<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:54:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598514" ref_strand="+" ref_description="SGN-U598514 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggcattcagctcctttagaggtcaagaaatgataacattgagaccatcaaatcctgaggcactacctgctggcacctcatatacattcttggagctgcactggttggaaggctgcagtttggcctttcttattaccatatacctgctctggcagctgaatgagccagtattttctgatcgagccgttaaacaggcaataattgcattgaagaagggggcacaacttttgaagcatggcagaagagggaagcccaacttctattctcttaaggttatccgcggtaaattcttaatgaaacatatatcattgccttttaaccaagaaagtcgtcataacaaataatataatggtcggaattttgtactctctggcataactgaataacatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="4522" stop="2591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4225" g_stop="4032" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4031" i_stop="3090" i_length="942">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3089" g_stop="2891" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="393" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-U598514" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4225" e_stop="4032"/>
          <exon e_start="3089" e_stop="2891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCAGCTCCTTTAGAGGTCAAGAAATGATAACATTGAGACCATCAAATCCTGAGGCACTACCTGCTGGCACCTCATATACATTCTTGGAGCTGCACTGGTTGGAAGGCTGCAGTTTGGCCTTTCTTATTACCATATACCTGCTCTGGCAGCTGAATGAGCCAGTATTTTCTGATCGAGCCGTTAAACAGGTTTTTCTTTCTTCAAATTCTGTTTTTTTTGCTTGCTTTCATTGTTTTGACTAGTAAGTTCTTGTTTTTTCCTGGACTAGATTCTTGATATTTGCCGTATTCCCCTTTTTATGTTTATATTTTTAGTATTGTTGTCTAACAGTGGTAAAGAATAATTTCTTTTAAATAATCACTATTGCGTAATCAAGGCATTCAGAGGTCCTATATTGTTCCATGAGGAAGCAGTAATTTTTTGTGACATTCTTGTATTTGTTTTGCAGTATTTGTTCCTCCTAAAGTAAACAAGTTCCGAGTGAAAGCTATATGTATCAGGGCCTTGAGCTAATTGCTTTTATTTAGACCTTCTTTTGCAATTTTATAGCATAATATAGGTCTAGAGGGCTGATGATACACATCATAGTATAAAAGAAAATACTTGCGGAGATTCATTTTTAAAAAGTTGATGAAAATATGTTTATGTTCTTGTTGCTTTGAAAGATGAATAGAAACTTGATGATCTCATTAGAACTTTTTCTTTGACATTTTCCCTCCATATTTGGTTAAATTTTAAACTTAGTTTCCTCAGAAAGATTATATCCTCTAATTTGGTCATTCACCAACACCATTAAATCTTCTTCTTGCTTAAGTTAGCTCACTAATATTATTTTCCTTGATGATTGTCTTATTTAACTGACCCTATTTGTTTGGGACTTAGGTACAGTTGTTGTTGTCTCATGAGTCTTCTATGATCAGCATATGATCTAATTGCAGATTTAACATTTTTATTGTTAGATATCTATTGGTAATTGTAGAGCGAGAAATTATGTTTTTTGCTGATATCACCCATTCATATGTTTTCTTTCGGGGTCACGTTGCTGTTGACGATTTAAACCAGCAGGAAATTTTATTGTACTAACATCTTTTTTTCTCCTCTTGTTACTTCCTCTCTCAAACAATGTCCAGGCAATAATTGCATTGAAGAAGGGGGCACAACTTTTGAAGCATGGCAGAAGAGGGAAGCCCAACTTCTATTCTCTTAAGGTTATCCGCGGTAAATTCTTAATGAAACATATATCATTGCCTTTTAACCAAGAAAGTCGTCATAACAAATAATATAATGGTCGGAATTTTGTACTCTCTGGCATAACTGAATAACATATTG</genome_strand>
        <mrna_strand>GGGCATTCAGCTCCTTTAGAGGTCAAGAAATGATAACATTGAGACCATCAAATCCTGAGGCACTACCTGCTGGCACCTCATATACATTCTTGGAGCTGCACTGGTTGGAAGGCTGCAGTTTGGCCTTTCTTATTACCATATACCTGCTCTGGCAGCTGAATGAGCCAGTATTTTCTGATCGAGCCGTTAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAATTGCATTGAAGAAGGGGGCACAACTTTTGAAGCATGGCAGAAGAGGGAAGCCCAACTTCTATTCTCTTAAGGTTATCCGCGGTAAATTCTTAATGAAACATATATCATTGCCTTTTAACCAAGAAAGTCGTCATAACAAATAATATAATGGTCGGAATTTTGTACTCTCTGGCATAACTGAATAACATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598655" ref_strand="+" ref_description="SGN-U598655 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15228492|ref|NP_186971.1| (e_value=6e-13) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G03210.1 (e_value=6e-15) | Symbol: None | expressed protein | chr3:740777-742316 FORWARD | Aliases: T17B22.10, T17B22_10; ">
      <seq>gcgacattctgttcttgaaatttttttgaagatctctgttttcctgttcttgaaaaatcttcatacaaagttgtttctttttcaatttccaacaacccaaatcaaagattgctaatctgctttcaaagtttattccttttctctttttatgggaattccctttcaagaatagcagcaaagacactccattcatcttcaattggatccaatattccatttattgaaactctgctgccaaagctctgttttctttttcttttcgtgtgatttaacagtcagaatcagagaaataatgtggggcgccgttcaattgggagtattggcggcctttcttgtactctttgtccctgtcggtatggctggttggcacttgagtcgcaacaaaatgttatttttcagctgtgccctctttattacccttgctgtttgtgttcatttgaccccttatttcccttcagtctcctctatgctttcttcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="25924" stop="27003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26223" g_stop="26703" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U598655" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26223" e_stop="26703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACATTCTGTTCTTGAAATTTTTTTGAAGATCTCTGTTTTCCTGTTCTTGAAAAATCTTCATACAAAGTTGTTTCTTTTTCAATTTCCAACAACCCAAATCAAAGATTGCTAATCTGCTTTCAAAGTTTATTCCTTTTCTCTTTTTATGGGAATTCCCTTTCAAGAATAGCAGCAAAGACACTCCATTCATCTTCAATTGGATCCAATATTCCATTTATTGAAACTCTGCTGCCAAAGCTCTGTTTTCTTTTTCTTTTCGTGTGATTTAACAGTCAGAATCAGAGAAATAATGTGGGGCGCCGTTCAATTGGGAGTATTGGCGGCCTTTCTTGTACTCTTTGTCCCTGTCGGTATGGCTGGTTGGCACTTGAGTCGCAACAAAATGTTATTTTTCAGCTGTGCCCTCTTTATTACCCTTGCTGTTTGTGTTCATTTGACCCCTTATTTCCCTTCAGTCTCCTCTATGCTTTCTTCACCA</genome_strand>
        <mrna_strand>GCGACATTCTGTTCTTGAAATTTTTTTGAAGATCTCTGTTTTCCTGTTCTTGAAAAATCTTCATACAAAGTTGTTTCTTTTTCAATTTCCAACAACCCAAATCAAAGATTGCTAATCTGCTTTCAAAGTTTATTCCTTTTCTCTTTTTATGGGAATTCCCTTTCAAGAATAGCAGCAAAGACACTCCATTCATCTTCAATTGGATCCAATATTCCATTTATTGAAACTCTGCTGCCAAAGCTCTGTTTTCTTTTTCTTTTCGTGTGATTTAACAGTCAGAATCAGAGAAATAATGTGGGGCGCCGTTCAATTGGGAGTATTGGCGGCCTTTCTTGTACTCTTTGTCCCTGTCGGTATGGCTGGTTGGCACTTGAGTCGCAACAAAATGTTATTTTTCAGCTGTGCCCTCTTTATTACCCTTGCTGTTTGTGTTCATTTGACCCCTTATTTCCCTTCAGTCTCCTCTATGCTTTCTTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597634" ref_strand="+" ref_description="SGN-U597634 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157351632|emb|CAO42591.1| (e_value=3e-53) unnamed; (*ATH) AT4G20830.2 (e_value=6e-49)  Symbol: None | FAD-binding domain-containing protein, similar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=5e-48) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>gaactctatgttgaatacagatgagaagcaagagaagatgagtgatgtgatgtggagagcttatactgatgagctttatagcagtaagctgctgcgacaatctggtggaccacttttgttgctggacattcatgcattgagtaataattgtggaactcattgtactgctgacggaatgcattatcacagagttgtatatgaagctgcagttcatgtaatgctaaatggattgcttatagaatctaatcagaagctgtaatggagccagggttaccgtatcctcctccagttatgtgtccaccaacaccaacagttgggcaaacaccagctgggaaggcatgaactttgcttttctcccaaattctgtagtaaagttcgcctagaagtgcaccagcttggacccaagcagtttcattttggatatctacatcaattgaatgcaggttagacatgtcaagaagaacaaaactgatgttggagacataagaaatgccttcgtagtcatggcctccacttcggatctttaggtacttgtcagttttcctgcagcaagtgacagcaacctgaacatgggattcttgcaacggagtgaaaataatgtcgggttttggagtggttgatctattgaacctctggtttctgatatagtgttgtagcacagacttatatgaggagttgtttggagtgtacactcttgacagtatgtggtcagatggacgtgaatgttcggataagcactgaaggaagctcaggtatgatagagttgaggctgacaacggaacaaaatggataacaaaaagaaatgaagaaatggttagaaagagagagttctccatatcgaaaccctggtttccttgttttcttttatttttccgctatggggacatggagagttaagctattccagggccactagaaatataacaagagaagatgccagcaaatcaggtgtaatacaaagttcatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="27076" stop="31016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27375" g_stop="27643" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27644" i_stop="30015" i_length="2372">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30016" g_stop="30716" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="970" r_length="701" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U597634" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>970</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27375" e_stop="27643"/>
          <exon e_start="30016" e_stop="30716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTATGTTGAATACAGATGAGAAGCAAGAGAAGATGAGTGATGTGATGTGGAGAGCTTATACTGATGAGCTTTATAGCAGTAAGCTGCTGCGACAATCTGGTGGACCACTTTTGTTGCTGGACATTCATGCATTGAGTAATAATTGTGGAACTCATTGTACTGCTGACGGAATGCATTATCACAGAGTTGTATATGAAGCTGCAGTTCATGTAATGCTAAATGGATTGCTTATAGAATCTAATCAGAAGCTGTAATGGAGCCAGGGTAATAAAATTAGTTTGTAATTGCTAGAGCTTTCACTATTATATGGGATTCTTTTCCTGATGTTACACTCATCAACTGAAGACCAGTGGCAAGAAGTTTTTGACGCTAGTCCTTACTGAGGTTCATATACACTCCCCCCTCCCTTTTTCTTCAATTGCTGAATTACTAATACTCATACAGCTTATATGTTGGAGCAAGGAAACCTGTTGTCTCAGTCTCACAACAAATTTCAACAGGAACATGTATAGAGATTCACATCAATGTTTAATGGTTTTAATATCTCCATGAAATGCACCTATATTCAGTTTTCTCTTGCATTCCATACAAAGCTGATCTAATTTCTTTCAGAGCTAGGCAAATATGGTAAAAAACATATTGGTGATTCTCTTTGTGCCCTTTTATTCTTTCCCATCAGGTTGAACAGGTCCTCAGACTTATACATGTTAAATTCCTGCTATTCTTTGTCAAAATCATTGTTGAAAATGTAGTCCAAACATCCAATAAGCTAGTATGTGTATATATATATATATATATATATATATATTTTCATATCCAACCAATAGTATGAGCTGAAATTTCATAGCAAAATTCATTTTGACCAATATGCTCTCTCCTGAAATGGAGGTCCTTAGATTTAAGCTCTACTCAGTGATTAGTTGCTGCTAACTCCCAAGCGATTATATGTCAAGTTGAATAATTTTCCCTCAGATACCTTCTTGGTAATGTTTTATTAACGAAACTTTACTCGTAAAAAAAGGAGACAGGTGAACAGTTTCGAAGTTTAGATTATTTTTGAGTAATTTATGGATTATACAATTTAGATATTAGTTCTTTAGTTAATGAACTAAAGTGGGCGTGTAGGTTTACAGTCAGTTACACAACTACATTCTAGGAAACTAGTTGCACGATACAGCTTAATCACACTTGAGTTCCTGCATTATACTTATGAGCCAGAGCTACAAACTTTTATGAAGTTTGTCTTTGGATGCGTTAGATTTTGATGTAGTTTCTTTTTTGACGGAGGTTCTTATCTAGAGTGCGGGATGTTTAAAACCTTTGATTGGAAAATAGGTAATTAGGACTAGGAAAAACTTACACCTCTGTCTATAAACCCACCTCCCTCCAAAGGAAAGGGAAAAGAGAAATACATATTCTATTTGAGGCTTATTAAGATGTATGAGAACTGAGAAAGGTGTGTGTTATTTGCTTTTCTTAGTCCCTTGAAACAGACTTGATTCAGCATAAAAGGAAGTTGCAAATACATATTATACAGAAGGTTGTCTCTCAAACTAATCTTTTCACAGGAAACTTTGTGGAAATACTGATACCTCAAGGTTGCACAGAGTACTTTATGCTGCTAAAGGAGGGATGCTCTGTTCGTTCCAGAAGAAGTTATCTGGATCAACAAAAGTCTTGACTTGGACCAATTTATTAAAATTATCCTTGAAATACTTCAATCCATAAACACGACCTTCAATGTAGCGATTGTTTCCATTATGGTTGACCCCTATGTCAAGGTCTCTATAATTTAAATATGCACATCTTGGGGATTTTGACACAAAAGGAGTCATGTAGTTGTACAATACTCTGGTCTGGTTCAAATAGAAGTTCTCTGCTTCGTTTCCTTCTTTTCCCCAGTTTGCTGCATACTGGATTTTAAATATATTGCCTGCTCTGTGAGGAAATGGAGTTCCCCATTCTGGTATCTCACTCATCCTTCCACCATATTGATTGAATACTAATTCTGTGTCTCCTAATTCAATCATTTTATCTAATAGAGATTTTAGCTCATCCTTGGGAATGGGTTTCTGCAAATAGTCTGACTTGCGCTTCAGAAACTTCGCTCCAGGTTTTCGGTTGAGCAAAACATCAGGCAGTGTTCCATTAGGGAAACTTGCCCAGAAAAGTGCAGACTCTATCCAACTCATTTCCTTGCAATCCTCGATATGTAAACCCAATTGAGGAAAATCCCTATTCATGATGGATAGAAGTTCTTTGGAATCTCCAAGAAATAATGATACAAATGTTGCTGTAATTGTCTTAGTTCCTTTTTGCTTCTCATCAATAGGTTTTAGAGCTAACCTTATAAAGAGATTGCTATCTATTTTCTCTGCAATGAATTGCCACCAGTAAACAATGTCAATTGCATTTTCTTCGAGGGTCCTCACTACCCGGAAAACAGTAACAACATCAGGAACTTTTACCAATCTAAGTTTGTAGGCCGATATCACTCCAAAGCTAGCACCACCCCCACCTCTGATCGCCCAAAACAGGTCTTCTCCCATTGATTCTCTGTTAAGAATTCTACCGTGAACATCCACTATGCGTGCATCAACTAAATTGTCCACTGACAGTCCATATTTTCTTAACAGGTTACCGTATCCTCCTCCAGTTATGTGTCCACCAACACCAACAGTTGGGCAAACACCAGCTGGGAAGGCATGAACTTTGCTTTTCTCCCAAATTCTGTAGTAAAGTTCGCCTAGAAGTGCACCAGCTTGGACCCAAGCAGTTTCATTTTGGATATCTACATCAATTGAATGCAGGTTAGACATGTCAAGAAGAACAAAACTGATGTTGGAGACATAAGAAATGCCTTCGTAGTCATGGCCTCCACTTCGGATCTTTAGGTACTTGTCAGTTTTCCTGCAGCAAGTGACAGCAACCTGAACATGGGATTCTTGCAACGGAGTGAAAATAATGTCGGGTTTTGGAGTGGTTGATCTATTGAACCTCTGGTTTCTGATATAGTGTTGTAGCACAGACTTATATGAGGAGTTGTTTGGAGTGTACACTCTTGACAGTATGTGGTCAGATGGACGTGAATGTTCGGATAAGCACTGAAGGAAGCTCAGGTATGATAGAGTTGAGGCTGACAACGGAACAAAATGGATAACAAAAAGAAATGAAGAAATGGTTAGAAAGAGAGAGTTCTCCATATCGAAACCCTGGTTTCCTTGTTTTCTTTTATTTTTCCGCTATGGGGACATGGAGAGTTAAGCTATTCCAGGCCAACTAGAAATATAACAAGAGAAGATGCCAGCAAATCAGGTGTAATACAAAGTTCATCAAG</genome_strand>
        <mrna_strand>GAACTCTATGTTGAATACAGATGAGAAGCAAGAGAAGATGAGTGATGTGATGTGGAGAGCTTATACTGATGAGCTTTATAGCAGTAAGCTGCTGCGACAATCTGGTGGACCACTTTTGTTGCTGGACATTCATGCATTGAGTAATAATTGTGGAACTCATTGTACTGCTGACGGAATGCATTATCACAGAGTTGTATATGAAGCTGCAGTTCATGTAATGCTAAATGGATTGCTTATAGAATCTAATCAGAAGCTGTAATGGAGCCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCGTATCCTCCTCCAGTTATGTGTCCACCAACACCAACAGTTGGGCAAACACCAGCTGGGAAGGCATGAACTTTGCTTTTCTCCCAAATTCTGTAGTAAAGTTCGCCTAGAAGTGCACCAGCTTGGACCCAAGCAGTTTCATTTTGGATATCTACATCAATTGAATGCAGGTTAGACATGTCAAGAAGAACAAAACTGATGTTGGAGACATAAGAAATGCCTTCGTAGTCATGGCCTCCACTTCGGATCTTTAGGTACTTGTCAGTTTTCCTGCAGCAAGTGACAGCAACCTGAACATGGGATTCTTGCAACGGAGTGAAAATAATGTCGGGTTTTGGAGTGGTTGATCTATTGAACCTCTGGTTTCTGATATAGTGTTGTAGCACAGACTTATATGAGGAGTTGTTTGGAGTGTACACTCTTGACAGTATGTGGTCAGATGGACGTGAATGTTCGGATAAGCACTGAAGGAAGCTCAGGTATGATAGAGTTGAGGCTGACAACGGAACAAAATGGATAACAAAAAGAAATGAAGAAATGGTTAGAAAGAGAGAGTTCTCCATATCGAAACCCTGGTTTCCTTGTTTTCTTTTATTTTTCCGCTATGGGGACATGGAGAGTTAAGCTATTCCAGGGCCACTAGAAATATAACAAGAGAAGATGCCAGCAAATCAGGTGTAATACAAAGTTCATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564541" ref_strand="+" ref_description="SGN-U564541 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|4138912|gb|AAD13631.1| (e_value=3e-123) expansin precursor [Lycopersicon esculentum]; (*ATH) AT3G03220.1 (e_value=1e-116) | Symbol: None | expansin, putative (EXP13), similar to expansin precursor GB:AAD13631 from (Lycopersicon esculentum); alpha-expansin gene family, PMID:11641069 | chr3:742361-744054 REVERSE | Aliases: T17B22.9, T17B22_9; (*SWP) sp|Q9M9P0|EXP13_ARATH (e_value=1e-115) Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13; ">
      <seq>tctctaatggttcaatttaaaaagagagaaaaaggggcgcctacaagaccaattggcaaagttcaaaaaagcagtgaagaaacatgaccatccatggcaatatctctgcaaaaagtgacaaactttcccttttctcatgattccctgcatagtgaaacaactcatcagattcaagagtttaagcaaagcaacaatttttcatctctttgatagtgaagaagaacatatacactccatctgtaagtatgctactactgtcacttttagtagcattcgcactcttttctccaaccccatttgtccattctcactacaactggtcaccttcttcttcctccacctccaattttcagtccgagtggcgtcctgcacgcgccacctattacgccgccgccgacccacgtgacgttgtgggtggcgcttgtggatacggggatttggagagaaatgggtatggaaaagctacagctgggttaagtactgtgctttttgacaagggtcagatctgtggtgcttgttatgaagtgaggtgtgtggaggatctgcgttggtgcattccgggtacttctataattgttacagctactaatttttgtgcaccaaattatgggtttgatctagatggtggtggtcactgtaatccacctaatgcccattttgtgctacccattgaggcttttgagaagattgccatttggaaagcttctaatatgcccattcaataccgcaggataaagtgcagaaaggaaggtggagttcgattcactcttggtggctctggtatattcctgtcagttctaatcagtaatgttgcaggttcgggtgatatagtggcagcaaaagttaagggttcaagaacaggctggcttcctatgggtaggaactggggccaaaattggcacattaatgctgacttaaagaatcagccgctttcttttgagatgactagtggtgatggggccaccttaacatcttacaatgtagctcccaagaattggaattttggtcagacctttgaaggcaagcagtttgggtcttagactcatgccaaaagtgtatctattgctcatcttttattttggattgctcaacattggctagcaatgttgggacatttttgttcgagttcatgttggacaagtgactacctgattaagtcgttgcagagcaaagctctgcgattgtgcggtatgttgttgttcactcaatccttgtgaacttgaacggaaccagagaagaaacttgccacgtgcaaggcaattttaccaagcaattgttttgccagtcaaatgttgcagaacctgaatcaaagttgttagaattgttgatttgtagattaagaatgttccttttcgaatctgatgaaatttaaaaactcatcaaaaggagacaaatatttccttgttattgtagatttttttgtcaaacgatcaaaacattatccttatcttgtcacctttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="34507" stop="30844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34198" g_stop="33490" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="730" r_length="708" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33489" i_stop="31879" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31878" g_stop="31144" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="1465" r_length="735" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-U564541" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1444</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34198" e_stop="33490"/>
          <exon e_start="31878" e_stop="31144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAAAAGGGGCGCCGACAAGCCCAATTGGCAAAGTTCAAAAAAGCAGTGAAGAAACATGACCATCCATGGTAATATCTCTGCAAAAAGTGACAAACTTTCCCTTTTCTCATAATTCCCTGCATAGTGAAACAACTCATCAGATTCAAGAGTTTAAGCAAAGCAACAATTTTTCATCTCTTTGATAGTGAAGAAGAACATATACACTCCATTTTGTAAGTATGCTACTACTGTCACTTTTAGTAGCATTCGCACTCTTTTCTCCAACCCCATTTGTCCATTCTCACTACAACTGGTCACCTTCTTCTTCCTCCACCTCCAATTTTCAGTCCGAGTGGCGTCCTGCACGCGCCACCTATTACGCCGCCGCCGACCCACGTGACGTTGTGGGTGGCGCGTGCGGATATGGGGATTTGGAGAGAAATGGGTATGGAAAAGCTACAGCTGGGTTAAGTACTGTGCTTTTTGACAAGGGTCAGATCTGTGGTGCTTGTTATGAAGTGAGGTGTGTGGAGGATCTGCGGTGGTGCATTCCGGGTACTTCTATAATTGTTACAGCCACTAATTTTTGTGCACCAAATTATGGGTTTGATCTAGATGGTGGTGGTCACTGTAATCCACCTAATGCCCATTTTGTGCTACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAGGTTCGTGCAGCAACTAATATATGCTTGTTTTTAGAAAATATCTAACTGATTCTATGTTTCTCCTAATCCAAGAATCATACTTGTAGAATACAGTTATTCCATTTTAATTTATTTGTCCGATTATGACTTGATGTGGAATTTAAGAAAGCAAGAAAGACTTATCAAAATGTGTTATAATTTTCTAGTGTTAAGCAGGTTAGGTGAAAAGTTGAAAATAAATAGTTGCTAATAAAGGAAAGAGGCTAACAATCTAAACACACTAAAAACGAAAGCAAGACAAACAAATTGAAATGGACTGGATATTATTTAGCGTTAGAATGAAATAGAACTGAGAAAAGGGGAATGGATTCATAACTCAGATAATATAGGACTGAGGTTTAGTTGTTATATTGATTTACCCATTTATAGCCAAAAGTTTTACCAACTGTCAGCTAAAACATTCTCTGAACTGGTTTGATTACAGCTTAAAAACATCAAGTATTTACAGCTGTAGTTGAGGTTGAGGCCCGGGAGAAGAGCTGTGTTTGAGATTCTTGAATATTTAATGATAGGTAGAAACAAAAAGAAAGTATCTGAAGGACATTTACTGAAAACAGAAATGAAATTTGAATTAATGCTAAGGACAGGTAGAAATGAAAAAAAATAGACATTGCAATTGAGAGTACGAAAAGAATGAAGGGGGAAAAGGAAATAGAGATGTAAAGTACAATGGGCCCTAAAGGAAAAAGCCAATGAAATCTCCTGTTGATGAACTACACGAACCTAGCTATTACTTGTGATTTCATTGGCTTTTTCCTTTAGTAAGTAATTTCAATGACTTCCAGGGAGGGGCAAATCTTTTTCTAATATTTATGATATGCATGATCTGTATCAGAAGAATCATTATCTATGTATTGATTTCTGTAGATTCTCATATCTTCTATTTGTTTCAAAAGTTATCCTGAATTGTAATGTGAATGTTTCTCTTCAAGGGAAGTCTCTAATAACCTTTTGGCCAACGCATGTGAAAAAATATAAGCATATGGAACATCCAAACAAATGTATTTATAAAAATATCCTGCTGAAGATGATCTAAAGTTCATTTGTATTGGAAAATGAATTGAGAGCTTCCTGGGAAATGGGAATTGAACAGCACTATTGGTTCTGGCTGTGACTACCTCCCTATCAGTTTCACTTCTCCATCCTGTCCTAATAAAATAAATTCTACAAGCTAGAACTTTAGACCCATTCATTTGCTTAAGTCAATGGTGATTTATGTGCAAATAGATATAGGGATACACTCACAAGAGGTATTCCATGTCGCAATCCACCAAATATGCACCTTTTGGTATTATTTGCGTTCCATAATATTTTGTATAGAAATTAGATGTACTTCCCAACCAAGAAGCACCATGAAAAGATTTGAGACTGATTACACCATCCACCTTCAAGTGTCTTTTCTTTCCGCTTGTCCATTCAGTGCAATTTTCTGCAAATTTCATGTAGTCCTTCTGATCCCAAAATAGGTCTCCCTTTTTAATTTGACAATGCAAGTAATTTCCAGAATTCCCTTGTTGAAGACCTTTTATGTATGGCACCTAACCATATGCTTGGTTTCTTAATTCTGAACAGGATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCTTGTCAGTTCTAATCAGTAATGTTGCAGGTTCGGGTGATATAGTGGCAGCAAAAGTTAAGGGTTCAAGAACAGGCTGGCTTCCTATGGGTAGGAACTGGGGCCAAAACTGGCACATTAATGCTGACTTAAAGAATCAGCCGCTTTCTTTTGAGATGACTAGTGGTGATGGGGCCACCTTAACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAAGTGTATCTATTGCTCATCTTTTATTTTGGATTGCTCAACATTGGCTAGCAATGTTGGGACATTTTTGTTCGAGTTCATGTTGGACAAGTGACTACCTGATTAAGTCGTTGCAGAGCAAAGCTCTGCGATTGTGCGGTATGTTGTTGTTCACTCAATCCTTGTGAACTTGAACGGAACCAGAGAAGAAACTTGCCACTTGCAAGGCAATTTTATCAAGCAATTGTTTTGCCAGTCAAATGTTGCAGAACCTGAATCAAAGTTGTTAGAATTGTTGATTTGTAGATTAAGAATGTTCCTTTTCGAATCTGATGAAATTTATGAACTCATCCAAAGGAGACAAATATTTCCTTGTTATTGTAGATTTTTTTGTCAAACGATCAAAACATTATCCTTATCTTGTCACCTTTATTTA</genome_strand>
        <mrna_strand>AGAGAGAAAAAGGGGCGCCTACAAGACCAATTGGCAAAGTTCAAAAAAGCAGTGAAGAAACATGACCATCCATGGCAATATCTCTGCAAAAAGTGACAAACTTTCCCTTTTCTCATGATTCCCTGCATAGTGAAACAACTCATCAGATTCAAGAGTTTAAGCAAAGCAACAATTTTTCATCTCTTTGATAGTGAAGAAGAACATATACACTCCA-TCTGTAAGTATGCTACTACTGTCACTTTTAGTAGCATTCGCACTCTTTTCTCCAACCCCATTTGTCCATTCTCACTACAACTGGTCACCTTCTTCTTCCTCCACCTCCAATTTTCAGTCCGAGTGGCGTCCTGCACGCGCCACCTATTACGCCGCCGCCGACCCACGTGACGTTGTGGGTGGCGCTTGTGGATACGGGGATTTGGAGAGAAATGGGTATGGAAAAGCTACAGCTGGGTTAAGTACTGTGCTTTTTGACAAGGGTCAGATCTGTGGTGCTTGTTATGAAGTGAGGTGTGTGGAGGATCTGCGTTGGTGCATTCCGGGTACTTCTATAATTGTTACAGCTACTAATTTTTGTGCACCAAATTATGGGTTTGATCTAGATGGTGGTGGTCACTGTAATCCACCTAATGCCCATTTTGTGCTACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCCTGTCAGTTCTAATCAGTAATGTTGCAGGTTCGGGTGATATAGTGGCAGCAAAAGTTAAGGGTTCAAGAACAGGCTGGCTTCCTATGGGTAGGAACTGGGGCCAAAATTGGCACATTAATGCTGACTTAAAGAATCAGCCGCTTTCTTTTGAGATGACTAGTGGTGATGGGGCCACCTTAACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAAGTGTATCTATTGCTCATCTTTTATTTTGGATTGCTCAACATTGGCTAGCAATGTTGGGACATTTTTGTTCGAGTTCATGTTGGACAAGTGACTACCTGATTAAGTCGTTGCAGAGCAAAGCTCTGCGATTGTGCGGTATGTTGTTGTTCACTCAATCCTTGTGAACTTGAACGGAACCAGAGAAGAAACTTGCCACGTGCAAGGCAATTTTACCAAGCAATTGTTTTGCCAGTCAAATGTTGCAGAACCTGAATCAAAGTTGTTAGAATTGTTGATTTGTAGATTAAGAATGTTCCTTTTCGAATCTGATGAAATTTAAAAACTCATCAAAAGGAGACAAATATTTCCTTGTTATTGTAGATTTTTTTGTCAAACGATCAAAACATTATCCTTATCTTGTCACCTTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579104" ref_strand="+" ref_description="SGN-U579104 Tomato 200607#2 [39 ESTs aligned] (*GB) gi|3986119|dbj|BAA34924.1| (e_value=7e-169) 1-aminocyclopropane-1-carboxylate oxidase [Lycopersicon esculentum]; (*ATH) AT1G05010.1 (e_value=3e-131)  Symbol: None | 1-aminocyclopropane-1-carboxylate oxidase / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1), Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb:X66719 (EAT1). ESTs gb:T43073, gb:T5714, gb:R90435, gb:R44023, gb:... ; (*SWP) sp|P31237|ACCO_ACTDE (e_value=9e-142) 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO; ">
      <seq>ccggggactcacaccatagagaacagataccaaacacaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcatccttctattccaagatgacaaagtcagtggtctccaattgctaaaagatggcaattggattgatgtacctcctatgaaacactctattgtcatcaacctcggcgatcagctagaggtgattactaatggaagatacaagagtattgagcacagagtgattgctcaacaagatggcactaggatgtcaatagcttccttttataatccaggaagtgatgctgtcatatttccagcaccagagttgattgagaagacagaagaggacaacaaattgaagtatccaaaatttgtgtttgaagattatatgaagttgtatgcaggtctcaaattccaggctaaggagcctaggtttgaagcaatgaaggctgtggagactactgtcaacttaggtccaatagaaactgtttgataatcttttcaagggggaatttgtttatgttttaataggacactaattaagaggattaaagaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacttgatgtgtcattgtctgttgtttggtagtgagctgtttgaggttgttctctatggggtatattgtaaagtttcctcttttactttaatgaaatctatgcttaaagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43512" stop="41222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43218" g_stop="43013" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="433" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42125" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="767" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42042" g_stop="41522" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="1288" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-U579104" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43218" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42125"/>
          <exon e_start="42042" e_stop="41522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCACTCACACCATAGAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAGGTATGCATTCCTTTTAACGTGTTGTAGCAGGTAATCGCCTTATTTTTCTAGGGTAGTACTGATTTTGTTTGAATGATTGAAGGTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAAC</genome_strand>
        <mrna_strand>CCGGGGACTCACACCATAGAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG..................................................................................GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567981" ref_strand="+" ref_description="SGN-U567981 Tomato 200607#2 [96 ESTs aligned] (*GB) gi|83743301|gb|ABC42191.1| (e_value=4e-180) plastid; (*ATH) AT4G04020.1 (e_value=1e-105)  Symbol: None | plastid-lipid associated protein PAP, putative / fibrillin, putative, strong similarity to plastid-lipid associated proteins PAP1 GI:14248554, PAP2 GI:14248556 from (Brassica rapa), fibrillin (Brassica napus) GI:4139097; contains Pfam... ; (*SWP) sp|P80471|LIPC_SOLTU (e_value=4e-176) Light-induced protein, chloroplastic OS=Solanum tuberosum; ">
      <seq>ggagagagagagagagaactagncgcggttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgaatcacttagcaggagaccattctaatttagaagccttcatatgctaatcggaatagggtcaaaaataccctaaaattatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58970" stop="61514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59274" g_stop="59805" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="559" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="755" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="61214" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="1337" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U567981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1310</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59274" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="61214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTG</genome_strand>
        <mrna_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595831" ref_strand="+" ref_description="SGN-U595831 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|83743301|gb|ABC42191.1| (e_value=7e-65) plastid; (*ATH) AT4G04020.1 (e_value=1e-26)  Symbol: None | plastid-lipid associated protein PAP, putative / fibrillin, putative, strong similarity to plastid-lipid associated proteins PAP1 GI:14248554, PAP2 GI:14248556 from (Brassica rapa), fibrillin (Brassica napus) GI:4139097; contains Pfam... ; (*SWP) sp|O99019|LIPC_SOLDE (e_value=7e-53) Light-induced protein, chloroplastic OS=Solanum demissum; ">
      <seq>aactttacccatctcctccacgaggttcccatcaaaaacagagctgcacagagcaatttcagtcaaagagttcacatacccggaaccagggggcagcagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttggtggagaagcaattggcggattctttttatggaaccaatagggggttgagtgctagcagtgagactagggcggagggggttgaactcatcacacagcttgagtcgaagaaccctaatgcagcacctactgaagccttgactctggggaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59122" stop="60688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59422" g_stop="59805" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60388" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="432" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U595831" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59422" e_stop="59805"/>
          <exon e_start="60342" e_stop="60388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCA-CAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATC</genome_strand>
        <mrna_strand>AACTTTACCCATCTCCTCCACGAGGTTCCCATCAAAAACAGAGCTGCACAGAGCAATTTCAGTCAAAGAGTTCACATACCCGGAACCAGGGGGCAGCAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGGTGGAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGGTTGAGTGCTAGCAGTGAGACTAGGGCGGAGGGGGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATGCAGCACCTACTGAAGCCTTGACTCTGGGGAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583285" ref_strand="+" ref_description="SGN-U583285 Tomato 200607#2 [52 ESTs aligned] (*GB) gi|2507174|sp|P21343|PFPB_SOLTU (e_value=0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (PFP) (6-phosphofructokinase (Pyrophosphate)) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPI-PFK); (*ATH) AT1G12000.1 (e_value=0)  Symbol: None | pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP:Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase be... ; (*SWP) sp|P21343|PFPB_SOLTU (e_value=0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum; ">
      <seq>agctccgaaagatctgattatttggcctctcaagtctcaacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgcccctagctattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcgttggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggacggtaggtggaacagcactcactgcattgatggacgtagagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcgaataaagtaaaccacactttacttctggagttgggagtagatgcataggagggaggggatatatgaattgttgtgaaatacacttgttgtactatgattttttcgagggagaacgtaagcacttatcgcttatgtttaagttgtttttcggctaatgatctatgtgaaactcgaatcttgcttttaacatatgcttgattacaagatttttaatgtggcatttgaataatataatctcttgttttaaaaatattctcttcttatgaaggtaaatgaaaaaaaatacataagtagagcctttgcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62400" stop="69689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62700" g_stop="62995" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="458" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="580" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="634" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="741" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="847" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="911" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="912" r_stop="1000" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1001" r_stop="1132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1133" r_stop="1303" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1304" r_stop="1419" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1420" r_stop="1531" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1532" r_stop="1616" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1617" r_stop="1661" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1662" r_stop="1730" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="69050" g_stop="69387" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1731" r_stop="2068" r_length="338" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U583285" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2068</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62700" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCGAAAGATCTGATTATTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTA</genome_strand>
        <mrna_strand>AGCTCCGAAAGATCTGATTATTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596181" ref_strand="+" ref_description="SGN-U596181 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|2507174|sp|P21343|PFPB_SOLTU (e_value=5e-23) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (PFP) (6-phosphofructokinase (Pyrophosphate)) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPI-PFK); (*ATH) AT4G04040.1 (e_value=5e-18)  Symbol: None | pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP:Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase be... ; (*SWP) sp|P21343|PFPB_SOLTU (e_value=3e-24) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum; ">
      <seq>gctcaacttgttcactgctactcctcactaacccccattctcttatctgctccggcgattaccatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttcagtctccgggtaccggacgatatgctgccgtatacagtgaagttcaaaacagtcgttgagatcaccctcttcctctttcttctgttctcggaagccctttcacagtctacgatggtcctacttcatctgccggcggtcatccacaggagattgcacagctctgtccttccttatacggaccaccatctgactcattggtgcctgatgattctcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62435" stop="64011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62734" g_stop="62995" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.934" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63711" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="336" r_length="74" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U596181" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62734" e_stop="62995"/>
          <exon e_start="63638" e_stop="63711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGAT</genome_strand>
        <mrna_strand>GCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTATCTGCTCCGGCGATTACCATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTCAGTCTCCGGGTACCGGACGATATGCTGCCGTATACAGTGAAGTTCAAAACAGTCGTTGAGATCACCCTCTTCCTCTTTCTTCTGTTCTCGGAAGCCCTTTCACAGTCTACGATGGTCCTACTTCATCTGCCGGCGGTCATCCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCACAGCTCTGTCCTTCCTTATACGGACCACCATCTGACTCATTGGTGCCTGATGATTCTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563663" ref_strand="+" ref_description="SGN-U563663 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|87240808|gb|ABD32666.1| (e_value=1e-55) conserved; (*ATH) AT4G22190.1 (e_value=5e-47) | Symbol: None | expressed protein | chr4:11741867-11743330 REVERSE | Aliases: T10I14.20, T10I14_20; ">
      <seq>ggaaaaactcaaccaatcttattgacaaatttcatgtctccctctatttattattcgtagggactttctcttccgttccttctttttctttcctcgtaagaacacaaaggagaaagaagaaaagagtttcttttttttcttctctctgcagaaacaaagaatggaagaccctgaaaggcttacatcatctaacagtcaaacaaccacgattagctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcttttcctcaacccaatcagctctctgccgatgagctcttctcccatggcgtcctactcccattagacctccttcaaaatgaaacaaatgttatttcgcctgaaccatccgggtcgggccgacccgaaactgaatctggggttgagccttctgctgcgatagtcaactcgtccggcggaggagcttctttcacctcctcgaagcgatggaaggatatattcaagaaaactgagaagaaagatagtaatgaggagaattgtagagagaagaaaaaggagaagaagaaagagaaaaaactggttgggggaagcaatggcgtgactggggcggagttgaacattaacatttggcccttttcgaggagtagatccgccggaaacggaggaagtaggcctcgggttacgggtggatccggattggcgacgcgaaaggtcagtagtgctccgtgttcccggagcaactccgccggtgaatccaagtcacggaaatggcccagtagtcccagtcgtggtggggttcatttgggccggagcagcccagtttggcaggtacgacggagctctatcaacccaggatccggtacccggagctccgacaacctcgtcaaaactactgaaaaagccatcagaaaagaagccccccagaaagaaagcagcaccagaaaggtagtaactaaaaaagaaggcgttgaagtccgccggaaatggtcgtcagcggcggccggaggtgggcctaaaactagagtcttaaacttgaatgtccctatgtgcattggttacaggaatcagttaggttgcagaagtgatcaaaatagtgccatccatatcgccgccgccaccggagtcggtgatgatcagaatggtagcagcacagtcaccggtgaaggggtacgtggcagtaacttatttaatctcaaaagcctatttactaaaaaagtatattaaattaaatagtggcaaatccaaagtaattacacactttttgagttatatgttagtgtatctatcattatccttttctatattctcctatgtaactttttcgtaatgtaaagtcctaacttttgacgtttgcaatgtaatatttggccctcagtttggtcaacatactgccctattgctattcaagttgaagtgtttgtataattttgcctactttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80692" stop="82718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80992" g_stop="82418" g_length="1427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1427" r_length="1427" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U563663" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80992" e_stop="82418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAACTCAACCAATCTTATTGACAAATTTCATGTCTCCCTCTATTTATTATTCGTAGGGTCTTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGGCGGCCGGAGGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAATCAGTTAGGTTGCAGAAGTGATCAAAATAGTGCCATCCATATCGCCGCCGCCACCGGAGTCGGTGATGATCAGAATGGTAGCAGCACAGTCACCGGTGAAGGGGTACGTGGCAGTAACTTATTTAATCTCAAAAGCCTATTTACTAAAAAAGTATATTAAATTAAATAGTGGCAAATCCAAAGTAATTACACACTTTTTGAGTTATATGTTAGTGTATCTATCATTATCCTTTTCTATATTCTCCTATGTAACTTTTTCGTAATGTAAAGTCCTAACTTTTGACGTTTGCAATGTAATATTTGGCCCTCAGTTTGGTCAACATACTGCCCTATTGCTATTCAAGTTGAAGTGTTTGTATAATTTTGCCTACTTTAGT</genome_strand>
        <mrna_strand>GGAAAAACTCAACCAATCTTATTGACAAATTTCATGTCTCCCTCTATTTATTATTCGTAGGGACTTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGGCGGCCGGAGGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAATCAGTTAGGTTGCAGAAGTGATCAAAATAGTGCCATCCATATCGCCGCCGCCACCGGAGTCGGTGATGATCAGAATGGTAGCAGCACAGTCACCGGTGAAGGGGTACGTGGCAGTAACTTATTTAATCTCAAAAGCCTATTTACTAAAAAAGTATATTAAATTAAATAGTGGCAAATCCAAAGTAATTACACACTTTTTGAGTTATATGTTAGTGTATCTATCATTATCCTTTTCTATATTCTCCTATGTAACTTTTTCGTAATGTAAAGTCCTAACTTTTGACGTTTGCAATGTAATATTTGGCCCTCAGTTTGGTCAACATACTGCCCTATTGCTATTCAAGTTGAAGTGTTTGTATAATTTTGCCTACTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585696" ref_strand="+" ref_description="SGN-U585696 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|118488401|gb|ABK96017.1| (e_value=5e-98) unknown; (*ATH) AT4G04210.1 (e_value=3e-95) | Symbol: None | UBX domain-containing protein, similar to XY40 protein (Rattus norvegicus) GI:2547025; contains Pfam profile PF00789: UBX domain | chr4:2030348-2031850 FORWARD | Aliases: T27D20.10, T27D20_10; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=6e-75) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410; ">
      <seq>atgttgcaatattgaaattggcacccccaaacaagacaaaataaataaaagccctagaattaggtgattagtataatcattgaatcaaatcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtgccttcattgatgcttcaaggccaagtgacaccagggcatatcaactacaaactgttggatttcctcctaaaatgctcagtgacccaacccaaacgattgagcaagcaggactggcaaattcagtggttatacaaaaattttaatgtgctctgccaaaactctcttttcgttttattatttccagatgtttcgatctatttactactggatattaatttttaatctatgtgaatctaaagctgtaccaagatagcagcaggtgttgtttaaaattcattttttcttaaactcaacgttgcacgggtattgtcccctaattatgtgtcatatggtactttnttcatttcctgtaagaacaactgctgtgtggaaatgaagtagaatggtttgtntt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85704" stop="89678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86004" g_stop="86292" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="578" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="674" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="89379" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="1300" r_length="626" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U585696" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86004" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="89379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGCAATATTGAAATTGGCACCCCCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTTGCACGGGTATTGTCCCCTAATTATGTGTCATATGGTACTTTCTTCATTTCCTGTAAGAACAACTGCTGTGTGGAAATGAAGTAGAATGGTTTGTATG</genome_strand>
        <mrna_strand>ATGTTGCAATATTGAAATTGGCACCCCCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTATAATCATTGAATCAAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTTGCACGGGTATTGTCCCCTAATTATGTGTCATATGGTACTTTNTTCATTTCCTGTAAGAACAACTGCTGTGTGGAAATGAAGTAGAATGGTTTGTNTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578026" ref_strand="+" ref_description="SGN-U578026 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|4098240|gb|AAD00251.1| (e_value=2e-153) knotted 2 protein [Lycopersicon esculentum]; (*ATH) AT1G62360.1 (e_value=5e-113) | Symbol: None | homeobox protein SHOOT MERISTEMLESS (STM), identical to homeobox protein SHOOT MERISTEMLESS (STM) SP:Q38874 from (Arabidopsis thaliana) | chr1:23062248-23065387 REVERSE | Aliases: F24O1.38, F24O1_38; (*SWP) sp|O22299|LET6_SOLLC (e_value=2e-154) Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6; ">
      <seq>tattgtgtgtttgcttttttttctgactagtagtattgctaactatgtattccattaaggatttgctgtgaaaaagcctgatatcagtaagcataaaactcgggagatcacttacacacacacacaccctcctaaaaaagagaagagagatttactgttaaacagaggtttttttccatttctttttttttttcagtgtgtgtgtgagagaaagagatgattttcataggcacaaacaaatagaaaggaacaaaatttagagtgaagaagaaagtgtgtgagagaataatggagggtggttctagtggaaatactagtacatcttgtttaatgatgatgggatatggagatcatgagaacaacaacaacaacaatggaaatggtaatggaaatggaaatggaaatgtaacaatttgtgctcctccaatgatgatgatgatgcctcctcctcctccttctttaactaacaataacaatgcagaaacaagcagcaacaacatcctttttcttcctttcatggacaacaacaacaataatcctcaagaagacaacaactcttcttcttcttccatcaagtcaaagattatggctcatcctcactaccatcgtctcttgactgcttatctcaattgtcaaaagataggagctccgccagaagtggtggcaaggctagaggaaatatgtgccacgtcagcaacaatgggccgtagcagtagtagtagtggtggtggaatcattggagaagatcctgcactagatcagttcatggaggcttattgtgagatgctgacaaaatatgaacaagaactctcaaaacccttcaaggaagccatggtttttctttcaagaattgagtgtcagttcaaagctttaactcttgcacctaattcttctcatgaatctggtgtagctttgggcgaggcaatggatagaaatggatcatctgatgaagaggttgacgtgaataacagtttcatcgacccccaggctgaggatagagagctcaaaggtcaattgttgcgtaagtacagcggttacttgggaagccttaagcaggagttcatgaagaagaggaagaaaggcaagctgcctaaggaagcaaggcaacaattggtggattggtggcttagacatattaaatggccatatccatcggaatctcagaagcttgcactagctgaatcaacgggattggaccagaagcaaataaacaactggtttatcaatcaaagaaagaggcattggaaaccatcagaagatatgcagtttgttgtgatggatgctgctcatccacattactatatggataatgttcttgctaaccatttcccaatggatatgacaccctctctcctctgaattaagatttgtcattattagtatcaaggatgtttaattaatttgcatattacttgtgtgcatgtagtagtacaaggtattgtgacacaatcaactttttattagaccaaatatataaagtgcttgtaatagatctttctattatcatctttaattatagaattaaatagtttgtacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="105071" stop="100578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104771" g_stop="104136" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103891" g_stop="103627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="904" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103626" i_stop="101934" i_length="1693">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101933" g_stop="101683" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="1155" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101682" i_stop="101264" i_length="419">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101263" g_stop="100878" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1156" r_stop="1541" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-U578026" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104771" e_stop="104136"/>
          <exon e_start="103891" e_stop="103627"/>
          <exon e_start="101933" e_stop="101683"/>
          <exon e_start="101263" e_stop="100878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTGTGTTTGCTTTTTTTTCTGACTAGTAGTATTGCTAACTATGTATTCCATTAAGGATTTGCTGTGAAAAAGCCTGATATCAGTAAGCATAAAACTCGGGAGATCACTT--ACACACACACACCCTCGTAAAAAAGAGAAGAGAGATTTACTGTTAAACAGAGGTTTTTTTCCATTTC-TTTTTTTTTTCTCAGTGTGTGTGAGAGAGAGAGATGGTTTTCATAGGCAAAAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAGGTGAAATTCACCCCCCCCCCCCAATTAACACCAACAAAAAAAAATTCATTTTTTTTTCAACAATTCAAAGATTATATTTTTTAACATGGGTTTTAGTATTTCTTGAAATTTTGATGATTTTTTCTACCTTGAAAGTGACTCTCTGCAACAATTCAATAAAAAACCCTGAAAACAAAATCATGTGTGTGAAAGGGACAGTAGCTGAAAAAACCTAGTTTTTTTTTCTTCTTTTTAACAACTGCAGATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTGGTGAGATATATATATATCAAATTTTTTTTCTTCATTTCTTAAAATGGTGACATTTATTCTTTTCAGATCCTAACTGTTTACTTGAGTTTATTCTTTTATAAATTAATGTCCTCTGCATGTGCATGTTTCCAATGATATCAGTCATTAATTAATTATTATGTACTAATAAAATAAGCTCAATTCCATATGCAGACCATTTATTTTCAATTTTTTATCAATTTACTCTACCTTCTTGTATTTCACAATGATTTTTTAAAATAGTTTTGTTTCTGTCTCAATATTCAATGAAATACATCTGCCAGGGATACTACCTGGAATTTATATTAAAGAAAAAGAATAATTATCTTATTTTGGTTCTTGTTCTACATGTTCATAATATTTGTGTGGTGCTAGTTGTAAGTGTAAACAGCAAGATATATTTGTCCCTTGTTAATCATTTCAAACTGGATGCTTGTGTATGCTGAATAAACTCAACTTGTCTTGTTCTTTAGTGAGACCCATAAAATACTCTTGATTAGATTTGGAGCTTTTATTGGATTGTATCATATAACCTACTTGATGTGTTATACTTTTGTTTAAGTCATTGGATTATGTAGTTGGTGTTTTTTCATCAATACATCTTTTTTTTTTAATTACTCTTTTGAGTTTATTTCCTTTTTTTAGGGTGCAAATATCTAGTCGAATGTATTTCGGAATTCAAAGGATTCATCTTGGTGAATACGGCTTGCTTAGTTTGATCTAATTGTATATTTGTTCATATGCTTATTGACAAGTGTTTCCTTAATCAGCTAAATTTCTTTGGAAGTTTCTTTGCTTGGACTTTTTTATTCACATAATAGACAAAACATAGCAAACTTGTGAAGTTAATAATCTATAGGTACTCAATGGAGTCTTTAATGGGATAAAGAAGACGAAATTTGTTGAGTAGCTGTTGGGTTTCTGAAGGACCCACTGATTTAAAAAACTGAATCTTGAGGAGTCTAAAAGAAGCGAGGGCTTAACTGCTTGCAATTACGAGACAACTGAAGAAATTGGCTTTTTTTGGACTTAATTGCAACATGGATAGTTACTCTCATGTGTATTTTTTGATAAGTAGTAAATAGTAACGGGTCGTTTGGTGAGAAGGATACAAATAATTAGCGTGGGATAATAAAATAGTGATGGTATTAGAATTTTGTTTTTTGGTTGTCATGCTTGGGATAACTTATCTCACTATATTCACCATAGTGATTAGACCCATGGTGGGATAAATTATCCCAGAATACTAATTTGTTCCCAACCAAACGACTCTTGATAGTTCTCAAGTATATAGGGGTAGTTAAGTTTCTCATAAAATTTATAAGCTTCTTATTCTCTGCCTAGATTTAGTGTGAGTTATGAATCGCTTTGTTGTTTTTGATTGTATTAACTCTAGCATATTTTTGTTACTCTTCTTGTGTAAGAAACTACTGAGAAGTTTCCAAATGCCTAAGAGCAAAATGATTTATGTTAGCCTGTAGTGTTGGCTAATCTAACGTGCCAAACTTTTGATCACGTCCCAAGAGAACCAGCTGAGTACTCATACTCAAAGCTTATCTCGTATCCTAGTAGCTAGTGATTTTTACTATAATGTTATTATAAGCCAAGTTATATTCTCAACTATAGTTGTTCCTTTTTTTCTTGGAGAATGGTTATGCTAATTTAAGTCTTAAAGGTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCGGTATGATCCTCCTTCATTCCTATTAATAACTTCACTTCTTGACTCTATACACTCTGTTAATTTCACCTTATGTCCCTTAGTAATCCATACAAAAAGAATGACACTCTTAAATTTTAAAACATAATGTTACGGGTGCACGAAGTTTTCGCTTGGTCTTCATTCTGAATTAAAGCTAATATCACTTAAATTAGAAAAGTAAAAGTATTGCTTTTCTAAATTGTTAAATAAATCAGTCCTTAGCTCAATATCTACATATTAATTCTACTCTACTAGGATGATCACTTCATTGTAAGACCATATATTGTTTTTCGCTTGCCTTATCAGACAAGGTTGTGATGTGTGTCCATCTTATATACAATAATGACAATGCATAGTTATTTTACGCGGTCAAGTTACATTGCGCGATTCTTGGTTTACAGGAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGTTTGTACTTGCT</genome_strand>
        <mrna_strand>TATTGTGTGTTTGCTTTTTTTTCTGACTAGTAGTATTGCTAACTATGTATTCCATTAAGGATTTGCTGTGAAAAAGCCTGATATCAGTAAGCATAAAACTCGGGAGATCACTTACACACACACACACCCTCCTAAAAAAGAGAAGAGAGATTTACTGTTAAACAGAGGTTTTTTTCCATTTCTTTTTTTTTTTCAGTGTGTGTGTGAGAGAAAGAGATGATTTTCATAGGCACAAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG....................................................................................................................................................................................................................................................ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGTTTGTACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603118" ref_strand="+" ref_description="SGN-U603118 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=8e-56) copia; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-23) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cctagagttttgtgaacattgtgtttttggaaaactacatcgcaacaagtttccaaaggccattcatagaacaaaaggcacacttgattatatccattctgattgctggggtccatgccgtgttgagtctttgggaggctgcagattttttgtgtccattattgatgactactcaaggatgacttgggtgtacatgatgaagcataaaagtgaagccttccagaagtttaaggagtggaaaattttgatggaaaatcaaacagggaagaagatcaagaggttgcgaactgataatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="107820" stop="108718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108120" g_stop="108418" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U603118" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108120" e_stop="108418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</genome_strand>
        <mrna_strand>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTTAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575023" ref_strand="+" ref_description="SGN-U575023 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=0) copia; (*ATH) AT4G23160.1 (e_value=3e-26) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-68) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>ganggnntgctcgacatcgtacagtcagaaatacaccacagcagaacggtgtagctgagcggatgaatcaaacacttctggagagagcaaggtgcatgctctctaatgctgggctagatagaagattctgggcagaagcggttagtacagcttgctacttgattaaccgcggaccacatacaggcatacagtgcaagacacctatggagatgtggtcagaaaaagctgctgattattcaaatctgaaagcttttggttgtatggcctactatcacgtcagtgaaggtaagttagaaccaagagctaaaaagggagtatttgtgggctacggagatggagtgaaaggtttcagaatctggtctccagcagaaaagagggttattatgagcaggaacgttgtctttgatgaaagttctctgcttagaaccattgtgaagcctacaactacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgactcagccggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="108162" stop="109866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108461" g_stop="109566" g_length="1106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1106" r_length="1106" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U575023" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1106</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108461" e_stop="109566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGATTGCTCGACATCGCACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGTATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGT</genome_strand>
        <mrna_strand>GANGGNNTGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGAAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTATGGCCTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604002" ref_strand="+" ref_description="SGN-U604002 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=2e-152) copia; (*ATH) AT4G23160.1 (e_value=1e-36) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=4e-86) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gggtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="109264" stop="110672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109563" g_stop="110372" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U604002" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109563" e_stop="110372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599888" ref_strand="+" ref_description="SGN-U599888 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaaaaagcctggtcatattccagaatgtcaatttagagagctcctcaaatattggaattctgaaaaattcaagaaaatgtctgaaacaaatgcaaagaatcgaaagaaaatgatgaatccacaaactactggcaaaaagagtttcgctttagttcgtaataagctggagaaagataaggagacagtatcatctaaggatctctttgtggttacaagaacaagaaaacctggtcgtttgtacaaggcctcaaatgaagatactactataggctgaaatggaggaaattgaaaaacaaataagcataaatggtgagtatgttgatgcattttcaagcgtcatgggtcctgaacatccgggacgtctaagactatatggcgcaggagttacaaagactactttgaaaaaaaaagttggcaattcggaatcaactttaagtgcaacaactgatggaatgcagcaaatgcaagagaggatgcagaaaatggagaaacagatggaggaacaaaagaaaattgtgcgacaagaagttattgcagatgttattgcacaacttaagcatgcaggattaattgatcctaatatattggcaacattgtcgactccttcaccaagagaatctacttttgtttaaggggctaaacaaggtgatgaaatcgaagaaagggatgaaagcagtagtgaagacttgacataggagctgaagtatatattgatgtaaactttattgatgttctagaaatcatatatttttgaagattgaaaattctatggcatggtgttcaccttttttggattctataaaaagatttgtatattttggatcttgaattctaattaaggtaatgaacatttattctcgttaacgaaaaaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="126124" stop="128921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126423" g_stop="126495" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126496" i_stop="126652" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126653" g_stop="126744" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="166" r_length="93" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126745" i_stop="126837" i_length="93">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126838" g_stop="126937" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="266" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126938" i_stop="127020" i_length="83">
            <donor d_prob="0.229" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127021" g_stop="127399" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="645" r_length="379" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127400" i_stop="128376" i_length="977">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128377" g_stop="128550" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="819" r_length="174" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-U599888" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126423" e_stop="126495"/>
          <exon e_start="126653" e_stop="126744"/>
          <exon e_start="126838" e_stop="126937"/>
          <exon e_start="127021" e_stop="127399"/>
          <exon e_start="128377" e_stop="128550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAGGTAAAAATGTAGTTCAGAATCTCAATTTTTTGAATAAGTAGAATTTGTATTTGGTACTTTATTGTAATATTTGCACCTTCTTTCTTCATTTATTGTGATAGTCACATGCATTTTACAAGACACCTTCGATTAACATTACTGATTCATTTCTTTGCAAAAAATGTCTGAAACAAATGCAAAGAATCGAAA-AAAATGATGAATCCACACACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTGGTGAGTTCTCTTATATATTTTTTTTAATGAAATTTTCTTTTGGATCTCTTCCGGTGTGAGTTTATTTTTTTATATATATTTCAATTTGACTAGGAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACTTGGTCGTTTGTACAAGGTCTCAAATGAAGATACTACTAGTAAAATTGTATGTGCCTGTCTATTTTTTTTATTGAGATCAATTATTTATTTCATAAGATTGTGTTTGTTGGATATGCTTTGATAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTAATGCATTTTCAAGCGTCATGGATCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAGTTTGGCAATTTGGAATCAACTTTAAGTGCAACAACTGATGGAATGTAGCAAATGAAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGAAGGATTAATTGATCCTAACATATTGACAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTCTGTTCAAGGGGCTAAACAAGGTTGGTATCGCTAATTCTATGTTTTGATTGATATTTGTTGTTGCTACTTGCTATAGAATTAGAATAAAATAGTATGCTATTGATCTAAGGAAGTTGGGGAAAAGTTAGGCAGAGGATCAGTAAATGCCTGATTCATGAGTATAATTAATGTCTGAGTTGCTGCTTGTTCTCTGATAGTCTGAGTTGCTGCTTGTAGTCTGGTTCATGAGTTTTCTGGTGCTGCTTGTAGCCTAGTAGAGGACCAGTTGTTAGATTCATGATTTTTTTGATACTTGCTGCTTGTAGTCTGGTTTCTTGTGGTTTCTTCTTTATGTTAATTAAACATGTCTCTTGTAGCATGATAGTGTTGTTTCTACTGCTTGTAGTTTGGACTCTTGATTCTGCTGCTGGTCTCTTGTTTCTGCTGCTGGTTTCTTGTAGCATTATAGTGTTGAATCCTAGCTTCACGATTATGTTTAGTCGAGCCAACGTAGTAGCTAATTGCTGAATGTATAGTGGTCTGGTCTCTTGATTCTGCTGCTTGTAGAAGTTTAAATGCAGCTAGCAGTTTAATGTTATTGGCATGTGTAGTAGTCTGGTCTCTTGATTCTGCTGCTGCTTGTAGAAGTTTAAATACAGCTAGCAGTTGAATGTTATTGGCATGTGTAGTAGTTTGGTCTCTTGTTTCTGCTGCTGCTTGTAGAAGTTTGAATGCAGCTAGCAGTTGAATGTTATTGGCATGCATAGTAGTCTGGTCTCTTGTTTCTACTGCTACTTGTGGAAGTTTGAATGCAGCTAGCAGTATAGTAGTCTGGTGTCTTTTATTTTGTTGCTGCTTGTAGCAGTTGAATGTTATTGAATGCAACAAGCAGTTCAATGTCTCTTGATTCTGTTTAATGTCTCTTGATTCTGCTGCTGCTAATGCATGGTTGTAATATGTTAATTTCACAGATTTGAGGTTTGCTAAATTATTTATATTTTTTTCTGATTATATGTAGGTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTGGATGCTATAAAAAGATTTGTATATTTT</genome_strand>
        <mrna_strand>GAAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG.............................................................................................................................................................AAAATGTCTGAAACAAATGCAAAGAATCGAAAGAAAATGATGAATCCACAAACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG.............................................................................................GAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAAGGCCTCAAATGAAGATACTACTA...................................................................................TAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGCAATTCGGAATCAACTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTGATCCTAATATATTGGCAACATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTTAAGGGGCTAAACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGGTGTTCACCTTTTTTGGATTCTATAAAAAGATTTGTATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566031" ref_strand="+" ref_description="SGN-U566031 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|79368730|ref|NP_176423.3| (e_value=2e-90) unknown; (*ATH) AT1G62330.1 (e_value=2e-92)  Symbol: None | similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g11990.1); similar to putative growth regulator [Gossypium hirsutum] (GB:AAT64033.1); contains InterPro domain Hypothetical plant protein (InterPro:IPR004348) | chr1:2305055... ; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=6e-22) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910; ">
      <seq>aagaaccaaaaaagagaagcaaacctttaaaagataaaaaaattctatgacttctcggagcaattctttttctaatttctcagaatcatcgtacgaatacgatgataaggattgttccaccgtcacgacttcggatcgggatgagcccctgaatccgggtcataggaacaactcgtttaacgggttattgggtttcacgttcgggtccaagaagatgaggaagaagaaacccttttgtcaggaaaaagcaattgtcgggttggctctattggtgatcggttttgtcgggatgaattggtggatgctttcccggatccagaactcgggtcgggcttctcaggttgagttcaggttcttggaagataattcctccactctatcaattcgggaagaactgctaaggcttgggcttggcgaagagagaaagcctcagaaaacaatctacgcacgattgctggctaaagctgctcattccttagctgagggacagaaaaaatccgagccaaaagatttgtgggctgaaccgtattttgttgcttcctcttggaaaccttgtgctgagcagcgtcaatggctacctagtgagggaaaaaatggttacattattgtcactgcaaatggtgggataaatcagcagcgagtagctgtctgcaatattgttgctattgcaagattactcgatgcaaccttggttcttccgaaatttctgtacagtagtgtttggaaagatgtgagccagtttggcgagatctaccaggaggagcatttcattgactacctgaaacctgatattcgtatagttagagaacttcctcaggagttgcagtcattagatctagaggccattggcagtttggtgacagatgcagatgttgtaaaagaagcaaagccaggtttctacaagaaatatattcttcctattttacataaaaacggagttgttcattttcttggatttgggaatcgattggcatctgacccgttaccacctcaggtgcaggtaaacccatcgaacttgatattaggcttccttgttgatttctcaatttttcatattatcttctcatttagtctgattccataatttctaccttggttcctgatttggggacttcatctagagacttcgatgcagatgtaattttcatgctctgaaatttgttccaaagatagaagaaactggagctttacttatacggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="139878" stop="136523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139578" g_stop="139191" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139190" i_stop="138780" i_length="411">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138779" g_stop="138684" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="484" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138683" i_stop="138604" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138504" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="584" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138503" i_stop="138419" i_length="85">
            <donor d_prob="0.463" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138418" g_stop="138357" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="646" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138356" i_stop="138212" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="138211" g_stop="138123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="735" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="138122" i_stop="137371" i_length="752">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137370" g_stop="137250" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="856" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="137249" i_stop="137169" i_length="81">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="137168" g_stop="136823" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="1202" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-U566031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1202</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139578" e_stop="139191"/>
          <exon e_start="138779" e_stop="138684"/>
          <exon e_start="138603" e_stop="138504"/>
          <exon e_start="138418" e_stop="138357"/>
          <exon e_start="138211" e_stop="138123"/>
          <exon e_start="137370" e_stop="137250"/>
          <exon e_start="137168" e_stop="136823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCAAAAAAGAGAAGCAAACCTTTAAAAGATAAAAAAATTCTATGACTTCTCGGAGCAATTCTTTTTCTAATTTCTCAGAATCATCGTACGAATACGATGATAAGGATTGTTCCACCGTCACGACTTCGGATCGGGATGAGCCCCTGAATCCGGGTCATAGGAACAACTCGTTTAACGGGTTATTGGGTTTCACGTTCGGGTCCAAGAAGATGAGGAAGAAGAAACCCTTTTGTCAGGAAAAAGCAATTGTCGGGTTGGCTCTATTGGTGATCGGTTTTGTCGGGATGAATTGGTGGATGCTTTCCCGGATCCAGAACTCGGGTCGGGCTTCTCAGGTTGAGTTCAGGTTCTTGGAAGATAATTCCTCCACTCTATCAATTCGGGTATGTTTGAATCACTCTTTTATGTTAATTCTTGAATACTTCCGCAAAAAAGTACAACTAATGTTGAAACTTAGTCGAAAGCTGGGTTATGGATATGAATTTTGTTAAAGATGGTACTTCAGATATTGTCAATCATCTCAATATTTAGCTGTGAAGTTGAAAAAATGAATCTTGAATGTTAAGCAACTAGATATATGTTACTTATTCGACAAACTGTAAACTTAACTTCTCTTTCTCTAAATTGTTTAGTATTGGAGTGAAATAGGGGCAACTATATGGATATAGAGGATTCATATGGCTGACCCGACTAATTTAGGAATGAGGCTTAGTTGATAGTTGAAGTATGAATTGATTCACTGAGTTGGAGGTCTTTTGATACATATGGAGTAAATGTTATTTTTGATATGGTAGGAAGAACTGCTAAGGCTTGGGCTTGGCGAAGAGAGAAAGCCTCAGAAAACAATCTACGCACGATTGCTGGCTAAAGCTGCTCATTCCTTAGCTGAGGTACTTTTTGTTTCTACAAGGAAGTGAGTAGATCTATTTAGTTGGTTTTACTTTGATAATGTGAGGTCGACACATTGCAGGGACAGAAAAAATCCGAGCCAAAAGATTTGTGGGCTGAACCGTATTTTGTTGCTTCCTCTTGGAAACCTTGTGCTGAGCAGCGTCAATGGCTACCTAGTGGTCTCTCTCTCTCTCCCTCTTCCTCTCTTCATGCATGTTACGTTTCAGGTAGTTAACCTGCTTCTTATGTGGCTAAAATTTTCAGAGGGAAAAAATGGTTACATTATTGTCACTGCAAATGGTGGGATAAATCAGCAGCGAGTAGCTGTAAGTTATGTCTTCTGCTGTGACATTATTTGTTCCATATTTCTTTAGTTTAGCTTGCCAAGCTAAGGACAAAGGTTCCGTGCTACTATTATATGAAAGCTATGGTCTTTTTTCTTAACTAACACATTTTTTCCTTGCACAACAGGTCTGCAATATTGTTGCTATTGCAAGATTACTCGATGCAACCTTGGTTCTTCCGAAATTTCTGTACAGTAGTGTTTGGAAAGATGTGAGGTAAAAACTTACTACTTACTGTCAATTTCACTTCTTTCTTTCCTTTTTCCTGTTGTACAATAGGGATTGCAAAATAATATAGCAAAACTGTCATAATAGTGGGATCTTTGATTACAGATTCACAACATCTTTGATATACTATTTTGTAACTTCACTTGCGAATTCTTGTTGTTGACTGGAAACACGTACTAGTTGAATAGTATTTCATTTAATTCTTTTCCATGTTCTTTCCATAACTAATTAAACAACTAAACTGTCTTAGTCTTGAAATTCTTTAACTCAATAATTGGGAATTTGTGATGTAACACTGATTTCTCTTTGGTCGCTTGTCTACACAACATTAGCTCTCCAATACTTTGTGATTAAACCAAAGGTTCGCCTGGCTTTTCTTTGTTGAATCTACTTTAGAGATGCAAGTATGTGATAGTTCTTTTCCTGAACTCTTCCCCAATGTGCTTTGAGCTATATAAGTATCTCCATATGCGTTTTTAACTGCTGTTGAACCTCCCTTGCATTTGCAACTAGCTATGCCCCGTCCAAAAAAAATTATATGTTATCTTGGAAGTGTTTGCATCAGTAACTTTTAGTATGATCTTCATCAAATAGAAATTAGAACTTTAAATAAGATATTTATGTGCCTTCCCGATTTTGCTTCCTTCGAACTTGTTTCCTTTTCTTGCTAATCTAAAACATTTGATACCTTATGAGTTCCTTATATTGAAGATTGATAGATGTAACTTATAATTTCTTAGCCAGTTTGGCGAGATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTATAGTTAGAGAACTTCCTCAGGAGTTGCAGTCATTAGATCTAGAGGCCATTGGCAGTTTGGTAAGACTCTCATCTAGATAAATCATTTTGAATATGATCATGTGAAGAAACTAGTTTCTGACAATCTTGAAATAAATCCAGGTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAGGTAAACCCATCGAACTTGATATTAGGCTTCCTTGTTGATTTCTCAATTTTTCATATTATCTTCTCATTTAGTCTGATTCCATAATTTCTACCTTGGTTCCTGATTTGGGGACTTCATCTAGAGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGTTCCAAAGATAGAAGAAACTGGAGCTTTACTTATACGGAGA</genome_strand>
        <mrna_strand>AAGAACCAAAAAAGAGAAGCAAACCTTTAAAAGATAAAAAAATTCTATGACTTCTCGGAGCAATTCTTTTTCTAATTTCTCAGAATCATCGTACGAATACGATGATAAGGATTGTTCCACCGTCACGACTTCGGATCGGGATGAGCCCCTGAATCCGGGTCATAGGAACAACTCGTTTAACGGGTTATTGGGTTTCACGTTCGGGTCCAAGAAGATGAGGAAGAAGAAACCCTTTTGTCAGGAAAAAGCAATTGTCGGGTTGGCTCTATTGGTGATCGGTTTTGTCGGGATGAATTGGTGGATGCTTTCCCGGATCCAGAACTCGGGTCGGGCTTCTCAGGTTGAGTTCAGGTTCTTGGAAGATAATTCCTCCACTCTATCAATTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACTGCTAAGGCTTGGGCTTGGCGAAGAGAGAAAGCCTCAGAAAACAATCTACGCACGATTGCTGGCTAAAGCTGCTCATTCCTTAGCTGAG................................................................................GGACAGAAAAAATCCGAGCCAAAAGATTTGTGGGCTGAACCGTATTTTGTTGCTTCCTCTTGGAAACCTTGTGCTGAGCAGCGTCAATGGCTACCTAGTG.....................................................................................AGGGAAAAAATGGTTACATTATTGTCACTGCAAATGGTGGGATAAATCAGCAGCGAGTAGCT.................................................................................................................................................GTCTGCAATATTGTTGCTATTGCAAGATTACTCGATGCAACCTTGGTTCTTCCGAAATTTCTGTACAGTAGTGTTTGGAAAGATGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTTGGCGAGATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTATAGTTAGAGAACTTCCTCAGGAGTTGCAGTCATTAGATCTAGAGGCCATTGGCAGTTTG.................................................................................GTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAGGTAAACCCATCGAACTTGATATTAGGCTTCCTTGTTGATTTCTCAATTTTTCATATTATCTTCTCATTTAGTCTGATTCCATAATTTCTACCTTGGTTCCTGATTTGGGGACTTCATCTAGAGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGTTCCAAAGATAGAAGAAACTGGAGCTTTACTTATACGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599274" ref_strand="+" ref_description="SGN-U599274 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328706|emb|CAO22724.1| (e_value=5e-12) unnamed; (*ATH) AT4G22130.1 (e_value=3e-12)  Symbol: None | similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:At3g14350.2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:At1g53730.1); similar ... ; (*SWP) sp|Q6R2J8|SRF8_ARATH (e_value=3e-11) Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8; ">
      <seq>gccccaatgtctgaagttgtgcaagcactggttcggttaatgcaaagagcaagtgtggtcaaaaggcgatccagtgatgaatcagctttcacatacaagactccggatcatgagacggttgacatgccatagataaaacatacacgacgaagcagcctttgcaattttgtaagtaacttctgtgaaggtcaagagtaactgtggcagatgaaactgggaggtgtcaataccagggacattaaatatgtaattatttttcacatcttcgtcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="145959" stop="145087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145660" g_stop="145387" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-U599274" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145660" e_stop="145387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAATGCAAAGAGCAAGTGTGGTCAAAAGGCGATCCAGTGATGAATCAGCTTTCACATACAAGACTCCGGATCATGAGACGGTTGACATGCCATAGATAAAACATACACGACGAAGCAGCCTTTGCAATTTTGTAAGTAACTTCTGTGAAGGTCAAGAGTAACTGTGGCAGATGAAACTGGGAGGTGTCAATACCAGGGACATTAAATATGTAATTATTTTTCACATCTTCGTCGTTT</genome_strand>
        <mrna_strand>GCCCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAATGCAAAGAGCAAGTGTGGTCAAAAGGCGATCCAGTGATGAATCAGCTTTCACATACAAGACTCCGGATCATGAGACGGTTGACATGCCATAGATAAAACATACACGACGAAGCAGCCTTTGCAATTTTGTAAGTAACTTCTGTGAAGGTCAAGAGTAACTGTGGCAGATGAAACTGGGAGGTGTCAATACCAGGGACATTAAATATGTAATTATTTTTCACATCTTCGTCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4225" PGL_stop="2891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4225" e_stop="4032"/>
            <exon e_start="3089" e_stop="2891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="4225" e_stop="4032" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4031" i_stop="3090" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3089" e_stop="2891" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4225" stop="4032"/>
              <exon start="3089" stop="2891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCATTCAGCTCCTTTAGAGGTCAAGAAATGATAACATTGAGACCATCAAATCCTGAGGCACTACCTGCTGGCACCTCATATACATTCTTGGAGCTGCACTGGTTGGAAGGCTGCAGTTTGGCCTTTCTTATTACCATATACCTGCTCTGGCAGCTGAATGAGCCAGTATTTTCTGATCGAGCCGTTAAACAG : GCAATAATTGCATTGAAGAAGGGGGCACAACTTTTGAAGCATGGCAGAAGAGGGAAGCCCAACTTCTATTCTCTTAAGGTTATCCGCGGTAAATTCTTAATGAAACATATATCATTGCCTTTTAACCAAGAAAGTCGTCATAACAAATAATATAATGGTCGGAATTTTGTACTCTCTGGCATAACTGAATAACATATTG</gDNA_template>
            <first_frame> H  H  S  A  P  L  E  V  K  K  *  *  H  *  D  H  Q  I  L  R  H  Y  L  L  A  P  H  I  H  S  W  S  C  T  G  W  K  A  A  V  W  P  F  L  L  P  Y  T  C  S  G  S  *  M  S  Q  Y  F  L  I  E  P  L  N  R :   Q  *  L  H  *  R  R  G  H  N  F  *  S  M  A  E  E  G  S  P  T  S  I  L  L  R  L  S  A  V  N  S  *  *  N  I  Y  H  C  L  L  T  K  K  V  V  I  T  N  N  I  M  V  G  I  L  Y  S  L  A  *  L  N  N  I  L </first_frame>
            <second_frame>  T  I  Q  L  L  *  R  S  R  N  D  N  I  E  T  I  K  S  *  G  T  T  C  W  H  L  I  Y  I  L  G  A  A  L  V  G  R  L  Q  F  G  L  S  Y  Y  H  I  P  A  L  A  A  E  *  A  S  I  F  *  S  S  R  *  T   : G  N  N  C  I  E  E  G  G  T  T  F  E  A  W  Q  K  R  E  A  Q  L  L  F  S  *  G  Y  P  R  *  I  L  N  E  T  Y  I  I  A  F  *  P  R  K  S  S  *  Q  I  I  *  W  S  E  F  C  T  L  W  H  N  *  I  T  Y   </second_frame>
            <third_frame>   P  F  S  S  F  R  G  Q  E  M  I  T  L  R  P  S  N  P  E  A  L  P  A  G  T  S  Y  T  F  L  E  L  H  W  L  E  G  C  S  L  A  F  L  I  T  I  Y  L  L  W  Q  L  N  E  P  V  F  S  D  R  A  V  K  Q  :  A  I  I  A  L  K  K  G  A  Q  L  L  K  H  G  R  R  G  K  P  N  F  Y  S  L  K  V  I  R  G  K  F  L  M  K  H  I  S  L  P  F  N  Q  E  S  R  H  N  K  *  Y  N  G  R  N  F  V  L  S  G  I  T  E  *  H  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4223" stop="4032"/>
                    <exon start="3089" stop="2940"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFSSFRGQEMITLRPSNPEALPAGTSYTFLELHWLEGCSLAFLITIYLLWQLNEPVFSDRAVKQAIIALKKGAQLLKHGRRGKPNFYSLKVIRGKFLMKHISLPFNQESRHNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="26223" PGL_stop="26703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26223" e_stop="26703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="26223" e_stop="26703" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26223" stop="26703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGACATTCTGTTCTTGAAATTTTTTTGAAGATCTCTGTTTTCCTGTTCTTGAAAAATCTTCATACAAAGTTGTTTCTTTTTCAATTTCCAACAACCCAAATCAAAGATTGCTAATCTGCTTTCAAAGTTTATTCCTTTTCTCTTTTTATGGGAATTCCCTTTCAAGAATAGCAGCAAAGACACTCCATTCATCTTCAATTGGATCCAATATTCCATTTATTGAAACTCTGCTGCCAAAGCTCTGTTTTCTTTTTCTTTTCGTGTGATTTAACAGTCAGAATCAGAGAAATAATGTGGGGCGCCGTTCAATTGGGAGTATTGGCGGCCTTTCTTGTACTCTTTGTCCCTGTCGGTATGGCTGGTTGGCACTTGAGTCGCAACAAAATGTTATTTTTCAGCTGTGCCCTCTTTATTACCCTTGCTGTTTGTGTTCATTTGACCCCTTATTTCCCTTCAGTCTCCTCTATGCTTTCTTCACCA</gDNA_template>
            <first_frame> S  T  F  C  S  *  N  F  F  E  D  L  C  F  P  V  L  E  K  S  S  Y  K  V  V  S  F  S  I  S  N  N  P  N  Q  R  L  L  I  C  F  Q  S  L  F  L  F  S  F  Y  G  N  S  L  S  R  I  A  A  K  T  L  H  S  S  S  I  G  S  N  I  P  F  I  E  T  L  L  P  K  L  C  F  L  F  L  F  V  *  F  N  S  Q  N  Q  R  N  N  V  G  R  R  S  I  G  S  I  G  G  L  S  C  T  L  C  P  C  R  Y  G  W  L  A  L  E  S  Q  Q  N  V  I  F  Q  L  C  P  L  Y  Y  P  C  C  L  C  S  F  D  P  L  F  P  F  S  L  L  Y  A  F  F  T  </first_frame>
            <second_frame>  R  H  S  V  L  E  I  F  L  K  I  S  V  F  L  F  L  K  N  L  H  T  K  L  F  L  F  Q  F  P  T  T  Q  I  K  D  C  *  S  A  F  K  V  Y  S  F  S  L  F  M  G  I  P  F  Q  E  *  Q  Q  R  H  S  I  H  L  Q  L  D  P  I  F  H  L  L  K  L  C  C  Q  S  S  V  F  F  F  F  S  C  D  L  T  V  R  I  R  E  I  M  W  G  A  V  Q  L  G  V  L  A  A  F  L  V  L  F  V  P  V  G  M  A  G  W  H  L  S  R  N  K  M  L  F  F  S  C  A  L  F  I  T  L  A  V  C  V  H  L  T  P  Y  F  P  S  V  S  S  M  L  S  S  P </second_frame>
            <third_frame>   D  I  L  F  L  K  F  F  *  R  S  L  F  S  C  S  *  K  I  F  I  Q  S  C  F  F  F  N  F  Q  Q  P  K  S  K  I  A  N  L  L  S  K  F  I  P  F  L  F  L  W  E  F  P  F  K  N  S  S  K  D  T  P  F  I  F  N  W  I  Q  Y  S  I  Y  *  N  S  A  A  K  A  L  F  S  F  S  F  R  V  I  *  Q  S  E  S  E  K  *  C  G  A  P  F  N  W  E  Y  W  R  P  F  L  Y  S  L  S  L  S  V  W  L  V  G  T  *  V  A  T  K  C  Y  F  S  A  V  P  S  L  L  P  L  L  F  V  F  I  *  P  L  I  S  L  Q  S  P  L  C  F  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26395" stop="26703"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQRHSIHLQLDPIFHLLKLCCQSSVFFFFSCDLTVRIREIMWGAVQLGVLAAFLVLFVPVGMAGWHLSRNKMLFFSCALFITLAVCVHLTPYFPSVSSMLSSP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26241" stop="26489"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFEDLCFPVLEKSSYKVVSFSISNNPNQRLLICFQSLFLFSFYGNSLSRIAAKTLHSSSIGSNIPFIETLLPKLCFLFLFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27375" PGL_stop="30716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27375" e_stop="27643"/>
            <exon e_start="30016" e_stop="30716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.822" acc_prob="0.977" e_score="0.996"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="27375" e_stop="27643" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.822" acc_prob="0.977">
            <gDNA_intron_boundary i_start="27644" i_stop="30015" i_length="2372"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="30016" e_stop="30716" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27375" stop="27643"/>
              <exon start="30016" stop="30716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTCTATGTTGAATACAGATGAGAAGCAAGAGAAGATGAGTGATGTGATGTGGAGAGCTTATACTGATGAGCTTTATAGCAGTAAGCTGCTGCGACAATCTGGTGGACCACTTTTGTTGCTGGACATTCATGCATTGAGTAATAATTGTGGAACTCATTGTACTGCTGACGGAATGCATTATCACAGAGTTGTATATGAAGCTGCAGTTCATGTAATGCTAAATGGATTGCTTATAGAATCTAATCAGAAGCTGTAATGGAGCCAGG : GTTACCGTATCCTCCTCCAGTTATGTGTCCACCAACACCAACAGTTGGGCAAACACCAGCTGGGAAGGCATGAACTTTGCTTTTCTCCCAAATTCTGTAGTAAAGTTCGCCTAGAAGTGCACCAGCTTGGACCCAAGCAGTTTCATTTTGGATATCTACATCAATTGAATGCAGGTTAGACATGTCAAGAAGAACAAAACTGATGTTGGAGACATAAGAAATGCCTTCGTAGTCATGGCCTCCACTTCGGATCTTTAGGTACTTGTCAGTTTTCCTGCAGCAAGTGACAGCAACCTGAACATGGGATTCTTGCAACGGAGTGAAAATAATGTCGGGTTTTGGAGTGGTTGATCTATTGAACCTCTGGTTTCTGATATAGTGTTGTAGCACAGACTTATATGAGGAGTTGTTTGGAGTGTACACTCTTGACAGTATGTGGTCAGATGGACGTGAATGTTCGGATAAGCACTGAAGGAAGCTCAGGTATGATAGAGTTGAGGCTGACAACGGAACAAAATGGATAACAAAAAGAAATGAAGAAATGGTTAGAAAGAGAGAGTTCTCCATATCGAAACCCTGGTTTCCTTGTTTTCTTTTATTTTTCCGCTATGGGGACATGGAGAGTTAAGCTATTCCAGGCCAACTAGAAATATAACAAGAGAAGATGCCAGCAAATCAGGTGTAATACAAAGTTCATCAAG</gDNA_template>
            <first_frame> K  L  Y  V  E  Y  R  *  E  A  R  E  D  E  *  C  D  V  E  S  L  Y  *  *  A  L  *  Q  *  A  A  A  T  I  W  W  T  T  F  V  A  G  H  S  C  I  E  *  *  L  W  N  S  L  Y  C  *  R  N  A  L  S  Q  S  C  I  *  S  C  S  S  C  N  A  K  W  I  A  Y  R  I  *  S  E  A  V  M  E  P  G :   L  P  Y  P  P  P  V  M  C  P  P  T  P  T  V  G  Q  T  P  A  G  K  A  *  T  L  L  F  S  Q  I  L  *  *  S  S  P  R  S  A  P  A  W  T  Q  A  V  S  F  W  I  S  T  S  I  E  C  R  L  D  M  S  R  R  T  K  L  M  L  E  T  *  E  M  P  S  *  S  W  P  P  L  R  I  F  R  Y  L  S  V  F  L  Q  Q  V  T  A  T  *  T  W  D  S  C  N  G  V  K  I  M  S  G  F  G  V  V  D  L  L  N  L  W  F  L  I  *  C  C  S  T  D  L  Y  E  E  L  F  G  V  Y  T  L  D  S  M  W  S  D  G  R  E  C  S  D  K  H  *  R  K  L  R  Y  D  R  V  E  A  D  N  G  T  K  W  I  T  K  R  N  E  E  M  V  R  K  R  E  F  S  I  S  K  P  W  F  P  C  F  L  L  F  F  R  Y  G  D  M  E  S  *  A  I  P  G  Q  L  E  I  *  Q  E  K  M  P  A  N  Q  V  *  Y  K  V  H  Q  </first_frame>
            <second_frame>  N  S  M  L  N  T  D  E  K  Q  E  K  M  S  D  V  M  W  R  A  Y  T  D  E  L  Y  S  S  K  L  L  R  Q  S  G  G  P  L  L  L  L  D  I  H  A  L  S  N  N  C  G  T  H  C  T  A  D  G  M  H  Y  H  R  V  V  Y  E  A  A  V  H  V  M  L  N  G  L  L  I  E  S  N  Q  K  L  *  W  S  Q   : G  Y  R  I  L  L  Q  L  C  V  H  Q  H  Q  Q  L  G  K  H  Q  L  G  R  H  E  L  C  F  S  P  K  F  C  S  K  V  R  L  E  V  H  Q  L  G  P  K  Q  F  H  F  G  Y  L  H  Q  L  N  A  G  *  T  C  Q  E  E  Q  N  *  C  W  R  H  K  K  C  L  R  S  H  G  L  H  F  G  S  L  G  T  C  Q  F  S  C  S  K  *  Q  Q  P  E  H  G  I  L  A  T  E  *  K  *  C  R  V  L  E  W  L  I  Y  *  T  S  G  F  *  Y  S  V  V  A  Q  T  Y  M  R  S  C  L  E  C  T  L  L  T  V  C  G  Q  M  D  V  N  V  R  I  S  T  E  G  S  S  G  M  I  E  L  R  L  T  T  E  Q  N  G  *  Q  K  E  M  K  K  W  L  E  R  E  S  S  P  Y  R  N  P  G  F  L  V  F  F  Y  F  S  A  M  G  T  W  R  V  K  L  F  Q  A  N  *  K  Y  N  K  R  R  C  Q  Q  I  R  C  N  T  K  F  I  K </second_frame>
            <third_frame>   T  L  C  *  I  Q  M  R  S  K  R  R  *  V  M  *  C  G  E  L  I  L  M  S  F  I  A  V  S  C  C  D  N  L  V  D  H  F  C  C  W  T  F  M  H  *  V  I  I  V  E  L  I  V  L  L  T  E  C  I  I  T  E  L  Y  M  K  L  Q  F  M  *  C  *  M  D  C  L  *  N  L  I  R  S  C  N  G  A  R  :  V  T  V  S  S  S  S  Y  V  S  T  N  T  N  S  W  A  N  T  S  W  E  G  M  N  F  A  F  L  P  N  S  V  V  K  F  A  *  K  C  T  S  L  D  P  S  S  F  I  L  D  I  Y  I  N  *  M  Q  V  R  H  V  K  K  N  K  T  D  V  G  D  I  R  N  A  F  V  V  M  A  S  T  S  D  L  *  V  L  V  S  F  P  A  A  S  D  S  N  L  N  M  G  F  L  Q  R  S  E  N  N  V  G  F  W  S  G  *  S  I  E  P  L  V  S  D  I  V  L  *  H  R  L  I  *  G  V  V  W  S  V  H  S  *  Q  Y  V  V  R  W  T  *  M  F  G  *  A  L  K  E  A  Q  V  *  *  S  *  G  *  Q  R  N  K  M  D  N  K  K  K  *  R  N  G  *  K  E  R  V  L  H  I  E  T  L  V  S  L  F  S  F  I  F  P  L  W  G  H  G  E  L  S  Y  S  R  P  T  R  N  I  T  R  E  D  A  S  K  S  G  V  I  Q  S  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27376" stop="27633"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSMLNTDEKQEKMSDVMWRAYTDELYSSKLLRQSGGPLLLLDIHALSNNCGTHCTADGMHYHRVVYEAAVHVMLNGLLIESNQKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="34198" PGL_stop="31144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34198" e_stop="33490"/>
            <exon e_start="31878" e_stop="31144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="0.984"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="34198" e_stop="33490" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33489" i_stop="31879" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="31878" e_stop="31144" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34198" stop="33490"/>
              <exon start="31878" stop="31144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAGAAAAAGGGGCGCCGACAAGCCCAATTGGCAAAGTTCAAAAAAGCAGTGAAGAAACATGACCATCCATGGTAATATCTCTGCAAAAAGTGACAAACTTTCCCTTTTCTCATAATTCCCTGCATAGTGAAACAACTCATCAGATTCAAGAGTTTAAGCAAAGCAACAATTTTTCATCTCTTTGATAGTGAAGAAGAACATATACACTCCATTTTGTAAGTATGCTACTACTGTCACTTTTAGTAGCATTCGCACTCTTTTCTCCAACCCCATTTGTCCATTCTCACTACAACTGGTCACCTTCTTCTTCCTCCACCTCCAATTTTCAGTCCGAGTGGCGTCCTGCACGCGCCACCTATTACGCCGCCGCCGACCCACGTGACGTTGTGGGTGGCGCGTGCGGATATGGGGATTTGGAGAGAAATGGGTATGGAAAAGCTACAGCTGGGTTAAGTACTGTGCTTTTTGACAAGGGTCAGATCTGTGGTGCTTGTTATGAAGTGAGGTGTGTGGAGGATCTGCGGTGGTGCATTCCGGGTACTTCTATAATTGTTACAGCCACTAATTTTTGTGCACCAAATTATGGGTTTGATCTAGATGGTGGTGGTCACTGTAATCCACCTAATGCCCATTTTGTGCTACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAG : GATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCTTGTCAGTTCTAATCAGTAATGTTGCAGGTTCGGGTGATATAGTGGCAGCAAAAGTTAAGGGTTCAAGAACAGGCTGGCTTCCTATGGGTAGGAACTGGGGCCAAAACTGGCACATTAATGCTGACTTAAAGAATCAGCCGCTTTCTTTTGAGATGACTAGTGGTGATGGGGCCACCTTAACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAAGTGTATCTATTGCTCATCTTTTATTTTGGATTGCTCAACATTGGCTAGCAATGTTGGGACATTTTTGTTCGAGTTCATGTTGGACAAGTGACTACCTGATTAAGTCGTTGCAGAGCAAAGCTCTGCGATTGTGCGGTATGTTGTTGTTCACTCAATCCTTGTGAACTTGAACGGAACCAGAGAAGAAACTTGCCACTTGCAAGGCAATTTTATCAAGCAATTGTTTTGCCAGTCAAATGTTGCAGAACCTGAATCAAAGTTGTTAGAATTGTTGATTTGTAGATTAAGAATGTTCCTTTTCGAATCTGATGAAATTTATGAACTCATCCAAAGGAGACAAATATTTCCTTGTTATTGTAGATTTTTTTGTCAAACGATCAAAACATTATCCTTATCTTGTCACCTTTATTTA</gDNA_template>
            <first_frame> R  E  K  K  G  R  R  Q  A  Q  L  A  K  F  K  K  A  V  K  K  H  D  H  P  W  *  Y  L  C  K  K  *  Q  T  F  P  F  L  I  I  P  C  I  V  K  Q  L  I  R  F  K  S  L  S  K  A  T  I  F  H  L  F  D  S  E  E  E  H  I  H  S  I  L  *  V  C  Y  Y  C  H  F  *  *  H  S  H  S  F  L  Q  P  H  L  S  I  L  T  T  T  G  H  L  L  L  P  P  P  P  I  F  S  P  S  G  V  L  H  A  P  P  I  T  P  P  P  T  H  V  T  L  W  V  A  R  A  D  M  G  I  W  R  E  M  G  M  E  K  L  Q  L  G  *  V  L  C  F  L  T  R  V  R  S  V  V  L  V  M  K  *  G  V  W  R  I  C  G  G  A  F  R  V  L  L  *  L  L  Q  P  L  I  F  V  H  Q  I  M  G  L  I  *  M  V  V  V  T  V  I  H  L  M  P  I  L  C  Y  P  L  R  L  L  R  R  L  P  F  G  K  L  L  I  C  P  F  N  T  A   : G  *  S  A  E  R  K  V  E  F  D  S  L  L  V  A  L  V  Y  S  C  Q  F  *  S  V  M  L  Q  V  R  V  I  *  W  Q  Q  K  L  R  V  Q  E  Q  A  G  F  L  W  V  G  T  G  A  K  T  G  T  L  M  L  T  *  R  I  S  R  F  L  L  R  *  L  V  V  M  G  P  P  *  H  L  T  M  *  L  P  R  I  G  I  L  V  R  P  L  K  A  S  S  L  G  L  R  L  M  P  K  V  Y  L  L  L  I  F  Y  F  G  L  L  N  I  G  *  Q  C  W  D  I  F  V  R  V  H  V  G  Q  V  T  T  *  L  S  R  C  R  A  K  L  C  D  C  A  V  C  C  C  S  L  N  P  C  E  L  E  R  N  Q  R  R  N  L  P  L  A  R  Q  F  Y  Q  A  I  V  L  P  V  K  C  C  R  T  *  I  K  V  V  R  I  V  D  L  *  I  K  N  V  P  F  R  I  *  *  N  L  *  T  H  P  K  E  T  N  I  S  L  L  L  *  I  F  L  S  N  D  Q  N  I  I  L  I  L  S  P  L  F  </first_frame>
            <second_frame>  E  R  K  R  G  A  D  K  P  N  W  Q  S  S  K  K  Q  *  R  N  M  T  I  H  G  N  I  S  A  K  S  D  K  L  S  L  F  S  *  F  P  A  *  *  N  N  S  S  D  S  R  V  *  A  K  Q  Q  F  F  I  S  L  I  V  K  K  N  I  Y  T  P  F  C  K  Y  A  T  T  V  T  F  S  S  I  R  T  L  F  S  N  P  I  C  P  F  S  L  Q  L  V  T  F  F  F  L  H  L  Q  F  S  V  R  V  A  S  C  T  R  H  L  L  R  R  R  R  P  T  *  R  C  G  W  R  V  R  I  W  G  F  G  E  K  W  V  W  K  S  Y  S  W  V  K  Y  C  A  F  *  Q  G  S  D  L  W  C  L  L  *  S  E  V  C  G  G  S  A  V  V  H  S  G  Y  F  Y  N  C  Y  S  H  *  F  L  C  T  K  L  W  V  *  S  R  W  W  W  S  L  *  S  T  *  C  P  F  C  A  T  H  *  G  F  *  E  D  C  H  L  E  S  F  *  Y  A  H  S  I  P  Q  :  D  K  V  Q  K  G  R  W  S  S  I  H  S  W  W  L  W  Y  I  L  V  S  S  N  Q  *  C  C  R  F  G  *  Y  S  G  S  K  S  *  G  F  K  N  R  L  A  S  Y  G  *  E  L  G  P  K  L  A  H  *  C  *  L  K  E  S  A  A  F  F  *  D  D  *  W  *  W  G  H  L  N  I  L  Q  C  S  S  Q  E  L  E  F  W  S  D  L  *  R  Q  A  V  W  V  L  D  S  C  Q  K  C  I  Y  C  S  S  F  I  L  D  C  S  T  L  A  S  N  V  G  T  F  L  F  E  F  M  L  D  K  *  L  P  D  *  V  V  A  E  Q  S  S  A  I  V  R  Y  V  V  V  H  S  I  L  V  N  L  N  G  T  R  E  E  T  C  H  L  Q  G  N  F  I  K  Q  L  F  C  Q  S  N  V  A  E  P  E  S  K  L  L  E  L  L  I  C  R  L  R  M  F  L  F  E  S  D  E  I  Y  E  L  I  Q  R  R  Q  I  F  P  C  Y  C  R  F  F  C  Q  T  I  K  T  L  S  L  S  C  H  L  Y  L </second_frame>
            <third_frame>   R  E  K  G  A  P  T  S  P  I  G  K  V  Q  K  S  S  E  E  T  *  P  S  M  V  I  S  L  Q  K  V  T  N  F  P  F  S  H  N  S  L  H  S  E  T  T  H  Q  I  Q  E  F  K  Q  S  N  N  F  S  S  L  *  *  *  R  R  T  Y  T  L  H  F  V  S  M  L  L  L  S  L  L  V  A  F  A  L  F  S  P  T  P  F  V  H  S  H  Y  N  W  S  P  S  S  S  S  T  S  N  F  Q  S  E  W  R  P  A  R  A  T  Y  Y  A  A  A  D  P  R  D  V  V  G  G  A  C  G  Y  G  D  L  E  R  N  G  Y  G  K  A  T  A  G  L  S  T  V  L  F  D  K  G  Q  I  C  G  A  C  Y  E  V  R  C  V  E  D  L  R  W  C  I  P  G  T  S  I  I  V  T  A  T  N  F  C  A  P  N  Y  G  F  D  L  D  G  G  G  H  C  N  P  P  N  A  H  F  V  L  P  I  E  A  F  E  K  I  A  I  W  K  A  S  N  M  P  I  Q  Y  R  R :   I  K  C  R  K  E  G  G  V  R  F  T  L  G  G  S  G  I  F  L  S  V  L  I  S  N  V  A  G  S  G  D  I  V  A  A  K  V  K  G  S  R  T  G  W  L  P  M  G  R  N  W  G  Q  N  W  H  I  N  A  D  L  K  N  Q  P  L  S  F  E  M  T  S  G  D  G  A  T  L  T  S  Y  N  V  A  P  K  N  W  N  F  G  Q  T  F  E  G  K  Q  F  G  S  *  T  H  A  K  S  V  S  I  A  H  L  L  F  W  I  A  Q  H  W  L  A  M  L  G  H  F  C  S  S  S  C  W  T  S  D  Y  L  I  K  S  L  Q  S  K  A  L  R  L  C  G  M  L  L  F  T  Q  S  L  *  T  *  T  E  P  E  K  K  L  A  T  C  K  A  I  L  S  S  N  C  F  A  S  Q  M  L  Q  N  L  N  Q  S  C  *  N  C  *  F  V  D  *  E  C  S  F  S  N  L  M  K  F  M  N  S  S  K  G  D  K  Y  F  L  V  I  V  D  F  F  V  K  R  S  K  H  Y  P  Y  L  V  T  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34004" stop="33490"/>
                    <exon start="31878" stop="31569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTYTLHFVSMLLLSLLVAFALFSPTPFVHSHYNWSPSSSSTSNFQSEWRPARATYYAAADPRDVVGGACGYGDLERNGYGKATAGLSTVLFDKGQICGACYEVRCVEDLRWCIPGTSIIVTATNFCAPNYGFDLDGGGHCNPPNAHFVLPIEAFEKIAIWKASNMPIQYRRIKCRKEGGVRFTLGGSGIFLSVLISNVAGSGDIVAAKVKGSRTGWLPMGRNWGQNWHINADLKNQPLSFEMTSGDGATLTSYNVAPKNWNFGQTFEGKQFGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31452" stop="31144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVAEQSSAIVRYVVVHSILVNLNGTREETCHLQGNFIKQLFCQSNVAEPESKLLELLICRLRMFLFESDEIYELIQRRQIFPCYCRFFCQTIKTLSLSCHLYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="43218" PGL_stop="41522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43218" e_stop="43013"/>
            <exon e_start="42901" e_stop="42675"/>
            <exon e_start="42458" e_stop="42125"/>
            <exon e_start="42042" e_stop="41522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.868" e_score="0.971"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="43218" e_stop="43013" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.868">
            <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42901" e_stop="42675" e_length="227"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42458" e_stop="42125" e_length="334"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42042" e_stop="41522" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43218" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42125"/>
              <exon start="42042" stop="41522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATCACTCACACCATAGAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG : CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG : GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG : GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAAC</gDNA_template>
            <first_frame> F  I  T  H  T  I  E  N  R  Y  Q  T  Q  A  N  *  K  I  N  *  R  V  S  L  V  R  K  E  K  K  T  E  K  W  R  V  I  S  Q  L  W  I  W  G  C  F  K  L  R  K  G  L  K  Q  W  T  K  S  K  M  H  V  K  T  G  V  S  L  S :   L  *  I  M  G  F  L  M  N  C  W  T  Q  W  R  I  *  L  R  D  I  T  K  S  A  W  N  K  G  L  K  K  W  W  Q  V  K  D  L  K  L  S  K  L  K  L  M  I  L  I  G  R  A  L  S  S  *  N  I  F  L  F  P  M  C  M  K  F  L  T  W  M  M  N  T   : G  K  L  *  K  I  L  H  *  S  *  R  N  *  L  K  I  F  W  I  C  Y  V  R  I  L  D  *  R  K  V  I  *  K  K  H  F  M  A  Q  R  V  Q  L  L  V  P  K  L  A  T  I  L  L  V  P  S  Q  T  *  S  K  A  F  A  L  T  R  M  L  V  A  S  S  F  Y  S  K  M  T  K  S  V  V  S  N  C  *  K  M  A  I  G  L  M  Y  L  L  *  N  T  L  L  S  S  T  S  A  I  S  *  R :   *  L  L  M  E  D  T  R  V  L  S  T  E  *  L  L  N  K  M  A  L  G  C  Q  *  L  P  F  I  I  Q  E  V  M  L  S  Y  F  Q  H  Q  S  *  L  R  R  Q  K  R  T  T  N  *  S  I  Q  N  L  C  L  K  I  I  *  S  C  M  Q  V  S  N  S  R  L  R  S  L  G  L  K  Q  *  R  L  W  R  L  L  S  T  *  V  Q  *  K  L  F  D  N  L  F  K  G  E  F  V  Y  V  L  I  G  H  *  L  R  G  L  K  K  L  R  F  L  K  L  C  C  P  F  S  *  *  F  T  M  L  L  D  V  S  L  S  V  V  W  *  *  A  V  *  G  C  S  L  W  G  I  L  *  S  F  L  F  Y  F  N  E  I  Y  A  *  R  K  </first_frame>
            <second_frame>  L  S  L  T  P  *  R  T  D  T  K  H  K  Q  I  K  R  *  T  R  E  S  A  *  *  E  K  K  K  K  Q  K  N  G  E  *  F  P  S  C  G  Y  G  V  A  S  N  *  E  K  A  *  S  N  G  Q  N  Q  R  C  M  *  K  L  G  F  L  *   : A  C  E  S  W  D  F  S  *  I  A  G  H  S  G  E  F  N  *  G  T  L  Q  K  V  H  G  T  K  V  *  R  N  G  G  K  *  R  T  *  S  C  P  N  *  N  *  *  S  *  L  G  E  H  F  L  L  E  T  S  S  C  F  Q  C  V  *  S  S  *  P  G  *  *  I  Q  :  E  S  Y  E  R  F  C  T  E  A  R  E  T  S  *  K  S  F  G  F  A  M  *  E  S  W  T  R  E  R  L  F  E  K  S  I  L  W  L  K  G  S  N  F  W  Y  Q  S  *  Q  L  S  S  L  S  Q  A  R  L  D  Q  R  P  S  R  S  H  G  C  W  W  H  H  P  S  I  P  R  *  Q  S  Q  W  S  P  I  A  K  R  W  Q  L  D  *  C  T  S  Y  E  T  L  Y  C  H  Q  P  R  R  S  A  R   : G  D  Y  *  W  K  I  Q  E  Y  *  A  Q  S  D  C  S  T  R  W  H  *  D  V  N  S  F  L  L  *  S  R  K  *  C  C  H  I  S  S  T  R  V  D  *  E  D  R  R  G  Q  Q  I  E  V  S  K  I  C  V  *  R  L  Y  E  V  V  C  R  S  Q  I  P  G  *  G  A  *  V  *  S  N  E  G  C  G  D  Y  C  Q  L  R  S  N  R  N  C  L  I  I  F  S  R  G  N  L  F  M  F  *  *  D  T  N  *  E  D  *  R  S  *  G  F  *  S  C  V  V  L  L  V  N  N  L  L  C  Y  L  M  C  H  C  L  L  F  G  S  E  L  F  E  V  V  L  Y  G  V  Y  C  K  V  S  S  F  T  L  M  K  S  M  L  K  E  N </second_frame>
            <third_frame>   Y  H  S  H  H  R  E  Q  I  P  N  T  S  K  L  K  D  K  L  E  S  Q  L  S  K  K  R  K  K  N  R  K  M  E  S  N  F  P  V  V  D  M  G  L  L  Q  T  E  K  R  P  E  A  M  D  K  I  K  D  A  C  E  N  W  G  F  F  E  :  L  V  N  H  G  I  S  H  E  L  L  D  T  V  E  N  L  T  K  G  H  Y  K  K  C  M  E  Q  R  F  K  E  M  V  A  S  K  G  L  E  A  V  Q  T  E  I  D  D  L  D  W  E  S  T  F  F  L  K  H  L  P  V  S  N  V  Y  E  V  P  D  L  D  D  E  Y  R :   K  V  M  K  D  F  A  L  K  L  E  K  L  A  E  N  L  L  D  L  L  C  E  N  L  G  L  E  K  G  Y  L  K  K  A  F  Y  G  S  K  G  P  T  F  G  T  K  V  S  N  Y  P  P  C  P  K  P  D  L  I  K  G  L  R  A  H  T  D  A  G  G  I  I  L  L  F  Q  D  D  K  V  S  G  L  Q  L  L  K  D  G  N  W  I  D  V  P  P  M  K  H  S  I  V  I  N  L  G  D  Q  L  E  :  V  I  T  N  G  R  Y  K  S  I  E  H  R  V  I  A  Q  Q  D  G  T  R  M  S  I  A  S  F  Y  N  P  G  S  D  A  V  I  F  P  A  P  E  L  I  E  K  T  E  E  D  N  K  L  K  Y  P  K  F  V  F  E  D  Y  M  K  L  Y  A  G  L  K  F  Q  A  K  E  P  R  F  E  A  M  K  A  V  E  T  T  V  N  L  G  P  I  E  T  V  *  *  S  F  Q  G  G  I  C  L  C  F  N  R  T  L  I  K  R  I  K  E  V  K  V  S  K  A  V  L  S  F  *  L  I  I  Y  Y  V  T  *  C  V  I  V  C  C  L  V  V  S  C  L  R  L  F  S  M  G  Y  I  V  K  F  P  L  L  L  *  *  N  L  C  L  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43216" stop="43013"/>
                    <exon start="42901" stop="42675"/>
                    <exon start="42458" stop="42125"/>
                    <exon start="42042" stop="41749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHSHHREQIPNTSKLKDKLESQLSKKRKKNRKMESNFPVVDMGLLQTEKRPEAMDKIKDACENWGFFELVNHGISHELLDTVENLTKGHYKKCMEQRFKEMVASKGLEAVQTEIDDLDWESTFFLKHLPVSNVYEVPDLDDEYRKVMKDFALKLEKLAENLLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMKHSIVINLGDQLEVITNGRYKSIEHRVIAQQDGTRMSIASFYNPGSDAVIFPAPELIEKTEEDNKLKYPKFVFEDYMKLYAGLKFQAKEPRFEAMKAVETTVNLGPIETV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="59274" PGL_stop="61214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59274" e_stop="59805"/>
            <exon e_start="60342" e_stop="60537"/>
            <exon e_start="60633" e_stop="61214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59274" e_stop="59805" e_length="532"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60342" e_stop="60537" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60633" e_stop="61214" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59274" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="61214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59422" stop="59805"/>
              <exon start="60342" stop="60388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC : GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG : ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTG</gDNA_template>
            <first_frame> V  F  F  I  S  Y  L  Q  K  I  A  F  C  S  F  S  V  S  L  *  K  W  L  P  S  L  L  S  I  K  F  L  A  E  L  S  K  L  H  P  N  I  Q  N  P  P  P  K  S  Q  L  Y  P  S  P  P  R  I  S  H  Q  K  Q  N  Y  T  E  Q  F  Q  S  K  N  S  H  T  Q  N  Q  N  S  Q  L  K  P  Q  I  T  T  R  K  M  S  G  G  R  K  W  R  K  *  V  R  V  E  *  R  L  W  M  K  N  H  Q  R  S  Q  V  K  L  S  C  *  R  S  N  W  R  I  L  F  M  E  P  I  G  V  *  V  L  A  V  R  L  G  R  K  S  L  N  S  S  H  S  L  S  R  R  T  L  I  Q  H  L  L  K  P  *  L  F  S  T  A  N  G  F  L   : R  T  H  L  F  R  V  C  S  P  C  C  H  G  A  I  C  F  W  F  E  L  K  R  F  H  R  L  S  I  L  R  V  S  L  S  K  T  L  L  S  L  L  D  L  *  L  Q  L  P  L  V  P  M  P  N  S  K  S  E  V  Q  N  A  S  R :   L  N  S  K  K  A  *  L  E  H  P  S  *  Q  I  P  S  Y  C  L  R  T  L  N  S  W  D  K  R  L  I  *  A  P  S  K  A  *  L  L  Q  S  K  T  Q  L  P  R  W  P  S  P  F  Q  V  N  H  Q  L  S  F  L  F  P  I  T  M  H  N  H  G  C  *  Q  P  T  W  M  M  S  L  G  S  P  E  E  M  L  A  V  Y  L  C  *  S  R  K  A  V  P  S  *  S  L  K  R  H  M  F  L  E  L  C  F  S  S  *  Y  R  R  A  N  T  R  K  *  K  N  M  M  *  T  K  N  K  F  S  S  S  Q  T  L  *  M  A  C  P  H  D  L  Y  L  W  H  I  I  K  L  *  L  E  R  S  *  H  M  N  H  L  A  G  D  H  S  N  L  E  A  F  I  C  *  S  E  *  G  Q  K  Y  P  K  I  I   </first_frame>
            <second_frame>  F  S  S  F  H  I  Y  K  K  *  H  S  A  L  S  L  F  H  S  E  N  G  F  H  L  F  S  Q  S  N  S  L  Q  N  S  P  N  Y  I  P  I  F  K  T  H  L  Q  N  L  N  F  T  H  L  L  H  E  F  P  I  K  N  R  T  T  Q  S  N  F  S  Q  R  I  H  I  P  K  T  K  I  H  S  S  S  H  K  L  R  Q  G  R  *  V  G  A  G  S  G  E  N  K  S  G  W  S  S  G  C  G  *  R  T  T  K  G  A  K  *  N  *  V  A  E  E  A  I  G  G  F  F  L  W  N  Q  *  G  F  E  C  *  Q  *  D  *  G  G  N  R  *  T  H  H  T  A  *  V  E  E  P  *  S  S  T  Y  *  S  L  D  S  S  Q  R  Q  M  D  S  C  :  V  H  I  F  F  G  F  V  P  L  V  V  T  G  Q  S  A  S  G  S  S  *  R  D  F  T  D  Y  R  F  *  E  F  H  C  P  K  L  C  C  L  C  W  T  F  S  Y  N  F  H  *  Y  Q  C  Q  I  R  S  Q  K  S  K  T  R  P   : D  *  I  R  R  R  H  N  W  N  T  P  V  D  R  F  H  R  I  A  *  E  R  *  I  L  G  T  K  D  *  S  K  P  L  Q  R  L  D  Y  F  S  P  R  H  S  F  L  G  G  Q  V  H  F  K  S  T  T  N  *  V  S  Y  F  Q  *  Q  C  T  I  M  A  A  D  N  L  L  G  *  *  A  *  D  L  Q  R  R  C  W  Q  C  I  C  V  D  Q  G  R  Q  S  P  L  E  A  L  K  D  T  C  F  W  S  Y  V  F  H  H  N  I  G  E  Q  T  L  E  S  K  K  I  *  C  K  L  K  I  S  F  P  Q  V  K  L  Y  R  W  L  V  L  M  I  C  T  Y  G  I  L  L  N  Y  S  L  K  E  V  N  I  *  I  T  *  Q  E  T  I  L  I  *  K  P  S  Y  A  N  R  N  R  V  K  N  T  L  K  L  F  </second_frame>
            <third_frame>   F  L  H  F  I  F  T  K  N  S  I  L  L  F  L  C  F  T  L  K  M  A  S  I  S  S  L  N  Q  I  P  C  R  T  L  Q  I  T  S  Q  Y  S  K  P  T  S  K  I  S  T  L  P  I  S  S  T  N  F  P  S  K  T  E  L  H  R  A  I  S  V  K  E  F  T  Y  P  K  P  K  F  T  A  Q  A  T  N  Y  D  K  E  D  E  W  G  P  E  V  E  K  I  S  P  G  G  V  A  V  V  D  E  E  P  P  K  E  P  S  E  I  E  L  L  K  K  Q  L  A  D  S  F  Y  G  T  N  R  G  L  S  A  S  S  E  T  R  A  E  I  V  E  L  I  T  Q  L  E  S  K  N  P  N  P  A  P  T  E  A  L  T  L  L  N  G  K  W  I  L  A :   Y  T  S  F  S  G  L  F  P  L  L  S  R  G  N  L  L  L  V  R  V  E  E  I  S  Q  T  I  D  S  E  S  F  T  V  Q  N  S  V  V  F  A  G  P  L  A  T  T  S  I  S  T  N  A  K  F  E  V  R  S  P  K  R  V  Q  :  I  K  F  E  E  G  I  I  G  T  P  Q  L  T  D  S  I  V  L  P  E  N  V  E  F  L  G  Q  K  I  D  L  S  P  F  K  G  L  I  T  S  V  Q  D  T  A  S  S  V  A  K  S  I  S  S  Q  P  P  I  K  F  P  I  S  N  N  N  A  Q  S  W  L  L  T  T  Y  L  D  D  E  L  R  I  S  R  G  D  A  G  S  V  F  V  L  I  K  E  G  S  P  L  L  K  P  *  K  T  H  V  F  G  V  M  F  F  I  I  I  *  E  S  K  H  *  K  V  K  K  Y  D  V  N  *  K  *  V  F  L  K  S  N  S  I  D  G  L  S  S  *  S  V  L  M  A  Y  Y  *  I  I  A  *  K  K  L  T  Y  E  S  L  S  R  R  P  F  *  F  R  S  L  H  M  L  I  G  I  G  S  K  I  P  *  N  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59276" stop="59805"/>
                    <exon start="60342" stop="60537"/>
                    <exon start="60633" stop="60947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHFIFTKNSILLFLCFTLKMASISSLNQIPCRTLQITSQYSKPTSKISTLPISSTNFPSKTELHRAISVKEFTYPKPKFTAQATNYDKEDEWGPEVEKISPGGVAVVDEEPPKEPSEIELLKKQLADSFYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLLLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPISNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLLKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="62700" PGL_stop="69387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62700" e_stop="62995"/>
            <exon e_start="63638" e_stop="63799"/>
            <exon e_start="63890" e_stop="64011"/>
            <exon e_start="64121" e_stop="64174"/>
            <exon e_start="64280" e_stop="64386"/>
            <exon e_start="64509" e_stop="64614"/>
            <exon e_start="65200" e_stop="65263"/>
            <exon e_start="66879" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62700" e_stop="62995" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63638" e_stop="63799" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63890" e_stop="64011" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64174" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64280" e_stop="64386" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.873">
            <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64509" e_stop="64614" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65200" e_stop="65263" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66879" e_stop="66967" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="13" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="16" e_score="0.994">
            <gDNA_exon_boundary e_start="69050" e_stop="69387" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62700" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62734" stop="62995"/>
              <exon start="63638" stop="63711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTCCGAAAGATCTGATTATTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTA</gDNA_template>
            <first_frame> S  S  E  R  S  D  Y  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  I  S  C  F  K  N  I  L  F  L  *  R  *  M  K  K  N  T  *  V  E  P  L  H  I  </first_frame>
            <second_frame>  A  P  K  D  L  I  I  W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  *  S  L  V  L  K  I  F  S  S  Y  E  G  K  *  K  K  I  H  K  *  S  L  C  I  L </second_frame>
            <third_frame>   L  R  K  I  *  L  F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y  N  L  L  F  *  K  Y  S  L  L  M  K  V  N  E  K  K  Y  I  S  R  A  F  A  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62701" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
                    <exon start="64280" stop="64386"/>
                    <exon start="64509" stop="64614"/>
                    <exon start="65200" stop="65263"/>
                    <exon start="66879" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1803</number_coding_nucleotides>
                  <number_encoded_amino_acids>601</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APKDLIIWPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="80992" PGL_stop="82418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80992" e_stop="82418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="80992" e_stop="82418" e_length="1427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80992" stop="82418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAAACTCAACCAATCTTATTGACAAATTTCATGTCTCCCTCTATTTATTATTCGTAGGGTCTTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGGCGGCCGGAGGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAATCAGTTAGGTTGCAGAAGTGATCAAAATAGTGCCATCCATATCGCCGCCGCCACCGGAGTCGGTGATGATCAGAATGGTAGCAGCACAGTCACCGGTGAAGGGGTACGTGGCAGTAACTTATTTAATCTCAAAAGCCTATTTACTAAAAAAGTATATTAAATTAAATAGTGGCAAATCCAAAGTAATTACACACTTTTTGAGTTATATGTTAGTGTATCTATCATTATCCTTTTCTATATTCTCCTATGTAACTTTTTCGTAATGTAAAGTCCTAACTTTTGACGTTTGCAATGTAATATTTGGCCCTCAGTTTGGTCAACATACTGCCCTATTGCTATTCAAGTTGAAGTGTTTGTATAATTTTGCCTACTTTAGT</gDNA_template>
            <first_frame> G  K  T  Q  P  I  L  L  T  N  F  M  S  P  S  I  Y  Y  S  *  G  L  S  L  P  F  L  L  F  L  S  S  *  E  H  K  G  E  R  R  K  E  F  L  F  F  L  L  S  A  E  T  K  N  G  R  P  *  K  A  Y  I  I  *  Q  S  N  N  H  D  *  L  R  L  Y  P  F  T  R  I  R  I  L  D  G  P  K  P  I  F  S  S  T  Q  S  A  L  C  R  *  A  L  L  P  W  R  P  T  P  I  R  P  P  S  K  *  N  K  C  Y  F  A  *  T  I  R  V  G  P  T  R  N  *  I  W  G  *  A  F  C  C  D  S  Q  L  V  R  R  R  S  F  F  H  L  L  E  A  M  E  G  Y  I  Q  E  N  *  E  E  R  *  *  *  G  E  L  *  R  E  E  K  G  E  E  E  R  E  K  T  G  W  G  K  Q  W  R  D  W  G  G  V  E  H  *  H  L  A  L  F  E  E  *  I  R  R  K  R  R  K  *  A  S  G  Y  G  W  I  R  I  G  D  A  K  G  Q  *  C  S  V  F  P  E  Q  L  R  R  *  I  Q  V  T  E  M  A  Q  *  S  Q  S  W  W  G  S  F  G  P  E  Q  P  S  L  A  G  T  T  E  L  Y  Q  P  R  I  R  Y  P  E  L  R  Q  P  R  Q  N  Y  *  K  S  H  Q  K  R  S  P  P  E  R  K  Q  H  Q  K  G  S  N  *  K  R  R  R  *  S  P  P  E  M  V  V  S  G  G  R  R  W  A  *  N  *  S  L  K  L  E  C  P  Y  V  H  W  L  Q  E  S  V  R  L  Q  K  *  S  K  *  C  H  P  Y  R  R  R  H  R  S  R  *  *  S  E  W  *  Q  H  S  H  R  *  R  G  T  W  Q  *  L  I  *  S  Q  K  P  I  Y  *  K  S  I  L  N  *  I  V  A  N  P  K  *  L  H  T  F  *  V  I  C  *  C  I  Y  H  Y  P  F  L  Y  S  P  M  *  L  F  R  N  V  K  S  *  L  L  T  F  A  M  *  Y  L  A  L  S  L  V  N  I  L  P  Y  C  Y  S  S  *  S  V  C  I  I  L  P  T  L   </first_frame>
            <second_frame>  E  K  L  N  Q  S  Y  *  Q  I  S  C  L  P  L  F  I  I  R  R  V  F  L  F  R  S  F  F  F  F  P  R  K  N  T  K  E  K  E  E  K  S  F  F  F  F  F  S  L  Q  K  Q  R  M  E  D  P  E  R  L  T  S  S  N  S  Q  T  T  T  I  S  S  D  S  I  H  S  P  E  F  E  F  W  M  V  R  N  P  S  F  P  Q  P  N  Q  L  S  A  D  E  L  F  S  H  G  V  L  L  P  L  D  L  L  Q  N  E  T  N  V  I  S  P  E  P  S  G  S  G  R  P  E  T  E  S  G  V  E  P  S  A  A  I  V  N  S  S  G  G  G  A  S  F  T  S  S  K  R  W  K  D  I  F  K  K  T  E  K  K  D  S  N  E  E  N  C  R  E  K  K  K  E  K  K  K  E  K  K  L  V  G  G  S  N  G  V  T  G  A  E  L  N  I  N  I  W  P  F  S  R  S  R  S  A  G  N  G  G  S  R  P  R  V  T  G  G  S  G  L  A  T  R  K  V  S  S  A  P  C  S  R  S  N  S  A  G  E  S  K  S  R  K  W  P  S  S  P  S  R  G  G  V  H  L  G  R  S  S  P  V  W  Q  V  R  R  S  S  I  N  P  G  S  G  T  R  S  S  D  N  L  V  K  T  T  E  K  A  I  R  K  E  A  P  Q  K  E  S  S  T  R  K  V  V  T  K  K  E  G  V  E  V  R  R  K  W  S  S  A  A  A  G  G  G  P  K  T  R  V  L  N  L  N  V  P  M  C  I  G  Y  R  N  Q  L  G  C  R  S  D  Q  N  S  A  I  H  I  A  A  A  T  G  V  G  D  D  Q  N  G  S  S  T  V  T  G  E  G  V  R  G  S  N  L  F  N  L  K  S  L  F  T  K  K  V  Y  *  I  K  *  W  Q  I  Q  S  N  Y  T  L  F  E  L  Y  V  S  V  S  I  I  I  L  F  Y  I  L  L  C  N  F  F  V  M  *  S  P  N  F  *  R  L  Q  C  N  I  W  P  S  V  W  S  T  Y  C  P  I  A  I  Q  V  E  V  F  V  *  F  C  L  L  *  </second_frame>
            <third_frame>   K  N  S  T  N  L  I  D  K  F  H  V  S  L  Y  L  L  F  V  G  S  F  S  S  V  P  S  F  S  F  L  V  R  T  Q  R  R  K  K  K  R  V  S  F  F  S  S  L  C  R  N  K  E  W  K  T  L  K  G  L  H  H  L  T  V  K  Q  P  R  L  A  P  T  L  S  I  H  P  N  S  N  F  G  W  S  E  T  H  L  F  L  N  P  I  S  S  L  P  M  S  S  S  P  M  A  S  Y  S  H  *  T  S  F  K  M  K  Q  M  L  F  R  L  N  H  P  G  R  A  D  P  K  L  N  L  G  L  S  L  L  L  R  *  S  T  R  P  A  E  E  L  L  S  P  P  R  S  D  G  R  I  Y  S  R  K  L  R  R  K  I  V  M  R  R  I  V  E  R  R  K  R  R  R  R  K  R  K  N  W  L  G  E  A  M  A  *  L  G  R  S  *  T  L  T  F  G  P  F  R  G  V  D  P  P  E  T  E  E  V  G  L  G  L  R  V  D  P  D  W  R  R  E  R  S  V  V  L  R  V  P  G  A  T  P  P  V  N  P  S  H  G  N  G  P  V  V  P  V  V  V  G  F  I  W  A  G  A  A  Q  F  G  R  Y  D  G  A  L  S  T  Q  D  P  V  P  G  A  P  T  T  S  S  K  L  L  K  K  P  S  E  K  K  P  P  R  K  K  A  A  P  E  R  *  *  L  K  K  K  A  L  K  S  A  G  N  G  R  Q  R  R  P  E  V  G  L  K  L  E  S  *  T  *  M  S  L  C  A  L  V  T  G  I  S  *  V  A  E  V  I  K  I  V  P  S  I  S  P  P  P  P  E  S  V  M  I  R  M  V  A  A  Q  S  P  V  K  G  Y  V  A  V  T  Y  L  I  S  K  A  Y  L  L  K  K  Y  I  K  L  N  S  G  K  S  K  V  I  T  H  F  L  S  Y  M  L  V  Y  L  S  L  S  F  S  I  F  S  Y  V  T  F  S  *  C  K  V  L  T  F  D  V  C  N  V  I  F  G  P  Q  F  G  Q  H  T  A  L  L  L  F  K  L  K  C  L  Y  N  F  A  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81017" stop="82201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISCLPLFIIRRVFLFRSFFFFPRKNTKEKEEKSFFFFFSLQKQRMEDPERLTSSNSQTTTISSDSIHSPEFEFWMVRNPSFPQPNQLSADELFSHGVLLPLDLLQNETNVISPEPSGSGRPETESGVEPSAAIVNSSGGGASFTSSKRWKDIFKKTEKKDSNEENCREKKKEKKKEKKLVGGSNGVTGAELNINIWPFSRSRSAGNGGSRPRVTGGSGLATRKVSSAPCSRSNSAGESKSRKWPSSPSRGGVHLGRSSPVWQVRRSSINPGSGTRSSDNLVKTTEKAIRKEAPQKESSTRKVVTKKEGVEVRRKWSSAAAGGGPKTRVLNLNVPMCIGYRNQLGCRSDQNSAIHIAAATGVGDDQNGSSTVTGEGVRGSNLFNLKSLFTKKVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="86004" PGL_stop="89379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86004" e_stop="86292"/>
            <exon e_start="87595" e_stop="87883"/>
            <exon e_start="88308" e_stop="88403"/>
            <exon e_start="88754" e_stop="89379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.878" e_score="0.997"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86004" e_stop="86292" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.878">
            <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87595" e_stop="87883" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88308" e_stop="88403" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="88754" e_stop="89379" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86004" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="89379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTGCAATATTGAAATTGGCACCCCCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG : TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG : AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT : GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTTGCACGGGTATTGTCCCCTAATTATGTGTCATATGGTACTTTCTTCATTTCCTGTAAGAACAACTGCTGTGTGGAAATGAAGTAGAATGGTTTGTATG</gDNA_template>
            <first_frame> M  L  Q  Y  *  N  W  H  P  Q  T  R  Q  N  K  *  K  P  *  N  *  V  I  S  I  I  I  E  S  N  R  I  P  L  L  L  E  V  A  A  T  E  *  N  Q  C  P  H  A  I  P  R  N  P  L  G  K  P  P  V  T  V  P  V  E  F  V  H  F  P  I  S  T  V  H  Q  V  T  I  P  T  A  I  P  M  V  P  K  N  T  T  P  A  V  R  K   : V  E  C  L  F  K  I  L  Q  S  I  M  M  W  T  P  S  L  T  E  L  G  K  W  V  P  H  K  V  L  W  K  V  S  S  L  V  Q  A  Q  Q  A  L  L  D  L  Q  E  H  L  Q  G  R  Q  C  Q  H  Q  L  L  N  R  P  S  P  S  C  T  I  L  S  F  G  E  M  V  S  L  *  M  M  V  L  Y  E  G  W  M  I  L  K  M  H  L  F  W  R :   V  S  Q  S  L  N  V  L  E  S  W  L  L  Q  I  P  G  P  R  C  I  A  T  S  *  E  G  M  R  T  V  L :   N  Q  R  N  A  K  F  R  F  R  E  W  E  E  H  L  E  A  A  Q  L  K  Q  L  L  S  H  L  L  L  L  P  Q  A  E  S  Q  Q  L  P  Q  V  F  W  M  N  H  C  L  R  P  R  F  K  L  D  W  Q  M  E  V  A  W  L  H  T  S  T  S  T  K  L  L  A  T  S  V  P  S  L  M  L  Q  G  Q  V  T  P  G  H  I  N  Y  K  L  L  D  F  L  L  K  C  S  V  T  Q  P  K  R  L  S  K  Q  D  W  Q  I  Q  W  L  Y  K  N  F  N  V  L  C  Q  N  S  L  F  V  L  L  F  P  D  V  S  I  Y  L  L  L  D  I  N  F  *  S  M  *  I  *  S  C  T  K  I  A  A  G  V  V  *  N  S  F  F  L  K  L  N  V  A  R  V  L  S  P  N  Y  V  S  Y  G  T  F  F  I  S  C  K  N  N  C  C  V  E  M  K  *  N  G  L  Y  </first_frame>
            <second_frame>  C  C  N  I  E  I  G  T  P  K  Q  D  K  I  N  K  S  P  R  I  R  *  L  V  *  S  L  N  R  I  V  F  P  S  F  S  K  L  Q  Q  Q  S  R  I  N  V  L  T  R  Y  Q  E  T  L  *  A  N  L  R  *  P  C  R  W  N  S  Y  T  F  R  S  Q  P  S  I  R  S  R  F  R  Q  R  F  R  W  S  P  R  I  L  H  R  R  *  E  K  :  W  N  A  C  S  R  S  F  K  A  *  *  C  G  L  H  L  *  P  S  *  A  S  G  C  H  T  R  S  F  G  K  C  R  P  *  F  K  L  N  K  L  Y  W  I  C  K  N  T  C  R  G  D  S  A  N  I  S  S  S  T  A  R  V  H  R  A  Q  Y  C  L  L  E  K  W  F  H  C  K  *  W  S  F  T  K  A  G  *  S  *  K  C  I  F  S  G   : E  Y  H  K  V  *  M  S  *  R  V  G  S  C  R  Y  Q  V  P  G  A  L  Q  P  H  K  K  G  *  E  L  S   : *  T  R  E  T  P  S  F  V  S  G  S  G  K  N  T  W  K  Q  R  N  S  S  N  F  *  A  I  C  F  C  S  H  K  Q  S  P  S  S  F  H  K  C  S  G  *  I  I  A  F  D  L  A  S  N  *  I  G  R  W  K  S  H  G  C  T  L  Q  L  P  P  N  C  W  R  H  P  C  L  H  *  C  F  K  A  K  *  H  Q  G  I  S  T  T  N  C  W  I  S  S  *  N  A  Q  *  P  N  P  N  D  *  A  S  R  T  G  K  F  S  G  Y  T  K  I  L  M  C  S  A  K  T  L  F  S  F  Y  Y  F  Q  M  F  R  S  I  Y  Y  W  I  L  I  F  N  L  C  E  S  K  A  V  P  R  *  Q  Q  V  L  F  K  I  H  F  F  L  N  S  T  L  H  G  Y  C  P  L  I  M  C  H  M  V  L  S  S  F  P  V  R  T  T  A  V  W  K  *  S  R  M  V  C  M </second_frame>
            <third_frame>   V  A  I  L  K  L  A  P  P  N  K  T  K  *  I  K  A  L  E  L  G  D  *  Y  N  H  *  I  E  S  Y  S  P  P  S  R  S  C  S  N  R  V  E  S  M  S  S  R  D  T  K  K  P  S  R  Q  T  S  G  N  R  A  G  G  I  R  T  L  S  D  L  N  R  P  S  G  H  D  S  D  S  D  S  D  G  P  Q  E  Y  Y  T  G  G  E  K  S :   G  M  L  V  Q  D  P  S  K  H  N  D  V  D  S  I  F  D  R  A  R  Q  V  G  A  T  Q  G  P  L  E  S  V  V  P  S  S  S  S  T  S  F  T  G  S  A  R  T  L  A  G  E  T  V  P  T  S  A  P  Q  P  P  E  S  I  V  H  N  I  V  F  W  R  N  G  F  T  V  N  D  G  P  L  R  R  L  D  D  P  E  N  A  S  F  L  E  :  S  I  T  K  S  E  C  P  R  E  L  A  P  A  D  T  R  S  Q  V  H  C  N  L  I  R  R  D  E  N  C  P  :  E  P  E  K  R  Q  V  S  F  Q  G  V  G  R  T  L  G  S  S  A  T  Q  A  T  S  E  P  S  A  S  A  P  T  S  R  V  P  A  A  S  T  S  V  L  D  E  S  L  P  S  T  S  L  Q  I  R  L  A  D  G  S  R  M  V  A  H  F  N  F  H  Q  T  V  G  D  I  R  A  F  I  D  A  S  R  P  S  D  T  R  A  Y  Q  L  Q  T  V  G  F  P  P  K  M  L  S  D  P  T  Q  T  I  E  Q  A  G  L  A  N  S  V  V  I  Q  K  F  *  C  A  L  P  K  L  S  F  R  F  I  I  S  R  C  F  D  L  F  T  T  G  Y  *  F  L  I  Y  V  N  L  K  L  Y  Q  D  S  S  R  C  C  L  K  F  I  F  S  *  T  Q  R  C  T  G  I  V  P  *  L  C  V  I  W  Y  F  L  H  F  L  *  E  Q  L  L  C  G  N  E  V  E  W  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86087" stop="86292"/>
                    <exon start="87595" stop="87883"/>
                    <exon start="88308" stop="88403"/>
                    <exon start="88754" stop="89128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IESYSPPSRSCSNRVESMSSRDTKKPSRQTSGNRAGGIRTLSDLNRPSGHDSDSDSDGPQEYYTGGEKSGMLVQDPSKHNDVDSIFDRARQVGATQGPLESVVPSSSSTSFTGSARTLAGETVPTSAPQPPESIVHNIVFWRNGFTVNDGPLRRLDDPENASFLESITKSECPRELAPADTRSQVHCNLIRRDENCPEPEKRQVSFQGVGRTLGSSATQATSEPSASAPTSRVPAASTSVLDESLPSTSLQIRLADGSRMVAHFNFHQTVGDIRAFIDASRPSDTRAYQLQTVGFPPKMLSDPTQTIEQAGLANSVVIQKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="104771" PGL_stop="100878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104771" e_stop="104136"/>
            <exon e_start="103891" e_stop="103627"/>
            <exon e_start="101933" e_stop="101683"/>
            <exon e_start="101263" e_stop="100878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="0.980"/>
          <exon-intron don_prob="0.987" acc_prob="0.642" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="104771" e_stop="104136" e_length="636"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103891" e_stop="103627" e_length="265"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.642">
            <gDNA_intron_boundary i_start="103626" i_stop="101934" i_length="1693"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101933" e_stop="101683" e_length="251"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.957">
            <gDNA_intron_boundary i_start="101682" i_stop="101264" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101263" e_stop="100878" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104771" stop="104136"/>
              <exon start="103891" stop="103627"/>
              <exon start="101933" stop="101683"/>
              <exon start="101263" stop="100878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTGTGTTTGCTTTTTTTTCTGACTAGTAGTATTGCTAACTATGTATTCCATTAAGGATTTGCTGTGAAAAAGCCTGATATCAGTAAGCATAAAACTCGGGAGATCACTTACACACACACACCCTCGTAAAAAAGAGAAGAGAGATTTACTGTTAAACAGAGGTTTTTTTCCATTTCTTTTTTTTTTCTCAGTGTGTGTGAGAGAGAGAGATGGTTTTCATAGGCAAAAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG : ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG : GTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCG : GAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGTTTGTACTTGCT</gDNA_template>
            <first_frame> Y  C  V  F  A  F  F  S  D  *  *  Y  C  *  L  C  I  P  L  R  I  C  C  E  K  A  *  Y  Q  *  A  *  N  S  G  D  H  L  H  T  H  T  L  V  K  K  R  R  E  I  Y  C  *  T  E  V  F  F  H  F  F  F  F  S  Q  C  V  *  E  R  E  M  V  F  I  G  K  N  K  *  K  G  T  K  F  R  V  K  K  K  V  C  E  R  I  M  E  G  G  S  S  G  N  T  S  T  S  C  L  M  M  M  G  Y  G  D  H  E  N  N  N  N  N  N  G  N  G  N  G  N  G  N  G  N  V  T  I  C  A  P  P  M  M  M  M  M  P  P  P  P  P  S  L  T  N  N  N  N  A  E  T  S  S  N  N  I  L  F  L  P  F  M  D  N  N  N  N  N  P  Q  E  D  N  N  S  S  S  S  S  I  K  S  K  I  M  A  H  P  H  Y  H  R  L  L  T  A  Y  L  N  C  Q  K  :  I  G  A  P  P  E  V  V  A  R  L  E  E  I  C  A  T  S  A  T  M  G  R  S  S  S  S  S  G  G  G  I  I  G  E  D  P  A  L  D  Q  F  M  E  A  Y  C  E  M  L  T  K  Y  E  Q  E  L  S  K  P  F  K  E  A  M  V  F  L  S  R  I  E  C  Q  F  K  A  L  T  L  A  P  N  S  S  H  E  S   : G  V  A  L  G  E  A  M  D  R  N  G  S  S  D  E  E  V  D  V  N  N  S  F  I  D  P  Q  A  E  D  R  E  L  K  G  Q  L  L  R  K  Y  S  G  Y  L  G  S  L  K  Q  E  F  M  K  K  R  K  K  G  K  L  P  K  E  A  R  Q  Q  L  V  D  W  W  L  R  H  I  K  W  P  Y  P  S  :  E  S  Q  K  L  A  L  A  E  S  T  G  L  D  Q  K  Q  I  N  N  W  F  I  N  Q  R  K  R  H  W  K  P  S  E  D  M  Q  F  V  V  M  D  A  A  H  P  H  Y  Y  M  D  N  V  L  A  N  H  F  P  M  D  M  T  P  S  L  L  *  I  K  I  C  H  Y  *  Y  Q  G  C  L  I  N  L  H  I  T  C  V  H  V  V  V  Q  G  I  V  T  Q  S  T  F  Y  *  T  K  Y  I  K  C  L  *  *  I  F  L  L  S  S  L  I  I  E  L  N  S  L  Y  L   </first_frame>
            <second_frame>  I  V  C  L  L  F  F  L  T  S  S  I  A  N  Y  V  F  H  *  G  F  A  V  K  K  P  D  I  S  K  H  K  T  R  E  I  T  Y  T  H  T  P  S  *  K  R  E  E  R  F  T  V  K  Q  R  F  F  S  I  S  F  F  F  L  S  V  C  E  R  E  R  W  F  S  *  A  K  T  N  R  K  E  Q  N  L  E  *  R  R  K  C  V  R  E  *  W  R  V  V  L  V  E  I  L  V  H  L  V  *  *  *  W  D  M  E  I  M  R  T  T  T  T  T  M  E  M  V  M  E  M  E  M  E  M  *  Q  F  V  L  L  Q  *  *  *  *  C  L  L  L  L  L  L  *  L  T  I  T  M  Q  K  Q  A  A  T  T  S  F  F  F  L  S  W  T  T  T  T  I  I  L  K  K  T  T  T  L  L  L  L  P  S  S  Q  R  L  W  L  I  L  T  T  I  V  S  *  L  L  I  S  I  V  K  R :   *  E  L  R  Q  K  W  W  Q  G  *  R  K  Y  V  P  R  Q  Q  Q  W  A  V  A  V  V  V  V  V  V  E  S  L  E  K  I  L  H  *  I  S  S  W  R  L  I  V  R  C  *  Q  N  M  N  K  N  S  Q  N  P  S  R  K  P  W  F  F  F  Q  E  L  S  V  S  S  K  L  *  L  L  H  L  I  L  L  M  N  L  :  V  *  L  W  A  R  Q  W  I  E  M  D  H  L  M  K  R  L  T  *  I  T  V  S  S  T  P  R  L  R  I  E  S  S  K  V  N  C  C  V  S  T  A  V  T  W  E  A  L  S  R  S  S  *  R  R  G  R  K  A  S  C  L  R  K  Q  G  N  N  W  W  I  G  G  L  D  I  L  N  G  H  I  H  R :   N  L  R  S  L  H  *  L  N  Q  R  D  W  T  R  S  K  *  T  T  G  L  S  I  K  E  R  G  I  G  N  H  Q  K  I  C  S  L  L  *  W  M  L  L  I  H  I  T  I  W  I  M  F  L  L  T  I  S  Q  W  I  *  H  P  L  S  S  E  L  R  F  V  I  I  S  I  K  D  V  *  L  I  C  I  L  L  V  C  M  *  *  Y  K  V  L  *  H  N  Q  L  F  I  R  P  N  I  *  S  A  C  N  R  S  F  Y  Y  H  L  *  L  *  N  *  I  V  C  T  C  </second_frame>
            <third_frame>   L  C  V  C  F  F  F  *  L  V  V  L  L  T  M  Y  S  I  K  D  L  L  *  K  S  L  I  S  V  S  I  K  L  G  R  S  L  T  H  T  H  P  R  K  K  E  K  R  D  L  L  L  N  R  G  F  F  P  F  L  F  F  F  S  V  C  V  R  E  R  D  G  F  H  R  Q  K  Q  I  E  R  N  K  I  *  S  E  E  E  S  V  *  E  N  N  G  G  W  F  *  W  K  Y  *  Y  I  L  F  N  D  D  G  I  W  R  S  *  E  Q  Q  Q  Q  Q  W  K  W  *  W  K  W  K  W  K  C  N  N  L  C  S  S  N  D  D  D  D  A  S  S  S  S  F  F  N  *  Q  *  Q  C  R  N  K  Q  Q  Q  H  P  F  S  S  F  H  G  Q  Q  Q  Q  *  S  S  R  R  Q  Q  L  F  F  F  F  H  Q  V  K  D  Y  G  S  S  S  L  P  S  S  L  D  C  L  S  Q  L  S  K   : D  R  S  S  A  R  S  G  G  K  A  R  G  N  M  C  H  V  S  N  N  G  P  *  Q  *  *  *  W  W  W  N  H  W  R  R  S  C  T  R  S  V  H  G  G  L  L  *  D  A  D  K  I  *  T  R  T  L  K  T  L  Q  G  S  H  G  F  S  F  K  N  *  V  S  V  Q  S  F  N  S  C  T  *  F  F  S  *  I  W :   C  S  F  G  R  G  N  G  *  K  W  I  I  *  *  R  G  *  R  E  *  Q  F  H  R  P  P  G  *  G  *  R  A  Q  R  S  I  V  A  *  V  Q  R  L  L  G  K  P  *  A  G  V  H  E  E  E  E  E  R  Q  A  A  *  G  S  K  A  T  I  G  G  L  V  A  *  T  Y  *  M  A  I  S  I   : G  I  S  E  A  C  T  S  *  I  N  G  I  G  P  E  A  N  K  Q  L  V  Y  Q  S  K  K  E  A  L  E  T  I  R  R  Y  A  V  C  C  D  G  C  C  S  S  T  L  L  Y  G  *  C  S  C  *  P  F  P  N  G  Y  D  T  L  S  P  L  N  *  D  L  S  L  L  V  S  R  M  F  N  *  F  A  Y  Y  L  C  A  C  S  S  T  R  Y  C  D  T  I  N  F  L  L  D  Q  I  Y  K  V  L  V  I  D  L  S  I  I  I  F  N  Y  R  I  K  *  F  V  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104531" stop="104136"/>
                    <exon start="103891" stop="103627"/>
                    <exon start="101933" stop="101683"/>
                    <exon start="101263" stop="101060"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGTKFRVKKKVCERIMEGGSSGNTSTSCLMMMGYGDHENNNNNNGNGNGNGNGNVTICAPPMMMMMPPPPPSLTNNNNAETSSNNILFLPFMDNNNNNPQEDNNSSSSSIKSKIMAHPHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESGVALGEAMDRNGSSDEEVDVNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLANHFPMDMTPSLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="108120" PGL_stop="108418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108120" e_stop="108418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="108120" e_stop="108418" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108120" stop="108418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</gDNA_template>
            <first_frame> P  R  V  L  *  T  L  C  F  W  K  T  T  S  Q  Q  V  S  K  G  H  S  *  N  K  R  H  T  *  L  Y  P  F  *  L  L  G  S  M  P  C  *  V  F  G  R  L  Q  I  F  C  V  H  Y  *  *  L  L  K  D  D  L  G  V  H  D  E  A  *  K  *  S  L  P  E  V  Q  G  V  E  N  F  D  G  K  S  N  R  E  E  D  Q  E  V  A  N  *  *  W   </first_frame>
            <second_frame>  L  E  F  C  E  H  C  V  F  G  K  L  H  R  N  K  F  P  K  A  I  H  R  T  K  G  T  L  D  Y  I  H  S  D  C  W  G  P  C  R  V  E  S  L  G  G  C  R  F  F  V  S  I  I  D  D  Y  S  R  M  T  W  V  Y  M  M  K  H  K  S  E  A  F  Q  K  F  K  E  W  K  I  L  M  E  N  Q  T  G  K  K  I  K  R  L  R  T  D  N  G  </second_frame>
            <third_frame>   *  S  F  V  N  I  V  F  L  E  N  Y  I  A  T  S  F  Q  R  P  F  I  E  Q  K  A  H  L  I  I  S  I  L  I  A  G  V  H  A  V  L  S  L  W  E  A  A  D  F  L  C  P  L  L  M  T  T  Q  G  *  L  G  C  T  *  *  S  I  K  V  K  P  S  R  S  S  R  S  G  K  F  *  W  K  I  K  Q  G  R  R  S  R  G  C  E  L  I  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108121" stop="108417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="108461" PGL_stop="110372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108461" e_stop="110372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="108461" e_stop="110372" e_length="1912"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108461" stop="109566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109563" stop="110372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGGATTGCTCGACATCGCACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGTATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> K  G  L  L  D  I  A  Q  S  E  I  H  H  S  R  T  V  *  L  S  G  *  I  K  H  F  W  R  E  Q  G  A  C  S  L  M  L  G  *  I  E  D  S  G  Q  K  R  L  V  Q  L  A  T  *  L  T  A  D  H  I  Q  V  Y  S  A  R  H  L  W  R  C  G  L  E  K  L  L  I  I  Q  I  *  K  L  L  V  V  R  L  T  I  T  S  V  K  V  S  *  N  Q  E  L  K  R  E  Y  L  W  A  T  E  M  E  *  K  V  S  E  S  G  L  Q  Q  K  R  G  L  L  *  A  G  T  L  S  L  M  K  V  L  C  L  E  P  L  *  S  L  Q  L  R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *  L  S  R  M  V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  R  D  C  S  T  S  H  S  Q  K  Y  T  T  A  E  R  C  S  *  A  D  E  S  N  T  S  G  E  S  K  V  H  A  L  *  C  W  A  R  *  K  I  L  G  R  S  G  *  Y  S  L  L  L  D  *  P  R  T  T  Y  R  Y  T  V  Q  D  T  Y  G  D  V  V  W  K  S  C  *  L  F  K  S  E  S  F  W  L  Y  G  L  L  S  R  Q  *  R  *  V  R  T  K  S  *  K  G  S  I  C  G  L  R  R  W  S  E  R  F  Q  N  L  V  S  S  R  K  E  G  Y  Y  E  Q  E  R  C  L  *  *  K  S  S  A  *  N  H  C  E  A  Y  N  Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  S  A  G  W  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   G  I  A  R  H  R  T  V  R  N  T  P  Q  Q  N  G  V  A  E  R  M  N  Q  T  L  L  E  R  A  R  C  M  L  S  N  A  G  L  D  R  R  F  W  A  E  A  V  S  T  A  C  Y  L  I  N  R  G  P  H  T  G  I  Q  C  K  T  P  M  E  M  W  S  G  K  A  A  D  Y  S  N  L  K  A  F  G  C  T  A  Y  Y  H  V  S  E  G  K  L  E  P  R  A  K  K  G  V  F  V  G  Y  G  D  G  V  K  G  F  R  I  W  S  P  A  E  K  R  V  I  M  S  R  N  V  V  F  D  E  S  P  L  L  R  T  I  V  K  P  T  T  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T  Q  P  D  G  F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108463" stop="110370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1908</number_coding_nucleotides>
                  <number_encoded_amino_acids>636</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="126423" PGL_stop="128550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126423" e_stop="126495"/>
            <exon e_start="126653" e_stop="126744"/>
            <exon e_start="126838" e_stop="126937"/>
            <exon e_start="127021" e_stop="127399"/>
            <exon e_start="128377" e_stop="128550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="0.967"/>
          <exon-intron don_prob="0.229" acc_prob="0.000" e_score="0.980"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.966"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="126423" e_stop="126495" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="126496" i_stop="126652" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="126653" e_stop="126744" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="126745" i_stop="126837" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="126838" e_stop="126937" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.229" acc_prob="0.000">
            <gDNA_intron_boundary i_start="126938" i_stop="127020" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="127021" e_stop="127399" e_length="379"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="127400" i_stop="128376" i_length="977"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="128377" e_stop="128550" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126423" stop="126495"/>
              <exon start="126653" stop="126744"/>
              <exon start="126838" stop="126937"/>
              <exon start="127021" stop="127399"/>
              <exon start="128377" stop="128550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG : AAAATGTCTGAAACAAATGCAAAGAATCGAAAAAAATGATGAATCCACACACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG : GAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACTTGGTCGTTTGTACAAGGTCTCAAATGAAGATACTACTA : TAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTAATGCATTTTCAAGCGTCATGGATCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAGTTTGGCAATTTGGAATCAACTTTAAGTGCAACAACTGATGGAATGTAGCAAATGAAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGAAGGATTAATTGATCCTAACATATTGACAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTCTGTTCAAGGGGCTAAACAAG : GTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTGGATGCTATAAAAAGATTTGTATATTTT</gDNA_template>
            <first_frame> K  K  A  W  S  Y  S  R  M  S  I  *  R  A  P  Q  I  L  E  F  *  K  I  Q   : E  N  V  *  N  K  C  K  E  S  K  K  M  M  N  P  H  T  T  G  K  K  S  F  A  L  V  R  N  K  L  :  E  K  D  K  E  T  V  S  S  K  D  L  F  V  V  T  R  T  R  K  L  G  R  L  Y  K  V  S  N  E  D  T  T   : I  G  *  N  G  G  N  *  K  T  N  K  H  K  W  *  V  C  *  C  I  F  K  R  H  G  S  *  T  S  G  T  S  K  T  I  W  R  R  S  Y  K  D  Y  F  E  K  K  V  W  Q  F  G  I  N  F  K  C  N  N  *  W  N  V  A  N  E  R  E  D  A  E  N  G  E  T  D  G  G  T  K  E  N  C  A  T  R  S  Y  C  R  C  Y  C  T  T  *  A  *  R  I  N  *  S  *  H  I  D  S  I  V  D  S  F  T  K  R  I  Y  F  C  S  R  G  *  T  R :   *  *  N  R  R  K  G  *  K  Q  *  *  R  L  D  I  G  A  E  V  Y  I  D  V  N  F  I  D  V  L  E  I  I  Y  F  *  R  L  K  I  L  W  H  V  F  H  L  F  W  M  L  *  K  D  L  Y  I   </first_frame>
            <second_frame>  K  K  P  G  H  I  P  E  C  Q  F  R  E  L  L  K  Y  W  N  S  E  K  F  K  :  K  M  S  E  T  N  A  K  N  R  K  K  *  *  I  H  T  L  L  A  K  R  V  S  L  *  F  V  I  S  W :   R  K  I  R  R  Q  Y  H  L  R  I  S  L  W  L  Q  E  Q  E  N  L  V  V  C  T  R  S  Q  M  K  I  L  L  :  *  A  E  M  E  E  I  E  K  Q  I  S  I  N  G  E  Y  V  N  A  F  S  S  V  M  D  P  E  H  P  G  R  L  R  L  Y  G  A  G  V  T  K  T  T  L  K  K  K  F  G  N  L  E  S  T  L  S  A  T  T  D  G  M  *  Q  M  K  E  R  M  Q  K  M  E  K  Q  M  E  E  Q  K  K  I  V  R  Q  E  V  I  A  D  V  I  A  Q  L  K  H  E  G  L  I  D  P  N  I  L  T  A  L  S  T  P  S  P  R  E  S  T  S  V  Q  G  A  K  Q   : G  D  E  I  E  E  R  D  E  S  S  S  E  D  L  T  *  E  L  K  Y  I  L  M  *  T  L  L  M  F  *  K  S  Y  I  F  E  D  *  K  F  Y  G  M  C  F  T  F  F  G  C  Y  K  K  I  C  I  F  </second_frame>
            <third_frame>   K  S  L  V  I  F  Q  N  V  N  L  E  S  S  S  N  I  G  I  L  K  N  S  R :   K  C  L  K  Q  M  Q  R  I  E  K  N  D  E  S  T  H  Y  W  Q  K  E  F  R  F  S  S  *  *  A   : G  E  R  *  G  D  S  I  I  *  G  S  L  C  G  Y  K  N  K  K  T  W  S  F  V  Q  G  L  K  *  R  Y  Y  Y :   R  L  K  W  R  K  L  K  N  K  *  A  *  M  V  S  M  L  M  H  F  Q  A  S  W  I  L  N  I  R  D  V  *  D  Y  M  A  Q  E  L  Q  R  L  L  *  K  K  S  L  A  I  W  N  Q  L  *  V  Q  Q  L  M  E  C  S  K  *  K  R  G  C  R  K  W  R  N  R  W  R  N  K  R  K  L  C  D  K  K  L  L  Q  M  L  L  H  N  L  S  M  K  D  *  L  I  L  T  Y  *  Q  H  C  R  L  L  H  Q  E  N  L  L  L  F  K  G  L  N  K  :  V  M  K  S  K  K  G  M  K  A  V  V  K  T  *  H  R  S  *  S  I  Y  *  C  K  L  Y  *  C  S  R  N  H  I  F  L  K  I  E  N  S  M  A  C  V  S  P  F  L  D  A  I  K  R  F  V  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127213" stop="127399"/>
                    <exon start="128377" stop="128426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMKERMQKMEKQMEEQKKIVRQEVIADVIAQLKHEGLIDPNILTALSTPSPRESTSVQGAKQGDEIEERDESSSEDLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="139578" PGL_stop="136823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139578" e_stop="139191"/>
            <exon e_start="138779" e_stop="138684"/>
            <exon e_start="138603" e_stop="138504"/>
            <exon e_start="138418" e_stop="138357"/>
            <exon e_start="138211" e_stop="138123"/>
            <exon e_start="137370" e_stop="137250"/>
            <exon e_start="137168" e_stop="136823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.463" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139578" e_stop="139191" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="139190" i_stop="138780" i_length="411"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138779" e_stop="138684" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="138683" i_stop="138604" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138603" e_stop="138504" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.463" acc_prob="0.972">
            <gDNA_intron_boundary i_start="138503" i_stop="138419" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="138418" e_stop="138357" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="138356" i_stop="138212" i_length="145"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="138211" e_stop="138123" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="138122" i_stop="137371" i_length="752"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="137370" e_stop="137250" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.991">
            <gDNA_intron_boundary i_start="137249" i_stop="137169" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="137168" e_stop="136823" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139578" stop="139191"/>
              <exon start="138779" stop="138684"/>
              <exon start="138603" stop="138504"/>
              <exon start="138418" stop="138357"/>
              <exon start="138211" stop="138123"/>
              <exon start="137370" stop="137250"/>
              <exon start="137168" stop="136823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAACCAAAAAAGAGAAGCAAACCTTTAAAAGATAAAAAAATTCTATGACTTCTCGGAGCAATTCTTTTTCTAATTTCTCAGAATCATCGTACGAATACGATGATAAGGATTGTTCCACCGTCACGACTTCGGATCGGGATGAGCCCCTGAATCCGGGTCATAGGAACAACTCGTTTAACGGGTTATTGGGTTTCACGTTCGGGTCCAAGAAGATGAGGAAGAAGAAACCCTTTTGTCAGGAAAAAGCAATTGTCGGGTTGGCTCTATTGGTGATCGGTTTTGTCGGGATGAATTGGTGGATGCTTTCCCGGATCCAGAACTCGGGTCGGGCTTCTCAGGTTGAGTTCAGGTTCTTGGAAGATAATTCCTCCACTCTATCAATTCGG : GAAGAACTGCTAAGGCTTGGGCTTGGCGAAGAGAGAAAGCCTCAGAAAACAATCTACGCACGATTGCTGGCTAAAGCTGCTCATTCCTTAGCTGAG : GGACAGAAAAAATCCGAGCCAAAAGATTTGTGGGCTGAACCGTATTTTGTTGCTTCCTCTTGGAAACCTTGTGCTGAGCAGCGTCAATGGCTACCTAGTG : AGGGAAAAAATGGTTACATTATTGTCACTGCAAATGGTGGGATAAATCAGCAGCGAGTAGCT : GTCTGCAATATTGTTGCTATTGCAAGATTACTCGATGCAACCTTGGTTCTTCCGAAATTTCTGTACAGTAGTGTTTGGAAAGATGTGAG : CCAGTTTGGCGAGATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTATAGTTAGAGAACTTCCTCAGGAGTTGCAGTCATTAGATCTAGAGGCCATTGGCAGTTTG : GTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAGGTAAACCCATCGAACTTGATATTAGGCTTCCTTGTTGATTTCTCAATTTTTCATATTATCTTCTCATTTAGTCTGATTCCATAATTTCTACCTTGGTTCCTGATTTGGGGACTTCATCTAGAGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGTTCCAAAGATAGAAGAAACTGGAGCTTTACTTATACGGAGA</gDNA_template>
            <first_frame> K  N  Q  K  R  E  A  N  L  *  K  I  K  K  F  Y  D  F  S  E  Q  F  F  F  *  F  L  R  I  I  V  R  I  R  *  *  G  L  F  H  R  H  D  F  G  S  G  *  A  P  E  S  G  S  *  E  Q  L  V  *  R  V  I  G  F  H  V  R  V  Q  E  D  E  E  E  E  T  L  L  S  G  K  S  N  C  R  V  G  S  I  G  D  R  F  C  R  D  E  L  V  D  A  F  P  D  P  E  L  G  S  G  F  S  G  *  V  Q  V  L  G  R  *  F  L  H  S  I  N  S   : G  R  T  A  K  A  W  A  W  R  R  E  K  A  S  E  N  N  L  R  T  I  A  G  *  S  C  S  F  L  S  *   : G  T  E  K  I  R  A  K  R  F  V  G  *  T  V  F  C  C  F  L  L  E  T  L  C  *  A  A  S  M  A  T  *  * :   G  K  K  W  L  H  Y  C  H  C  K  W  W  D  K  S  A  A  S  S   : C  L  Q  Y  C  C  Y  C  K  I  T  R  C  N  L  G  S  S  E  I  S  V  Q  *  C  L  E  R  C  E  :  P  V  W  R  D  L  P  G  G  A  F  H  *  L  P  E  T  *  Y  S  Y  S  *  R  T  S  S  G  V  A  V  I  R  S  R  G  H  W  Q  F   : G  D  R  C  R  C  C  K  R  S  K  A  R  F  L  Q  E  I  Y  S  S  Y  F  T  *  K  R  S  C  S  F  S  W  I  W  E  S  I  G  I  *  P  V  T  T  S  G  A  G  K  P  I  E  L  D  I  R  L  P  C  *  F  L  N  F  S  Y  Y  L  L  I  *  S  D  S  I  I  S  T  L  V  P  D  L  G  T  S  S  R  D  F  D  A  D  V  I  F  M  L  *  N  L  F  Q  R  *  K  K  L  E  L  Y  L  Y  G   </first_frame>
            <second_frame>  R  T  K  K  E  K  Q  T  F  K  R  *  K  N  S  M  T  S  R  S  N  S  F  S  N  F  S  E  S  S  Y  E  Y  D  D  K  D  C  S  T  V  T  T  S  D  R  D  E  P  L  N  P  G  H  R  N  N  S  F  N  G  L  L  G  F  T  F  G  S  K  K  M  R  K  K  K  P  F  C  Q  E  K  A  I  V  G  L  A  L  L  V  I  G  F  V  G  M  N  W  W  M  L  S  R  I  Q  N  S  G  R  A  S  Q  V  E  F  R  F  L  E  D  N  S  S  T  L  S  I  R  :  E  E  L  L  R  L  G  L  G  E  E  R  K  P  Q  K  T  I  Y  A  R  L  L  A  K  A  A  H  S  L  A  E  :  G  Q  K  K  S  E  P  K  D  L  W  A  E  P  Y  F  V  A  S  S  W  K  P  C  A  E  Q  R  Q  W  L  P  S   : E  G  K  N  G  Y  I  I  V  T  A  N  G  G  I  N  Q  Q  R  V  A  :  V  C  N  I  V  A  I  A  R  L  L  D  A  T  L  V  L  P  K  F  L  Y  S  S  V  W  K  D  V  S :   Q  F  G  E  I  Y  Q  E  E  H  F  I  D  Y  L  K  P  D  I  R  I  V  R  E  L  P  Q  E  L  Q  S  L  D  L  E  A  I  G  S  L  :  V  T  D  A  D  V  V  K  E  A  K  P  G  F  Y  K  K  Y  I  L  P  I  L  H  K  N  G  V  V  H  F  L  G  F  G  N  R  L  A  S  D  P  L  P  P  Q  V  Q  V  N  P  S  N  L  I  L  G  F  L  V  D  F  S  I  F  H  I  I  F  S  F  S  L  I  P  *  F  L  P  W  F  L  I  W  G  L  H  L  E  T  S  M  Q  M  *  F  S  C  S  E  I  C  S  K  D  R  R  N  W  S  F  T  Y  T  E  </second_frame>
            <third_frame>   E  P  K  K  R  S  K  P  L  K  D  K  K  I  L  *  L  L  G  A  I  L  F  L  I  S  Q  N  H  R  T  N  T  M  I  R  I  V  P  P  S  R  L  R  I  G  M  S  P  *  I  R  V  I  G  T  T  R  L  T  G  Y  W  V  S  R  S  G  P  R  R  *  G  R  R  N  P  F  V  R  K  K  Q  L  S  G  W  L  Y  W  *  S  V  L  S  G  *  I  G  G  C  F  P  G  S  R  T  R  V  G  L  L  R  L  S  S  G  S  W  K  I  I  P  P  L  Y  Q  F  G :   K  N  C  *  G  L  G  L  A  K  R  E  S  L  R  K  Q  S  T  H  D  C  W  L  K  L  L  I  P  *  L  R :   D  R  K  N  P  S  Q  K  I  C  G  L  N  R  I  L  L  L  P  L  G  N  L  V  L  S  S  V  N  G  Y  L  V  :  R  E  K  M  V  T  L  L  S  L  Q  M  V  G  *  I  S  S  E  *  L :   S  A  I  L  L  L  L  Q  D  Y  S  M  Q  P  W  F  F  R  N  F  C  T  V  V  F  G  K  M  *   : A  S  L  A  R  S  T  R  R  S  I  S  L  T  T  *  N  L  I  F  V  *  L  E  N  F  L  R  S  C  S  H  *  I  *  R  P  L  A  V  W :   *  Q  M  Q  M  L  *  K  K  Q  S  Q  V  S  T  R  N  I  F  F  L  F  Y  I  K  T  E  L  F  I  F  L  D  L  G  I  D  W  H  L  T  R  Y  H  L  R  C  R  *  T  H  R  T  *  Y  *  A  S  L  L  I  S  Q  F  F  I  L  S  S  H  L  V  *  F  H  N  F  Y  L  G  S  *  F  G  D  F  I  *  R  L  R  C  R  C  N  F  H  A  L  K  F  V  P  K  I  E  E  T  G  A  L  L  I  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139541" stop="139191"/>
                    <exon start="138779" stop="138684"/>
                    <exon start="138603" stop="138504"/>
                    <exon start="138418" stop="138357"/>
                    <exon start="138211" stop="138123"/>
                    <exon start="137370" stop="137250"/>
                    <exon start="137168" stop="136941"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNSMTSRSNSFSNFSESSYEYDDKDCSTVTTSDRDEPLNPGHRNNSFNGLLGFTFGSKKMRKKKPFCQEKAIVGLALLVIGFVGMNWWMLSRIQNSGRASQVEFRFLEDNSSTLSIREELLRLGLGEERKPQKTIYARLLAKAAHSLAEGQKKSEPKDLWAEPYFVASSWKPCAEQRQWLPSEGKNGYIIVTANGGINQQRVAVCNIVAIARLLDATLVLPKFLYSSVWKDVSQFGEIYQEEHFIDYLKPDIRIVRELPQELQSLDLEAIGSLVTDADVVKEAKPGFYKKYILPILHKNGVVHFLGFGNRLASDPLPPQVQVNPSNLILGFLVDFSIFHIIFSFSLIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="145660" PGL_stop="145387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145660" e_stop="145387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="145660" e_stop="145387" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145660" stop="145387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAATGCAAAGAGCAAGTGTGGTCAAAAGGCGATCCAGTGATGAATCAGCTTTCACATACAAGACTCCGGATCATGAGACGGTTGACATGCCATAGATAAAACATACACGACGAAGCAGCCTTTGCAATTTTGTAAGTAACTTCTGTGAAGGTCAAGAGTAACTGTGGCAGATGAAACTGGGAGGTGTCAATACCAGGGACATTAAATATGTAATTATTTTTCACATCTTCGTCGTTT</gDNA_template>
            <first_frame> P  P  M  S  E  V  V  Q  A  L  V  R  L  M  Q  R  A  S  V  V  K  R  R  S  S  D  E  S  A  F  T  Y  K  T  P  D  H  E  T  V  D  M  P  *  I  K  H  T  R  R  S  S  L  C  N  F  V  S  N  F  C  E  G  Q  E  *  L  W  Q  M  K  L  G  G  V  N  T  R  D  I  K  Y  V  I  I  F  H  I  F  V  V  </first_frame>
            <second_frame>  P  Q  C  L  K  L  C  K  H  W  F  G  *  C  K  E  Q  V  W  S  K  G  D  P  V  M  N  Q  L  S  H  T  R  L  R  I  M  R  R  L  T  C  H  R  *  N  I  H  D  E  A  A  F  A  I  L  *  V  T  S  V  K  V  K  S  N  C  G  R  *  N  W  E  V  S  I  P  G  T  L  N  M  *  L  F  F  T  S  S  S  F </second_frame>
            <third_frame>   P  N  V  *  S  C  A  S  T  G  S  V  N  A  K  S  K  C  G  Q  K  A  I  Q  *  *  I  S  F  H  I  Q  D  S  G  S  *  D  G  *  H  A  I  D  K  T  Y  T  T  K  Q  P  L  Q  F  C  K  *  L  L  *  R  S  R  V  T  V  A  D  E  T  G  R  C  Q  Y  Q  G  H  *  I  C  N  Y  F  S  H  L  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0175O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 39472 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2192 bytes was the average size of a spliced alignment
$ 23240 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1549 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 37 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:55:03
-->
