<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:41:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720959" ref_strand="+" ref_description="SGN-E720959 [FC12BE02]">
      <seq>aatcggccgaattggcaaattcaaaattacaatcctcaccctcctcaaatcgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtaaaagtcggccgcaacgccaaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatactgaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5742" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6046" g_stop="6729" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="696" r_length="684" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="736"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E720959" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6046" e_stop="6729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAATTCAAAATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGG</genome_strand>
        <mrna_strand>TGGCAAATTCAAAATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAAAAGTCGGCCGCAACGCCAAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348499" ref_strand="+" ref_description="SGN-E348499 [cTOF-30-O16]">
      <seq>aattacaatcctcaccctcctcaaatcgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatactgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5758" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6058" g_stop="6729" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="683"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E348499" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6058" e_stop="6729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGG</genome_strand>
        <mrna_strand>AATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712151" ref_strand="+" ref_description="SGN-E712151 [FB04AB12]">
      <seq>attacaatcctcaccctcctcaaatcgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatactggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5759" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6059" g_stop="6729" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="684"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E712151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6059" e_stop="6729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGG</genome_strand>
        <mrna_strand>ATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689843" ref_strand="+" ref_description="SGN-E689843 [LH_Ea01P09]">
      <seq>ccgttctcaccctcctcaaatcgctttaaaaaaattcaaatctctgtgaaatcggaaaacatgtctcaagttatcgcaagccaccgtgaaaatgccgaaattcacacagatccggtggtttgcaagcagaaatcacttgaacttctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacatcgtagaagtcggccgcaacgccgaaaccggattcgtatggctgaaacagaagaaggcaaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttaccatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttccagtgtcggcttttgaagaggaggaggaagaagaggagaagaagtgaagttgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactataatttatactggattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5766" stop="7032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6063" g_stop="6732" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="680"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E689843" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6063" e_stop="6732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</genome_strand>
        <mrna_strand>CCGTTCTCACCCTCCTCAAATCGCTTTAAAAAAATTCAAATCTCTGTGAAATCGG--AAAACATGTCTCAAGTTATCGCAAGCCACCGTGAAAATGCCGAAATTCACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATCGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACAGAAGAAGGCAAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACCATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCAGTGTCGGCTTTTGAAGAGGAGGAGGAAGAAGAGGAGAAGAAGTGAAGTTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTG--TTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAATTTATACTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693683" ref_strand="+" ref_description="SGN-E693683 [LH_Ea01P09](-)">
      <seq>cctcaccctcctcaaatcgctttaaaaaaattcaaatctctgtgaaatcggaaaacatgtctcaagttatcgcaagccaccgtgaaaatgccgaaattcacacagatccggtggtttgcaagcagaaatcacttgaacttctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacatcgtagaagtcggccgcaacgccgaaaccggattcgtatggctgaaacagaagaaggcaaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctccccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttccagtgtcggcttttgaagaggaggaggaagaagaggagaagaagtgaagttgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatggaaatggaactataatttatactggattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5767" stop="7032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6067" g_stop="6732" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="673"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E693683" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6067" e_stop="6732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</genome_strand>
        <mrna_strand>CCTCACCCTCCTCAAATCGCTTTAAAAAAATTCAAATCTCTGTGAAATCGG--AAAACATGTCTCAAGTTATCGCAAGCCACCGTGAAAATGCCGAAATTCACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATCGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACAGAAGAAGGCAAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCCCCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCAGTGTCGGCTTTTGAAGAGGAGGAGGAAGAAGAGGAGAAGAAGTGAAGTTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTG--TTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGGAAATGGAACTATAATTTATACTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344956" ref_strand="+" ref_description="SGN-E344956 [cTOF-22-E24]">
      <seq>ctcaccctcctcaaatcgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatactggattgtatttctctttctatttggacctttttagctgcatacataaaatctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5768" stop="7082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6068" g_stop="6788" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E344956" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6068" e_stop="6788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATTGTATTTCTCTTTCTATTTGGACCTTTTTAGCTGCATACATAAAATCTACACCTCTG</genome_strand>
        <mrna_strand>CTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATTGTATTTCTCTTTCTATTTGGACCTTTTTAGCTGCATACATAAAATCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318479" ref_strand="+" ref_description="SGN-E318479 [cTOB-10-N4]">
      <seq>caccctcctcaaatcgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5770" stop="6870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6070" g_stop="6570" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E318479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6070" e_stop="6570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAG</genome_strand>
        <mrna_strand>CACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343792" ref_strand="+" ref_description="SGN-E343792 [cTOF-12-I3]">
      <seq>cctcctcaaatcgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattntaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5773" stop="7027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6073" g_stop="6727" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E343792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6073" e_stop="6727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACT</genome_strand>
        <mrna_strand>CCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTNTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690566" ref_strand="+" ref_description="SGN-E690566 [LH_Ea03N12]">
      <seq>cgtctcaaatcgctttaaaaaaattcaaatctctgtgaaatcggaaaacatgtctcaagttatcgcaagccaccgtgaaaatgccgaaattcacacagatccggtggtttgcaagcagaaatcacttgaacttctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacatcgtagaagtcggccgcaacgccgaaaccggattcgtatggctgaaacagaagaaggcaaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttccagtgtcggcttttgaagaggaggaggaagaagaggagaagaagtgaagttgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactataatttatactggataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5777" stop="7031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6074" g_stop="6732" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="670"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E690566" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6074" e_stop="6732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</genome_strand>
        <mrna_strand>CGTCTCAAATCGCTTTAAAAAAATTCAAATCTCTGTGAAATCGG--AAAACATGTCTCAAGTTATCGCAAGCCACCGTGAAAATGCCGAAATTCACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATCGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACAGAAGAAGGCAAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCAGTGTCGGCTTTTGAAGAGGAGGAGGAAGAAGAGGAGAAGAAGTGAAGTTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTG--TTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAATTTATACTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694406" ref_strand="+" ref_description="SGN-E694406 [LH_Ea03N12](-)">
      <seq>ctcaaatcgctttaaaaaaattcaaatctctgtgaaatcggaaaacatgtctcaagttatcgcaagcccccgtgaaaatgccgaaattcacacagatccggtggtttgcaagcagaaatcacttgaacttctgaaggaaatcaacatgcctaatggtcttctcccccttgaagacatcgtagaagtcggccgcaacgccgaaaccggattcgtatggctgaaacagaagaaggcaaaagagcccaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatccccggatgaagaagctccccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttttaggtcttttccagtgtcggcttttgaagaggaggaggaagaagaggagaagaagtgaagttgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttataatctattttaatcctatcctatgtaaccaaagttaaaaaaaaggatggaactataatttatacggataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5777" stop="7031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6077" g_stop="6732" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="672"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E694406" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6077" e_stop="6732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</genome_strand>
        <mrna_strand>CTCAAATCGCTTTAAAAAAATTCAAATCTCTGTGAAATCGG--AAAACATGTCTCAAGTTATCGCAAGCCCCCGTGAAAATGCCGAAATTCACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCCCTTGAAGACATCGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACAGAAGAAGGCAAAAGAGCCCAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCCCCGGATGAAGAAGCTCCCCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTTTAGGTCTTTTCCAGTGTCGGCTTTTGAAGAGGAGGAGGAAGAAGAGGAGAAGAAGTGAAGTTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTG--TTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAAAAAGGATGGAACTATAATTTATAC-GGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691363" ref_strand="+" ref_description="SGN-E691363 [LH_Ea05O17]">
      <seq>ccggttgctttaaaaaattcaaatctctgtgaaatcggaaaccttgtctcaagttatcgcaagccaccgtgaaaatgctgaaattcacacagatccggtggtttgcaagcagaaatcacttgaacttctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacatcgtagaagtcggccgcaacgccgaaaccggattcgtatggctgaaacagaagaaggcaaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaggaagaagaagaggagaagaagtgaagttgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactggtactatttaaataattaaattactggtttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactataatttatactggattannnnnaaaaanaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5783" stop="7032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6079" g_stop="6732" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="670"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E691363" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6079" e_stop="6732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTG-A-A-GAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</genome_strand>
        <mrna_strand>CCGGTTGCTTTAAA-AAATTCAAATCTCTGTGAAATCGG--AAACCTTGTCTCAAGTTATCGCAAGCCACCGTGAAAATGCTGAAATTCACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATCGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACAGAAGAAGGCAAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGTTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTGGTACTATTTAAATAATTAAATTACTG-GTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAATTTATACTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318873" ref_strand="+" ref_description="SGN-E318873 [cTOB-11-I5]">
      <seq>tcgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5783" stop="6852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6083" g_stop="6552" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E318873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6083" e_stop="6552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGA</genome_strand>
        <mrna_strand>TCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695203" ref_strand="+" ref_description="SGN-E695203 [LH_Ea05O17](-)">
      <seq>cgctttaaaaaaattcaaatctctgtgaaatcggaaaacatgtctcaagttatcgcaagccaccgtgaaaatgctgaaattcacacagatccggtggtttgcaagcagaaatcacttgaacttctgaaggaaatcaacatgcctaatggtcttctcccccttgaagacatcgtagaagtcggccgcaacgccgaaaccggattcgtatggctgaaacagaagaaggcaaaagagcccaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctccccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaggaagaagaagaggagaagaagtgaagttgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactggtactatttaaataattaaattactggtttttttataaaggattttaatcctatcctatgtaaccaaagttacctattaaggtggaactataatttatactggattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5784" stop="6998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6084" g_stop="6732" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="672"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E695203" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6084" e_stop="6732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTG-A-A-GAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</genome_strand>
        <mrna_strand>CGCTTTAAAAAAATTCAAATCTCTGTGAAATCGGAAA--ACATGTCTCAAGTTATCGCAAGCCACCGTGAAAATGCTGAAATTCACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCCCTTGAAGACATCGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACAGAAGAAGGCAAAAGAGCCCAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCCCCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGTTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTGGTACTATTTAAATAATTAAATTACTG-GTTTTTTTATAAAGGATTTTAATCCTATCCTATGTAACCAAAGTTACCTATTAAGGTGGAACTATAATTTATACTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695204" ref_strand="+" ref_description="SGN-E695204 [LH_Ea05O18](-)">
      <seq>cgctttaaaaaaattcaaatctctgtgaaatcggaaaacatgtctcaagttatcgcaagcccccgtgaaaatgctgaaattcacacagatccggtggtttgcaagcagaaatcacttgaacttctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacatcgtagaagtcggccgcaacgccgaaaccggattcgtatggctgaaacagaagaaggcaaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatccccggatgaagaagctccccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctcctggactttctaggtcttttcctgtgtcggcttttgaagaggaggaggaagaagaagaggagaagaagtgaagttgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactggtactatttaaataattaaattactggtttttttataatcgattttaatcctatcctatgtaaccaaagttaaaaataaaaggggaactataatttatactggcttaaaaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5784" stop="7032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6084" g_stop="6732" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="665"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E695204" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6084" e_stop="6732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTG-A-A-GAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATT</genome_strand>
        <mrna_strand>CGCTTTAAAAAAATTCAAATCTCTGTGAAATCGGAAA--ACATGTCTCAAGTTATCGCAAGCCCCCGTGAAAATGCTGAAATTCACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATCGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACAGAAGAAGGCAAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCCCCGGATGAAGAAGCTCCCCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTCCTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGTTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTGGTACTATTTAAATAATTAAATTACTG-GTTTTTTTATAATCGATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATAAAAGGGGAACTATAATTTATACTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735262" ref_strand="+" ref_description="SGN-E735262 [LB14DE02]">
      <seq>cgcttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatactggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5784" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6084" g_stop="6729" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="658"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E735262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6084" e_stop="6729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGG</genome_strand>
        <mrna_strand>CGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692109" ref_strand="+" ref_description="SGN-E692109 [LH_Ea07N19]">
      <seq>ttctgtaaaaaattcaaatctctgtgaaatcggaaaacatgtctcaagttatcgcaagccaccgtgaaaatgccgaaattcacacagatccggtggtttgcaagcacaaatcacttgaacttctgaaggaaatcaacatgcctaatggccttctcccacttgaagacatctgtaaaagtcggccgcaacgccgaaaccggattcgtatggctgaaacataacaaggcaaaagagcacaagtataacaagatcgggaagctcgactgggaccatactgatgtgacggcgtttgaggataatcgccggatgaataacctcaccggcgtaaagagcaaggagatcctcatctgggttaccatttctgatatttcaatttccgatcccgagcgtaagaagattaactttgctacccctactggactttctaggtcttttccagtgtccgcttttgaaggaggaggacgaagaagatgagaatatacgaacttgaaggtttcaggggtattttaacgaattaataatgtgttcttttattttactagtactatttaaataattaaatcactgtatttttatactctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactataatttatactgaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5791" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6085" g_stop="6729" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E692109" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6085" e_stop="6729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACAT-TGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAA-GAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGG</genome_strand>
        <mrna_strand>TTCTGTAAAAAATTCAAATCTCTGTGAAATCGG--AAAACATGTCTCAAGTTATCGCAAGCCACCGTGAAAATGCCGAAATTCACACAGATCCGGTGGTTTGCAAGCACAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGCCTTCTCCCACTTGAAGACATCTGTAAAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACATAACAAGGCAAAAGAGCACAAGTATAACAAGATCGGGAAGCTCGACTGGGACCATACTGATGTGACGGCGTTTGAGGATAATCGCCGGATGAATAACCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACCATTTCTGATATTTCAATTTCCGATCCCGAGCGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCAGTGTCCGCTTTTGAAGGAGGAGGACGAAGAAGATGAGAATATACGAACTTGAAGGTTTCAGGGGTATTTTAACGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATCACTG--TATTTTTATACTCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAATTTATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695949" ref_strand="+" ref_description="SGN-E695949 [LH_Ea07N19](-)">
      <seq>gctttaaaaaaattcaaatctctgtgaaatcggaaaacatgtctcaagttatcgcaagccaccgtgaaaatgccgaaattcacacagatccggtggtttgcaagcagaaatcacttgaacttctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacatcgtagaagtcggccgcaacgccgaaaccggattcgtatggctgaaacagaagaaggcaaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttccagtgtcggcttttgaagaggaggaggaagaagaggagaagaagtgaagttgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgatgttttataatctattttaatcctatcctatgtaaccaaaatgaaaaatgaaaatggaactataatttatacgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5785" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6085" g_stop="6726" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="655"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E695949" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6085" e_stop="6726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATAC</genome_strand>
        <mrna_strand>GCTTTAAAAAAATTCAAATCTCTGTGAAATCGGAAAA--CATGTCTCAAGTTATCGCAAGCCACCGTGAAAATGCCGAAATTCACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTTCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATCGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTATGGCTGAAACAGAAGAAGGCAAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCAGTGTCGGCTTTTGAAGAGGAGGAGGAAGAAGAGGAGAAGAAGTGAAGTTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTG--ATGTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAATGAAAAATGAAAATGGAACTATAATTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342671" ref_strand="+" ref_description="SGN-E342671 [cTOF-7-P9]">
      <seq>cttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatactggattgtatttctctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5786" stop="7045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6086" g_stop="6745" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E342671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6086" e_stop="6745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATTGTATTTCTCTTTC</genome_strand>
        <mrna_strand>CTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATTGTATTTCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335741" ref_strand="+" ref_description="SGN-E335741 [cTOE-8-J3]">
      <seq>ttaaaaaaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5787" stop="6761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6087" g_stop="6461" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E335741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6087" e_stop="6461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTT</genome_strand>
        <mrna_strand>TTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311302" ref_strand="+" ref_description="SGN-E311302 [cLEZ-18-A9]">
      <seq>aaaattcaaatctctgtgaaatcggaaaaaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5793" stop="6867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6093" g_stop="6567" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E311302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6093" e_stop="6567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTG</genome_strand>
        <mrna_strand>AAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323847" ref_strand="+" ref_description="SGN-E323847 [cTOC-5-L5]">
      <seq>aaacatgtctcaagtaatcgcaagccaccgtgaaaatgccgaggtttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatttgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5821" stop="6840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6121" g_stop="6540" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E323847" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6121" e_stop="6540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGA</genome_strand>
        <mrna_strand>AAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAGGTTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATTTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715626" ref_strand="+" ref_description="SGN-E715626 [FB14DC07]">
      <seq>gccaccgtgaaaatgccgaaatttacacagatccggtggtttgcaagcagaaatcacttgaactcctgaaggaaatcaacatgcctaatggtcttctcccacttgaagacattgtagaagtcggccgcaacgccgaaaccggattcgtgtggctgaaacagaagaaggcgaaagagcacaagtataagaagatcgggaagctcgtctggtacgatactgaggtgacggcgtttgtggagaatcgccggatgaagaagctcaccggcgtaaagagcaaggagatcctcatctgggttacgatttctgatatttcaatttccgatccggagtgtaagaagattaactttgctacccctactggactttctaggtcttttcctgtgtcggcttttgaagaggaggaagaagaagaggagaagaagtgaagctgaaggtttcaggggtattttaaggaattaataatgtgttcttttattttactagtactatttaaataattaaattactgtttttttttataatctattttaatcctatcctatgtaaccaaagttaaaaatgaaaatggaactatagtttatactgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="5844" stop="60703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6144" g_stop="6729" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6730" i_stop="8340" i_length="1611">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.130" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8341" g_stop="8355" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="601" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E715626" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6144" e_stop="6729"/>
          <exon e_start="8341" e_stop="8355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATTGTATTTCTCTTTCTATTTGGACCTTTTTAGCTGCATACATAAAATCTACACCTCTGATTCATTTTCATATAATTAAGAAATTTACAAAATATAAAATGTGGTGAATTTTGAACTGTAAGAATGTTAAAAATGATTTTACTAGGTAAATATTTCAAAGTTTTTCTTAATTCATTCCACGATTTTTTACGAGCAAAAGATATAACTTCTATTAGTTGATAAGTTATTCACTATAACTTCTGGACCAAGTTAATGTAACTTGATAGAATGAATATAAATATTAATTAATCATGATTATGTACTGTTTATTTTTTTTTTAACCGTGATTTTTAATAGCGTTTTGCGAACCTAACCCATCACATCCGTTGTTTCAAGACGGATGCACCACAATTAATTTCACGAAATTCTAGAAATGTGATGCGTCTATAATGCCTCAGTGGCCCTACTAAGATTCAAACTGAAAGACTTTATTCTCAGTTGAGCTATGCAGATTTATGATTATATACTGTCATTTGTATGTTTATATATGCGTAGCTATTATTTATTCATTTGAAATAAATATCGATATAAATGCTTATCACCTACTCAATCACAAAATTCTCATCCCAAAATAAACAAAAAGGAAAAAAAAAGGATATTACTCCTATAAGAAGAAAAGGCAGAAAAAGACGGTACATGCCATGAATTTGGAAATCGAATAGGTGAATTTTTTATTTTTTATTCCTCGATGAGTATTTGAGTTTAATAAAATAAATTAGATTTATATTGAAAAGTTTATATATTAAAAAATATAAATTAAAAATTTCTAATTAAGAAATGAATAACTCTATACTCAAGAACTCTCTATAAAATAAATAAAATAATACTTATAACTCCGTCGTGTATCTTGGTGGATAAGCAGCTGGAGTTAAGTTCTGAAAAACAAATGAGGACAGATAGCAATTAAGAGAGGAGAAGGTAGGTGACCTAAATTTTAATTGTCATATGAGTGTGTAATAGGCACAGCTAAATGGGTGCCTAAATTACAACGTGTCAGTGTGTAACAGCATTTTAAAAAAGACAAGATAATAATAATTAATATAATAAAGTTATAATTTAATTTTTATTAAATATGATTTCAAAAAAGAATGAATTAAAATTTAGAATTTTTTAAAAAGTTTAAATGAGAGTATAATAGGTAAACAAAATTTATTCTTTCTTGATTTGTCAAAATGGACAAGTAAATAAGGACATCTAAAAGAGAAAATATCGACAAGTAAATAGGGGCAGAGGGAGTAATAAATAGGGAAAAGACACAGATTCCCTGTTAAACTTATCTCGAAAAGTCAGATACACGCTTAGAATATCGTGATGACTTATTATACATCTGAACTTGTTTAAAGTGATATTAATGACCCCTTCCAAAGACAATCCCAATTTTTGTGTGAGAAAATGTTATACACACGTTTTAATGATGTAAATAATATTTTTTTATATCTTTCTTTTAACCTTTTCCCTTAATATTTTCTCACACTTCCCAACATAGTTGTTTCTACTATTTGTGTTTTTCCTCCCCTCTCCGTCCTTTTACTTTTTTAAATTCATTTCTTCTTCGTTCTTCATAAACTGAAGCAAAAAGAGAGAAAA</genome_strand>
        <mrna_strand>GCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745439" ref_strand="+" ref_description="SGN-E745439 [GI|47105639]">
      <seq>gaatcttcagttcaaacaaaatctgaacaaagggtttttggatctgtagcaaaatttcaacaaagatgtttcttacaagaactgagtatgatagaggtgttaacactttctcgcctgaaggacgattgtttcaagttgaatatgctattgaagctatcaagttgggttcaactgcaattggattgaagactaaggaaggagttgttcttgctgtggagaagcgcattacttcaccacttctggagccaagcagtgtggagaaaattatggaaatcgacgagcatattggctgtgcaatgagtggattgatagctgatgcacgaacacttgtggaacatgcacgggttgaaactcagaaccatagattctcttatggcgagcccatgactgttgagtccactacccaagctctctgtgatttggcgttgcgatttggtgagggcgatgaagaatctatgtccaggccttttggtgtgtcccttctcattgctggtcatgatgagaatggtcccagcttgtactatactgatccttctggtacattctggcaatgcaatgctaaagctattgggtcaggttctgaaggtgctgatagctctttgcaggagcagtataacaaggaccttacccttaaagaggctgaaaccatagcactgtccattctcaagcaagtgatggaagagaaggtgactcccaataatgttgatattgcgagggtatctccaacttaccatctatactcaccatcggaggtggaagaggttatcagccgcctataagaaagcatgtgatcacgctcgttatgatatttttcttgtatgacaaaaacactttcttgttgctgcagccctggagcctggaggtcattggattgttttttccttcttccaaggctaggaattgattcagacaagtgttttctgtatgttcattacattatttgcttcaaggatttaagtccatctatatctcttgctgctttatgagttgggatttgttctgaaaataggagttttaaagtgttttgaaagcaagaggcaagtacgatactgtgtaggattatataaataggggtttacattttcttgaatgaaatatttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="10360" stop="44628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10659" g_stop="10737" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10738" i_stop="10843" i_length="106">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10844" g_stop="10925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="161" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11039" g_stop="11119" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="242" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12092" g_stop="12205" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="356" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12304" g_stop="12405" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="458" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12406" i_stop="13576" i_length="1171">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13577" g_stop="13635" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="517" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13636" i_stop="15000" i_length="1365">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15001" g_stop="15103" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="620" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15104" i_stop="15749" i_length="646">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15750" g_stop="15815" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="686" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15816" i_stop="15895" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15896" g_stop="16314" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="1105" r_length="419" r_score="0.998"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16315" i_stop="17775" i_length="1461">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.236" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="17776" g_stop="17789" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1106" r_stop="1119" r_length="14" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E745439" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1119</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10659" e_stop="10737"/>
          <exon e_start="10844" e_stop="10925"/>
          <exon e_start="11039" e_stop="11119"/>
          <exon e_start="12092" e_stop="12205"/>
          <exon e_start="12304" e_stop="12405"/>
          <exon e_start="13577" e_stop="13635"/>
          <exon e_start="15001" e_stop="15103"/>
          <exon e_start="15750" e_stop="15815"/>
          <exon e_start="15896" e_stop="16314"/>
          <exon e_start="17776" e_stop="17789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCAGTTCAAACAAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAGGTAAAATTTGCATTTGTTTGGTGCTTAATCTACTTTTTTTTTGTTCAATGAAATCGGAATTGAATGATTTTGTTTTCTTCCTGTATTTTGGAAATTGGGTATGAAGAACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAGGTAAATTCTTTGATTTTTGCTTCCTGTGTGAATTTTTTTTTGGGGGACTGAAAATAGCTGATGGGTGTTTTTTTTTTTTGGTTTTATGGTTTTGAAATTACGATTTTTTGAAGTTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTGGTTTGTAACACTTGTTTCCGATGTTTTTTTGTTACTTCTGTATGGTTTACTGATTATGTTCATGGGTTATGGTTGGATGGTAAGTTCAATTTTTCAGCAATAACATCTATAAGAAATGCTGGTAGAGCTTCACCGATGTAAATTGAAGTATGAATTTTGTGGGGCAGAGGATTGGGGAAATGATTGCTAATTGTTGGAATCTTGTAATTTTGTGAAAGGAGTTCTTCCCCCTCCGCAACACAACTCAACTTGTACATGTCTCTGCGTTTAACTATGTGGCTGCTCATTTTCCTTTGAAATTTTCTTAATTGACATTGACATCGACATTGGAAGCAGTGGGTTTTTTCTAAATTAAATTGTAAAAACATTGAATGGTCACTTTATGAGGAAACAATGGAGCATGTCTGAATATGGTTGGAGTTGTGGTTCATATGAAGAATGTTGGGGCGTTAACCTTAATTTCCTCTAACTCGATTAATGAAAGTTACAACTTCACTGATGGGAAAAAGTAAAACCCTTTTTGCCTCTCAAAAGGCAATGCCAACCCTATATGTCTGTATTCTGAAGTCTCTTTTCTAGTGTCACCATATCATTGGAGCCTGAACGTACTTGATTTTAGAAAAATCATTTGTGCTAACTATTAGTTGACACTGTTTGGTGCTTAGTATATCATTGGTAATACCTACATTTTAACAGTTAAACTTGGTGGTCTCTTTTGGGGCATCTGATGAAATTGAAATGAAACAGTTAAACTTGGTGGCAGAGATATCCATAGTAGGCTACACGGCTTATAGATCAAGAATTAGAAAAGCTACAGACCTATTTCCCTTTAATTGGTTGCTTGGCTATCACTCTATTTTGTGTACTCAGTTGGTTCATCTAAATAATAGAGAACATGCTATACGCTCGCCTCATAACTTCAGTTTATTTTCTGTATTATTCATTCATGACACCGTTTTGATATTCTTTTAGGAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAGGTATTTAGGATAACATCTCCAACCTTCAAGTATTTGTGTGATAGTGGTAAATTGCTGATTTTGTGGTGTTGTTTTGTCCTCTCTTCCCCTTTCAACAGAACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATGGTGAGATTCGTTTTACTTTAGTATAGTACTGTTTGTTTCTCTATGAACAACTATCTTTCTGTGAAAAATTAGTGGTGCCTTATTTTGTAGAAAGCATCTTTTCCATTTTCCAATATTATCTTTTGCTGTCCCTTGTTATTTTGACTAAAAAGTATTAGTTGGAACTAAACAGATGACTTTATATGAAGTGGAATTTAGATTTTAAGCTAGTTATGTTAATTTCATCAAGTGAATAAGTAAAATAAATATAAACCAGCAACTACTTCATGTGACATAAGGTGAAAATAAATATAATTAGTGATAGGTCCTTGTTCCCTTCGCTTTATGTTTCACTAAAGGACTTGTGCATGTATCAAGTGCTCTCGAACATTGCCTATGCTGACTTTAGAATGAAAAGGTAACGGGTCACTACATTTATCTCCTCCCCCCTCCAAAAAAGAGATCAGTGATCAGCATGAAGATTTTTAGGCAGTGATCATCTCTGTATGTGTCTGTTTCTCAATTTGTAGTTGTATTTCAAATGCTCTTGCATATGCCAGCTGGGTAGTGATAGATCTAGAGGCTGGCTGTTGAGTCTGAGATCCTCTTAGATGCTAGGACCTAGGATCATAGTTTATCAGCTATATAAGTGCATTTGCTCTTCTCTTTACATTCTATATTCTATGGAAAAATGATGCATGATACTCATGAACTTTGTTTGTAAAGAACTCATGAAGTTAGAGTGGTGATTCTATATGGTGTAAGCTGGACTGCTGGACAAAAGATATGCTTAGCCTGTCTGGTTATCTTGGACAAAAGGAAAGGGGAGAACGGAAGATGGCAAAGGGTTAATTATGATTTAACTAGTTAATTAAGTTGTTTATGGAATTACCTGGTTAATCATGATCATATTCTGTGGTGTGCATTTTGCTCTACTGACTGTCTTGTGCTGATCTAGTTTCTTCATTTCCTTTTTGTTTTATTTGATAACATATTCTAATAAGTTGGATGTCTGGAGATTATCAGTGTTGTTGATGAAGTTTGTCAGAAGAAATAGACATTCTTCCGTAGTTTCTACAGTTGACTTACTCATCAGCAGGATTAGATTTTCCCTTATTGTATGTTTTGAGTATTGTAAGGTCAGATCTCTTACCTTTATGTATTAATGGTCTATCTCGTTTGTTTTATGCAGTCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTTGTAAGTCTTTGCACCTCTTCTACGCTAGTATTGGAAACTATGATATTTTCTTTTCAATATTTTCTTCTCTTGGTATTGAATCAAGTCTGATAGAGCTGCCGGAATGTTATCTTTCAGAGAACTTCCTTCTTCTCCCAAATTTCTTTCGAATACTACTTTGACTTTGGCTAAGTTGGACTTATGCATATTGGATCTCGAGAAAACGATGTACAATATTTGACTAGATATTCCACTGCATCTCAGATGCATTAATACTAAATCTCATGGGAAAAAACCTTTACACTTTTTTAGACAACTCCTTTCCACTTATATGACCATGTTTTTTATAAATCTCATCAAATCACTCTAATCTACACAAATCATCTTAATATAGCATGGAACATCACTTCTAAAATTTTTATTCTATTTTTGTTAGATAATGAGCTTTTTTTAATGTAAATGAAAAATTCTATCTCAATTAGTTGAAAAATGCTTTCATATACATTGAATATTAAGCACTTAATATATTACTCCCTCTAGTTCATATTAAGTGAATTGTTGGGGTATGACACACACGTTAAGAAAAATATACAAGGATATAAAATCAAAGACTATTTTCCACTATTACCCTTTTGATTATTCCCAAATTTTTCTCCTAGAAAATGTGAAGTAGTTACGAACCTCATTAAATGAAGGGTAAATATAGAAAAAGTCCTAGCAATTCTCTTGAACTTTGAATACACTTCATTTAATTTGAACTATGAAAAAGGTACCAACAATTCACAACAGTCATTGGTCGTTGCGTATTGGCCTGAGCTCAACAAGGATGATTGTGTATTAGCCTACCTGTCATGGTTGTCACATTTGGTGTCTTATGTATTAGGCACTGGTTCACTTAAACCTACCTCTCCAAAATTACTAAAATGTTGCTCTAATATTATCTCCTAATCCCTTGTTATAGTCTTTTGAGCCAAGGGTCTATAAGGAAGAGCCTCTCTACCCTCCCCCCCCCCCCCACTAAGGTAGGGGTAAGGTCTACATACATACTATCTTCCTAGACCCTACTTGTGGGATTACAGTGGGGTATGTTGCTGCTGTTGTTATTGTTGTTAATGAATATTAAATACTGAAGAGGTCAAGAGATCACATTCCTGGAAATGATTCTACCAACTGGCCATGATCGATTGGGCTTTTGTGTGATGAGCTGCTAAAATCAGACTTTTGTCTATATTCCTAAGAGAATACTGGAAACAGAATTTCATAAGCATACTGTTAACATTACATAGTTTATTCAAGTGTTCGGCCTCTCATTACTTACTAACCTGATTGTGGGTATTAAGCAACATAATTTGTAGATACTGAATGTCGCCCAATTCTGATGTGCAGGTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAGGTATCTAGGTTTTTTTATTTTTCTAGTGAAACCGTGACCCGTAGTCCTAATTACAGTCCAGTCTGCAGCAGGCTGGAGGTAATGTTGCTAGTGGAAGATGTAATAATAGGTCCTGTTCCTTTTTTTATTCACCCTCATTTCAACTGTTTGGATGCTTGAATGCTGGTGAACTTCATGAGTTCCGCATAAAGTATCTTGGTGGAAGCCGAGAAGTAGAGGAGGATTCCCCTCCTTGTATTTTTGCCCTAAATAGCTCAGCTCAAACATGCTGTCCAACCTTATTAGTCCGAGTAGCTAGTTTGGTTGGTGATGCGGTCACCCACTTGTACGTTTTCAAATAAGCATGCTAGCCTTCACACCTCCGAAATTAGATGTTTGTGGAACAAGTATTCAAGAAATCTCGTGTTCTATCTTCGTAACTGTTGTCCAGTCTGCAGCAGCTTGGGGTTGTTTGATGCTTTCCGTTGCCTATTCAACCCCTAAGACCATTCCCCTCTTCTCTTCCTCCAATAGAGGGAATTAAATCAGTCACTTTTCACTCATAACATTAAAATTGTAGGTGACTATTTTTGTAACCGAAAAGCTGGAGTTTAGTTTTCATATGGTTCTTAAAGTTGATCTAAAGTCGATTATCTCCTTTCTGCAGGACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAGGTAAGCAATAAGCCTCATGACACTTGTATTTTCATGATTTCGTTCCTTGTTTCTGAGAAAGCTCCCCCTATTTGATTCAGGTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGCTTCAAGGATTTAAGTCCATCTATATCTCTTGCTGCTTTATGAGTTGGGATTTGTTCTGAAAATAGGAGTTTTAAAGTGTTTTGAAAGCAAGAGGCAAGTACGATACTGTGTAGGATTATATAAATAGGGGTTTACATTTTCTTGAATGAAATATTTCCAATGTATCTTAGTTTAATTGGATACGGAATTTAAAAAGTAATGAACTTGCGATTTTTTAAACATAATATGCAACATTTTGAAATTAAAGAATTCTTAGTTAGTTATAAATTGATTCAATGATTAATAAGTATGCAGTTATTTTAATCAAAAATTTGACAATAATTAATAACAGAGAAAATAAAAAATTAGATTTAATTTATCTTTTAATCTACTTTCTTTGGGGTTTATTCCTCATGAACAAATAGTAGTACAAACGAGAAAAATTGAACATATAATATTGTCGCAAATGAAAGAAAATCGAAGTAACATGAGAAATTTATTTGATAGAGTGTATAAGAAATAATAGTATGTTTTTTTGAAATACTTTTTCAAACCCAAGATGCATGGCTTTGTCCCATCAATGTTTGATGGCTAGAGGACCAAAAATAAAAAATAATTAATACATGAAAATTTATGATATTAGTAATGCACTCAGTTTTAACACATGTATTAAAATGATTAAAAATACAACTGTCCCTCAAAACTGTTTTTACATCATTTCCACCATATTTGTGGAGTTTTCTTTTAGAAATTATGACATAGATATTATTTTTAATATACCAAATCAAATAAGATATAAAAAATAATCTCTATATAATTAATTGTACGTACATTATTAATACACCTTATTCAACATTATTCTTCGTAATATTTAATACCTCTGCCAACAAAACAATTTATGAGTTATTAACTCAGAATTCGATACACATAAGGGTGAAAATAAATTTGGTCAAATATGAATTTAATAAAATTGTATTAACTCATATTTACCCCTCTTCATTTATTAAATTGTATTAACTCATATTTACCCCTCTTCATTGTTATCTTGAGTTTTCTCTATAAACACAGAGAAATTTTTCTCTTATCGTTCTTGTTGTTTCATCAATCTTCATAACCAAGTCAATGTTGAAAATTATGTCAGATGAATATGCATATGATGGTTGTTGTCTATATTATTGTATAGTTAGTTTAAGTATAATATTTATTTTAATGGTCATTTAGATTTTATTATATCGTATTTAGGTAAATATGATATGGTGTGATTATGTGTTACCTTATTATTTTCTTTTTATTTTGTCTTTATGTAATAGTTTAAAAATTCTATTTTATCATTTACTCTATCTTTCATAGTACTTGTACATCGTTTTCTAATTTTCCTGTAGGTTTATCATTCGAATTATGAAAGTGTGATATTAGAAACAACGTAATATAATACAACCTATCCAAATATTATATTTATTTAAAATGTACGATACAAATATATAATATGATATGATCGATTGTGAAATAATAATGAAATAACTCAACTTTCTTTGGATCGAATGTTATATCAATTGAAATTAACCATGTACCTAGTCTGATTCATGATTTGCCGGATATTAAGCATGACCAATGTAACATCGAATTTCATAACATGGTAACAGAATACTAAAAGAAA</genome_strand>
        <mrna_strand>GAATCTTCAGTTCAAACAAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAG..........................................................................................................AACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAG.................................................................................................................TTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAG..................................................................................................AACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAG................................................................................GTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGCTTCAAGGATTTAAGTCCATCTATATCTCTTGCTGCTTTATGAGTTGGGATTTGTTCTGAAAATAGGAGTTTTAAAGTGTTTTGAAAGCAAGAGGCAAGTACGATACTGTGTAGGATTATATAAATAGGGGTTTACATTTTCTTGAATGAAATATTTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200558" ref_strand="+" ref_description="SGN-E200558 [cLEB-8-H24]">
      <seq>gcacgagaatctgaacaaagggtttttggatctgtagcaaaatttcaacaaagatgtttcttacaagaactgagtatgatagaggtgttaagactttctcgcctgaaggacgattgtttcaagttgaatatgctattgaagctatcaagttgggttcaactgcaattggattgaagactaaggaaggagttgttcttgctgtggagaagcgcattacttcaccacttctggagccaagcagtgtggagaaatttatggaaatcgacgagcatattggctgtgcaatgagtggattgatagctgatgcacgaacacttgtggaacatgcacgggttgaaactcagaaccatagattctcttatggcgagcccatgactgttgagtccactacccaagctctctgtgatttggcgttgcgatttggtgagggcgatgaagaatctatgtccaggccttttggtgtgtcacttctcattgctggtcatgatgagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="10374" stop="13925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10671" g_stop="10737" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10738" i_stop="10843" i_length="106">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10844" g_stop="10925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="149" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11039" g_stop="11119" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="230" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12092" g_stop="12205" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="344" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12304" g_stop="12405" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="446" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12406" i_stop="13576" i_length="1171">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13577" g_stop="13625" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="495" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E200558" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10671" e_stop="10737"/>
          <exon e_start="10844" e_stop="10925"/>
          <exon e_start="11039" e_stop="11119"/>
          <exon e_start="12092" e_stop="12205"/>
          <exon e_start="12304" e_stop="12405"/>
          <exon e_start="13577" e_stop="13625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAGGTAAAATTTGCATTTGTTTGGTGCTTAATCTACTTTTTTTTTGTTCAATGAAATCGGAATTGAATGATTTTGTTTTCTTCCTGTATTTTGGAAATTGGGTATGAAGAACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAGGTAAATTCTTTGATTTTTGCTTCCTGTGTGAATTTTTTTTTGGGGGACTGAAAATAGCTGATGGGTGTTTTTTTTTTTTGGTTTTATGGTTTTGAAATTACGATTTTTTGAAGTTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTGGTTTGTAACACTTGTTTCCGATGTTTTTTTGTTACTTCTGTATGGTTTACTGATTATGTTCATGGGTTATGGTTGGATGGTAAGTTCAATTTTTCAGCAATAACATCTATAAGAAATGCTGGTAGAGCTTCACCGATGTAAATTGAAGTATGAATTTTGTGGGGCAGAGGATTGGGGAAATGATTGCTAATTGTTGGAATCTTGTAATTTTGTGAAAGGAGTTCTTCCCCCTCCGCAACACAACTCAACTTGTACATGTCTCTGCGTTTAACTATGTGGCTGCTCATTTTCCTTTGAAATTTTCTTAATTGACATTGACATCGACATTGGAAGCAGTGGGTTTTTTCTAAATTAAATTGTAAAAACATTGAATGGTCACTTTATGAGGAAACAATGGAGCATGTCTGAATATGGTTGGAGTTGTGGTTCATATGAAGAATGTTGGGGCGTTAACCTTAATTTCCTCTAACTCGATTAATGAAAGTTACAACTTCACTGATGGGAAAAAGTAAAACCCTTTTTGCCTCTCAAAAGGCAATGCCAACCCTATATGTCTGTATTCTGAAGTCTCTTTTCTAGTGTCACCATATCATTGGAGCCTGAACGTACTTGATTTTAGAAAAATCATTTGTGCTAACTATTAGTTGACACTGTTTGGTGCTTAGTATATCATTGGTAATACCTACATTTTAACAGTTAAACTTGGTGGTCTCTTTTGGGGCATCTGATGAAATTGAAATGAAACAGTTAAACTTGGTGGCAGAGATATCCATAGTAGGCTACACGGCTTATAGATCAAGAATTAGAAAAGCTACAGACCTATTTCCCTTTAATTGGTTGCTTGGCTATCACTCTATTTTGTGTACTCAGTTGGTTCATCTAAATAATAGAGAACATGCTATACGCTCGCCTCATAACTTCAGTTTATTTTCTGTATTATTCATTCATGACACCGTTTTGATATTCTTTTAGGAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAGGTATTTAGGATAACATCTCCAACCTTCAAGTATTTGTGTGATAGTGGTAAATTGCTGATTTTGTGGTGTTGTTTTGTCCTCTCTTCCCCTTTCAACAGAACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATGGTGAGATTCGTTTTACTTTAGTATAGTACTGTTTGTTTCTCTATGAACAACTATCTTTCTGTGAAAAATTAGTGGTGCCTTATTTTGTAGAAAGCATCTTTTCCATTTTCCAATATTATCTTTTGCTGTCCCTTGTTATTTTGACTAAAAAGTATTAGTTGGAACTAAACAGATGACTTTATATGAAGTGGAATTTAGATTTTAAGCTAGTTATGTTAATTTCATCAAGTGAATAAGTAAAATAAATATAAACCAGCAACTACTTCATGTGACATAAGGTGAAAATAAATATAATTAGTGATAGGTCCTTGTTCCCTTCGCTTTATGTTTCACTAAAGGACTTGTGCATGTATCAAGTGCTCTCGAACATTGCCTATGCTGACTTTAGAATGAAAAGGTAACGGGTCACTACATTTATCTCCTCCCCCCTCCAAAAAAGAGATCAGTGATCAGCATGAAGATTTTTAGGCAGTGATCATCTCTGTATGTGTCTGTTTCTCAATTTGTAGTTGTATTTCAAATGCTCTTGCATATGCCAGCTGGGTAGTGATAGATCTAGAGGCTGGCTGTTGAGTCTGAGATCCTCTTAGATGCTAGGACCTAGGATCATAGTTTATCAGCTATATAAGTGCATTTGCTCTTCTCTTTACATTCTATATTCTATGGAAAAATGATGCATGATACTCATGAACTTTGTTTGTAAAGAACTCATGAAGTTAGAGTGGTGATTCTATATGGTGTAAGCTGGACTGCTGGACAAAAGATATGCTTAGCCTGTCTGGTTATCTTGGACAAAAGGAAAGGGGAGAACGGAAGATGGCAAAGGGTTAATTATGATTTAACTAGTTAATTAAGTTGTTTATGGAATTACCTGGTTAATCATGATCATATTCTGTGGTGTGCATTTTGCTCTACTGACTGTCTTGTGCTGATCTAGTTTCTTCATTTCCTTTTTGTTTTATTTGATAACATATTCTAATAAGTTGGATGTCTGGAGATTATCAGTGTTGTTGATGAAGTTTGTCAGAAGAAATAGACATTCTTCCGTAGTTTCTACAGTTGACTTACTCATCAGCAGGATTAGATTTTCCCTTATTGTATGTTTTGAGTATTGTAAGGTCAGATCTCTTACCTTTATGTATTAATGGTCTATCTCGTTTGTTTTATGCAGTCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATG</genome_strand>
        <mrna_strand>GCACGAGAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAG..........................................................................................................AACTGAGTATGATAGAGGTGTTAAGACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAG.................................................................................................................TTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAAGCAGTGTGGAGAAATTTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAG..................................................................................................AACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCCTTTTGGTGTGTCACTTCTCATTGCTGGTCATGATGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348655" ref_strand="+" ref_description="SGN-E348655 [cTOF-30-F1]">
      <seq>aaaatctgaacaaagggtttttggatctgtagcaaaatttcaacaaagatgtttcttacaagaactgagtatgatagaggtgttaacactttctcgcctgaaggacgattgtttcaagttgaatatgctattgaagctatcaagttgggttcaactgcaattggattgaagactaaggaaggagttgttcttgctgtggagaagcgcattacttcaccacttctggagccaagcagtgtggagaaaattatggaaatcgacgagcatattggctgtgcaatgagtggattgatagctgatgcacgaacacttgtggaacatgcacgggttgaaactcagaaccatagattctcttatggcgagcccatgactgttgagtccactacccaagctctctgtgatttggcgttgcgatttggtgagggcgatgaagaatctatgtccaggccttttggtgtgtcccttctcattgctggtcatgatgagaatggtcccagcttgtactatactgatccttctggtacattctggcaatgcaatgctaaagctattgggtcaggttctgaaggtgctgatagctctttgcaggagcagtataacaaggaccttacccttaaagaggctgaaaccatagcactgtccattctcaaagcagtgatggaagagaaggtgactccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="10376" stop="16119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10676" g_stop="10737" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10738" i_stop="10843" i_length="106">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10844" g_stop="10925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="144" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11039" g_stop="11119" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="225" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12092" g_stop="12205" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="339" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12304" g_stop="12405" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="441" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12406" i_stop="13576" i_length="1171">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13577" g_stop="13635" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="500" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13636" i_stop="15000" i_length="1365">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15001" g_stop="15103" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="603" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15104" i_stop="15749" i_length="646">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15750" g_stop="15815" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="669" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15816" i_stop="15895" i_length="80">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15896" g_stop="15905" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="679" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E348655" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10676" e_stop="10737"/>
          <exon e_start="10844" e_stop="10925"/>
          <exon e_start="11039" e_stop="11119"/>
          <exon e_start="12092" e_stop="12205"/>
          <exon e_start="12304" e_stop="12405"/>
          <exon e_start="13577" e_stop="13635"/>
          <exon e_start="15001" e_stop="15103"/>
          <exon e_start="15750" e_stop="15815"/>
          <exon e_start="15896" e_stop="15905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAGGTAAAATTTGCATTTGTTTGGTGCTTAATCTACTTTTTTTTTGTTCAATGAAATCGGAATTGAATGATTTTGTTTTCTTCCTGTATTTTGGAAATTGGGTATGAAGAACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAGGTAAATTCTTTGATTTTTGCTTCCTGTGTGAATTTTTTTTTGGGGGACTGAAAATAGCTGATGGGTGTTTTTTTTTTTTGGTTTTATGGTTTTGAAATTACGATTTTTTGAAGTTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTGGTTTGTAACACTTGTTTCCGATGTTTTTTTGTTACTTCTGTATGGTTTACTGATTATGTTCATGGGTTATGGTTGGATGGTAAGTTCAATTTTTCAGCAATAACATCTATAAGAAATGCTGGTAGAGCTTCACCGATGTAAATTGAAGTATGAATTTTGTGGGGCAGAGGATTGGGGAAATGATTGCTAATTGTTGGAATCTTGTAATTTTGTGAAAGGAGTTCTTCCCCCTCCGCAACACAACTCAACTTGTACATGTCTCTGCGTTTAACTATGTGGCTGCTCATTTTCCTTTGAAATTTTCTTAATTGACATTGACATCGACATTGGAAGCAGTGGGTTTTTTCTAAATTAAATTGTAAAAACATTGAATGGTCACTTTATGAGGAAACAATGGAGCATGTCTGAATATGGTTGGAGTTGTGGTTCATATGAAGAATGTTGGGGCGTTAACCTTAATTTCCTCTAACTCGATTAATGAAAGTTACAACTTCACTGATGGGAAAAAGTAAAACCCTTTTTGCCTCTCAAAAGGCAATGCCAACCCTATATGTCTGTATTCTGAAGTCTCTTTTCTAGTGTCACCATATCATTGGAGCCTGAACGTACTTGATTTTAGAAAAATCATTTGTGCTAACTATTAGTTGACACTGTTTGGTGCTTAGTATATCATTGGTAATACCTACATTTTAACAGTTAAACTTGGTGGTCTCTTTTGGGGCATCTGATGAAATTGAAATGAAACAGTTAAACTTGGTGGCAGAGATATCCATAGTAGGCTACACGGCTTATAGATCAAGAATTAGAAAAGCTACAGACCTATTTCCCTTTAATTGGTTGCTTGGCTATCACTCTATTTTGTGTACTCAGTTGGTTCATCTAAATAATAGAGAACATGCTATACGCTCGCCTCATAACTTCAGTTTATTTTCTGTATTATTCATTCATGACACCGTTTTGATATTCTTTTAGGAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAGGTATTTAGGATAACATCTCCAACCTTCAAGTATTTGTGTGATAGTGGTAAATTGCTGATTTTGTGGTGTTGTTTTGTCCTCTCTTCCCCTTTCAACAGAACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATGGTGAGATTCGTTTTACTTTAGTATAGTACTGTTTGTTTCTCTATGAACAACTATCTTTCTGTGAAAAATTAGTGGTGCCTTATTTTGTAGAAAGCATCTTTTCCATTTTCCAATATTATCTTTTGCTGTCCCTTGTTATTTTGACTAAAAAGTATTAGTTGGAACTAAACAGATGACTTTATATGAAGTGGAATTTAGATTTTAAGCTAGTTATGTTAATTTCATCAAGTGAATAAGTAAAATAAATATAAACCAGCAACTACTTCATGTGACATAAGGTGAAAATAAATATAATTAGTGATAGGTCCTTGTTCCCTTCGCTTTATGTTTCACTAAAGGACTTGTGCATGTATCAAGTGCTCTCGAACATTGCCTATGCTGACTTTAGAATGAAAAGGTAACGGGTCACTACATTTATCTCCTCCCCCCTCCAAAAAAGAGATCAGTGATCAGCATGAAGATTTTTAGGCAGTGATCATCTCTGTATGTGTCTGTTTCTCAATTTGTAGTTGTATTTCAAATGCTCTTGCATATGCCAGCTGGGTAGTGATAGATCTAGAGGCTGGCTGTTGAGTCTGAGATCCTCTTAGATGCTAGGACCTAGGATCATAGTTTATCAGCTATATAAGTGCATTTGCTCTTCTCTTTACATTCTATATTCTATGGAAAAATGATGCATGATACTCATGAACTTTGTTTGTAAAGAACTCATGAAGTTAGAGTGGTGATTCTATATGGTGTAAGCTGGACTGCTGGACAAAAGATATGCTTAGCCTGTCTGGTTATCTTGGACAAAAGGAAAGGGGAGAACGGAAGATGGCAAAGGGTTAATTATGATTTAACTAGTTAATTAAGTTGTTTATGGAATTACCTGGTTAATCATGATCATATTCTGTGGTGTGCATTTTGCTCTACTGACTGTCTTGTGCTGATCTAGTTTCTTCATTTCCTTTTTGTTTTATTTGATAACATATTCTAATAAGTTGGATGTCTGGAGATTATCAGTGTTGTTGATGAAGTTTGTCAGAAGAAATAGACATTCTTCCGTAGTTTCTACAGTTGACTTACTCATCAGCAGGATTAGATTTTCCCTTATTGTATGTTTTGAGTATTGTAAGGTCAGATCTCTTACCTTTATGTATTAATGGTCTATCTCGTTTGTTTTATGCAGTCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTTGTAAGTCTTTGCACCTCTTCTACGCTAGTATTGGAAACTATGATATTTTCTTTTCAATATTTTCTTCTCTTGGTATTGAATCAAGTCTGATAGAGCTGCCGGAATGTTATCTTTCAGAGAACTTCCTTCTTCTCCCAAATTTCTTTCGAATACTACTTTGACTTTGGCTAAGTTGGACTTATGCATATTGGATCTCGAGAAAACGATGTACAATATTTGACTAGATATTCCACTGCATCTCAGATGCATTAATACTAAATCTCATGGGAAAAAACCTTTACACTTTTTTAGACAACTCCTTTCCACTTATATGACCATGTTTTTTATAAATCTCATCAAATCACTCTAATCTACACAAATCATCTTAATATAGCATGGAACATCACTTCTAAAATTTTTATTCTATTTTTGTTAGATAATGAGCTTTTTTTAATGTAAATGAAAAATTCTATCTCAATTAGTTGAAAAATGCTTTCATATACATTGAATATTAAGCACTTAATATATTACTCCCTCTAGTTCATATTAAGTGAATTGTTGGGGTATGACACACACGTTAAGAAAAATATACAAGGATATAAAATCAAAGACTATTTTCCACTATTACCCTTTTGATTATTCCCAAATTTTTCTCCTAGAAAATGTGAAGTAGTTACGAACCTCATTAAATGAAGGGTAAATATAGAAAAAGTCCTAGCAATTCTCTTGAACTTTGAATACACTTCATTTAATTTGAACTATGAAAAAGGTACCAACAATTCACAACAGTCATTGGTCGTTGCGTATTGGCCTGAGCTCAACAAGGATGATTGTGTATTAGCCTACCTGTCATGGTTGTCACATTTGGTGTCTTATGTATTAGGCACTGGTTCACTTAAACCTACCTCTCCAAAATTACTAAAATGTTGCTCTAATATTATCTCCTAATCCCTTGTTATAGTCTTTTGAGCCAAGGGTCTATAAGGAAGAGCCTCTCTACCCTCCCCCCCCCCCCCACTAAGGTAGGGGTAAGGTCTACATACATACTATCTTCCTAGACCCTACTTGTGGGATTACAGTGGGGTATGTTGCTGCTGTTGTTATTGTTGTTAATGAATATTAAATACTGAAGAGGTCAAGAGATCACATTCCTGGAAATGATTCTACCAACTGGCCATGATCGATTGGGCTTTTGTGTGATGAGCTGCTAAAATCAGACTTTTGTCTATATTCCTAAGAGAATACTGGAAACAGAATTTCATAAGCATACTGTTAACATTACATAGTTTATTCAAGTGTTCGGCCTCTCATTACTTACTAACCTGATTGTGGGTATTAAGCAACATAATTTGTAGATACTGAATGTCGCCCAATTCTGATGTGCAGGTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAGGTATCTAGGTTTTTTTATTTTTCTAGTGAAACCGTGACCCGTAGTCCTAATTACAGTCCAGTCTGCAGCAGGCTGGAGGTAATGTTGCTAGTGGAAGATGTAATAATAGGTCCTGTTCCTTTTTTTATTCACCCTCATTTCAACTGTTTGGATGCTTGAATGCTGGTGAACTTCATGAGTTCCGCATAAAGTATCTTGGTGGAAGCCGAGAAGTAGAGGAGGATTCCCCTCCTTGTATTTTTGCCCTAAATAGCTCAGCTCAAACATGCTGTCCAACCTTATTAGTCCGAGTAGCTAGTTTGGTTGGTGATGCGGTCACCCACTTGTACGTTTTCAAATAAGCATGCTAGCCTTCACACCTCCGAAATTAGATGTTTGTGGAACAAGTATTCAAGAAATCTCGTGTTCTATCTTCGTAACTGTTGTCCAGTCTGCAGCAGCTTGGGGTTGTTTGATGCTTTCCGTTGCCTATTCAACCCCTAAGACCATTCCCCTCTTCTCTTCCTCCAATAGAGGGAATTAAATCAGTCACTTTTCACTCATAACATTAAAATTGTAGGTGACTATTTTTGTAACCGAAAAGCTGGAGTTTAGTTTTCATATGGTTCTTAAAGTTGATCTAAAGTCGATTATCTCCTTTCTGCAGGACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAGGTAAGCAATAAGCCTCATGACACTTGTATTTTCATGATTTCGTTCCTTGTTTCTGAGAAAGCTCCCCCTATTTGATTCAGGTGACTCCCA</genome_strand>
        <mrna_strand>AAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAG..........................................................................................................AACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAG.................................................................................................................TTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAG..................................................................................................AACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAAGCAGTGATGGAAGAGAAG................................................................................GTGACTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265493" ref_strand="+" ref_description="SGN-E265493 [cLEI-14-E4]">
      <seq>aaatctgaacaaagggttttcggatctgtttcataatggcaacaaagatgtttctttcaagaactgagtatgattgaggtgttaacactttctcgcctgaaggacgattgattcaagttgaatatgctattgaagctatcaagttgggttcaactgcaattggattgaatactaaggaacgagttgttcttgctgtggagaagcgcattacttcaccacttctggagccaagcagtgtggagaaaattatggaaatcgacgagcatattggctgtgcaatgagtggattgatagctgatgcaccaacacttgtggaacatgcacgggttgaaactcataaccatatattctcttatggcgagcccatgactgttgagtgcactacccaagctctctgtgatttggcgttgcgatttggtgagggcgatgaagaatctatgtgcaggccttttggtgtgtcccttctcattgctggtcatgatgagaatggtcccagcttgtactatactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="10377" stop="13938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10677" g_stop="10737" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10738" i_stop="10843" i_length="106">
            <donor d_prob="0.948" d_score="0.86"/>
            <acceptor a_prob="0.756" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10844" g_stop="10925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="143" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11039" g_stop="11119" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="224" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12092" g_stop="12205" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="338" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.894" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12304" g_stop="12405" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="440" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12406" i_stop="13576" i_length="1171">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13577" g_stop="13635" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="499" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E265493" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10677" e_stop="10737"/>
          <exon e_start="10844" e_stop="10925"/>
          <exon e_start="11039" e_stop="11119"/>
          <exon e_start="12092" e_stop="12205"/>
          <exon e_start="12304" e_stop="12405"/>
          <exon e_start="13577" e_stop="13635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAGGTAAAATTTGCATTTGTTTGGTGCTTAATCTACTTTTTTTTTGTTCAATGAAATCGGAATTGAATGATTTTGTTTTCTTCCTGTATTTTGGAAATTGGGTATGAAGAACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAGGTAAATTCTTTGATTTTTGCTTCCTGTGTGAATTTTTTTTTGGGGGACTGAAAATAGCTGATGGGTGTTTTTTTTTTTTGGTTTTATGGTTTTGAAATTACGATTTTTTGAAGTTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTGGTTTGTAACACTTGTTTCCGATGTTTTTTTGTTACTTCTGTATGGTTTACTGATTATGTTCATGGGTTATGGTTGGATGGTAAGTTCAATTTTTCAGCAATAACATCTATAAGAAATGCTGGTAGAGCTTCACCGATGTAAATTGAAGTATGAATTTTGTGGGGCAGAGGATTGGGGAAATGATTGCTAATTGTTGGAATCTTGTAATTTTGTGAAAGGAGTTCTTCCCCCTCCGCAACACAACTCAACTTGTACATGTCTCTGCGTTTAACTATGTGGCTGCTCATTTTCCTTTGAAATTTTCTTAATTGACATTGACATCGACATTGGAAGCAGTGGGTTTTTTCTAAATTAAATTGTAAAAACATTGAATGGTCACTTTATGAGGAAACAATGGAGCATGTCTGAATATGGTTGGAGTTGTGGTTCATATGAAGAATGTTGGGGCGTTAACCTTAATTTCCTCTAACTCGATTAATGAAAGTTACAACTTCACTGATGGGAAAAAGTAAAACCCTTTTTGCCTCTCAAAAGGCAATGCCAACCCTATATGTCTGTATTCTGAAGTCTCTTTTCTAGTGTCACCATATCATTGGAGCCTGAACGTACTTGATTTTAGAAAAATCATTTGTGCTAACTATTAGTTGACACTGTTTGGTGCTTAGTATATCATTGGTAATACCTACATTTTAACAGTTAAACTTGGTGGTCTCTTTTGGGGCATCTGATGAAATTGAAATGAAACAGTTAAACTTGGTGGCAGAGATATCCATAGTAGGCTACACGGCTTATAGATCAAGAATTAGAAAAGCTACAGACCTATTTCCCTTTAATTGGTTGCTTGGCTATCACTCTATTTTGTGTACTCAGTTGGTTCATCTAAATAATAGAGAACATGCTATACGCTCGCCTCATAACTTCAGTTTATTTTCTGTATTATTCATTCATGACACCGTTTTGATATTCTTTTAGGAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAGGTATTTAGGATAACATCTCCAACCTTCAAGTATTTGTGTGATAGTGGTAAATTGCTGATTTTGTGGTGTTGTTTTGTCCTCTCTTCCCCTTTCAACAGAACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATGGTGAGATTCGTTTTACTTTAGTATAGTACTGTTTGTTTCTCTATGAACAACTATCTTTCTGTGAAAAATTAGTGGTGCCTTATTTTGTAGAAAGCATCTTTTCCATTTTCCAATATTATCTTTTGCTGTCCCTTGTTATTTTGACTAAAAAGTATTAGTTGGAACTAAACAGATGACTTTATATGAAGTGGAATTTAGATTTTAAGCTAGTTATGTTAATTTCATCAAGTGAATAAGTAAAATAAATATAAACCAGCAACTACTTCATGTGACATAAGGTGAAAATAAATATAATTAGTGATAGGTCCTTGTTCCCTTCGCTTTATGTTTCACTAAAGGACTTGTGCATGTATCAAGTGCTCTCGAACATTGCCTATGCTGACTTTAGAATGAAAAGGTAACGGGTCACTACATTTATCTCCTCCCCCCTCCAAAAAAGAGATCAGTGATCAGCATGAAGATTTTTAGGCAGTGATCATCTCTGTATGTGTCTGTTTCTCAATTTGTAGTTGTATTTCAAATGCTCTTGCATATGCCAGCTGGGTAGTGATAGATCTAGAGGCTGGCTGTTGAGTCTGAGATCCTCTTAGATGCTAGGACCTAGGATCATAGTTTATCAGCTATATAAGTGCATTTGCTCTTCTCTTTACATTCTATATTCTATGGAAAAATGATGCATGATACTCATGAACTTTGTTTGTAAAGAACTCATGAAGTTAGAGTGGTGATTCTATATGGTGTAAGCTGGACTGCTGGACAAAAGATATGCTTAGCCTGTCTGGTTATCTTGGACAAAAGGAAAGGGGAGAACGGAAGATGGCAAAGGGTTAATTATGATTTAACTAGTTAATTAAGTTGTTTATGGAATTACCTGGTTAATCATGATCATATTCTGTGGTGTGCATTTTGCTCTACTGACTGTCTTGTGCTGATCTAGTTTCTTCATTTCCTTTTTGTTTTATTTGATAACATATTCTAATAAGTTGGATGTCTGGAGATTATCAGTGTTGTTGATGAAGTTTGTCAGAAGAAATAGACATTCTTCCGTAGTTTCTACAGTTGACTTACTCATCAGCAGGATTAGATTTTCCCTTATTGTATGTTTTGAGTATTGTAAGGTCAGATCTCTTACCTTTATGTATTAATGGTCTATCTCGTTTGTTTTATGCAGTCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTT</genome_strand>
        <mrna_strand>AAATCTGAACAAAGGGTTTTCGGATCTGTTTCATAATGGCAACAAAGATGTTTCTTTCAAG..........................................................................................................AACTGAGTATGATTGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGATTCAAGTTGAATATGCTATTGAAGCTATCAAG.................................................................................................................TTGGGTTCAACTGCAATTGGATTGAATACTAAGGAACGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACCAACACTTGTGGAACATGCACGGGTTGAAACTCAT..................................................................................................AACCATATATTCTCTTATGGCGAGCCCATGACTGTTGAGTGCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277303" ref_strand="-" ref_description="SGN-E277303 [cLEL-3-J16](-)">
      <seq>gcaccagggatctgtagcaaaatttcatcaaagatgtttcttacaagaacgtgagtatgatagaggtgttaacactctctcgcctgaaggacgattgtttcaagttgaatatgctattgaagctatcaagttgggttcaactgcaattggattgaagactaaggaaggagttgttcttgctgtggagaagcgcattacttcaccacttctggagccaagcagtgtggagaaaattatggaaatcgacgagcatattggctgtgcaatgagtggattgatagctgatgcacgaacacttgtggaacatgcacgggttgaaactcagaaccatagattctcttatggcgagcccatgactgtagagtccactacccaagctctctgtgatttggcgttgcgatttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="10398" stop="12685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10691" g_stop="10737" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10738" i_stop="10843" i_length="106">
            <donor d_prob="0.948" d_score="0.85"/>
            <acceptor a_prob="0.756" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10844" g_stop="10925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="130" r_length="83" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11039" g_stop="11119" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="211" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12092" g_stop="12205" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="325" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12304" g_stop="12385" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="407" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E277303" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277303" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10691" e_stop="10737"/>
          <exon e_start="10844" e_stop="10925"/>
          <exon e_start="11039" e_stop="11119"/>
          <exon e_start="12092" e_stop="12205"/>
          <exon e_start="12304" e_stop="12385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAGGTAAAATTTGCATTTGTTTGGTGCTTAATCTACTTTTTTTTTGTTCAATGAAATCGGAATTGAATGATTTTGTTTTCTTCCTGTATTTTGGAAATTGGGTATGAAGAAC-TGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAGGTAAATTCTTTGATTTTTGCTTCCTGTGTGAATTTTTTTTTGGGGGACTGAAAATAGCTGATGGGTGTTTTTTTTTTTTGGTTTTATGGTTTTGAAATTACGATTTTTTGAAGTTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTGGTTTGTAACACTTGTTTCCGATGTTTTTTTGTTACTTCTGTATGGTTTACTGATTATGTTCATGGGTTATGGTTGGATGGTAAGTTCAATTTTTCAGCAATAACATCTATAAGAAATGCTGGTAGAGCTTCACCGATGTAAATTGAAGTATGAATTTTGTGGGGCAGAGGATTGGGGAAATGATTGCTAATTGTTGGAATCTTGTAATTTTGTGAAAGGAGTTCTTCCCCCTCCGCAACACAACTCAACTTGTACATGTCTCTGCGTTTAACTATGTGGCTGCTCATTTTCCTTTGAAATTTTCTTAATTGACATTGACATCGACATTGGAAGCAGTGGGTTTTTTCTAAATTAAATTGTAAAAACATTGAATGGTCACTTTATGAGGAAACAATGGAGCATGTCTGAATATGGTTGGAGTTGTGGTTCATATGAAGAATGTTGGGGCGTTAACCTTAATTTCCTCTAACTCGATTAATGAAAGTTACAACTTCACTGATGGGAAAAAGTAAAACCCTTTTTGCCTCTCAAAAGGCAATGCCAACCCTATATGTCTGTATTCTGAAGTCTCTTTTCTAGTGTCACCATATCATTGGAGCCTGAACGTACTTGATTTTAGAAAAATCATTTGTGCTAACTATTAGTTGACACTGTTTGGTGCTTAGTATATCATTGGTAATACCTACATTTTAACAGTTAAACTTGGTGGTCTCTTTTGGGGCATCTGATGAAATTGAAATGAAACAGTTAAACTTGGTGGCAGAGATATCCATAGTAGGCTACACGGCTTATAGATCAAGAATTAGAAAAGCTACAGACCTATTTCCCTTTAATTGGTTGCTTGGCTATCACTCTATTTTGTGTACTCAGTTGGTTCATCTAAATAATAGAGAACATGCTATACGCTCGCCTCATAACTTCAGTTTATTTTCTGTATTATTCATTCATGACACCGTTTTGATATTCTTTTAGGAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAGGTATTTAGGATAACATCTCCAACCTTCAAGTATTTGTGTGATAGTGGTAAATTGCTGATTTTGTGGTGTTGTTTTGTCCTCTCTTCCCCTTTCAACAGAACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTG</genome_strand>
        <mrna_strand>GCACCAGGGATCTGTAGCAAAATTTCATCAAAGATGTTTCTTACAAG..........................................................................................................AACGTGAGTATGATAGAGGTGTTAACACTCTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAG.................................................................................................................TTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAG..................................................................................................AACCATAGATTCTCTTATGGCGAGCCCATGACTGTAGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710492" ref_strand="+" ref_description="SGN-E710492 [FA55CD09]">
      <seq>cgtctctcaaagctgtgacgaatcagatcgaagatgtttctcactagaaccgagtatgatagaggtgtcaacactttctcgcccgaaggaaggttgtttcaagttgaatatgctattgaagccattaagttgggttcaacggcaattgggataaagaccaaggaaggagttgttcttgctgttgagaagcgaattacctctccacttctggagccaagcagtgtggagaaaattatggaaattgatgagcatattggatgtgcaatgagtggactgatagctgatgcaaggactctggttgaacatgcacgagttgaaactcagaatcacagattctcttacggcgagcccatgactgttgagtccacaacacaagctctgtgtgatttggccctgcgatttggtgagggtgatgaagagtctatgtccagaccttttggagtatcacttctcattgctggtcatgatgagaatggtcctagcttatactatactgatccttctggcactttctggcaatgcaatgcaaaagccattggttcaggttcagaaggtgctgacagctctcttcaggagcaattcaacaaggaccttaccctcaaggaggctgaaaccatagcgctgtcaattctgaagcaagtgatggaagaaaaggtgactcccaataatgttgatattgcgagggtatcaccaacttatcacctctactccccttctgaggtggaagatgttatcacccgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="10542" stop="16283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10844" g_stop="10925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="129" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11039" g_stop="11119" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="210" r_length="81" r_score="0.889"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12092" g_stop="12205" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="324" r_length="114" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.894" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12304" g_stop="12405" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="426" r_length="102" r_score="0.902"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12406" i_stop="13576" i_length="1171">
            <donor d_prob="0.981" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13577" g_stop="13635" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="485" r_length="59" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13636" i_stop="15000" i_length="1365">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15001" g_stop="15103" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="588" r_length="103" r_score="0.874"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15104" i_stop="15749" i_length="646">
            <donor d_prob="0.990" d_score="0.84"/>
            <acceptor a_prob="0.980" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15750" g_stop="15815" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="654" r_length="66" r_score="0.909"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15816" i_stop="15895" i_length="80">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15896" g_stop="15983" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="742" r_length="88" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E710492" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10844" e_stop="10925"/>
          <exon e_start="11039" e_stop="11119"/>
          <exon e_start="12092" e_stop="12205"/>
          <exon e_start="12304" e_stop="12405"/>
          <exon e_start="13577" e_stop="13635"/>
          <exon e_start="15001" e_stop="15103"/>
          <exon e_start="15750" e_stop="15815"/>
          <exon e_start="15896" e_stop="15983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAGGTAAATTCTTTGATTTTTGCTTCCTGTGTGAATTTTTTTTTGGGGGACTGAAAATAGCTGATGGGTGTTTTTTTTTTTTGGTTTTATGGTTTTGAAATTACGATTTTTTGAAGTTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTGGTTTGTAACACTTGTTTCCGATGTTTTTTTGTTACTTCTGTATGGTTTACTGATTATGTTCATGGGTTATGGTTGGATGGTAAGTTCAATTTTTCAGCAATAACATCTATAAGAAATGCTGGTAGAGCTTCACCGATGTAAATTGAAGTATGAATTTTGTGGGGCAGAGGATTGGGGAAATGATTGCTAATTGTTGGAATCTTGTAATTTTGTGAAAGGAGTTCTTCCCCCTCCGCAACACAACTCAACTTGTACATGTCTCTGCGTTTAACTATGTGGCTGCTCATTTTCCTTTGAAATTTTCTTAATTGACATTGACATCGACATTGGAAGCAGTGGGTTTTTTCTAAATTAAATTGTAAAAACATTGAATGGTCACTTTATGAGGAAACAATGGAGCATGTCTGAATATGGTTGGAGTTGTGGTTCATATGAAGAATGTTGGGGCGTTAACCTTAATTTCCTCTAACTCGATTAATGAAAGTTACAACTTCACTGATGGGAAAAAGTAAAACCCTTTTTGCCTCTCAAAAGGCAATGCCAACCCTATATGTCTGTATTCTGAAGTCTCTTTTCTAGTGTCACCATATCATTGGAGCCTGAACGTACTTGATTTTAGAAAAATCATTTGTGCTAACTATTAGTTGACACTGTTTGGTGCTTAGTATATCATTGGTAATACCTACATTTTAACAGTTAAACTTGGTGGTCTCTTTTGGGGCATCTGATGAAATTGAAATGAAACAGTTAAACTTGGTGGCAGAGATATCCATAGTAGGCTACACGGCTTATAGATCAAGAATTAGAAAAGCTACAGACCTATTTCCCTTTAATTGGTTGCTTGGCTATCACTCTATTTTGTGTACTCAGTTGGTTCATCTAAATAATAGAGAACATGCTATACGCTCGCCTCATAACTTCAGTTTATTTTCTGTATTATTCATTCATGACACCGTTTTGATATTCTTTTAGGAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAGGTATTTAGGATAACATCTCCAACCTTCAAGTATTTGTGTGATAGTGGTAAATTGCTGATTTTGTGGTGTTGTTTTGTCCTCTCTTCCCCTTTCAACAGAACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATGGTGAGATTCGTTTTACTTTAGTATAGTACTGTTTGTTTCTCTATGAACAACTATCTTTCTGTGAAAAATTAGTGGTGCCTTATTTTGTAGAAAGCATCTTTTCCATTTTCCAATATTATCTTTTGCTGTCCCTTGTTATTTTGACTAAAAAGTATTAGTTGGAACTAAACAGATGACTTTATATGAAGTGGAATTTAGATTTTAAGCTAGTTATGTTAATTTCATCAAGTGAATAAGTAAAATAAATATAAACCAGCAACTACTTCATGTGACATAAGGTGAAAATAAATATAATTAGTGATAGGTCCTTGTTCCCTTCGCTTTATGTTTCACTAAAGGACTTGTGCATGTATCAAGTGCTCTCGAACATTGCCTATGCTGACTTTAGAATGAAAAGGTAACGGGTCACTACATTTATCTCCTCCCCCCTCCAAAAAAGAGATCAGTGATCAGCATGAAGATTTTTAGGCAGTGATCATCTCTGTATGTGTCTGTTTCTCAATTTGTAGTTGTATTTCAAATGCTCTTGCATATGCCAGCTGGGTAGTGATAGATCTAGAGGCTGGCTGTTGAGTCTGAGATCCTCTTAGATGCTAGGACCTAGGATCATAGTTTATCAGCTATATAAGTGCATTTGCTCTTCTCTTTACATTCTATATTCTATGGAAAAATGATGCATGATACTCATGAACTTTGTTTGTAAAGAACTCATGAAGTTAGAGTGGTGATTCTATATGGTGTAAGCTGGACTGCTGGACAAAAGATATGCTTAGCCTGTCTGGTTATCTTGGACAAAAGGAAAGGGGAGAACGGAAGATGGCAAAGGGTTAATTATGATTTAACTAGTTAATTAAGTTGTTTATGGAATTACCTGGTTAATCATGATCATATTCTGTGGTGTGCATTTTGCTCTACTGACTGTCTTGTGCTGATCTAGTTTCTTCATTTCCTTTTTGTTTTATTTGATAACATATTCTAATAAGTTGGATGTCTGGAGATTATCAGTGTTGTTGATGAAGTTTGTCAGAAGAAATAGACATTCTTCCGTAGTTTCTACAGTTGACTTACTCATCAGCAGGATTAGATTTTCCCTTATTGTATGTTTTGAGTATTGTAAGGTCAGATCTCTTACCTTTATGTATTAATGGTCTATCTCGTTTGTTTTATGCAGTCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTTGTAAGTCTTTGCACCTCTTCTACGCTAGTATTGGAAACTATGATATTTTCTTTTCAATATTTTCTTCTCTTGGTATTGAATCAAGTCTGATAGAGCTGCCGGAATGTTATCTTTCAGAGAACTTCCTTCTTCTCCCAAATTTCTTTCGAATACTACTTTGACTTTGGCTAAGTTGGACTTATGCATATTGGATCTCGAGAAAACGATGTACAATATTTGACTAGATATTCCACTGCATCTCAGATGCATTAATACTAAATCTCATGGGAAAAAACCTTTACACTTTTTTAGACAACTCCTTTCCACTTATATGACCATGTTTTTTATAAATCTCATCAAATCACTCTAATCTACACAAATCATCTTAATATAGCATGGAACATCACTTCTAAAATTTTTATTCTATTTTTGTTAGATAATGAGCTTTTTTTAATGTAAATGAAAAATTCTATCTCAATTAGTTGAAAAATGCTTTCATATACATTGAATATTAAGCACTTAATATATTACTCCCTCTAGTTCATATTAAGTGAATTGTTGGGGTATGACACACACGTTAAGAAAAATATACAAGGATATAAAATCAAAGACTATTTTCCACTATTACCCTTTTGATTATTCCCAAATTTTTCTCCTAGAAAATGTGAAGTAGTTACGAACCTCATTAAATGAAGGGTAAATATAGAAAAAGTCCTAGCAATTCTCTTGAACTTTGAATACACTTCATTTAATTTGAACTATGAAAAAGGTACCAACAATTCACAACAGTCATTGGTCGTTGCGTATTGGCCTGAGCTCAACAAGGATGATTGTGTATTAGCCTACCTGTCATGGTTGTCACATTTGGTGTCTTATGTATTAGGCACTGGTTCACTTAAACCTACCTCTCCAAAATTACTAAAATGTTGCTCTAATATTATCTCCTAATCCCTTGTTATAGTCTTTTGAGCCAAGGGTCTATAAGGAAGAGCCTCTCTACCCTCCCCCCCCCCCCCACTAAGGTAGGGGTAAGGTCTACATACATACTATCTTCCTAGACCCTACTTGTGGGATTACAGTGGGGTATGTTGCTGCTGTTGTTATTGTTGTTAATGAATATTAAATACTGAAGAGGTCAAGAGATCACATTCCTGGAAATGATTCTACCAACTGGCCATGATCGATTGGGCTTTTGTGTGATGAGCTGCTAAAATCAGACTTTTGTCTATATTCCTAAGAGAATACTGGAAACAGAATTTCATAAGCATACTGTTAACATTACATAGTTTATTCAAGTGTTCGGCCTCTCATTACTTACTAACCTGATTGTGGGTATTAAGCAACATAATTTGTAGATACTGAATGTCGCCCAATTCTGATGTGCAGGTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAGGTATCTAGGTTTTTTTATTTTTCTAGTGAAACCGTGACCCGTAGTCCTAATTACAGTCCAGTCTGCAGCAGGCTGGAGGTAATGTTGCTAGTGGAAGATGTAATAATAGGTCCTGTTCCTTTTTTTATTCACCCTCATTTCAACTGTTTGGATGCTTGAATGCTGGTGAACTTCATGAGTTCCGCATAAAGTATCTTGGTGGAAGCCGAGAAGTAGAGGAGGATTCCCCTCCTTGTATTTTTGCCCTAAATAGCTCAGCTCAAACATGCTGTCCAACCTTATTAGTCCGAGTAGCTAGTTTGGTTGGTGATGCGGTCACCCACTTGTACGTTTTCAAATAAGCATGCTAGCCTTCACACCTCCGAAATTAGATGTTTGTGGAACAAGTATTCAAGAAATCTCGTGTTCTATCTTCGTAACTGTTGTCCAGTCTGCAGCAGCTTGGGGTTGTTTGATGCTTTCCGTTGCCTATTCAACCCCTAAGACCATTCCCCTCTTCTCTTCCTCCAATAGAGGGAATTAAATCAGTCACTTTTCACTCATAACATTAAAATTGTAGGTGACTATTTTTGTAACCGAAAAGCTGGAGTTTAGTTTTCATATGGTTCTTAAAGTTGATCTAAAGTCGATTATCTCCTTTCTGCAGGACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAGGTAAGCAATAAGCCTCATGACACTTGTATTTTCATGATTTCGTTCCTTGTTTCTGAGAAAGCTCCCCCTATTTGATTCAGGTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCC</genome_strand>
        <mrna_strand>AACCGAGTATGATAGAGGTGTCAACACTTTCTCGCCCGAAGGAAGGTTGTTTCAAGTTGAATATGCTATTGAAGCCATTAAG.................................................................................................................TTGGGTTCAACGGCAATTGGGATAAAGACCAAGGAAGGAGTTGTTCTTGCTGTTGAGAAGCGAATTACCTCTCCACTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCAAGCAGTGTGGAGAAAATTATGGAAATTGATGAGCATATTGGATGTGCAATGAGTGGACTGATAGCTGATGCAAGGACTCTGGTTGAACATGCACGAGTTGAAACTCAG..................................................................................................AATCACAGATTCTCTTACGGCGAGCCCATGACTGTTGAGTCCACAACACAAGCTCTGTGTGATTTGGCCCTGCGATTTGGTGAGGGTGATGAAGAGTCTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGACCTTTTGGAGTATCACTTCTCATTGCTGGTCATGATGAGAATGGTCCTAGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTATACTGATCCTTCTGGCACTTTCTGGCAATGCAATGCAAAAGCCATTGGTTCAGGTTCAGAAGGTGCTGACAGCTCTCTTCAGGAGCAATTCAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTACCCTCAAGGAGGCTGAAACCATAGCGCTGTCAATTCTGAAGCAAGTGATGGAAGAAAAG................................................................................GTGACTCCCAATAATGTTGATATTGCGAGGGTATCACCAACTTATCACCTCTACTCCCCTTCTGAGGTGGAAGATGTTATCACCCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277189" ref_strand="-" ref_description="SGN-E277189 [cLEL-3-J16]">
      <seq>gctctttgcaggagcagtattaacaaggaccttacccttaaagaggctgaaaccatagcactgtccattctcaagcaagtgatggaagagaaggtgactcccaataatgttgatattgcgagggtatctccaacttaccatctatactcaccatcggaggtggaagaggttatcagccgcctataagaaagcatgtgatcacgctcgttatgatatttttcttgtatgacaaaaacactttcttgttgctgcagccctggagcctggaggtcattggattgttttttccttcttccaaggctaggaattgattcagacaagtgttttctgtatgttcattacattatttgaaaaaacgctctaagtccatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="14778" stop="16452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15078" g_stop="15103" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15104" i_stop="15749" i_length="646">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15750" g_stop="15815" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="93" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15816" i_stop="15895" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15896" g_stop="16174" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="372" r_length="279" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="389"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E277189" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277189" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15078" e_stop="15103"/>
          <exon e_start="15750" e_stop="15815"/>
          <exon e_start="15896" e_stop="16174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTGCAGGAGCAGTA-TAACAAGGTATCTAGGTTTTTTTATTTTTCTAGTGAAACCGTGACCCGTAGTCCTAATTACAGTCCAGTCTGCAGCAGGCTGGAGGTAATGTTGCTAGTGGAAGATGTAATAATAGGTCCTGTTCCTTTTTTTATTCACCCTCATTTCAACTGTTTGGATGCTTGAATGCTGGTGAACTTCATGAGTTCCGCATAAAGTATCTTGGTGGAAGCCGAGAAGTAGAGGAGGATTCCCCTCCTTGTATTTTTGCCCTAAATAGCTCAGCTCAAACATGCTGTCCAACCTTATTAGTCCGAGTAGCTAGTTTGGTTGGTGATGCGGTCACCCACTTGTACGTTTTCAAATAAGCATGCTAGCCTTCACACCTCCGAAATTAGATGTTTGTGGAACAAGTATTCAAGAAATCTCGTGTTCTATCTTCGTAACTGTTGTCCAGTCTGCAGCAGCTTGGGGTTGTTTGATGCTTTCCGTTGCCTATTCAACCCCTAAGACCATTCCCCTCTTCTCTTCCTCCAATAGAGGGAATTAAATCAGTCACTTTTCACTCATAACATTAAAATTGTAGGTGACTATTTTTGTAACCGAAAAGCTGGAGTTTAGTTTTCATATGGTTCTTAAAGTTGATCTAAAGTCGATTATCTCCTTTCTGCAGGACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAGGTAAGCAATAAGCCTCATGACACTTGTATTTTCATGATTTCGTTCCTTGTTTCTGAGAAAGCTCCCCCTATTTGATTCAGGTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGCTTCAAGGATTTAAGTCCATCT</genome_strand>
        <mrna_strand>GCTCTTTGCAGGAGCAGTATTAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAG................................................................................GTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGAAAAAACGCTCTAAGTCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300775" ref_strand="+" ref_description="SGN-E300775 [cLEW-8-G17]">
      <seq>tcactctttcatcgatggtcacctgcggattccggcgacacccagtttaatattcatctggttctgtacaataatacactcctatatacgcgcacgcgccgctgtactatagtaggcaatacacacgcgtttacggctgctgtaaggcagagccaaattgagaatctgaagttgctgctcttttgctttgtatcgagaatcagacgatgtcgaaatcattgccctattcaatgaaagatgtgcactacgataacgccaagttcagacagcgatccgtatctcaggtaatttctcaggttctattaaccagtcatgggaaacgagattatttgaaatgtagcactgggaaacttctcgtgttactgatgcttgggggtttagcatatctagtactgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="25406" stop="30157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25706" g_stop="25989" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25990" i_stop="29743" i_length="3754">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29744" g_stop="29857" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="398" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E300775" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25706" e_stop="25989"/>
          <exon e_start="29744" e_stop="29857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTCCATCGATGGTCACCTCCGGATTCCGGCGACACCCAGTTTAATATTCATCTGGTTCTGTACAATAATACACTCCTATATACGTGCACGCGCCGCTGTACTATAGTAGGCAATACACACGCGTTTACGGCTGCTGTAAGGCAGAGCCAAATTGAGAATCTGAAGTTGTTGCTCTTTTGTTTTGTATCGAGAATCAGACGATGTCGAAATCATTGCCCTATTCAATGAAAGATGTGCACTACGATAACGCCAAGTTCAGACAGCGATCCGTATCTCAGGTCAGCTAGCTCAATCAGAATTCGTTCCTTTGAATCTTGTTTTTAATTTTTTTTGAATTTCGATCTCTGAACAGAGTAAGGATTAGTTTAGAAGTGCGCTGATTTGTTTTCTTCATAGAACAGCTTGGAAATAACCTGATTTGTCTATTTGCGTAGTTTGAGAGGAGGAAAAGGAGGCTTTTTGGTTATGAAATGTCGTTTTGCTAACTGAAAGATATGATCAGATAACTTTTTTTTTTTTTGTATTTTTTCTCTGATGTGAACTGAAGTATGCCCTGGTGAAAGTGTGGCTAAAATGGGAAATAATGTTCACAAGCCACTCAATTTGAGAAAGTAAGAGCCAGTTCGGAATACGAGAAATAAAAAAATATATGCAAGTCAAACATGGTTGTTCTTAAACTTGATTTGGTATATAGCTAGCATTGAGAGCTCCGTGACTGGTCAACCAATGATTGATAGGCCATTGATTTGAATATTAGATTGTCTAATTTTTGAAGGAGTCTCAAGTAAGCTGTTGAGCTAAGTAGTATACTATATTTTTATATTAATGTACCACTTTCCTTTTTGAGCTGAGTTCTCTTTTAAAGCCTTTTAACCATCGGCACTCTCATTCTGAAAGTTTTCGTTATGCCCCTCTTTTTGTGGTTTTGGCGGTGGGGTTCGGGGGGAGGATTTTAATATTTGGACTTGGTATGCAGTTTGTTACATGAAAGGGTGCTGCAACAGTGTTGTACTTACACGAAACCACCTTTTTCGATATAATTAACAAGTTTTATGTTGTGCATCTTAGTATCCGGACACCTTTAAAAGCGTTATTATCGTCTCAGCCTGTAAAGGCTACATAAGAAAAAGAGATAGCCAACTTTGGTTGAAGGTGGTGATAACTAAATTTTAGTTTCTATTTCAATTATAAGATTTGGACCCCATTGCCATGGGATAAATATAAGATATTACTGCTAACATATTTGAGAGAACTAAATTAAAAACCAATTAGAGTAGCTATGGATAAGACCATTGTTGTCTCTTACTAAACATTCCTTTCTTCTCAACCCCAAAGGTTAATCGGCGAATCTCTACCCTAAGGAGACATGATTCCTTTTGGTTATTGGTGGAAAGCTGGAGTTTGGCTAATGATTAGTGTATCATTTAATTCTTGTGCTTATTGATGGTGAACTCGATCAATTTTAAGACCTTGATCAGACCTGGACGAATTTGTGATTTGATTGTAAAACTCTGATATTCAGGAAACATATGCACAATACTAAAAAGAATTATAAAAGTCCAAAAAAATTACATCAAGAGAAGGTACTTCTGTTGGACTCTTGGTAAAGGATATGTGAAACCATTATTCAAAAGAAGCTTTACCTTTTCATAAAAAAACAATTGTACAAAAGAGGGAATGTGATATCAATATGCAGAATTTTCCTGGGAAGGGATCTTAATGTTCTATTCAGCTATCAGTCTTTTTCTAAATACTTCTCCGTGCGTCTTCTCTATTTTAATATGTATTCTCCATATTCTTTAGATGTTTATTGGATGAATGTACAAAAGAGGGAATGTGATATCAATATGCAGAATTTTCCTGGGAAGGGATCTTAATGTTCTATTCAGCTATCAGTCTTTTTCTAAATACTTCTCCGTGCGTCTTCTCTATTTTAATATGTATTCTCCATATTCTTTAGATGTTTATTGGATGAATTTGTTACACTCACTACCCTTGGCAGTGTTCATGTAATAGCCTAGTTCACTGATAGGTTTGGTTATATATTCATTAATCATCTACTTTGCTCCTTATAATAACCTTGAGTAACGGAATTGAGTTTTAAAGAGTTGTCCAGTTTAATTTCCTTCAGAGCTTAGTTGATAATCTAAGACATGATCAAAAGAAAGGAGGAAGTTGGAAATCTCGACTGGAAAGAGTGGTAATTGCTCACAGCTTTGCGTAGCGATTTGCTTACAACAGCATTAACCCCTTTAATATGGTCTGATTTGACTGTTCTAAAGAGTGTGAAAAAGTATTTCATTCACATATTGAGTTGTTCCTTTCTAATTAAGTCTGTTGCCATATATCTGAAGTTCATGATTCATGCCACGTAATAAGCGTCACTAATAAAGACGAAATAGGAAAAATATAAAAAATAATAATAAAATAACATAAAATTGTGATATAAAAAGTGTCATTTTGCCATTCATATTTGAATCTCAAATAAATTGGAGTTCTGAAGATTAACTTAAGGAATCAATATGATGGCAGACAGTTAAATATTCTTGAATATTTCAAATGGAAATTGCACCTCATAAGTTAGAAAGAGAGCAGTTTTCCATTTTCTCTCATATTATTGTCAATTCTGGCATATCTTATATCATGAATTCGAGTAGCTTGGATTTTTTCATAGAAATACGGAGTGCTTTGATGTAGTCTAAATAGTATATTTGGTGCCTTACAAAAGTTTTCTTTTCTTCTTGGTATGGGTAGTGTTGAGAATATCATTAACTAATAAAAGTGTGTTCTCTCTAATTTTAGAGAGAACACACTTTTATTAGTTCATGATACTCTCAACACACTCCTCACATGCGGACCTAATTTTTTTTCCATGGGTCAAACGTGTGAAAATTCTTTTTTAATTTGGGTGTGGAAGAATCCTTATAAAGATTTGGTAATTCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAACTAAGCCTAATTTAACATGGTATGAGGGCCCCCAAAATCAAAATTGTTAATGCACCAAATGCGAAGCACTGGGCATGAAGTTGGGTGTTAAAGAATGACAAAAGTTCCACATTGGTGGTTAACAAGATGGGTGGACTCCTAATAAGGCTTGGGCAATCCTCTTCCATTTGAGTTAGCTTTTGAGGTGTGAGTTAGGACCAAGGCCTAACTTAACGGGCAGCAACCTTTATATAGTGTACTTATGGTGCATCGTTCCAGAGACTACTGAAGTCATACATCTCGTAAGGAGATTGACGGAGCAGTATAGGGAGTGGAAGAGGGAACATATGATGTTTGTTGACCTAGAAAAAGCTTTCGACAAAGTGGGTATTTGGATTGACTTATTTTAAGTAGCTTTCGACTTTTAAACTCTTTTTGTTTGTTTTGGAAGTGTTCGAAAAACACAAAAAGTGCTTTTAAGCATTTTTTTTTGGCTGAAAAAGAACAAAAAGAAGAGTCAAAAGCCAAAAAATGGGTGTTCCCAACTTATTGCTTTTAGCTTTTAACTTATATGCCACTTTAAAAAAGTCAATTCGAACATCCCCCAAGTCCCTTGGAGGGTTCTATGGAGTCGTTTGAAAGCTAGACGTGTACTTGCAGCTTACATTAGGGCGATTAAGGACAGATTCAATGGATCCAAGACCCGAGTGAGGACAGTGGGCTGAGACTCGGAGCACGTCAGTATTTGCCCACAATGTAGTGACCCTGACTTGTGACATTAATGACTTCAGGAACCAAATTATGTTGAATTTGCTATTTTACCTTTACTTAAATAATTTGTTTTTGTAGCACCTAAATGGCCATATATGGTGGGTTTTGCCTATAGCTTGCATATTAGAAGTGTGCTTTATCTCTGACTATCTTCCCTAGCACCAGTAATGCACATATAAATTCTTGCTTTTAAAATTGAGATAGCTTCCAGATCATTTTCATTCCTTGAAAGGTCTTAGTATTTCTGCAGCAGAATTTTGTAGTTTCTCTTGTATGCTGAAATTTTATAGTTCTGCTTATCTTTTCAGGTAATTTCTCAGGTTCTATTAACCAGTAATGGGAAACGAGATTATTTGAAATGTAGCACTGGGAAACTTCTCGTGTTACTGATGCTTGGTGGTTTAGCATATCTAGTACTGACT</genome_strand>
        <mrna_strand>TCACTCTTTCATCGATGGTCACCTGCGGATTCCGGCGACACCCAGTTTAATATTCATCTGGTTCTGTACAATAATACACTCCTATATACGCGCACGCGCCGCTGTACTATAGTAGGCAATACACACGCGTTTACGGCTGCTGTAAGGCAGAGCCAAATTGAGAATCTGAAGTTGCTGCTCTTTTGCTTTGTATCGAGAATCAGACGATGTCGAAATCATTGCCCTATTCAATGAAAGATGTGCACTACGATAACGCCAAGTTCAGACAGCGATCCGTATCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTCAGGTTCTATTAACCAGTCATGGGAAACGAGATTATTTGAAATGTAGCACTGGGAAACTTCTCGTGTTACTGATGCTTGGGGGTTTAGCATATCTAGTACTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367796" ref_strand="+" ref_description="SGN-E367796 [cLPT-14-H24]">
      <seq>cggattccggcgacacccagttggatatccatctgggtctgtgtaataatatactcctatatacgcgcacgcgccactgtactatagtaggaaatatacacgcgtttacggctgctataaggcagagccaaattgagaatctgaagttgttgctcttttgttttgtatcgagaaacagacgatgtcgaaatcattgccctattcaacgaaagatgtgcactacgataacgccaagttccgacagcgatccgtatctcaggtaatttctcaggttctattaaccagtaatgggaaacgagattatttgaaatgtagcactgggaaacttctcgtgttactgatgcttggtggagtagcatatctagtactgactaataaaagtgctgtcaatcccgtgtctgatggtatagcaaaaaatgatggatcagaggaaggagaaaatctcatgactcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="25431" stop="30240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25731" g_stop="25989" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25990" i_stop="29743" i_length="3754">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29744" g_stop="29940" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="456" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E367796" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25731" e_stop="25989"/>
          <exon e_start="29744" e_stop="29940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTCCGGCGACACCCAGTTTAATATTCATCTGGTTCTGTACAATAATACACTCCTATATACGTGCACGCGCCGCTGTACTATAGTAGGCAATACACACGCGTTTACGGCTGCTGTAAGGCAGAGCCAAATTGAGAATCTGAAGTTGTTGCTCTTTTGTTTTGTATCGAGAATCAGACGATGTCGAAATCATTGCCCTATTCAATGAAAGATGTGCACTACGATAACGCCAAGTTCAGACAGCGATCCGTATCTCAGGTCAGCTAGCTCAATCAGAATTCGTTCCTTTGAATCTTGTTTTTAATTTTTTTTGAATTTCGATCTCTGAACAGAGTAAGGATTAGTTTAGAAGTGCGCTGATTTGTTTTCTTCATAGAACAGCTTGGAAATAACCTGATTTGTCTATTTGCGTAGTTTGAGAGGAGGAAAAGGAGGCTTTTTGGTTATGAAATGTCGTTTTGCTAACTGAAAGATATGATCAGATAACTTTTTTTTTTTTTGTATTTTTTCTCTGATGTGAACTGAAGTATGCCCTGGTGAAAGTGTGGCTAAAATGGGAAATAATGTTCACAAGCCACTCAATTTGAGAAAGTAAGAGCCAGTTCGGAATACGAGAAATAAAAAAATATATGCAAGTCAAACATGGTTGTTCTTAAACTTGATTTGGTATATAGCTAGCATTGAGAGCTCCGTGACTGGTCAACCAATGATTGATAGGCCATTGATTTGAATATTAGATTGTCTAATTTTTGAAGGAGTCTCAAGTAAGCTGTTGAGCTAAGTAGTATACTATATTTTTATATTAATGTACCACTTTCCTTTTTGAGCTGAGTTCTCTTTTAAAGCCTTTTAACCATCGGCACTCTCATTCTGAAAGTTTTCGTTATGCCCCTCTTTTTGTGGTTTTGGCGGTGGGGTTCGGGGGGAGGATTTTAATATTTGGACTTGGTATGCAGTTTGTTACATGAAAGGGTGCTGCAACAGTGTTGTACTTACACGAAACCACCTTTTTCGATATAATTAACAAGTTTTATGTTGTGCATCTTAGTATCCGGACACCTTTAAAAGCGTTATTATCGTCTCAGCCTGTAAAGGCTACATAAGAAAAAGAGATAGCCAACTTTGGTTGAAGGTGGTGATAACTAAATTTTAGTTTCTATTTCAATTATAAGATTTGGACCCCATTGCCATGGGATAAATATAAGATATTACTGCTAACATATTTGAGAGAACTAAATTAAAAACCAATTAGAGTAGCTATGGATAAGACCATTGTTGTCTCTTACTAAACATTCCTTTCTTCTCAACCCCAAAGGTTAATCGGCGAATCTCTACCCTAAGGAGACATGATTCCTTTTGGTTATTGGTGGAAAGCTGGAGTTTGGCTAATGATTAGTGTATCATTTAATTCTTGTGCTTATTGATGGTGAACTCGATCAATTTTAAGACCTTGATCAGACCTGGACGAATTTGTGATTTGATTGTAAAACTCTGATATTCAGGAAACATATGCACAATACTAAAAAGAATTATAAAAGTCCAAAAAAATTACATCAAGAGAAGGTACTTCTGTTGGACTCTTGGTAAAGGATATGTGAAACCATTATTCAAAAGAAGCTTTACCTTTTCATAAAAAAACAATTGTACAAAAGAGGGAATGTGATATCAATATGCAGAATTTTCCTGGGAAGGGATCTTAATGTTCTATTCAGCTATCAGTCTTTTTCTAAATACTTCTCCGTGCGTCTTCTCTATTTTAATATGTATTCTCCATATTCTTTAGATGTTTATTGGATGAATGTACAAAAGAGGGAATGTGATATCAATATGCAGAATTTTCCTGGGAAGGGATCTTAATGTTCTATTCAGCTATCAGTCTTTTTCTAAATACTTCTCCGTGCGTCTTCTCTATTTTAATATGTATTCTCCATATTCTTTAGATGTTTATTGGATGAATTTGTTACACTCACTACCCTTGGCAGTGTTCATGTAATAGCCTAGTTCACTGATAGGTTTGGTTATATATTCATTAATCATCTACTTTGCTCCTTATAATAACCTTGAGTAACGGAATTGAGTTTTAAAGAGTTGTCCAGTTTAATTTCCTTCAGAGCTTAGTTGATAATCTAAGACATGATCAAAAGAAAGGAGGAAGTTGGAAATCTCGACTGGAAAGAGTGGTAATTGCTCACAGCTTTGCGTAGCGATTTGCTTACAACAGCATTAACCCCTTTAATATGGTCTGATTTGACTGTTCTAAAGAGTGTGAAAAAGTATTTCATTCACATATTGAGTTGTTCCTTTCTAATTAAGTCTGTTGCCATATATCTGAAGTTCATGATTCATGCCACGTAATAAGCGTCACTAATAAAGACGAAATAGGAAAAATATAAAAAATAATAATAAAATAACATAAAATTGTGATATAAAAAGTGTCATTTTGCCATTCATATTTGAATCTCAAATAAATTGGAGTTCTGAAGATTAACTTAAGGAATCAATATGATGGCAGACAGTTAAATATTCTTGAATATTTCAAATGGAAATTGCACCTCATAAGTTAGAAAGAGAGCAGTTTTCCATTTTCTCTCATATTATTGTCAATTCTGGCATATCTTATATCATGAATTCGAGTAGCTTGGATTTTTTCATAGAAATACGGAGTGCTTTGATGTAGTCTAAATAGTATATTTGGTGCCTTACAAAAGTTTTCTTTTCTTCTTGGTATGGGTAGTGTTGAGAATATCATTAACTAATAAAAGTGTGTTCTCTCTAATTTTAGAGAGAACACACTTTTATTAGTTCATGATACTCTCAACACACTCCTCACATGCGGACCTAATTTTTTTTCCATGGGTCAAACGTGTGAAAATTCTTTTTTAATTTGGGTGTGGAAGAATCCTTATAAAGATTTGGTAATTCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAACTAAGCCTAATTTAACATGGTATGAGGGCCCCCAAAATCAAAATTGTTAATGCACCAAATGCGAAGCACTGGGCATGAAGTTGGGTGTTAAAGAATGACAAAAGTTCCACATTGGTGGTTAACAAGATGGGTGGACTCCTAATAAGGCTTGGGCAATCCTCTTCCATTTGAGTTAGCTTTTGAGGTGTGAGTTAGGACCAAGGCCTAACTTAACGGGCAGCAACCTTTATATAGTGTACTTATGGTGCATCGTTCCAGAGACTACTGAAGTCATACATCTCGTAAGGAGATTGACGGAGCAGTATAGGGAGTGGAAGAGGGAACATATGATGTTTGTTGACCTAGAAAAAGCTTTCGACAAAGTGGGTATTTGGATTGACTTATTTTAAGTAGCTTTCGACTTTTAAACTCTTTTTGTTTGTTTTGGAAGTGTTCGAAAAACACAAAAAGTGCTTTTAAGCATTTTTTTTTGGCTGAAAAAGAACAAAAAGAAGAGTCAAAAGCCAAAAAATGGGTGTTCCCAACTTATTGCTTTTAGCTTTTAACTTATATGCCACTTTAAAAAAGTCAATTCGAACATCCCCCAAGTCCCTTGGAGGGTTCTATGGAGTCGTTTGAAAGCTAGACGTGTACTTGCAGCTTACATTAGGGCGATTAAGGACAGATTCAATGGATCCAAGACCCGAGTGAGGACAGTGGGCTGAGACTCGGAGCACGTCAGTATTTGCCCACAATGTAGTGACCCTGACTTGTGACATTAATGACTTCAGGAACCAAATTATGTTGAATTTGCTATTTTACCTTTACTTAAATAATTTGTTTTTGTAGCACCTAAATGGCCATATATGGTGGGTTTTGCCTATAGCTTGCATATTAGAAGTGTGCTTTATCTCTGACTATCTTCCCTAGCACCAGTAATGCACATATAAATTCTTGCTTTTAAAATTGAGATAGCTTCCAGATCATTTTCATTCCTTGAAAGGTCTTAGTATTTCTGCAGCAGAATTTTGTAGTTTCTCTTGTATGCTGAAATTTTATAGTTCTGCTTATCTTTTCAGGTAATTTCTCAGGTTCTATTAACCAGTAATGGGAAACGAGATTATTTGAAATGTAGCACTGGGAAACTTCTCGTGTTACTGATGCTTGGTGGTTTAGCATATCTAGTACTGACTAATAAAAGTGCTGTCCATCCCGTGTCTGATGGTATAGCAAAAAATGATGGATCAAAGGAAGGAGAAAATCTCATGACTCATGG</genome_strand>
        <mrna_strand>CGGATTCCGGCGACACCCAGTTGGATATCCATCTGGGTCTGTGTAATAATATACTCCTATATACGCGCACGCGCCACTGTACTATAGTAGGAAATATACACGCGTTTACGGCTGCTATAAGGCAGAGCCAAATTGAGAATCTGAAGTTGTTGCTCTTTTGTTTTGTATCGAGAAACAGACGATGTCGAAATCATTGCCCTATTCAACGAAAGATGTGCACTACGATAACGCCAAGTTCCGACAGCGATCCGTATCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCTCAGGTTCTATTAACCAGTAATGGGAAACGAGATTATTTGAAATGTAGCACTGGGAAACTTCTCGTGTTACTGATGCTTGGTGGAGTAGCATATCTAGTACTGACTAATAAAAGTGCTGTCAATCCCGTGTCTGATGGTATAGCAAAAAATGATGGATCAGAGGAAGGAGAAAATCTCATGACTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709938" ref_strand="+" ref_description="SGN-E709938 [FA53CG11]">
      <seq>cgttagtatcttatcaaagtgtggcttcagcagaaaggaactaacttttcatacttgtacgatatgtatgtcgaagcaattaaaggtgtcaggcaccttcttgttcgcaaatctgttccaaatggcttggtctttgtgggagaattgccatatgggcaagaaggtggtttcagtccaaagatggatcacctggtgtgtttccttcctggtaccctagcccttggtgctacaaaggggttgacaaaggaaagagctatgagagagaacttgctcacttttgaagatatggaaaacctaaagcttgctgaagatctggctaagacttgcgtggaaatatactcagtaacctctactggccttgctccagaaatagcttatttcaatattgagggaaattctgaaggtggtcctggtggtgggaacaaaagttcgaaatatttgaatgacataatcataaagcctgctgatcgtcacaatcttttgcgccctgaaactgttgaatcattgttttatctgtatcgcattactggcgattcaaagtatcgtgaatggggctggcaaatttttgaggcatttgagaagtacactaagattgattctggaggttacacttctcttgacgatgttactgttattcctccacaaagaagagacaagatggagacttttttcttgggtgaaacactcaaatacatctatttgctgttcggtaatagcaccacgatccctttggatgagtatgtattcaacacagaagctcatcctattccaataatttctagaagtgtatgattgatactttgcttgcaagaagaaatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="31722" stop="34572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32020" g_stop="32211" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32212" i_stop="32791" i_length="580">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32792" g_stop="32989" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="390" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32990" i_stop="33756" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33757" g_stop="33905" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="539" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33906" i_stop="33988" i_length="83">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33989" g_stop="34272" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="823" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E709938" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32020" e_stop="32211"/>
          <exon e_start="32792" e_stop="32989"/>
          <exon e_start="33757" e_stop="33905"/>
          <exon e_start="33989" e_stop="34272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGTATCTTATCAAAGTGTGGCTTCAGCAGAAAGGAACTAACTTTTCATACTTGTACGATATGTATGTCGAAGCAATTAAAGGTGTCAGGCACCTTCTTGTTCGCAAATCTGTTCCAAATGGCTTGGTCTTTGTGGGAGAATTGCCATATGGGCAAGAAGGTGGTTTCAGTCCAAAGATGGATCACCTGGTATGCCATTTCTCTTATTATTCTTTTTCAAATATACTTCAGCATTGTAAAGTGAAAAGGTCAAAATGGGACTAACAGGGAATCAGCTGCACGATGCCACAGTTAGCCGCAGAATTCTATTTTTTCCTTTTGAAAAATAATTAATCTTCTTAAGCAACATGGAAATCCTTTCCTTGATATGTTAAGCCAATTCTCTATTATAAATTTCTTATGCTGATAGAACGTTTTTTTCTTTTCTTTTTCTCCAAATTCTTCATTCATTTTGCTCGCTCAAAGAGTTCACTAACATACTAAAATCACTGGCCGTAACTTTGATTTTCTTCTTCTGAGTGCATTGATTTATGATGGATTACAAGTTGCAGATATCATATAGCTTTACCTCACTAGCTAGGGTATACATTTCAGTAATGTGCTTTTTATTGAAGTATATAATCTCGAATCTTAATTAAAGAAATTAATCTTCTCCTGCCTCTTTCTTTTCTATTCACAATGAGACTTGTTTTCCTAAATGTATGAAAGCCGTATCTTAAATGTTGATGTCTGTTCTTATAAGTTTGATATCATTTGACATCATCCGCAGGTGTGTTTCCTTCCTGGTACCCTAGCCCTTGGTGCTACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAGGTGAGTTGAAACATTTTTATTTCCTTCATCACTTTTGGCAACTATCATATTATGTAAGGTGGTGTTTTCAGTTTTCCTTTATCGGTCTTTTTTCTTTTCTTTTTTGAGGAAGGTGAGTTTTTGAAAGTTAAAAGAATTCTGTTGCATATCTTAAACTTCTGATCTGTGTTTTAACTCTTTTATGTCTAGATGTAACACGGATTAATCAGTTGTAAAAGATGTAAGAATTAGGGCCCTTGTGCATTGGCTTAATAAAAGTAGCTTCTAAGAGGGTGTTTGGATTGACTTAAAAGTTGGCCAAACCTACTTTTATGTCGGTTTTTTACTTTTGGAAGTATTTGACAAATATAAAAAATAATTTAAGATAAGTCAAAATTGAGTTAAATAAGTTGGGAAGGGTTTGACAGACTTAAAATAAGTTAAAAACCAAAAGTACGTTTTACCCTACTTTTTATTTTTTGACTTAAAAGTCATTCAGGTTGACTTTTTATTTTTGACGTATCAGCTACTTTTATTAAGCCAATCCAAAGGGGCTCTAAGTCAAAAATAAAAAGTCAAACTGAAATGAATCAAACCAATCTGGAAAACAATCAGAGTGAAAATGTGCCTATCTTGACTTGAACAATCTAATATCATCATTAGTGAGATGCAATATAAATTAATGATAGTGTTCATATGTCTACCCTGACTTGAAGTACTATTATGACATAATTGGAAAAATTCTTGCATCATAAATGTTTTTCTGGTATCTTGTTTTCTTCGAGCAGGGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAAGTATGTTCTTATTTTAAAGTTGTGTACTTTTGCTTTATGGGCTTGAACAACTAAGTTTGTTAACTTTGTGGACTCTTCTTCAGGTATCGTGAATGGGGCTGGCAAATTTTTGAGGCATTTGAGAAGTACACTAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTT</genome_strand>
        <mrna_strand>CGTTAGTATCTTATCAAAGTGTGGCTTCAGCAGAAAGGAACTAACTTTTCATACTTGTACGATATGTATGTCGAAGCAATTAAAGGTGTCAGGCACCTTCTTGTTCGCAAATCTGTTCCAAATGGCTTGGTCTTTGTGGGAGAATTGCCATATGGGCAAGAAGGTGGTTTCAGTCCAAAGATGGATCACCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTCCTTCCTGGTACCCTAGCCCTTGGTGCTACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAA...................................................................................GTATCGTGAATGGGGCTGGCAAATTTTTGAGGCATTTGAGAAGTACACTAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710071" ref_strand="+" ref_description="SGN-E710071 [FA54AE04]">
      <seq>caaatggcttggtctttgtgggagaattgccatatgggcaagaaggtggtttcagtccaaagatggatcacctggtgtgtttccttcctggtaccctagcccttggtgctacaaaggggttgacaaaggaaagagctatgagagagaacttgctcacttttgaagatatggaaaacctaaagcttgctgaagatctggctaagacttgcgtggaaatatactcagtaacctctactggccttgctccagaaatagcttatttcaatattgagggaaattctgaaggtggtcctggtggtgggaacaaaagttcgaaatatttgaatgacataatcataaagcctgctgatcgtcacaatcttttgcgccctgaaactgttgaatcattgttttatctgtatcgcattactggcgattcaaagtatcgtgaatggggctggcaaatttttgaggcatttgagaagtacactaagattgattctggaggttacacttctcttgacgatgttactgttattcctccacaaagaagagacaagatggagacttttttcttgggtgaaacactcaaatacatctatttgctgttcggtaatagcaccacgatccctttggatgagtatgtattcaacacagaagctcatcctattccaataatttctacaagtgtatgattgatactttgcttgcaagaagaaatattttttccagtattagcggagatccagatgaccccaagagaacatgtttcagcaatctcagatggcattttaattcctttaagtcggttcattaggttggaaatgacctcctggaagcttattcacaaatgttccctttaaatgaagctccctgaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="31838" stop="34727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32138" g_stop="32211" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32212" i_stop="32791" i_length="580">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32792" g_stop="32989" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="272" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32990" i_stop="33756" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33757" g_stop="33905" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="421" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33906" i_stop="33988" i_length="83">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33989" g_stop="34427" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="861" r_length="440" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E710071" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32138" e_stop="32211"/>
          <exon e_start="32792" e_stop="32989"/>
          <exon e_start="33757" e_stop="33905"/>
          <exon e_start="33989" e_stop="34427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCTTGGTCTTTGTGGGAGAATTGCCATATGGGCAAGAAGGTGGTTTCAGTCCAAAGATGGATCACCTGGTATGCCATTTCTCTTATTATTCTTTTTCAAATATACTTCAGCATTGTAAAGTGAAAAGGTCAAAATGGGACTAACAGGGAATCAGCTGCACGATGCCACAGTTAGCCGCAGAATTCTATTTTTTCCTTTTGAAAAATAATTAATCTTCTTAAGCAACATGGAAATCCTTTCCTTGATATGTTAAGCCAATTCTCTATTATAAATTTCTTATGCTGATAGAACGTTTTTTTCTTTTCTTTTTCTCCAAATTCTTCATTCATTTTGCTCGCTCAAAGAGTTCACTAACATACTAAAATCACTGGCCGTAACTTTGATTTTCTTCTTCTGAGTGCATTGATTTATGATGGATTACAAGTTGCAGATATCATATAGCTTTACCTCACTAGCTAGGGTATACATTTCAGTAATGTGCTTTTTATTGAAGTATATAATCTCGAATCTTAATTAAAGAAATTAATCTTCTCCTGCCTCTTTCTTTTCTATTCACAATGAGACTTGTTTTCCTAAATGTATGAAAGCCGTATCTTAAATGTTGATGTCTGTTCTTATAAGTTTGATATCATTTGACATCATCCGCAGGTGTGTTTCCTTCCTGGTACCCTAGCCCTTGGTGCTACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAGGTGAGTTGAAACATTTTTATTTCCTTCATCACTTTTGGCAACTATCATATTATGTAAGGTGGTGTTTTCAGTTTTCCTTTATCGGTCTTTTTTCTTTTCTTTTTTGAGGAAGGTGAGTTTTTGAAAGTTAAAAGAATTCTGTTGCATATCTTAAACTTCTGATCTGTGTTTTAACTCTTTTATGTCTAGATGTAACACGGATTAATCAGTTGTAAAAGATGTAAGAATTAGGGCCCTTGTGCATTGGCTTAATAAAAGTAGCTTCTAAGAGGGTGTTTGGATTGACTTAAAAGTTGGCCAAACCTACTTTTATGTCGGTTTTTTACTTTTGGAAGTATTTGACAAATATAAAAAATAATTTAAGATAAGTCAAAATTGAGTTAAATAAGTTGGGAAGGGTTTGACAGACTTAAAATAAGTTAAAAACCAAAAGTACGTTTTACCCTACTTTTTATTTTTTGACTTAAAAGTCATTCAGGTTGACTTTTTATTTTTGACGTATCAGCTACTTTTATTAAGCCAATCCAAAGGGGCTCTAAGTCAAAAATAAAAAGTCAAACTGAAATGAATCAAACCAATCTGGAAAACAATCAGAGTGAAAATGTGCCTATCTTGACTTGAACAATCTAATATCATCATTAGTGAGATGCAATATAAATTAATGATAGTGTTCATATGTCTACCCTGACTTGAAGTACTATTATGACATAATTGGAAAAATTCTTGCATCATAAATGTTTTTCTGGTATCTTGTTTTCTTCGAGCAGGGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAAGTATGTTCTTATTTTAAAGTTGTGTACTTTTGCTTTATGGGCTTGAACAACTAAGTTTGTTAACTTTGTGGACTCTTCTTCAGGTATCGTGAATGGGGCTGGCAAATTTTTGAGGCATTTGAGAAGTACACTAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGA-CCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTT</genome_strand>
        <mrna_strand>CAAATGGCTTGGTCTTTGTGGGAGAATTGCCATATGGGCAAGAAGGTGGTTTCAGTCCAAAGATGGATCACCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTCCTTCCTGGTACCCTAGCCCTTGGTGCTACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAA...................................................................................GTATCGTGAATGGGGCTGGCAAATTTTTGAGGCATTTGAGAAGTACACTAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTACAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATCCAGATGACCCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCCTTTAAGTCGGTTCATTAGGTTGGAAATGACCTCCTGGAAGCTTATTCACAAATGTTCCCTTTAAATGAAGCTCCCTGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337966" ref_strand="+" ref_description="SGN-E337966 [cTOE-14-G9]">
      <seq>tacaaaggggttgacaaaggaaagagctatgagagagaacttgctcacttttgaagatatggaaaacctaaagcttgctgaagatctggctaagacttgcgtggaaatatactcagtaacctctactggccttgctccagaaatagcttatttcaatattgagggaaattctgaaggtggtcctggtggtgggaacaaaagttcgaaatatttgaatgacataatcataaagcctgctgatcgtcacaatcttttgcgccctgaaactgttgaatcattgttttatctgtatcgcattactggcgattcaaagtatcgtgaatggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="32527" stop="34304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32827" g_stop="32989" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32990" i_stop="33756" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33757" g_stop="33905" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="312" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33906" i_stop="33988" i_length="83">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33989" g_stop="34004" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="328" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E337966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32827" e_stop="32989"/>
          <exon e_start="33757" e_stop="33905"/>
          <exon e_start="33989" e_stop="34004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAGGTGAGTTGAAACATTTTTATTTCCTTCATCACTTTTGGCAACTATCATATTATGTAAGGTGGTGTTTTCAGTTTTCCTTTATCGGTCTTTTTTCTTTTCTTTTTTGAGGAAGGTGAGTTTTTGAAAGTTAAAAGAATTCTGTTGCATATCTTAAACTTCTGATCTGTGTTTTAACTCTTTTATGTCTAGATGTAACACGGATTAATCAGTTGTAAAAGATGTAAGAATTAGGGCCCTTGTGCATTGGCTTAATAAAAGTAGCTTCTAAGAGGGTGTTTGGATTGACTTAAAAGTTGGCCAAACCTACTTTTATGTCGGTTTTTTACTTTTGGAAGTATTTGACAAATATAAAAAATAATTTAAGATAAGTCAAAATTGAGTTAAATAAGTTGGGAAGGGTTTGACAGACTTAAAATAAGTTAAAAACCAAAAGTACGTTTTACCCTACTTTTTATTTTTTGACTTAAAAGTCATTCAGGTTGACTTTTTATTTTTGACGTATCAGCTACTTTTATTAAGCCAATCCAAAGGGGCTCTAAGTCAAAAATAAAAAGTCAAACTGAAATGAATCAAACCAATCTGGAAAACAATCAGAGTGAAAATGTGCCTATCTTGACTTGAACAATCTAATATCATCATTAGTGAGATGCAATATAAATTAATGATAGTGTTCATATGTCTACCCTGACTTGAAGTACTATTATGACATAATTGGAAAAATTCTTGCATCATAAATGTTTTTCTGGTATCTTGTTTTCTTCGAGCAGGGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAAGTATGTTCTTATTTTAAAGTTGTGTACTTTTGCTTTATGGGCTTGAACAACTAAGTTTGTTAACTTTGTGGACTCTTCTTCAGGTATCGTGAATGGGGC</genome_strand>
        <mrna_strand>TACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAA...................................................................................GTATCGTGAATGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231591" ref_strand="+" ref_description="SGN-E231591 [cLED-4-N12]">
      <seq>taagattgattctggaggttacacttctcttgacgatgttactgttattcctccacaaagaagagacaagatggagacttttttcttgggtgaaacactcaaatacatctatttgctgttcggtaatagcaccacgatccctttggatgagtatgtattcaacacagaagctcatcctattccaataatttctagaagtgtatgattgatactttgcttgcaagaagaaatattttttccagtattagcggagattcagatgacccaagagaacatgtttcagcaatctcagatggcattttaattcgtttaagtcggttcattaggttggaagtgacctcatggaagcttattcacaaatgttccatttagatgaagctccctgaaatttccatctgaaacttctactcgagtgatacttgaggcggggaattttcgatgaacatcttgtttgtgtagtgcatacagagataattacaatttttattcaagtgttaaaggcttaaagctctatgttgttattcagggaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="33737" stop="34869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34037" g_stop="34569" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E231591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34037" e_stop="34569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGA</genome_strand>
        <mrna_strand>TAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225179" ref_strand="+" ref_description="SGN-E225179 [cLEL-17-I19](-)">
      <seq>atcctatccaataatttctagaagtgtatgattgatactttgctgcaagaagaaatattttttccagtattagcggagattcagatgacccaagagaacatgtttcagcaatctcagatggcattttaattcgtttaagtcggttcattaggttggaagtgacctcatggaagcttattcacaaatgttccatttagatgaagctccctgaaatttccatctgaaacttctactcgagtgatacttgaggcggggaattttcgatgaacatcttgtttgtgtagtgcatacagagataattacaatttttattcaagtgttaaaggcttaaagctctatgttgttattcagggaaagaacaggatagtgtaatccttctgtagtaagttggaacttattcttgtaattgatgtattacatctacagctttgatttctccctttggagatacaaagattgaatcatttagcctaacatttacacaatgagatcaatatacaattgctttgaacctcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="33910" stop="35028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34210" g_stop="34728" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="534"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E225179" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34210" e_stop="34728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGAACAGGATAGTGTAATCCTTCTGTAGTAAGTTGGAACTTATTCTTGTAATTGATGTATTACATCTACAGCTTTGATTTCTCCCTTTGGAGATACAAAGATTGAATCATTTAGCCTAACATTTACACAATGAGATCAATATACAATTGCTTTGAACCTCTT</genome_strand>
        <mrna_strand>ATCCTA-TCCAATAATTTCTAGAAGTGTATGATTGATACTTTGC-TGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGAACAGGATAGTGTAATCCTTCTGTAGTAAGTTGGAACTTATTCTTGTAATTGATGTATTACATCTACAGCTTTGATTTCTCCCTTTGGAGATACAAAGATTGAATCATTTAGCCTAACATTTACACAATGAGATCAATATACAATTGCTTTGAACCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225615" ref_strand="+" ref_description="SGN-E225615 [cLEL-17-I19](-)">
      <seq>tattttttccagtatttagcggagattcagatgacccaagagaacatgtttcagcaatctcagatggcattttaattcgtttaagtcggttcattaggttggaagtgacctcatggaagcttattcacaaatgttccatttagatgaagctccctgaaatttccatctgaaacttctactcgagtgatacttgaggcggggaattttcgatgaacatcttgtttgtgtagtgcatacagagataattacaatttttattcaagtgttaaaggcttaaagctctatgttgttattcagggaaagaacaggatagtgtaatccttctgtagtaagttggaacttattcttgtaattgatgtattacatctacagctttgatttctccctttggagatacaaagattgaatcatttagcctaacatttacacaatgagatcaatatacaattgctttgaacctcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="33967" stop="35028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34267" g_stop="34728" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="480"/>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E225615" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34267" e_stop="34728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTCCAGTA-TTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGAACAGGATAGTGTAATCCTTCTGTAGTAAGTTGGAACTTATTCTTGTAATTGATGTATTACATCTACAGCTTTGATTTCTCCCTTTGGAGATACAAAGATTGAATCATTTAGCCTAACATTTACACAATGAGATCAATATACAATTGCTTTGAACCTCTT</genome_strand>
        <mrna_strand>TATTTTTTCCAGTATTTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGAACAGGATAGTGTAATCCTTCTGTAGTAAGTTGGAACTTATTCTTGTAATTGATGTATTACATCTACAGCTTTGATTTCTCCCTTTGGAGATACAAAGATTGAATCATTTAGCCTAACATTTACACAATGAGATCAATATACAATTGCTTTGAACCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="54926" stop="56312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55225" g_stop="55662" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55663" i_stop="55732" i_length="70">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55733" g_stop="56014" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="717" r_length="282" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55225" e_stop="55662"/>
          <exon e_start="55733" e_stop="56014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATAATATGTATTGATAATATTGTAAACCCTGCTATGTGTTTAATTGTATGCTTGCATGAATGTAATTATATAATTATGATTATATAAGCATGACAAAATTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGACCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGATATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTGTTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCATGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCGG-GTGTCACGAACCGACACGTAAATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATATTAATATACTCAATCTAATGAACATGG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACAC......................................................................GTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="54926" stop="55927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55225" g_stop="55628" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55225" e_stop="55628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATAATATGTATTGATAATATTGTAAACCCTGCTATGTGTTTAATTGTATGCTTGCATGAATGTAATTATATAATTATGATTATATAAGCATGACAAAATTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGACCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGATATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="55559" stop="56396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55859" g_stop="56096" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55859" e_stop="56096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAAATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATATTAATATACTCAATCTAATGAACATGGTTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAATTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="55560" stop="56638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55860" g_stop="56338" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55860" e_stop="56338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAAATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATATTAATATACTCAATCTAATGAACATGGTTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAATTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTG-TTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCAACTCAACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGA-CCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="-" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="56485" stop="55605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56185" g_stop="55873" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56185" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAATTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAACCATGTTCATTAGATTGAGTATATTAATATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATTTAC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290199" ref_strand="+" ref_description="SGN-E290199 [cLET-5-C4]">
      <seq>tagaatagaaaaaaaaagggaatttattctttgtcgccatggaaatagcttcaagctcaacaaaattcaaatgggtcactgcatttcttctgcttcttgcttgctctgccgctggacaagtacaagatggtccgttagttaacggtaattttgagaccccgccgtcaggtggtttctcttccggcgatggattctccgacggtccatctgaaatccccagctggaaatcaaacggcaccgtagagttagtagaatccgggcaaaaacagggtggaatgatcctcattgtaccacaaggtagacacgcagtccggcttggaaacgacgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="60221" stop="62165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60521" g_stop="60649" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60650" i_stop="61696" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61697" g_stop="61898" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="331" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E290199" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60521" e_stop="60649"/>
          <exon e_start="61697" e_stop="61898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGA</genome_strand>
        <mrna_strand>TAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATTGTACCACAAGGTAGACACGCAGTCCGGCTTGGAAACGACGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318670" ref_strand="+" ref_description="SGN-E318670 [cTOB-9-G19]">
      <seq>aatagaaaaaaaaagggaatttattctttgtcgccatggaaatagcttcaagctcaacaaaattcaaatgggtcactgcatttcttctgcttcttgcttgctctgccgctggacaagtacaagatggtccgttagttaacggtaattttgagaccccgccgtcaggtggtttctcttccggcgatggattctccgacggtccatctgaaatccccagctggaaatcaaacggcaccgtagagttagtagaatccgggcaaaaacagggtggaatgatcctcattgtaccacacggtagacacgcagtccggcttggaaacgacgccgagataagccaagagctcaaagtagagaaaggttccatttactcgatcactttcagcgcggctcgcacttgcgctcagctagagtcactcaacgtttcagttcctcctgcctcacagaccattgatcttcagactctgtatagtgttcagggctgggattcttacgcgtgggcctttcaggctgaagaagatgatgtgcgggtcgtttttacaaatcctggcatggaagatgaccccacttgtggacccattattgatgatattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0185P07-uslut/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0185P07.1" temp_strand="+" temp_description="C02HBa0185P07.1  AC215412.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0185P07 sequenced_by:kribb upload_account_name:korea">
        <position start="60224" stop="62165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60524" g_stop="60649" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60650" i_stop="61696" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61697" g_stop="62164" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="594" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0185P07.1" gen_strand="+" ref_id="SGN-E318670" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0185P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60524" e_stop="60649"/>
          <exon e_start="61697" e_stop="62164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTA</genome_strand>
        <mrna_strand>AATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATTGTACCACACGGTAGACACGCAGTCCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>44</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6046" PGL_stop="8355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6046" e_stop="6788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="6046" e_stop="6788" e_length="743"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6046" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6058" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6059" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6063" stop="6732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6067" stop="6732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6068" stop="6788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6070" stop="6570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6073" stop="6727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6074" stop="6732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6077" stop="6732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6079" stop="6732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6083" stop="6552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6084" stop="6732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6084" stop="6732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6084" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6085" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6085" stop="6726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6086" stop="6745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6087" stop="6461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6093" stop="6567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6121" stop="6540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323847" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCAAATTCAAAATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGGATTGTATTTCTCTTTCTATTTGGACCTTTTTAGCTGCATACATAAAATCTACACCTCTG</gDNA_template>
            <first_frame> S  Q  I  Q  N  Y  N  P  H  P  P  Q  I  A  *  K  K  F  K  S  L  *  N  R  K  K  H  V  S  S  N  R  K  P  P  *  K  C  R  N  L  H  R  S  G  G  L  Q  A  E  I  T  *  T  P  E  G  N  Q  H  A  *  W  S  S  P  T  *  R  H  C  R  S  R  P  Q  R  R  N  R  I  R  V  A  E  T  E  E  G  E  R  A  Q  V  *  E  D  R  E  A  R  L  V  R  Y  *  G  D  G  V  C  G  E  S  P  D  E  E  A  H  R  R  K  E  Q  G  D  P  H  L  G  Y  D  F  *  Y  F  N  F  R  S  G  V  *  E  D  *  L  C  Y  P  Y  W  T  F  *  V  F  S  C  V  G  F  *  R  G  G  R  R  R  G  E  E  V  K  L  K  V  S  G  V  F  *  G  I  N  N  V  F  F  Y  F  T  S  T  I  *  I  I  K  L  L  F  F  F  I  I  Y  F  N  P  I  L  C  N  Q  S  *  K  *  K  W  N  Y  S  L  Y  W  I  V  F  L  F  L  F  G  P  F  *  L  H  T  *  N  L  H  L   </first_frame>
            <second_frame>  R  K  F  K  I  T  I  L  T  L  L  K  S  L  K  K  N  S  N  L  C  E  I  G  K  N  M  S  Q  V  I  A  S  H  R  E  N  A  E  I  Y  T  D  P  V  V  C  K  Q  K  S  L  E  L  L  K  E  I  N  M  P  N  G  L  L  P  L  E  D  I  V  E  V  G  R  N  A  E  T  G  F  V  W  L  K  Q  K  K  A  K  E  H  K  Y  K  K  I  G  K  L  V  W  Y  D  T  E  V  T  A  F  V  E  N  R  R  M  K  K  L  T  G  V  K  S  K  E  I  L  I  W  V  T  I  S  D  I  S  I  S  D  P  E  C  K  K  I  N  F  A  T  P  T  G  L  S  R  S  F  P  V  S  A  F  E  E  E  E  E  E  E  E  K  K  *  S  *  R  F  Q  G  Y  F  K  E  L  I  M  C  S  F  I  L  L  V  L  F  K  *  L  N  Y  C  F  F  L  *  S  I  L  I  L  S  Y  V  T  K  V  K  N  E  N  G  T  I  V  Y  T  G  L  Y  F  S  F  Y  L  D  L  F  S  C  I  H  K  I  Y  T  S  </second_frame>
            <third_frame>   A  N  S  K  L  Q  S  S  P  S  S  N  R  L  K  K  I  Q  I  S  V  K  S  E  K  T  C  L  K  *  S  Q  A  T  V  K  M  P  K  F  T  Q  I  R  W  F  A  S  R  N  H  L  N  S  *  R  K  S  T  C  L  M  V  F  S  H  L  K  T  L  *  K  S  A  A  T  P  K  P  D  S  C  G  *  N  R  R  R  R  K  S  T  S  I  R  R  S  G  S  S  S  G  T  I  L  R  *  R  R  L  W  R  I  A  G  *  R  S  S  P  A  *  R  A  R  R  S  S  S  G  L  R  F  L  I  F  Q  F  P  I  R  S  V  R  R  L  T  L  L  P  L  L  D  F  L  G  L  F  L  C  R  L  L  K  R  R  K  K  K  R  R  R  S  E  A  E  G  F  R  G  I  L  R  N  *  *  C  V  L  L  F  Y  *  Y  Y  L  N  N  *  I  T  V  F  F  Y  N  L  F  *  S  Y  P  M  *  P  K  L  K  M  K  M  E  L  *  F  I  L  D  C  I  S  L  S  I  W  T  F  L  A  A  Y  I  K  S  T  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6047" stop="6568"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKFKITILTLLKSLKKNSNLCEIGKNMSQVIASHRENAEIYTDPVVCKQKSLELLKEINMPNGLLPLEDIVEVGRNAETGFVWLKQKKAKEHKYKKIGKLVWYDTEVTAFVENRRMKKLTGVKSKEILIWVTISDISISDPECKKINFATPTGLSRSFPVSAFEEEEEEEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6046" e_stop="6729"/>
            <exon e_start="8341" e_stop="8355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.130" e_score="1.000"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6046" e_stop="6729" e_length="684"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.130">
            <gDNA_intron_boundary i_start="6730" i_stop="8340" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="0.733">
            <gDNA_exon_boundary e_start="8341" e_stop="8355" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6046" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6058" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6059" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6070" stop="6570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6073" stop="6727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6083" stop="6552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6084" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6085" stop="6729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6085" stop="6726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6087" stop="6461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6093" stop="6567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6121" stop="6540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6144" stop="6729"/>
              <exon start="8341" stop="8355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCAAATTCAAAATTACAATCCTCACCCTCCTCAAATCGCTTAAAAAAAATTCAAATCTCTGTGAAATCGGAAAAAACATGTCTCAAGTAATCGCAAGCCACCGTGAAAATGCCGAAATTTACACAGATCCGGTGGTTTGCAAGCAGAAATCACTTGAACTCCTGAAGGAAATCAACATGCCTAATGGTCTTCTCCCACTTGAAGACATTGTAGAAGTCGGCCGCAACGCCGAAACCGGATTCGTGTGGCTGAAACAGAAGAAGGCGAAAGAGCACAAGTATAAGAAGATCGGGAAGCTCGTCTGGTACGATACTGAGGTGACGGCGTTTGTGGAGAATCGCCGGATGAAGAAGCTCACCGGCGTAAAGAGCAAGGAGATCCTCATCTGGGTTACGATTTCTGATATTTCAATTTCCGATCCGGAGTGTAAGAAGATTAACTTTGCTACCCCTACTGGACTTTCTAGGTCTTTTCCTGTGTCGGCTTTTGAAGAGGAGGAAGAAGAAGAGGAGAAGAAGTGAAGCTGAAGGTTTCAGGGGTATTTTAAGGAATTAATAATGTGTTCTTTTATTTTACTAGTACTATTTAAATAATTAAATTACTGTTTTTTTTTATAATCTATTTTAATCCTATCCTATGTAACCAAAGTTAAAAATGAAAATGGAACTATAGTTTATACTGG : CAAAAAGAGAGAAAA</gDNA_template>
            <first_frame> S  Q  I  Q  N  Y  N  P  H  P  P  Q  I  A  *  K  K  F  K  S  L  *  N  R  K  K  H  V  S  S  N  R  K  P  P  *  K  C  R  N  L  H  R  S  G  G  L  Q  A  E  I  T  *  T  P  E  G  N  Q  H  A  *  W  S  S  P  T  *  R  H  C  R  S  R  P  Q  R  R  N  R  I  R  V  A  E  T  E  E  G  E  R  A  Q  V  *  E  D  R  E  A  R  L  V  R  Y  *  G  D  G  V  C  G  E  S  P  D  E  E  A  H  R  R  K  E  Q  G  D  P  H  L  G  Y  D  F  *  Y  F  N  F  R  S  G  V  *  E  D  *  L  C  Y  P  Y  W  T  F  *  V  F  S  C  V  G  F  *  R  G  G  R  R  R  G  E  E  V  K  L  K  V  S  G  V  F  *  G  I  N  N  V  F  F  Y  F  T  S  T  I  *  I  I  K  L  L  F  F  F  I  I  Y  F  N  P  I  L  C  N  Q  S  *  K  *  K  W  N  Y  S  L  Y  W  :  Q  K  E  R  K </first_frame>
            <second_frame>  R  K  F  K  I  T  I  L  T  L  L  K  S  L  K  K  N  S  N  L  C  E  I  G  K  N  M  S  Q  V  I  A  S  H  R  E  N  A  E  I  Y  T  D  P  V  V  C  K  Q  K  S  L  E  L  L  K  E  I  N  M  P  N  G  L  L  P  L  E  D  I  V  E  V  G  R  N  A  E  T  G  F  V  W  L  K  Q  K  K  A  K  E  H  K  Y  K  K  I  G  K  L  V  W  Y  D  T  E  V  T  A  F  V  E  N  R  R  M  K  K  L  T  G  V  K  S  K  E  I  L  I  W  V  T  I  S  D  I  S  I  S  D  P  E  C  K  K  I  N  F  A  T  P  T  G  L  S  R  S  F  P  V  S  A  F  E  E  E  E  E  E  E  E  K  K  *  S  *  R  F  Q  G  Y  F  K  E  L  I  M  C  S  F  I  L  L  V  L  F  K  *  L  N  Y  C  F  F  L  *  S  I  L  I  L  S  Y  V  T  K  V  K  N  E  N  G  T  I  V  Y  T  G :   K  K  R  E   </second_frame>
            <third_frame>   A  N  S  K  L  Q  S  S  P  S  S  N  R  L  K  K  I  Q  I  S  V  K  S  E  K  T  C  L  K  *  S  Q  A  T  V  K  M  P  K  F  T  Q  I  R  W  F  A  S  R  N  H  L  N  S  *  R  K  S  T  C  L  M  V  F  S  H  L  K  T  L  *  K  S  A  A  T  P  K  P  D  S  C  G  *  N  R  R  R  R  K  S  T  S  I  R  R  S  G  S  S  S  G  T  I  L  R  *  R  R  L  W  R  I  A  G  *  R  S  S  P  A  *  R  A  R  R  S  S  S  G  L  R  F  L  I  F  Q  F  P  I  R  S  V  R  R  L  T  L  L  P  L  L  D  F  L  G  L  F  L  C  R  L  L  K  R  R  K  K  K  R  R  R  S  E  A  E  G  F  R  G  I  L  R  N  *  *  C  V  L  L  F  Y  *  Y  Y  L  N  N  *  I  T  V  F  F  Y  N  L  F  *  S  Y  P  M  *  P  K  L  K  M  K  M  E  L  *  F  I  L   : A  K  R  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6047" stop="6568"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKFKITILTLLKSLKKNSNLCEIGKNMSQVIASHRENAEIYTDPVVCKQKSLELLKEINMPNGLLPLEDIVEVGRNAETGFVWLKQKKAKEHKYKKIGKLVWYDTEVTAFVENRRMKKLTGVKSKEILIWVTISDISISDPECKKINFATPTGLSRSFPVSAFEEEEEEEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10659" PGL_stop="17789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10659" e_stop="10737"/>
            <exon e_start="10844" e_stop="10925"/>
            <exon e_start="11039" e_stop="11119"/>
            <exon e_start="12092" e_stop="12205"/>
            <exon e_start="12304" e_stop="12405"/>
            <exon e_start="13577" e_stop="13635"/>
            <exon e_start="15001" e_stop="15103"/>
            <exon e_start="15750" e_stop="15815"/>
            <exon e_start="15896" e_stop="16314"/>
            <exon e_start="17776" e_stop="17789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.236" e_score="0.998"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10659" e_stop="10737" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.756">
            <gDNA_intron_boundary i_start="10738" i_stop="10843" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10844" e_stop="10925" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="10926" i_stop="11038" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11039" e_stop="11119" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11120" i_stop="12091" i_length="972"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12092" e_stop="12205" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.894">
            <gDNA_intron_boundary i_start="12206" i_stop="12303" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12304" e_stop="12405" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12406" i_stop="13576" i_length="1171"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13577" e_stop="13635" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13636" i_stop="15000" i_length="1365"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15001" e_stop="15103" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.980">
            <gDNA_intron_boundary i_start="15104" i_stop="15749" i_length="646"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15750" e_stop="15815" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="15816" i_stop="15895" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="15896" e_stop="16314" e_length="419"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.236">
            <gDNA_intron_boundary i_start="16315" i_stop="17775" i_length="1461"/>
          </intron>
          <exon e_serial="10" e_score="0.714">
            <gDNA_exon_boundary e_start="17776" e_stop="17789" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10659" stop="10737"/>
              <exon start="10844" stop="10925"/>
              <exon start="11039" stop="11119"/>
              <exon start="12092" stop="12205"/>
              <exon start="12304" stop="12405"/>
              <exon start="13577" stop="13635"/>
              <exon start="15001" stop="15103"/>
              <exon start="15750" stop="15815"/>
              <exon start="15896" stop="16314"/>
              <exon start="17776" stop="17789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10671" stop="10737"/>
              <exon start="10844" stop="10925"/>
              <exon start="11039" stop="11119"/>
              <exon start="12092" stop="12205"/>
              <exon start="12304" stop="12405"/>
              <exon start="13577" stop="13625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10676" stop="10737"/>
              <exon start="10844" stop="10925"/>
              <exon start="11039" stop="11119"/>
              <exon start="12092" stop="12205"/>
              <exon start="12304" stop="12405"/>
              <exon start="13577" stop="13635"/>
              <exon start="15001" stop="15103"/>
              <exon start="15750" stop="15815"/>
              <exon start="15896" stop="15905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10677" stop="10737"/>
              <exon start="10844" stop="10925"/>
              <exon start="11039" stop="11119"/>
              <exon start="12092" stop="12205"/>
              <exon start="12304" stop="12405"/>
              <exon start="13577" stop="13635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10691" stop="10737"/>
              <exon start="10844" stop="10925"/>
              <exon start="11039" stop="11119"/>
              <exon start="12092" stop="12205"/>
              <exon start="12304" stop="12385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277303" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10844" stop="10925"/>
              <exon start="11039" stop="11119"/>
              <exon start="12092" stop="12205"/>
              <exon start="12304" stop="12405"/>
              <exon start="13577" stop="13635"/>
              <exon start="15001" stop="15103"/>
              <exon start="15750" stop="15815"/>
              <exon start="15896" stop="15983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15078" stop="15103"/>
              <exon start="15750" stop="15815"/>
              <exon start="15896" stop="16174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277189" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTTCAGTTCAAACAAAATCTGAACAAAGGGTTTTTGGATCTGTAGCAAAATTTCAACAAAGATGTTTCTTACAAG : AACTGAGTATGATAGAGGTGTTAACACTTTCTCGCCTGAAGGACGATTGTTTCAAGTTGAATATGCTATTGAAGCTATCAAG : TTGGGTTCAACTGCAATTGGATTGAAGACTAAGGAAGGAGTTGTTCTTGCTGTGGAGAAGCGCATTACTTCACCACTTCTG : GAGCCAAGCAGTGTGGAGAAAATTATGGAAATCGACGAGCATATTGGCTGTGCAATGAGTGGATTGATAGCTGATGCACGAACACTTGTGGAACATGCACGGGTTGAAACTCAG : AACCATAGATTCTCTTATGGCGAGCCCATGACTGTTGAGTCCACTACCCAAGCTCTCTGTGATTTGGCGTTGCGATTTGGTGAGGGCGATGAAGAATCTATG : TCCAGGCCTTTTGGTGTGTCCCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCTT : GTACTATACTGATCCTTCTGGTACATTCTGGCAATGCAATGCTAAAGCTATTGGGTCAGGTTCTGAAGGTGCTGATAGCTCTTTGCAGGAGCAGTATAACAAG : GACCTTACCCTTAAAGAGGCTGAAACCATAGCACTGTCCATTCTCAAGCAAGTGATGGAAGAGAAG : GTGACTCCCAATAATGTTGATATTGCGAGGGTATCTCCAACTTACCATCTATACTCACCATCGGAGGTGGAAGAGGTTATCAGCCGCCTATAAGAAAGCATGTGATCACGCTCGTTATGATATTTTTCTTGTATGACAAAAACACTTTCTTGTTGCTGCAGCCCTGGAGCCTGGAGGTCATTGGATTGTTTTTTCCTTCTTCCAAGGCTAGGAATTGATTCAGACAAGTGTTTTCTGTATGTTCATTACATTATTTGCTTCAAGGATTTAAGTCCATCTATATCTCTTGCTGCTTTATGAGTTGGGATTTGTTCTGAAAATAGGAGTTTTAAAGTGTTTTGAAAGCAAGAGGCAAGTACGATACTGTGTAGGATTATATAAATAGGGGTTTACATTTTCTTGAATGAAATATTTCCAAT : AATACTAAAAGAAA</gDNA_template>
            <first_frame> *  S  S  V  Q  T  K  S  E  Q  R  V  F  G  S  V  A  K  F  Q  Q  R  C  F  L  Q   : E  L  S  M  I  E  V  L  T  L  S  R  L  K  D  D  C  F  K  L  N  M  L  L  K  L  S  S :   W  V  Q  L  Q  L  D  *  R  L  R  K  E  L  F  L  L  W  R  S  A  L  L  H  H  F  W :   S  Q  A  V  W  R  K  L  W  K  S  T  S  I  L  A  V  Q  *  V  D  *  *  L  M  H  E  H  L  W  N  M  H  G  L  K  L  R :   T  I  D  S  L  M  A  S  P  *  L  L  S  P  L  P  K  L  S  V  I  W  R  C  D  L  V  R  A  M  K  N  L  C :   P  G  L  L  V  C  P  F  S  L  L  V  M  M  R  M  V  P  A   : C  T  I  L  I  L  L  V  H  S  G  N  A  M  L  K  L  L  G  Q  V  L  K  V  L  I  A  L  C  R  S  S  I  T  R :   T  L  P  L  K  R  L  K  P  *  H  C  P  F  S  S  K  *  W  K  R  R :   *  L  P  I  M  L  I  L  R  G  Y  L  Q  L  T  I  Y  T  H  H  R  R  W  K  R  L  S  A  A  Y  K  K  A  C  D  H  A  R  Y  D  I  F  L  V  *  Q  K  H  F  L  V  A  A  A  L  E  P  G  G  H  W  I  V  F  S  F  F  Q  G  *  E  L  I  Q  T  S  V  F  C  M  F  I  T  L  F  A  S  R  I  *  V  H  L  Y  L  L  L  L  Y  E  L  G  F  V  L  K  I  G  V  L  K  C  F  E  S  K  R  Q  V  R  Y  C  V  G  L  Y  K  *  G  F  T  F  S  *  M  K  Y  F  Q   : *  Y  *  K  K </first_frame>
            <second_frame>  N  L  Q  F  K  Q  N  L  N  K  G  F  L  D  L  *  Q  N  F  N  K  D  V  S  Y  K  :  N  *  V  *  *  R  C  *  H  F  L  A  *  R  T  I  V  S  S  *  I  C  Y  *  S  Y  Q   : V  G  F  N  C  N  W  I  E  D  *  G  R  S  C  S  C  C  G  E  A  H  Y  F  T  T  S   : G  A  K  Q  C  G  E  N  Y  G  N  R  R  A  Y  W  L  C  N  E  W  I  D  S  *  C  T  N  T  C  G  T  C  T  G  *  N  S   : E  P  *  I  L  L  W  R  A  H  D  C  *  V  H  Y  P  S  S  L  *  F  G  V  A  I  W  *  G  R  *  R  I  Y   : V  Q  A  F  W  C  V  P  S  H  C  W  S  *  *  E  W  S  Q  L  :  V  L  Y  *  S  F  W  Y  I  L  A  M  Q  C  *  S  Y  W  V  R  F  *  R  C  *  *  L  F  A  G  A  V  *  Q   : G  P  Y  P  *  R  G  *  N  H  S  T  V  H  S  Q  A  S  D  G  R  E   : G  D  S  Q  *  C  *  Y  C  E  G  I  S  N  L  P  S  I  L  T  I  G  G  G  R  G  Y  Q  P  P  I  R  K  H  V  I  T  L  V  M  I  F  F  L  Y  D  K  N  T  F  L  L  L  Q  P  W  S  L  E  V  I  G  L  F  F  P  S  S  K  A  R  N  *  F  R  Q  V  F  S  V  C  S  L  H  Y  L  L  Q  G  F  K  S  I  Y  I  S  C  C  F  M  S  W  D  L  F  *  K  *  E  F  *  S  V  L  K  A  R  G  K  Y  D  T  V  *  D  Y  I  N  R  G  L  H  F  L  E  *  N  I  S  N  :  N  T  K  R   </second_frame>
            <third_frame>   I  F  S  S  N  K  I  *  T  K  G  F  W  I  C  S  K  I  S  T  K  M  F  L  T  R :   T  E  Y  D  R  G  V  N  T  F  S  P  E  G  R  L  F  Q  V  E  Y  A  I  E  A  I  K  :  L  G  S  T  A  I  G  L  K  T  K  E  G  V  V  L  A  V  E  K  R  I  T  S  P  L  L  :  E  P  S  S  V  E  K  I  M  E  I  D  E  H  I  G  C  A  M  S  G  L  I  A  D  A  R  T  L  V  E  H  A  R  V  E  T  Q  :  N  H  R  F  S  Y  G  E  P  M  T  V  E  S  T  T  Q  A  L  C  D  L  A  L  R  F  G  E  G  D  E  E  S  M  :  S  R  P  F  G  V  S  L  L  I  A  G  H  D  E  N  G  P  S  L :   Y  Y  T  D  P  S  G  T  F  W  Q  C  N  A  K  A  I  G  S  G  S  E  G  A  D  S  S  L  Q  E  Q  Y  N  K  :  D  L  T  L  K  E  A  E  T  I  A  L  S  I  L  K  Q  V  M  E  E  K  :  V  T  P  N  N  V  D  I  A  R  V  S  P  T  Y  H  L  Y  S  P  S  E  V  E  E  V  I  S  R  L  *  E  S  M  *  S  R  S  L  *  Y  F  S  C  M  T  K  T  L  S  C  C  C  S  P  G  A  W  R  S  L  D  C  F  F  L  L  P  R  L  G  I  D  S  D  K  C  F  L  Y  V  H  Y  I  I  C  F  K  D  L  S  P  S  I  S  L  A  A  L  *  V  G  I  C  S  E  N  R  S  F  K  V  F  *  K  Q  E  A  S  T  I  L  C  R  I  I  *  I  G  V  Y  I  F  L  N  E  I  F  P  I :   I  L  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10685" stop="10737"/>
                    <exon start="10844" stop="10925"/>
                    <exon start="11039" stop="11119"/>
                    <exon start="12092" stop="12205"/>
                    <exon start="12304" stop="12405"/>
                    <exon start="13577" stop="13635"/>
                    <exon start="15001" stop="15103"/>
                    <exon start="15750" stop="15815"/>
                    <exon start="15896" stop="15988"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKGFWICSKISTKMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLKEAETIALSILKQVMEEKVTPNNVDIARVSPTYHLYSPSEVEEVISRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25706" PGL_stop="29940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25706" e_stop="25989"/>
            <exon e_start="29744" e_stop="29940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.976" e_score="0.982"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="25706" e_stop="25989" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.976">
            <gDNA_intron_boundary i_start="25990" i_stop="29743" i_length="3754"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="29744" e_stop="29940" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25706" stop="25989"/>
              <exon start="29744" stop="29857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25731" stop="25989"/>
              <exon start="29744" stop="29940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACTCTTCCATCGATGGTCACCTCCGGATTCCGGCGACACCCAGTTTAATATTCATCTGGTTCTGTACAATAATACACTCCTATATACGTGCACGCGCCGCTGTACTATAGTAGGCAATACACACGCGTTTACGGCTGCTGTAAGGCAGAGCCAAATTGAGAATCTGAAGTTGTTGCTCTTTTGTTTTGTATCGAGAATCAGACGATGTCGAAATCATTGCCCTATTCAATGAAAGATGTGCACTACGATAACGCCAAGTTCAGACAGCGATCCGTATCTCAG : GTAATTTCTCAGGTTCTATTAACCAGTAATGGGAAACGAGATTATTTGAAATGTAGCACTGGGAAACTTCTCGTGTTACTGATGCTTGGTGGTTTAGCATATCTAGTACTGACTAATAAAAGTGCTGTCCATCCCGTGTCTGATGGTATAGCAAAAAATGATGGATCAAAGGAAGGAGAAAATCTCATGACTCATGG</gDNA_template>
            <first_frame> S  L  F  H  R  W  S  P  P  D  S  G  D  T  Q  F  N  I  H  L  V  L  Y  N  N  T  L  L  Y  T  C  T  R  R  C  T  I  V  G  N  T  H  A  F  T  A  A  V  R  Q  S  Q  I  E  N  L  K  L  L  L  F  C  F  V  S  R  I  R  R  C  R  N  H  C  P  I  Q  *  K  M  C  T  T  I  T  P  S  S  D  S  D  P  Y  L  R :   *  F  L  R  F  Y  *  P  V  M  G  N  E  I  I  *  N  V  A  L  G  N  F  S  C  Y  *  C  L  V  V  *  H  I  *  Y  *  L  I  K  V  L  S  I  P  C  L  M  V  *  Q  K  M  M  D  Q  R  K  E  K  I  S  *  L  M  </first_frame>
            <second_frame>  H  S  S  I  D  G  H  L  R  I  P  A  T  P  S  L  I  F  I  W  F  C  T  I  I  H  S  Y  I  R  A  R  A  A  V  L  *  *  A  I  H  T  R  L  R  L  L  *  G  R  A  K  L  R  I  *  S  C  C  S  F  V  L  Y  R  E  S  D  D  V  E  I  I  A  L  F  N  E  R  C  A  L  R  *  R  Q  V  Q  T  A  I  R  I  S   : G  N  F  S  G  S  I  N  Q  *  W  E  T  R  L  F  E  M  *  H  W  E  T  S  R  V  T  D  A  W  W  F  S  I  S  S  T  D  *  *  K  C  C  P  S  R  V  *  W  Y  S  K  K  *  W  I  K  G  R  R  K  S  H  D  S  W </second_frame>
            <third_frame>   T  L  P  S  M  V  T  S  G  F  R  R  H  P  V  *  Y  S  S  G  S  V  Q  *  Y  T  P  I  Y  V  H  A  P  L  Y  Y  S  R  Q  Y  T  R  V  Y  G  C  C  K  A  E  P  N  *  E  S  E  V  V  A  L  L  F  C  I  E  N  Q  T  M  S  K  S  L  P  Y  S  M  K  D  V  H  Y  D  N  A  K  F  R  Q  R  S  V  S  Q  :  V  I  S  Q  V  L  L  T  S  N  G  K  R  D  Y  L  K  C  S  T  G  K  L  L  V  L  L  M  L  G  G  L  A  Y  L  V  L  T  N  K  S  A  V  H  P  V  S  D  G  I  A  K  N  D  G  S  K  E  G  E  N  L  M  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25867" stop="25989"/>
                    <exon start="29744" stop="29938"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESEVVALLFCIENQTMSKSLPYSMKDVHYDNAKFRQRSVSQVISQVLLTSNGKRDYLKCSTGKLLVLLMLGGLAYLVLTNKSAVHPVSDGIAKNDGSKEGENLMTH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25706" stop="25939"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFHRWSPPDSGDTQFNIHLVLYNNTLLYTCTRRCTIVGNTHAFTAAVRQSQIENLKLLLFCFVSRIRRCRNHCPIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32020" PGL_stop="34728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32020" e_stop="32211"/>
            <exon e_start="32792" e_stop="32989"/>
            <exon e_start="33757" e_stop="33905"/>
            <exon e_start="33989" e_stop="34728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="32020" e_stop="32211" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32212" i_stop="32791" i_length="580"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32792" e_stop="32989" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32990" i_stop="33756" i_length="767"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33757" e_stop="33905" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.820" acc_prob="0.994">
            <gDNA_intron_boundary i_start="33906" i_stop="33988" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33989" e_stop="34728" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32020" stop="32211"/>
              <exon start="32792" stop="32989"/>
              <exon start="33757" stop="33905"/>
              <exon start="33989" stop="34272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32138" stop="32211"/>
              <exon start="32792" stop="32989"/>
              <exon start="33757" stop="33905"/>
              <exon start="33989" stop="34427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32827" stop="32989"/>
              <exon start="33757" stop="33905"/>
              <exon start="33989" stop="34004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34037" stop="34569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34210" stop="34728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34267" stop="34728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGAGTATCTTATCAAAGTGTGGCTTCAGCAGAAAGGAACTAACTTTTCATACTTGTACGATATGTATGTCGAAGCAATTAAAGGTGTCAGGCACCTTCTTGTTCGCAAATCTGTTCCAAATGGCTTGGTCTTTGTGGGAGAATTGCCATATGGGCAAGAAGGTGGTTTCAGTCCAAAGATGGATCACCTG : GTGTGTTTCCTTCCTGGTACCCTAGCCCTTGGTGCTACAAAGGGGTTGACAAAGGAAAGAGCTATGAGAGAGAACTTGCTCACTTTTGAAGATATGGAAAACCTAAAGCTTGCTGAAGATCTGGCTAAGACTTGCGTGGAAATATACTCAGTAACCTCTACTGGCCTTGCTCCAGAAATAGCTTATTTCAATATTGAG : GGAAATTCTGAAGGTGGTCCTGGTGGTGGGAACAAAAGTTCGAAATATTTGAATGACATAATCATAAAGCCTGCTGATCGTCACAATCTTTTGCGCCCTGAAACTGTTGAATCATTGTTTTATCTGTATCGCATTACTGGCGATTCAAA : GTATCGTGAATGGGGCTGGCAAATTTTTGAGGCATTTGAGAAGTACACTAAGATTGATTCTGGAGGTTACACTTCTCTTGACGATGTTACTGTTATTCCTCCACAAAGAAGAGACAAGATGGAGACTTTTTTCTTGGGTGAAACACTCAAATACATCTATTTGCTGTTCGGTAATAGCACCACGATCCCTTTGGATGAGTATGTATTCAACACAGAAGCTCATCCTATTCCAATAATTTCTAGAAGTGTATGATTGATACTTTGCTTGCAAGAAGAAATATTTTTTCCAGTATTAGCGGAGATTCAGATGACCCAAGAGAACATGTTTCAGCAATCTCAGATGGCATTTTAATTCGTTTAAGTCGGTTCATTAGGTTGGAAGTGACCTCATGGAAGCTTATTCACAAATGTTCCATTTAGATGAAGCTCCCTGAAATTTCCATCTGAAACTTCTACTCGAGTGATACTTGAGGCGGGGAATTTTCGATGAACATCTTGTTTGTGTAGTGCATACAGAGATAATTACAATTTTTATTCAAGTGTTAAAGGCTTAAAGCTCTATGTTGTTATTCAGGGAAAGAACAGGATAGTGTAATCCTTCTGTAGTAAGTTGGAACTTATTCTTGTAATTGATGTATTACATCTACAGCTTTGATTTCTCCCTTTGGAGATACAAAGATTGAATCATTTAGCCTAACATTTACACAATGAGATCAATATACAATTGCTTTGAACCTCTT</gDNA_template>
            <first_frame> Y  E  Y  L  I  K  V  W  L  Q  Q  K  G  T  N  F  S  Y  L  Y  D  M  Y  V  E  A  I  K  G  V  R  H  L  L  V  R  K  S  V  P  N  G  L  V  F  V  G  E  L  P  Y  G  Q  E  G  G  F  S  P  K  M  D  H  L  :  V  C  F  L  P  G  T  L  A  L  G  A  T  K  G  L  T  K  E  R  A  M  R  E  N  L  L  T  F  E  D  M  E  N  L  K  L  A  E  D  L  A  K  T  C  V  E  I  Y  S  V  T  S  T  G  L  A  P  E  I  A  Y  F  N  I  E  :  G  N  S  E  G  G  P  G  G  G  N  K  S  S  K  Y  L  N  D  I  I  I  K  P  A  D  R  H  N  L  L  R  P  E  T  V  E  S  L  F  Y  L  Y  R  I  T  G  D  S  K :   Y  R  E  W  G  W  Q  I  F  E  A  F  E  K  Y  T  K  I  D  S  G  G  Y  T  S  L  D  D  V  T  V  I  P  P  Q  R  R  D  K  M  E  T  F  F  L  G  E  T  L  K  Y  I  Y  L  L  F  G  N  S  T  T  I  P  L  D  E  Y  V  F  N  T  E  A  H  P  I  P  I  I  S  R  S  V  *  L  I  L  C  L  Q  E  E  I  F  F  P  V  L  A  E  I  Q  M  T  Q  E  N  M  F  Q  Q  S  Q  M  A  F  *  F  V  *  V  G  S  L  G  W  K  *  P  H  G  S  L  F  T  N  V  P  F  R  *  S  S  L  K  F  P  S  E  T  S  T  R  V  I  L  E  A  G  N  F  R  *  T  S  C  L  C  S  A  Y  R  D  N  Y  N  F  Y  S  S  V  K  G  L  K  L  Y  V  V  I  Q  G  K  N  R  I  V  *  S  F  C  S  K  L  E  L  I  L  V  I  D  V  L  H  L  Q  L  *  F  L  P  L  E  I  Q  R  L  N  H  L  A  *  H  L  H  N  E  I  N  I  Q  L  L  *  T  S  </first_frame>
            <second_frame>  M  S  I  L  S  K  C  G  F  S  R  K  E  L  T  F  H  T  C  T  I  C  M  S  K  Q  L  K  V  S  G  T  F  L  F  A  N  L  F  Q  M  A  W  S  L  W  E  N  C  H  M  G  K  K  V  V  S  V  Q  R  W  I  T  W :   C  V  S  F  L  V  P  *  P  L  V  L  Q  R  G  *  Q  R  K  E  L  *  E  R  T  C  S  L  L  K  I  W  K  T  *  S  L  L  K  I  W  L  R  L  A  W  K  Y  T  Q  *  P  L  L  A  L  L  Q  K  *  L  I  S  I  L  R :   E  I  L  K  V  V  L  V  V  G  T  K  V  R  N  I  *  M  T  *  S  *  S  L  L  I  V  T  I  F  C  A  L  K  L  L  N  H  C  F  I  C  I  A  L  L  A  I  Q   : S  I  V  N  G  A  G  K  F  L  R  H  L  R  S  T  L  R  L  I  L  E  V  T  L  L  L  T  M  L  L  L  F  L  H  K  E  E  T  R  W  R  L  F  S  W  V  K  H  S  N  T  S  I  C  C  S  V  I  A  P  R  S  L  W  M  S  M  Y  S  T  Q  K  L  I  L  F  Q  *  F  L  E  V  Y  D  *  Y  F  A  C  K  K  K  Y  F  F  Q  Y  *  R  R  F  R  *  P  K  R  T  C  F  S  N  L  R  W  H  F  N  S  F  K  S  V  H  *  V  G  S  D  L  M  E  A  Y  S  Q  M  F  H  L  D  E  A  P  *  N  F  H  L  K  L  L  L  E  *  Y  L  R  R  G  I  F  D  E  H  L  V  C  V  V  H  T  E  I  I  T  I  F  I  Q  V  L  K  A  *  S  S  M  L  L  F  R  E  R  T  G  *  C  N  P  S  V  V  S  W  N  L  F  L  *  L  M  Y  Y  I  Y  S  F  D  F  S  L  W  R  Y  K  D  *  I  I  *  P  N  I  Y  T  M  R  S  I  Y  N  C  F  E  P  L </second_frame>
            <third_frame>   *  V  S  Y  Q  S  V  A  S  A  E  R  N  *  L  F  I  L  V  R  Y  V  C  R  S  N  *  R  C  Q  A  P  S  C  S  Q  I  C  S  K  W  L  G  L  C  G  R  I  A  I  W  A  R  R  W  F  Q  S  K  D  G  S  P   : G  V  F  P  S  W  Y  P  S  P  W  C  Y  K  G  V  D  K  G  K  S  Y  E  R  E  L  A  H  F  *  R  Y  G  K  P  K  A  C  *  R  S  G  *  D  L  R  G  N  I  L  S  N  L  Y  W  P  C  S  R  N  S  L  F  Q  Y  *   : G  K  F  *  R  W  S  W  W  W  E  Q  K  F  E  I  F  E  *  H  N  H  K  A  C  *  S  S  Q  S  F  A  P  *  N  C  *  I  I  V  L  S  V  S  H  Y  W  R  F  K  :  V  S  *  M  G  L  A  N  F  *  G  I  *  E  V  H  *  D  *  F  W  R  L  H  F  S  *  R  C  Y  C  Y  S  S  T  K  K  R  Q  D  G  D  F  F  L  G  *  N  T  Q  I  H  L  F  A  V  R  *  *  H  H  D  P  F  G  *  V  C  I  Q  H  R  S  S  S  Y  S  N  N  F  *  K  C  M  I  D  T  L  L  A  R  R  N  I  F  S  S  I  S  G  D  S  D  D  P  R  E  H  V  S  A  I  S  D  G  I  L  I  R  L  S  R  F  I  R  L  E  V  T  S  W  K  L  I  H  K  C  S  I  *  M  K  L  P  E  I  S  I  *  N  F  Y  S  S  D  T  *  G  G  E  F  S  M  N  I  L  F  V  *  C  I  Q  R  *  L  Q  F  L  F  K  C  *  R  L  K  A  L  C  C  Y  S  G  K  E  Q  D  S  V  I  L  L  *  *  V  G  T  Y  S  C  N  *  C  I  T  S  T  A  L  I  S  P  F  G  D  T  K  I  E  S  F  S  L  T  F  T  Q  *  D  Q  Y  T  I  A  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32020" stop="32211"/>
                    <exon start="32792" stop="32989"/>
                    <exon start="33757" stop="33905"/>
                    <exon start="33989" stop="34241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEYLIKVWLQQKGTNFSYLYDMYVEAIKGVRHLLVRKSVPNGLVFVGELPYGQEGGFSPKMDHLVCFLPGTLALGATKGLTKERAMRENLLTFEDMENLKLAEDLAKTCVEIYSVTSTGLAPEIAYFNIEGNSEGGPGGGNKSSKYLNDIIIKPADRHNLLRPETVESLFYLYRITGDSKYREWGWQIFEAFEKYTKIDSGGYTSLDDVTVIPPQRRDKMETFFLGETLKYIYLLFGNSTTIPLDEYVFNTEAHPIPIISRSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="55225" PGL_stop="56338"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55225" e_stop="55662"/>
            <exon e_start="55733" e_stop="56338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="55225" e_stop="55662" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55663" i_stop="55732" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="55733" e_stop="56338" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55225" stop="55662"/>
              <exon start="55733" stop="56014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55225" stop="55628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55859" stop="56096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55860" stop="56338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATAATATGTATTGATAATATTGTAAACCCTGCTATGTGTTTAATTGTATGCTTGCATGAATGTAATTATATAATTATGATTATATAAGCATGACAAAATTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGACCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGATATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACAC : GTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCGGGTGTCACGAACCGACACGTAAATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATATTAATATACTCAATCTAATGAACATGGTTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAATTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCAACTCAACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  N  M  Y  *  *  Y  C  K  P  C  Y  V  F  N  C  M  L  A  *  M  *  L  Y  N  Y  D  Y  I  S  M  T  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  D  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  :  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  S  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  R  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  *  H  K  R  N  K  D  N  E  S  *  K  I  L  I  Y  S  I  *  *  T  W  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  F  D  G  N  C  *  *  Y  S  A  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  C  T  D  P  L  L  L  C  F  L  L  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  *  P  V  F  V  T  P  D  L  Q  G  E  L  T  L  L  A  W  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  I  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  M  I  I  *  A  *  Q  N  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  D  L  G  I  K  E  G  V  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  I  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T :   *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  *  E  I  G  C  H  E  P  T  R  K  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  Y  *  Y  T  Q  S  N  E  H  G  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  V  L  T  P  Y  F  Y  V  F  F  F  V  I  C  G  V  Q  Q  T  C  R  R  L  Q  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  *  L  G   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  V  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  K  I  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  T  L  V  *  K  K  A  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T   : R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  I  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  R  S  G  V  T  N  R  H  V  N  L  E  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  L  T  Q  E  K  *  R  *  *  I  L  K  D  I  N  I  L  N  L  M  N  M  V  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  I  *  R  *  L  L  M  I  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  L  Y  *  P  P  T  F  M  F  S  S  L  L  F  V  E  C  S  K  R  A  V  V  F  N  S  T  V  I  L  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0185P07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56185" PGL_stop="55873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56185" e_stop="55873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="56185" e_stop="55873" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56185" stop="55873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAATTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAACCATGTTCATTAGATTGAGTATATTAATATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATTTAC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  P  C  S  L  D  *  V  Y  *  Y  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  *  Q  L  P  S  N  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  Q  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  L  *  I  Y </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  R  Q  I  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  T  M  F  I  R  L  S  I  L  I  S  F  K  I  H  Y  L  Y  F  S  C  V  S  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  S  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0185P07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60521" PGL_stop="62164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60521" e_stop="60649"/>
            <exon e_start="61697" e_stop="62164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60521" e_stop="60649" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60650" i_stop="61696" i_length="1047"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="61697" e_stop="62164" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60521" stop="60649"/>
              <exon start="61697" stop="61898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60524" stop="60649"/>
              <exon start="61697" stop="62164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATG : GTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTA</gDNA_template>
            <first_frame> *  N  R  K  K  K  G  I  Y  S  L  S  P  W  K  *  L  Q  A  Q  Q  N  S  N  G  S  L  H  F  F  C  F  L  L  A  L  P  L  D  K  Y  K  M  :  V  R  *  L  T  V  I  L  R  P  R  R  Q  V  V  S  L  P  A  M  D  S  P  T  V  H  L  K  S  P  A  G  N  Q  T  A  P  *  S  *  *  N  P  G  K  N  R  V  E  *  S  S  S  Y  H  K  V  D  T  Q  F  G  L  E  T  T  P  R  *  A  K  S  S  K  *  R  K  V  P  F  T  R  S  L  S  A  R  L  A  L  A  L  S  *  S  H  S  T  F  Q  F  L  L  P  H  R  P  L  I  F  R  L  C  I  V  F  R  A  G  I  L  T  R  G  P  F  R  L  K  K  M  M  C  G  S  F  L  Q  I  L  A  W  K  M  T  P  L  V  D  P  L  L  M  I  L  L </first_frame>
            <second_frame>  R  I  E  K  K  R  E  F  I  L  C  R  H  G  N  S  F  K  L  N  K  I  Q  M  G  H  C  I  S  S  A  S  C  L  L  C  R  W  T  S  T  R  W :   S  V  S  *  R  *  F  *  D  P  A  V  R  W  F  L  F  R  R  W  I  L  R  R  S  I  *  N  P  Q  L  E  I  K  R  H  R  R  V  S  R  I  R  A  K  T  G  W  N  D  P  H  R  T  T  R  *  T  R  S  S  A  W  K  R  R  R  D  K  P  R  A  Q  S  R  E  R  F  H  L  L  D  H  F  Q  R  G  S  H  L  R  S  A  R  V  T  Q  R  F  S  S  S  C  L  T  D  H  *  S  S  D  S  V  *  C  S  G  L  G  F  L  R  V  G  L  S  G  *  R  R  *  C  A  G  R  F  Y  K  S  W  H  G  R  *  P  H  L  W  T  H  Y  *  *  Y  C   </second_frame>
            <third_frame>   E  *  K  K  K  G  N  L  F  F  V  A  M  E  I  A  S  S  S  T  K  F  K  W  V  T  A  F  L  L  L  L  A  C  S  A  A  G  Q  V  Q  D   : G  P  L  V  N  G  N  F  E  T  P  P  S  G  G  F  S  S  G  D  G  F  S  D  G  P  S  E  I  P  S  W  K  S  N  G  T  V  E  L  V  E  S  G  Q  K  Q  G  G  M  I  L  I  V  P  Q  G  R  H  A  V  R  L  G  N  D  A  E  I  S  Q  E  L  K  V  E  K  G  S  I  Y  S  I  T  F  S  A  A  R  T  C  A  Q  L  E  S  L  N  V  S  V  P  P  A  S  Q  T  I  D  L  Q  T  L  Y  S  V  Q  G  W  D  S  Y  A  W  A  F  Q  A  E  E  D  D  V  R  V  V  F  T  N  P  G  M  E  D  D  P  T  C  G  P  I  I  D  D  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0185P07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60529" stop="60649"/>
                    <exon start="61697" stop="62163"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKGNLFFVAMEIASSSTKFKWVTAFLLLLACSAAGQVQDGPLVNGNFETPPSGGFSSGDGFSDGPSEIPSWKSNGTVELVESGQKQGGMILIVPQGRHAVRLGNDAEISQELKVEKGSIYSITFSAARTCAQLESLNVSVPPASQTIDLQTLYSVQGWDSYAWAFQAEEDDVRVVFTNPGMEDDPTCGPIIDDIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 112 chains have been computed
$ 
$ memory statistics:
$ 241568 bytes spliced alignments in total
$ 44 spliced alignments have been stored
$ 5490 bytes was the average size of a spliced alignment
$ 13376 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1910 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 134 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:44:00
-->
