y  A  H  L  T :   V  N  G  A  A  Q  T  N  G  T  A  T  V  A  D  I  F  D  T  K  D  I  V  T  L  S  K  P  G  V  E  N  L  V  K  L  E  D  R  R  E  P  W  L  V  V  L  Y  A  P  W  C  Q  F  C  Q  A  M  E  G  S  Y  V  E  L  A  E  K  L  A  G  S  G  V  K  V  G  K  F  R  A  D  G  D  Q  K  A  F  A  Q  E  E  L  Q  L  G  S  F  P  T  I  L  F  F  P  K  H  S  S  K  A  I  K  Y  P  S  E  K  R  D  V  D  S  L  L  A  F  V  N  A  L  R  *  K  A  N  G  V  F  D  Q  S  H  H  C  F  D  K  E  G  D  M  W  E  L  *  N  I  V  K  N  G  G  K  M  Q  H  L  P  L  C  A  L  *  V  V  S  S  C  I  V  F  L  V  Y  G  G  S  P  F  S  S  S  A  F  Y  F  P  *  K  S  Y  I  R  R  Q  I  S  F  Y  Y  F  P  I  P  S  F  S  N  R  E  V  Y  M  S  *  G  L  N  F  V  E  C  L  L  L  H  I  I  D  F  A  H  L  L   </first_frame>
            <second_frame>  G  L  L  P  I  T  I  F  F  Y  F  S  Q  A  I  S  L  L  E  Q  I  V  L  C  L  C  E  I  N  L  S  L  L  *  K  W  L  *  L  S  L  L  H  L  Q  F  M  A  L  C  L  L  H  L  L  L  M  N  N  P  K  :  Y  P  N  W  V  P  F  S  H  W  I  G  L  N  Y  C  R  Q  L  F  *  I  L  G  G  V  R  Q  *  S  H  C  M  L  N  L  R  G  M  I  Q  *  F  R  Q  Q  L  P  S  W  L  L  :  R  *  E  R  V  L  R  Q  R  T  L  R  N  W  L  R  S  F  K  M  L  P  L  L  R  L  W  T  K  H  L  R  N  L  E  M  T  L  L  L  L  S   : V  V  L  K  M  L  L  *  *  S  T  H  I  *   : L  *  M  A  L  P  K  Q  M  V  L  L  P  L  L  I  F  L  I  P  R  T  L  L  P  *  V  S  L  E  L  R  T  *  *  N  W  K  T  E  E  S  L  G  S  L  F  F  M  H  L  G  A  N  F  A  R  Q  W  K  D  P  M  L  N  W  L  R  S  W  L  V  L  V  *  K  *  G  N  S  G  Q  M  V  T  R  K  H  L  H  K  K  N  C  S  L  A  A  S  L  Q  Y  S  S  S  Q  S  T  L  Q  R  P  L  S  T  L  Q  R  R  G  T  *  T  P  C  W  L  L  *  M  L  S  D  E  K  Q  M  V  F  L  I  N  H  T  I  V  L  T  K  R  E  I  C  G  S  C  R  I  *  *  R  M  V  A  R  C  S  T  F  L  F  V  L  Y  K  L  F  L  L  V  *  C  F  *  Y  M  V  A  L  P  S  P  P  L  H  F  I  F  L  R  N  P  T  *  E  D  K  *  V  F  I  T  F  P  S  H  P  S  Q  I  E  K  Y  I  C  L  E  G  S  I  L  L  S  V  Y  F  S  I  L  *  I  L  P  I  F  S  </second_frame>
            <third_frame>   D  F  F  P  S  P  S  S  S  I  F  H  K  Q  F  L  C  W  N  K  L  F  F  V  S  V  K  L  I  S  L  C  C  R  N  G  F  D  F  H  F  F  I  C  N  S  W  L  F  V  F  F  I  F  F  L  *  T  T  Q  S :   I  P  I  G  Y  L  S  A  I  G  *  A  S  T  I  V  V  N  C  F  E  F  S  E  A  F  G  S  E  A  I  V  C  *  T  *  E  E  *  F  N  S  S  V  S  S  Y  H  R  G  S  * :   G  R  R  E  C  *  G  R  G  L  *  E  I  G  *  G  A  S  K  C  F  P  S  *  G  Y  G  Q  S  T  *  E  I  W  R  *  H  C  Y  C  F  Q  :  W  C  *  R  C  C  F  D  R  V  R  T  F  N  :  C  K  W  R  C  P  N  K  W  Y  C  Y  R  C  *  Y  F  *  Y  Q  G  H  C  Y  L  E  *  A  W  S  *  E  P  S  K  I  G  R  P  K  R  A  L  A  R  C  S  L  C  T  L  V  P  I  L  P  G  N  G  R  I  L  C  *  I  G  *  E  V  G  W  F  W  C  E  S  R  E  I  Q  G  R  W  *  P  E  S  I  C  T  R  R  I  A  A  W  Q  L  P  Y  N  T  L  L  P  K  A  L  F  K  G  H  *  V  P  F  R  E  E  G  R  R  L  L  A  G  F  C  E  C  S  Q  M  K  S  K  W  C  F  *  S  I  T  P  L  F  *  Q  R  G  R  Y  V  G  V  V  E  Y  S  E  E  W  W  Q  D  A  A  P  S  S  L  C  F  I  S  C  F  F  L  Y  S  V  F  S  I  W  W  L  S  L  L  L  L  C  I  L  F  S  L  E  I  L  H  K  K  T  N  K  F  L  L  L  S  H  P  I  L  L  K  *  R  S  I  Y  V  L  R  A  Q  F  C  *  V  F  T  S  P  Y  Y  R  F  C  P  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87785" stop="87881"/>
                    <exon start="88274" stop="88429"/>
                    <exon start="88542" stop="88668"/>
                    <exon start="89424" stop="89465"/>
                    <exon start="90048" stop="90447"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFVVEMALTFTSSSAIHGSLSSSSSSYEQPKVSQLGTFQPLDRPQLLSSTVLNSRRRSAVKPLYAEPKRNDSIVPSAATIVAPEVGESVEAEDFEKLAKELQNASPLEVMDKALEKFGDDIAIAFSGAEDVALIEYAHLTVNGAAQTNGTATVADIFDTKDIVTLSKPGVENLVKLEDRREPWLVVLYAPWCQFCQAMEGSYVELAEKLAGSGVKVGKFRADGDQKAFAQEELQLGSFPTILFFPKHSSKAIKYPSEKRDVDSLLAFVNALR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90489" stop="90707"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRGRYVGVVEYSEEWWQDAAPSSLCFISCFFLYSVFSIWWLSLLLLCILFSLEILHKKTNKFLLLSHPILLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="87698" e_stop="87881"/>
            <exon e_start="88274" e_stop="88429"/>
            <exon e_start="88542" e_stop="88779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="87698" e_stop="87881" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88274" e_stop="88429" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88542" e_stop="88779" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87698" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87699" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87703" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87703" stop="87881"/>
              <exon start="88274" stop="88398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87707" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87746" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG : TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG : AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAA</gDNA_template>
            <first_frame> R  T  S  S  H  H  H  L  L  L  F  F  T  S  N  F  F  A  G  T  N  C  S  L  S  L  *  N  *  S  L  F  V  V  E  M  A  L  T  F  T  S  S  S  A  I  H  G  S  L  S  S  S  S  S  S  Y  E  Q  P  K   : V  S  Q  L  G  T  F  Q  P  L  D  R  P  Q  L  L  S  S  T  V  L  N  S  R  R  R  S  A  V  K  P  L  Y  A  E  P  K  R  N  D  S  I  V  P  S  A  A  T  I  V  A  P   : E  V  G  E  S  V  E  A  E  D  F  E  K  L  A  K  E  L  Q  N  A  S  P  L  E  V  M  D  K  A  L  E  K  F  G  D  D  I  A  I  A  F  R  Y  G  F  L  N  L  A  L  V  *  A  *  F  L  F  K  *  F  *  V  V  L  Y  G  *  C  S  L  *  C  A  Q  *  M  L  K   </first_frame>
            <second_frame>  G  L  L  P  I  T  I  F  F  Y  F  S  Q  A  I  S  L  L  E  Q  I  V  L  C  L  C  E  I  N  L  S  L  L  *  K  W  L  *  L  S  L  L  H  L  Q  F  M  A  L  C  L  L  H  L  L  L  M  N  N  P  K  :  Y  P  N  W  V  P  F  S  H  W  I  G  L  N  Y  C  R  Q  L  F  *  I  L  G  G  V  R  Q  *  S  H  C  M  L  N  L  R  G  M  I  Q  *  F  R  Q  Q  L  P  S  W  L  L  :  R  *  E  R  V  L  R  Q  R  T  L  R  N  W  L  R  S  F  K  M  L  P  L  L  R  L  W  T  K  H  L  R  N  L  E  M  T  L  L  L  L  S  G  T  V  F  *  I  L  L  *  C  E  P  S  F  C  S  N  D  F  R  L  Y  Y  M  D  N  V  L  Y  D  V  H  N  K  C  *  K  </second_frame>
            <third_frame>   D  F  F  P  S  P  S  S  S  I  F  H  K  Q  F  L  C  W  N  K  L  F  F  V  S  V  K  L  I  S  L  C  C  R  N  G  F  D  F  H  F  F  I  C  N  S  W  L  F  V  F  F  I  F  F  L  *  T  T  Q  S :   I  P  I  G  Y  L  S  A  I  G  *  A  S  T  I  V  V  N  C  F  E  F  S  E  A  F  G  S  E  A  I  V  C  *  T  *  E  E  *  F  N  S  S  V  S  S  Y  H  R  G  S  * :   G  R  R  E  C  *  G  R  G  L  *  E  I  G  *  G  A  S  K  C  F  P  S  *  G  Y  G  Q  S  T  *  E  I  W  R  *  H  C  Y  C  F  Q  V  R  F  F  K  S  C  F  S  V  S  L  V  S  V  Q  M  I  L  G  C  I  I  W  I  M  F  F  M  M  C  T  I  N  V  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87785" stop="87881"/>
                    <exon start="88274" stop="88429"/>
                    <exon start="88542" stop="88699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFVVEMALTFTSSSAIHGSLSSSSSSYEQPKVSQLGTFQPLDRPQLLSSTVLNSRRRSAVKPLYAEPKRNDSIVPSAATIVAPEVGESVEAEDFEKLAKELQNASPLEVMDKALEKFGDDIAIAFRYGFLNLALV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="91641" PGL_stop="95732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91641" e_stop="91714"/>
            <exon e_start="91893" e_stop="92523"/>
            <exon e_start="92616" e_stop="93612"/>
            <exon e_start="95520" e_stop="95732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.716" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.998"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91641" e_stop="91714" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.941">
            <gDNA_intron_boundary i_start="91715" i_stop="91892" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91893" e_stop="92523" e_length="631"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.716">
            <gDNA_intron_boundary i_start="92524" i_stop="92615" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="92616" e_stop="93612" e_length="997"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="93613" i_stop="95519" i_length="1907"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="95520" e_stop="95732" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91641" stop="91714"/>
              <exon start="91893" stop="92438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91649" stop="91714"/>
              <exon start="91893" stop="92462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91650" stop="91714"/>
              <exon start="91893" stop="92311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91976" stop="92516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92271" stop="92523"/>
              <exon start="92616" stop="92894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92499" stop="92523"/>
              <exon start="92616" stop="93223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92768" stop="93294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92768" stop="93176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92788" stop="93299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92987" stop="93612"/>
              <exon start="95520" stop="95702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93197" stop="93612"/>
              <exon start="95520" stop="95732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGTTTCCCAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAG : ATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACCGATTTATGTTCAGAGCAAGGGTTGCCCATTCTGTTTGAAATTTTGCGTACTGCATCAGCCG : TTGGTCTTAAAGAAGTTTGGTTGAAGTTGTTACTCTCAAAACTTTGCATTGAGGGCTCCCACATCTCATCAATTTTCTTCAAATTACATTCATATCCTTCCGTTGAGGACAATGGTGTTGTTACACATGTAGCTGATCAGTTTGTTATTGAGCAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATGAAGATAATCCTTTCTTAAGGGAGTGGGGAATCTGGTGTGTGCGAAACCTATTGGAAGGGAATGCAGAAAACCAAGGGGCTATTACTGATTTGGAGCTTCAAGGAACCGTAGATGTTCCAGAACTTGTTAGACTTGGGCTTCGAGTAGAAGTTGATCCCGTAACTCGACGCACAAAGCTTGTGAATTCCTCATGATATGTCAAGTGATGAAAGTTAAAAATTGCAACTTCTGGAGTTGACAAACTGATTGTTCAGGAAACTTGTTTCTTGGTCTGCTTAAGATTGATTCACATGTTCTGGAATGTCCATAAGAG : AGTACATACATTACAGACAATAAAACAGATGGATTTTGATACCAAGGAATGAAGAGAGTGTTGAAGTCATGGACGCTCAGAGTACATTACAATTTACAAACCTATAATTTCTTCTTTTTGAAAAATTGAAAACTTAAGTGGTATAAATAAAGGCCACTGTAATTTATTTCTGAAATAGCTTTAATAGAAAAGCTGTTGTGTATTTGTCTTAGG</gDNA_template>
            <first_frame> *  V  S  Q  N  F  L  L  L  S  L  F  V  L  V  S  S  A  S  I  F  F  L  L  R :   *  W  M  I  R  L  L  L  W  M  I  K  L  Y  Q  S  L  Q  S  Q  K  M  S  P  K  N  Y  Y  L  C  Q  T  H  L  L  *  K  R  H  S  T  S  *  Y  N  F  P  R  R  G  V  D  G  *  I  C  R  P  R  M  L  S  P  L  S  S  I  S  A  S  L  C  H  L  S  L  T  V  T  S  F  Y  C  L  L  R  Y  S  E  I  C  V  L  G  R  *  E  I  R  M  A  F  F  N  K  E  E  L  K  L  S  W  M  L  L  C  L  *  D  F  L  L  I  L  I  V  *  L  F  E  W  G  C  N  F  *  E  T  T  Q  W  V  E  E  N  V  N  V  M  C  G  T  N  C  F  L  I  S  S  *  R  L  L  E  L  E  T  R  K  Y  V  I  L  Y  V  W  S  F  T  L  A  V  M  V  R  M  D  C  L  P  I  Y  V  Q  S  K  G  C  P  F  C  L  K  F  C  V  L  H  Q  P  :  L  V  L  K  K  F  G  *  S  C  Y  S  Q  N  F  A  L  R  A  P  T  S  H  Q  F  S  S  N  Y  I  H  I  L  P  L  R  T  M  V  L  L  H  M  *  L  I  S  L  L  L  S  S  L  I  S  *  V  Y  F  Q  K  S  *  M  N  E  *  S  I  L  L  F  L  M  I  L  L  E  V  S  L  G  Y  *  R  V  L  L  G  L  L  I  F  Q  *  E  G  K  V  I  F  Q  W  G  L  L  L  L  M  F  *  D  T  L  S  P  S  *  E  I  F  A  L  L  I  T  Y  Q  A  L  R  K  K  V  Q  R  M  L  W  T  Y  L  F  P  L  G  L  L  N  F  F  *  T  C  F  G  I  L  N  L  Q  R  Q  L  G  T  Q  *  S  R  I  R  S  R  R  G  Q  Y  L  L  H  L  G  V  V  H  T  K  V  S  G  E  I  L  L  P  S  L  E  I  V  L  I  G  E  G  M  S  K  M  R  L  G  I  K  M  G  S  F  Y  C  Y  N  S  V  L  *  M  K  I  I  L  S  *  G  S  G  E  S  G  V  C  E  T  Y  W  K  G  M  Q  K  T  K  G  L  L  L  I  W  S  F  K  E  P  *  M  F  Q  N  L  L  D  L  G  F  E  *  K  L  I  P  *  L  D  A  Q  S  L  *  I  P  H  D  M  S  S  D  E  S  *  K  L  Q  L  L  E  L  T  N  *  L  F  R  K  L  V  S  W  S  A  *  D  *  F  T  C  S  G  M  S  I  R   : E  Y  I  H  Y  R  Q  *  N  R  W  I  L  I  P  R  N  E  E  S  V  E  V  M  D  A  Q  S  T  L  Q  F  T  N  L  *  F  L  L  F  E  K  L  K  T  *  V  V  *  I  K  A  T  V  I  Y  F  *  N  S  F  N  R  K  A  V  V  Y  L  S  *  </first_frame>
            <second_frame>  R  F  P  K  I  S  F  S  F  L  S  L  F  W  C  R  L  R  Q  F  S  S  S  S   : D  N  G  *  *  G  C  Y  Y  G  *  S  N  C  I  R  A  Y  N  P  R  K  C  R  Q  R  I  I  T  C  V  K  L  I  F  F  R  N  G  T  R  Q  A  D  T  T  F  Q  G  G  G  W  T  V  R  S  V  V  Q  E  C  C  H  H  C  P  P  S  L  P  V  S  V  I  Y  L  L  P  *  P  P  F  I  V  S  *  G  T  Q  K  S  V  C  W  G  D  K  K  S  E  W  L  S  S  T  K  R  S  *  N  C  L  G  C  Y  Y  V  C  R  T  F  S  *  S  *  L  Y  D  Y  S  S  G  A  A  T  S  R  K  L  L  S  G  W  R  R  T  S  M  *  C  V  V  P  I  V  S  S  *  V  L  E  D  C  *  S  *  K  P  G  N  M  *  S  F  M  Y  G  H  L  H  L  L  *  W  Y  G  W  T  A  Y  R  F  M  F  R  A  R  V  A  H  S  V  *  N  F  A  Y  C  I  S  R :   W  S  *  R  S  L  V  E  V  V  T  L  K  T  L  H  *  G  L  P  H  L  I  N  F  L  Q  I  T  F  I  S  F  R  *  G  Q  W  C  C  Y  T  C  S  *  S  V  C  Y  *  A  A  L  S  L  E  Y  T  F  R  N  L  K  *  T  S  R  A  Y  C  C  F  S  *  F  C  S  K  Y  L  W  D  I  E  E  C  F  W  G  C  *  F  F  N  K  R  E  K  *  S  S  S  G  V  C  S  Y  *  C  S  R  I  L  S  H  P  H  E  R  Y  L  R  F  *  S  L  I  K  L  *  G  R  K  F  K  G  C  C  G  R  T  C  F  L  W  A  Y  *  I  S  F  E  L  A  S  G  S  *  T  S  N  D  N  *  E  R  N  E  A  G  S  D  Q  G  G  D  N  T  F  F  I  *  V  L  S  I  P  R  F  P  E  R  Y  C  C  H  P  W  K  L  C  L  *  E  K  A  C  P  R  *  D  *  G  *  K  W  D  P  F  T  A  T  T  V  C  Y  R  *  R  *  S  F  L  K  G  V  G  N  L  V  C  A  K  P  I  G  R  E  C  R  K  P  R  G  Y  Y  *  F  G  A  S  R  N  R  R  C  S  R  T  C  *  T  W  A  S  S  R  S  *  S  R  N  S  T  H  K  A  C  E  F  L  M  I  C  Q  V  M  K  V  K  N  C  N  F  W  S  *  Q  T  D  C  S  G  N  L  F  L  G  L  L  K  I  D  S  H  V  L  E  C  P  *  E  :  S  T  Y  I  T  D  N  K  T  D  G  F  *  Y  Q  G  M  K  R  V  L  K  S  W  T  L  R  V  H  Y  N  L  Q  T  Y  N  F  F  F  L  K  N  *  K  L  K  W  Y  K  *  R  P  L  *  F  I  S  E  I  A  L  I  E  K  L  L  C  I  C  L  R </second_frame>
            <third_frame>   G  F  P  K  F  P  S  P  F  S  L  C  F  G  V  V  C  V  N  F  L  P  P  Q  :  I  M  D  D  K  V  V  T  M  D  D  Q  I  V  S  E  L  T  I  P  E  N  V  A  K  E  L  L  L  V  S  N  S  S  S  L  E  T  A  L  D  K  L  I  Q  L  S  K  E  G  G  G  R  L  D  L  S  S  K  N  V  V  T  T  V  L  H  L  C  Q  S  L  S  S  I  S  Y  R  N  L  L  L  L  S  L  K  V  L  R  N  L  C  A  G  E  I  R  N  Q  N  G  F  L  Q  Q  R  G  V  E  I  V  L  D  V  I  M  S  V  G  L  S  P  D  P  D  C  M  I  I  R  V  G  L  Q  L  L  G  N  Y  S  V  G  G  G  E  R  Q  C  D  V  W  Y  Q  L  F  P  H  K  F  L  K  I  A  R  V  R  N  Q  E  I  C  D  P  L  C  M  V  I  Y  T  C  C  D  G  T  D  G  L  L  T  D  L  C  S  E  Q  G  L  P  I  L  F  E  I  L  R  T  A  S  A   : V  G  L  K  E  V  W  L  K  L  L  L  S  K  L  C  I  E  G  S  H  I  S  S  I  F  F  K  L  H  S  Y  P  S  V  E  D  N  G  V  V  T  H  V  A  D  Q  F  V  I  E  Q  P  Y  L  L  S  I  L  S  E  I  L  N  E  R  V  E  H  I  V  V  S  H  D  F  A  R  S  I  F  G  I  L  K  S  A  S  G  V  V  D  F  S  I  R  G  K  S  D  L  P  V  G  S  A  P  I  D  V  L  G  Y  S  L  T  L  M  R  D  I  C  A  S  D  H  L  S  S  S  K  E  E  S  S  K  D  V  V  D  V  L  V  S  S  G  L  I  E  F  L  L  N  L  L  R  D  L  E  P  P  T  T  I  R  N  A  M  K  P  D  Q  I  K  E  G  T  I  P  S  S  F  R  C  C  P  Y  Q  G  F  R  R  D  I  V  A  I  L  G  N  C  A  Y  R  R  R  H  V  Q  D  E  I  R  D  K  N  G  I  L  L  L  L  Q  Q  C  V  I  D  E  D  N  P  F  L  R  E  W  G  I  W  C  V  R  N  L  L  E  G  N  A  E  N  Q  G  A  I  T  D  L  E  L  Q  G  T  V  D  V  P  E  L  V  R  L  G  L  R  V  E  V  D  P  V  T  R  R  T  K  L  V  N  S  S  *  Y  V  K  *  *  K  L  K  I  A  T  S  G  V  D  K  L  I  V  Q  E  T  C  F  L  V  C  L  R  L  I  H  M  F  W  N  V  H  K  R :   V  H  T  L  Q  T  I  K  Q  M  D  F  D  T  K  E  *  R  E  C  *  S  H  G  R  S  E  Y  I  T  I  Y  K  P  I  I  S  S  F  *  K  I  E  N  L  S  G  I  N  K  G  H  C  N  L  F  L  K  *  L  *  *  K  S  C  C  V  F  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91643" stop="91714"/>
                    <exon start="91893" stop="92523"/>
                    <exon start="92616" stop="93493"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1578</number_coding_nucleotides>
                  <number_encoded_amino_acids>526</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFPKFPSPFSLCFGVVCVNFLPPQIMDDKVVTMDDQIVSELTIPENVAKELLLVSNSSSLETALDKLIQLSKEGGGRLDLSSKNVVTTVLHLCQSLSSISYRNLLLLSLKVLRNLCAGEIRNQNGFLQQRGVEIVLDVIMSVGLSPDPDCMIIRVGLQLLGNYSVGGGERQCDVWYQLFPHKFLKIARVRNQEICDPLCMVIYTCCDGTDGLLTDLCSEQGLPILFEILRTASAVGLKEVWLKLLLSKLCIEGSHISSIFFKLHSYPSVEDNGVVTHVADQFVIEQPYLLSILSEILNERVEHIVVSHDFARSIFGILKSASGVVDFSIRGKSDLPVGSAPIDVLGYSLTLMRDICASDHLSSSKEESSKDVVDVLVSSGLIEFLLNLLRDLEPPTTIRNAMKPDQIKEGTIPSSFRCCPYQGFRRDIVAILGNCAYRRRHVQDEIRDKNGILLLLQQCVIDEDNPFLREWGIWCVRNLLEGNAENQGAITDLELQGTVDVPELVRLGLRVEVDPVTRRTKLVNSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="96657" PGL_stop="99712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96657" e_stop="96799"/>
            <exon e_start="96907" e_stop="98187"/>
            <exon e_start="99163" e_stop="99190"/>
            <exon e_start="99352" e_stop="99712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.993"/>
          <exon-intron don_prob="0.988" acc_prob="0.671" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96657" e_stop="96799" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96800" i_stop="96906" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="96907" e_stop="98187" e_length="1281"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="98188" i_stop="99162" i_length="975"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99163" e_stop="99190" e_length="28"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.671">
            <gDNA_intron_boundary i_start="99191" i_stop="99351" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99352" e_stop="99712" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96657" stop="96799"/>
              <exon start="96907" stop="98187"/>
              <exon start="99163" stop="99190"/>
              <exon start="99352" stop="99712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96658" stop="96799"/>
              <exon start="96907" stop="97363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96658" stop="96799"/>
              <exon start="96907" stop="97155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97488" stop="98187"/>
              <exon start="99163" stop="99190"/>
              <exon start="99352" stop="99527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97488" stop="98187"/>
              <exon start="99163" stop="99190"/>
              <exon start="99352" stop="99469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98033" stop="98187"/>
              <exon start="99163" stop="99190"/>
              <exon start="99352" stop="99712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTCCTTTCTTCTTCTTCTTTGTCCTCTTCTCTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAG : AGATAAAAGTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCTGGATTGGGCGCAATGTGGCAGCTTATTACCCTGAAACTCTTATCACTGCAATAGCAGTTGGGGATGAAATCTTGACCACTGTGCCAAGTTCAGCTCCTTTGCTTATGCCAGCAATTGAGTCACTTTATAGTGCTTTAGTGGCTGCAAATTTGCATAACCAAATCAAGATTTCAACTCCAAATGCTGCTTCCATTATTCTTGACCCTTTTCCACCTTCCCAAGCTTTTTTCAATCAGTCCATGAGCTCTGTCCTTTCTAAGTTATTGCAGTTCTGTTCAAGGACACAGTCACCTCTGATGATGAATTTGTACCCTTATTATGTGTTTATGCAGAATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATTGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAA : GTCACGGGAGTTGTATATTTCCAGGAAG : CAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAATTAGTTTTTTAGTTGAAATCTTTTTATTTGTTCAATAAAGAAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGCTTATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGGAA</gDNA_template>
            <first_frame> L  N  L  K  Q  K  M  I  Q  E  N  I  K  L  L  F  N  G  K  Y  *  K  V  P  S  F  L  L  L  L  C  P  L  L  L  L  L  L  L  H  F  K  F  K  F  C  T  R :   D  K  S  A  A  R  Q  R  *  A  I  C  G  S  E  H  R  Y  R  C  F  Q  F  A  F  T  C  R  L  G  C  F  F  A  I  T  E  D  N  S  Y  K  A  L  *  C  *  P  *  Y  T  Q  S  T  S  *  D  Q  N  K  S  D  Y  *  C  A  *  Q  P  N  S  C  Y  W  V  L  *  Y  Y  C  S  C  L  D  W  A  Q  C  G  S  L  L  P  *  N  S  Y  H  C  N  S  S  W  G  *  N  L  D  H  C  A  K  F  S  S  F  A  Y  A  S  N  *  V  T  L  *  C  F  S  G  C  K  F  A  *  P  N  Q  D  F  N  S  K  C  C  F  H  Y  S  *  P  F  S  T  F  P  S  F  F  Q  S  V  H  E  L  C  P  F  *  V  I  A  V  L  F  K  D  T  V  T  S  D  D  E  F  V  P  L  L  C  V  Y  A  E  *  R  G  C  S  Y  R  Q  L  S  F  Q  A  L  D  T  F  *  R  D  G  G  S  *  Y  F  A  S  L  H  Q  C  A  *  C  N  D  *  F  S  L  F  F  H  E  K  S  Q  Y  Y  R  C  A  S  S  C  Y  R  V  R  M  A  F  K  G  G  F  *  R  A  L  C  Y  N  *  Q  C  *  Y  L  *  L  E  F  N  *  A  Y  N  *  S  Q  W  Y  T  I  A  S  G  D  Y  F  *  C  I  H  I  *  V  I  Q  *  G  F  E  V  T  P  I  V  R  G  K  L  G  A  I  P  W  E  F  N  A  C  L  P  A  S  C  V  W  K  W  Y  I  L  G  *  *  H  H  *  P  N  V  L  H  S  N  G  W  G  *  *  E  N  N  A  G  S  F  R  L  G  L  W  T  G  E  G  K  L  L  *  N  S  A  R  R  E  L  L  S  A  *  *  C  E  E  P  C  F  I  C  I  *  *  L  L  S  E  R  R  G  I  S  *  F  L  *  L  Q  G  S  G  H  D  H  H  N  *  S  K :   S  R  E  L  Y  I  S  R  K  :  Q  E  S  K  Q  *  N  K  R  G  S  E  R  D  T  T  K  W  S  K  Y  N  K  V  S  W  S  T  D  K  Y  I  *  Q  E  C  A  C  F  I  W  C  C  L  V  L  V  L  L  F  I  D  S  G  T  I  K  L  I  S  F  L  V  E  I  F  L  F  V  Q  *  R  K  *  Y  *  F  I  V  E  R  A  V  M  F  C  R  G  V  L  M  N  I  F  L  G  G  S  H  V  R  G  F  F  D  G  P  F  C  K  K  K  V  V  S  N  E  I  L  G  </first_frame>
            <second_frame>  *  T  *  N  R  R  *  Y  K  K  T  S  S  F  S  L  M  A  N  T  K  K  F  P  P  F  F  F  F  F  V  L  F  S  C  C  F  F  S  T  S  S  S  N  F  A  P   : E  I  K  V  Q  Q  D  K  D  E  P  Y  V  G  V  N  I  G  T  D  V  S  N  L  L  S  P  A  D  L  V  A  F  L  Q  L  Q  K  I  T  H  I  R  L  Y  D  A  D  P  D  I  L  K  A  L  A  K  T  K  I  R  V  I  I  S  V  P  N  N  Q  I  L  A  I  G  S  S  N  T  T  A  A  A  W  I  G  R  N  V  A  A  Y  Y  P  E  T  L  I  T  A  I  A  V  G  D  E  I  L  T  T  V  P  S  S  A  P  L  L  M  P  A  I  E  S  L  Y  S  A  L  V  A  A  N  L  H  N  Q  I  K  I  S  T  P  N  A  A  S  I  I  L  D  P  F  P  P  S  Q  A  F  F  N  Q  S  M  S  S  V  L  S  K  L  L  Q  F  C  S  R  T  Q  S  P  L  M  M  N  L  Y  P  Y  Y  V  F  M  Q  N  K  G  V  V  P  I  D  N  S  L  F  K  P  L  T  P  S  K  E  M  V  D  P  N  T  L  L  H  Y  T  N  V  L  D  A  M  I  D  S  V  Y  F  S  M  K  N  L  N  I  T  D  V  L  V  L  V  T  E  S  G  W  P  S  K  G  D  S  K  E  P  Y  A  T  I  D  N  A  D  T  Y  N  S  N  L  I  K  H  I  I  D  R  S  G  T  P  L  H  P  E  I  T  S  S  V  Y  I  Y  E  L  F  N  E  D  L  R  S  P  P  L  S  E  A  N  W  G  L  F  H  G  N  S  T  P  V  Y  L  L  H  V  S  G  S  G  T  F  L  A  N  D  T  T  N  Q  T  Y  C  I  A  M  D  G  V  D  K  R  T  M  Q  A  A  L  D  W  A  C  G  P  G  R  A  N  C  S  E  I  Q  P  G  E  S  C  Y  Q  P  N  D  V  K  N  H  A  S  Y  A  F  D  S  Y  Y  Q  K  E  G  G  S  P  S  S  C  D  F  K  G  V  A  M  I  T  T  T  D  P   : S  H  G  S  C  I  F  P  G  S :   K  K  V  S  N  K  T  S  E  V  V  N  A  T  Q  P  S  G  A  N  T  I  R  F  L  G  A  Q  T  S  I  F  D  K  N  V  H  V  L  F  G  V  A  L  C  L  F  Y  Y  S  L  I  Q  V  Q  L  S  *  L  V  F  *  L  K  S  F  Y  L  F  N  K  E  S  S  T  S  S  L  W  R  G  Q  *  C  F  A  E  E  C  L  *  I  F  F  W  E  D  H  M  *  G  D  S  L  M  D  L  F  V  K  R  K  L  Y  L  M  R  F  L  E </second_frame>
            <third_frame>   E  P  E  T  E  D  D  T  R  K  H  Q  A  S  L  *  W  Q  I  L  K  S  S  L  L  S  S  S  S  L  S  S  S  L  A  A  S  S  P  L  Q  V  Q  I  L  H  Q  :  R  *  K  C  S  K  T  K  M  S  H  M  W  E  *  T  *  V  Q  M  F  P  I  C  F  H  L  Q  T  W  L  L  F  C  N  Y  R  R  *  L  I  *  G  F  M  M  L  T  L  I  Y  S  K  H  *  L  R  P  K  *  E  *  L  L  V  C  L  T  T  K  F  L  L  L  G  P  L  I  L  L  Q  L  P  G  L  G  A  M  W  Q  L  I  T  L  K  L  L  S  L  Q  *  Q  L  G  M  K  S  *  P  L  C  Q  V  Q  L  L  C  L  C  Q  Q  L  S  H  F  I  V  L  *  W  L  Q  I  C  I  T  K  S  R  F  Q  L  Q  M  L  L  P  L  F  L  T  L  F  H  L  P  K  L  F  S  I  S  P  *  A  L  S  F  L  S  Y  C  S  S  V  Q  G  H  S  H  L  *  *  *  I  C  T  L  I  M  C  L  C  R  I  K  G  L  F  L  *  T  T  L  F  S  S  P  *  H  L  L  K  R  W  W  I  L  I  L  C  F  I  T  P  M  C  L  M  Q  *  L  I  Q  S  I  F  P  *  K  I  S  I  L  Q  M  C  *  F  L  L  P  S  Q  D  G  L  Q  R  G  I  L  K  S  L  M  L  Q  L  T  M  L  I  L  I  T  R  I  *  L  S  I  *  L  I  A  V  V  H  H  C  I  R  R  L  L  L  V  Y  T  Y  M  S  Y  S  M  R  I  *  G  H  P  H  C  P  R  Q  I  G  G  Y  S  M  G  I  Q  R  L  F  T  C  F  M  C  L  E  V  V  H  S  W  L  M  T  P  L  T  K  R  I  A  *  Q  W  M  G  L  I  R  E  Q  C  R  Q  L  *  I  G  L  V  D  R  G  G  Q  I  A  L  K  F  S  Q  E  R  V  V  I  S  L  M  M  *  R  T  M  L  H  M  H  L  I  A  I  I  R  K  K  G  D  L  L  V  L  V  T  S  R  E  W  P  *  S  P  Q  L  I  Q  :  V  T  G  V  V  Y  F  Q  E   : A  R  K  *  A  I  K  Q  A  R  *  *  T  R  H  N  Q  V  E  Q  I  Q  *  G  F  L  E  H  R  Q  V  Y  L  T  R  M  C  M  F  Y  L  V  L  P  C  A  C  F  I  I  H  *  F  R  Y  N  *  V  N  *  F  F  S  *  N  L  F  I  C  S  I  K  K  V  V  L  V  H  C  G  E  G  S  D  V  L  Q  R  S  A  Y  E  Y  F  F  G  R  I  T  C  K  G  I  L  *  W  T  F  L  *  K  E  S  C  I  *  *  D  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96679" stop="96799"/>
                    <exon start="96907" stop="98187"/>
                    <exon start="99163" stop="99190"/>
                    <exon start="99352" stop="99526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1602</number_coding_nucleotides>
                  <number_encoded_amino_acids>534</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKKTSSFSLMANTKKFPPFFFFFVLFSCCFFSTSSSNFAPEIKVQQDKDEPYVGVNIGTDVSNLLSPADLVAFLQLQKITHIRLYDADPDILKALAKTKIRVIISVPNNQILAIGSSNTTAAAWIGRNVAAYYPETLITAIAVGDEILTTVPSSAPLLMPAIESLYSALVAANLHNQIKISTPNAASIILDPFPPSQAFFNQSMSSVLSKLLQFCSRTQSPLMMNLYPYYVFMQNKGVVPIDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDSVYFSMKNLNITDVLVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHIIDRSGTPLHPEITSSVYIYELFNEDLRSPPLSEANWGLFHGNSTPVYLLHVSGSGTFLANDTTNQTYCIAMDGVDKRTMQAALDWACGPGRANCSEIQPGESCYQPNDVKNHASYAFDSYYQKEGGSPSSCDFKGVAMITTTDPSHGSCIFPGSKKVSNKTSEVVNATQPSGANTIRFLGAQTSIFDKNVHVLFGVALCLFYYSLIQVQLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="106818" PGL_stop="107934"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106818" e_stop="107137"/>
            <exon e_start="107232" e_stop="107334"/>
            <exon e_start="107421" e_stop="107766"/>
            <exon e_start="107893" e_stop="107934"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.922" e_score="0.997"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106818" e_stop="107137" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107138" i_stop="107231" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107232" e_stop="107334" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="107335" i_stop="107420" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="107421" e_stop="107766" e_length="346"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.922">
            <gDNA_intron_boundary i_start="107767" i_stop="107892" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="107893" e_stop="107934" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106818" stop="107137"/>
              <exon start="107232" stop="107334"/>
              <exon start="107421" stop="107766"/>
              <exon start="107893" stop="107934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106821" stop="107137"/>
              <exon start="107232" stop="107334"/>
              <exon start="107421" stop="107630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATTTTTGGTTTCTGAGACTTAAAAATTTATTGACAACTGTTTCAGGAATGGTATACAACAAAGGAGGAACTCATGGCAAGATGGAGTTTATGGCACAACTTGTCCAATCCTACCTGGAAAGAACTTCACTTATACCCTCCAAGCAAAAGACCAGATAGGTAGTTATTTCTACTTCCCATCACTTGCAATGCACAAGGCAGCAGGAGGATATGGTGCCATCAGAGTCTATAGCCGTCCTCGAATTCCAGTACCTTTTGCTCCACCTGCTCATGATTTCACTGTACTAGCTGGAGACTTGTACAAGAGAAGTCACAGG : CAACTGAAGTACATTTTAGATAGTGGTCATGATCTTCCGTTACCTGATGGTCTTATTATCAATGGTCGAGGATGGAACGGATACACATTTACAGTTGATCAAG : GTAAGACATATAGGTTCAGGATATCTAATGTGGGGATTGCGACATCAATTAATTTCAGAATTCAAGGGCACACGATGAAACTGGTTGAAGTTGAGGGATCACATACACTTCAGACAACCTACACTTCACTTGACATCCATCTAGGACAATCTTATTCAGTTTTAGTCACTGCCAATCAGCCTCCAAAGGACTACTACATCGTGGTCTCTTCACGATTCACCACACGAGTGCTAACCACTACTGCCGTTCTTCACTACAGCAACTCATGGACAAAAGTCTCTGGACCTCCCCCTGGAGGGCCTACTACTCAAATTAATTGGTCCCTTTACCAGGCCAGATCTATTCG : TTGGAATCTCACTGCAAGTGGACCAAGGCCTAATCCTCAAGG</gDNA_template>
            <first_frame> E  N  F  W  F  L  R  L  K  N  L  L  T  T  V  S  G  M  V  Y  N  K  G  G  T  H  G  K  M  E  F  M  A  Q  L  V  Q  S  Y  L  E  R  T  S  L  I  P  S  K  Q  K  T  R  *  V  V  I  S  T  S  H  H  L  Q  C  T  R  Q  Q  E  D  M  V  P  S  E  S  I  A  V  L  E  F  Q  Y  L  L  L  H  L  L  M  I  S  L  Y  *  L  E  T  C  T  R  E  V  T  G :   N  *  S  T  F  *  I  V  V  M  I  F  R  Y  L  M  V  L  L  S  M  V  E  D  G  T  D  T  H  L  Q  L  I  K  :  V  R  H  I  G  S  G  Y  L  M  W  G  L  R  H  Q  L  I  S  E  F  K  G  T  R  *  N  W  L  K  L  R  D  H  I  H  F  R  Q  P  T  L  H  L  T  S  I  *  D  N  L  I  Q  F  *  S  L  P  I  S  L  Q  R  T  T  T  S  W  S  L  H  D  S  P  H  E  C  *  P  L  L  P  F  F  T  T  A  T  H  G  Q  K  S  L  D  L  P  L  E  G  L  L  L  K  L  I  G  P  F  T  R  P  D  L  F   : V  G  I  S  L  Q  V  D  Q  G  L  I  L  K  </first_frame>
            <second_frame>  R  I  F  G  F  *  D  L  K  I  Y  *  Q  L  F  Q  E  W  Y  T  T  K  E  E  L  M  A  R  W  S  L  W  H  N  L  S  N  P  T  W  K  E  L  H  L  Y  P  P  S  K  R  P  D  R  *  L  F  L  L  P  I  T  C  N  A  Q  G  S  R  R  I  W  C  H  Q  S  L  *  P  S  S  N  S  S  T  F  C  S  T  C  S  *  F  H  C  T  S  W  R  L  V  Q  E  K  S  Q   : A  T  E  V  H  F  R  *  W  S  *  S  S  V  T  *  W  S  Y  Y  Q  W  S  R  M  E  R  I  H  I  Y  S  *  S  R :   *  D  I  *  V  Q  D  I  *  C  G  D  C  D  I  N  *  F  Q  N  S  R  A  H  D  E  T  G  *  S  *  G  I  T  Y  T  S  D  N  L  H  F  T  *  H  P  S  R  T  I  L  F  S  F  S  H  C  Q  S  A  S  K  G  L  L  H  R  G  L  F  T  I  H  H  T  S  A  N  H  Y  C  R  S  S  L  Q  Q  L  M  D  K  S  L  W  T  S  P  W  R  A  Y  Y  S  N  *  L  V  P  L  P  G  Q  I  Y  S  :  L  E  S  H  C  K  W  T  K  A  *  S  S  R </second_frame>
            <third_frame>   E  F  L  V  S  E  T  *  K  F  I  D  N  C  F  R  N  G  I  Q  Q  R  R  N  S  W  Q  D  G  V  Y  G  T  T  C  P  I  L  P  G  K  N  F  T  Y  T  L  Q  A  K  D  Q  I  G  S  Y  F  Y  F  P  S  L  A  M  H  K  A  A  G  G  Y  G  A  I  R  V  Y  S  R  P  R  I  P  V  P  F  A  P  P  A  H  D  F  T  V  L  A  G  D  L  Y  K  R  S  H  R  :  Q  L  K  Y  I  L  D  S  G  H  D  L  P  L  P  D  G  L  I  I  N  G  R  G  W  N  G  Y  T  F  T  V  D  Q   : G  K  T  Y  R  F  R  I  S  N  V  G  I  A  T  S  I  N  F  R  I  Q  G  H  T  M  K  L  V  E  V  E  G  S  H  T  L  Q  T  T  Y  T  S  L  D  I  H  L  G  Q  S  Y  S  V  L  V  T  A  N  Q  P  P  K  D  Y  Y  I  V  V  S  S  R  F  T  T  R  V  L  T  T  T  A  V  L  H  Y  S  N  S  W  T  K  V  S  G  P  P  P  G  G  P  T  T  Q  I  N  W  S  L  Y  Q  A  R  S  I  R :   W  N  L  T  A  S  G  P  R  P  N  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106844" stop="107137"/>
                    <exon start="107232" stop="107334"/>
                    <exon start="107421" stop="107766"/>
                    <exon start="107893" stop="107932"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFIDNCFRNGIQQRRNSWQDGVYGTTCPILPGKNFTYTLQAKDQIGSYFYFPSLAMHKAAGGYGAIRVYSRPRIPVPFAPPAHDFTVLAGDLYKRSHRQLKYILDSGHDLPLPDGLIINGRGWNGYTFTVDQGKTYRFRISNVGIATSINFRIQGHTMKLVEVEGSHTLQTTYTSLDIHLGQSYSVLVTANQPPKDYYIVVSSRFTTRVLTTTAVLHYSNSWTKVSGPPPGGPTTQINWSLYQARSIRWNLTASGPRPNPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="108427" PGL_stop="109082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108427" e_stop="108460"/>
            <exon e_start="108555" e_stop="109082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108427" e_stop="108460" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="108461" i_stop="108554" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="108555" e_stop="109082" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108427" stop="108460"/>
              <exon start="108555" stop="109081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108428" stop="108460"/>
              <exon start="108555" stop="109082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108428" stop="108460"/>
              <exon start="108555" stop="109082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108428" stop="108460"/>
              <exon start="108555" stop="108921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAAGGGACACAATTGCACGTTGCACCGTCCAG : GTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACAATACTTTACG</gDNA_template>
            <first_frame> L  K  G  H  N  C  T  L  H  R  P   : G  V  S  *  V  M  D  R  N  I  H  G  I  G  Q  C  R  N  V  E  H  K  V  *  E  L  V  K  E  V  L  G  S  T  I  L  L  K  S  L  L  P  S  Q  F  L  E  R  *  T  P  N  T  K  E  C  Y  S  L  W  Q  S  *  R  S  S  Y  *  A  S  L  K  Q  C  S  S  F  L  S  R  E  G  D  R  R  I  S  M  *  A  K  G  K  I  *  S  G  K  S  *  R  S  *  V  C  A  M  T  Y  S  *  S  L  L  F  L  L  Y  H  I  C  I  M  C  L  I  V  Q  L  Y  H  F  T  S  H  Y  F  F  P  K  L  L  V  K  P  T  *  I  S  *  E  *  L  S  V  L  Q  G  H  S  S  C  C  L  S  C  I  P  K  I  F  G  T  I  L  Y  </first_frame>
            <second_frame>  L  R  D  T  I  A  R  C  T  V  Q  :  V  Y  P  K  S  W  T  A  I  Y  M  A  L  D  N  V  G  M  W  N  I  R  S  E  N  W  S  R  R  Y  L  G  Q  Q  F  Y  L  R  V  Y  S  P  A  N  S  W  R  D  E  L  P  I  P  K  N  A  I  L  C  G  K  A  R  G  H  R  T  R  P  L  *  N  N  V  V  V  F  C  H  E  R  V  T  G  V  Y  Q  C  E  L  R  E  R  F  N  L  E  R  V  K  E  A  E  F  A  L  *  L  I  A  S  L  F  F  S  F  Y  I  I  F  V  S  C  V  *  L  F  N  C  I  I  S  H  L  I  I  F  S  P  N  F  W  L  N  L  H  R  L  A  E  N  N  F  L  Y  F  K  V  I  R  V  V  V  Y  L  V  F  L  K  Y  L  E  Q  Y  F  T </second_frame>
            <third_frame>   *  G  T  Q  L  H  V  A  P  S  R :   C  I  L  S  H  G  P  Q  Y  T  W  H  W  T  M  *  E  C  G  T  *  G  L  R  I  G  Q  G  G  T  W  V  N  N  S  T  *  E  F  T  P  Q  P  I  L  G  E  M  N  S  Q  Y  Q  R  M  L  F  F  V  A  K  L  E  V  I  V  L  G  L  F  E  T  M  *  *  F  S  V  T  R  G  *  P  A  Y  I  N  V  S  *  G  K  D  L  I  W  K  E  L  K  K  L  S  L  R  Y  D  L  *  L  V  S  S  F  P  S  I  S  Y  L  Y  H  V  F  N  C  S  T  V  S  F  H  I  S  L  F  F  P  Q  T  F  G  *  T  Y  I  D  *  L  R  I  T  F  C  T  S  R  S  F  E  L  L  F  I  L  Y  S  *  N  I  W  N  N  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108428" stop="108460"/>
                    <exon start="108555" stop="108767"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRDTIARCTVQVYPKSWTAIYMALDNVGMWNIRSENWSRRYLGQQFYLRVYSPANSWRDELPIPKNAILCGKARGHRTRPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 406 chains have been computed
$ 
$ memory statistics:
$ 762704 bytes spliced alignments in total
$ 322 spliced alignments have been stored
$ 2368 bytes was the average size of a spliced alignment
$ 32768 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1820 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 426 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:37:07
-->
