<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:51:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541352" ref_strand="+" ref_description="SGN-E541352 [TUS-62-B16](-)">
      <seq>ctggatttggcttcagtgccatggaagttgagaccctagttcgctaccagcttccagttgtggttatagtcttcaataatggcggagtttatggtggtgacagaaggaaccccgaagaaattactggaccttataaagaagatccagcacccacatcttttgttcctggtgcatcgtatcatcttctaattgaagcctttggaggaaaaggataccttgttggaacacctgatgaacttaaatctgcacttacagaatctttttttgctaggaagcctgctgttattaatgtgacaatcgatccttatgctggtgctgaaagtgggagaatgcagcacaaaaactgaggttgcgggtctctgattatttatgtatggatatgcttgctgaagttcagttcttgtccaccattcgtgcacaaaagaagatacaagaagaaagattgttgttgtgccacggtattaatttgtcatcggtggaggaaaataatagcgaagggaataggttaagtgattgtctctcctttgtatcgtcacagatagggtatggtgttgaatttacagttgatagtgatgaatgaattttcgtatacatagtaaatgaaaataatgtatttgcaacaaatacttatccttgtggttttcttagtttctcaagtgttctattgagttccttgttaaaaaaaaaaaaaaaaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="41990" stop="39309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41690" g_stop="41659" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41658" i_stop="40256" i_length="1403">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40255" g_stop="39610" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="678" r_length="646" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="709"/>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E541352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41690" e_stop="41659"/>
          <exon e_start="40255" e_stop="39610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTTGGCTTCAGTGCCATGGAAGTTGAGGTCTGTTGTCTTTCTTTATTTCATGTGTTTTTCCCCACTATATACTCTATTAATAGGATCTAACTGACTTTAGTTGTTACCTAGAATAGCATTGCTGATCTTCGACATATGATGCCTTTCTTTCTTGGTTATCAGAGAACTTCTTCATTATCTTGTTTCTTGTTAGTCTGTCTAATGTCTTATTTAGTAAATCATTTACGTTTGCGAGTAATAATTAAGCCCAATTGAATAGATTTTTCTCATATAATAGAGTTGAACTGATCAGTGCTTAAAAGCTTAGGCTCTGATGAAGCTCAAAATTATATTTTTTCTGCTTCTTAGAGAACTGCTGTAGGCATTTAATGTCCTCCCTCATTATTGTGGATTACGGATTCTTATATAGTTTCATTACTGGCAATTTCAGGGGTTAGTAAGATTTAATTGTCAACATCAGGTTCTATCTTTCTGAGTAGTTCATTGGTTTTCAGGAATGATATCTTAGTGGAATAACTGTAATGATATCTGAGTAGTTCACTAATATCTCTCTTATGGAATTTCTGACACATCTTAAACTATAATGAACCACTAAATACAAATATGTACTGTACCATATCTTGCAGACTTATGGGGTTGAATATTCATAGGTCCTCCGCTGCCACATTAAGTTAAAACCCAACTCATTTTTTGATCACATGATGTGGAGTGGATTTGAATGCCCTTAATCTGAATTGCTTTCCAGCTCAGCTGACTGGTTGAGAAGAGAGTCCTTAGAAAGTGATGCCTTGACCTACTGGATGCGGTGTAATGCAGTGGTGTCATGACTCATAAGTTAGTAAGATCACTTAAAACTTGTGATACAAAATCAGGGAACTTAACTCGACGTCATAAGTCAGTACAATTACTTTCCATATACTAGAAAGCTGCTCAACAGGTCATTGAATCAACCAACAGTTCATCAGCAGTTATAATGACTGGAACCTAGGCCCCTTACCTTGATGTGCTGGTTCTTGATGTTGGGCCCATAATCCCTCCTACTACTAGTACCCATCTCGTGCTATACCCTACTTACCGGTTCTGGTGTGATTCATGATTTTCTTATCTATTTGTTTACCCGGTGGTGTCACTCGTACAGCTTTTTTCTCCTGTTGCCTTTGGTGGTCTTCTCATACAATTATGAGGATTTATTGGTCTTCGTTGCTTAAGGTTACCATGATCTCTTTCACTGTTTGTTTTTAAATATTATAGAATTGATCACTCCTTACAATGAAAAATTATGCTCGTGAAGGCATTCCTTCTACTTCTAAGTTACATTTGTTATGTAGAGTAACTTACCTGTGCCACCGTTGACTCCCATATATTTATTGGTTCACTTTCTTTTGAAGTTCAATTTACACTCCTAATTCAGAGTAATTTATGTATTGCAGACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATAGTAAATGAAAATAATGTATTTGCAACAAATACTTATCCTTGTGGTTTTCTTAGTTTCTCAAGTGTTCTATTGAGTTCCTTGTT</genome_strand>
        <mrna_strand>CTGGATTTGGCTTCAGTGCCATGGAAGTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTTTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATAGTAAATGAAAATAATGTATTTGCAACAAATACTTATCCTTGTGGTTTTCTTAGTTTCTCAAGTGTTCTATTGAGTTCCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541355" ref_strand="+" ref_description="SGN-E541355 [TUS-62-B16]">
      <seq>ctggatttggcttcagtgccatggaagttgagaccctagttcgctaccagcttccagttgtggttatagtcttcaataatggcggagtttatggtggtgacagaaggaaccccgaagaaattactggaccttataaagaagatccagcacccacatcttttgttcctggtgcatcgtatcatcttctaattgaagcctttggaggaaaaggataccttgttggaacacctgatgaacttaaatctgcacttacagaatctttttctgctaggaagcctgctgttattaatgtgacaatcgatccttatgctggtgctgaaagtgggagaatgcagcacaaaaactgaggttgcgggtctctgattatttatgtatggatatgcttgctgaagttcagttcttgtccaccattcgtgcacaaaagaagatacaagaagaaagattgttgttgtgccacggtattaatttgtcatcggtggaggaaaataatagcgaagggaataggttaagtgattgtctctcctttgtatcgtcacagatagggtatggtgttgaatttacagttgatagtgatgaatgaattttcgtatacatagtaaatgaaaataatgtatttgcaacaaatacttatccttgtggttttcttagtttctcaagtgttctattgagttccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="41990" stop="39311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41690" g_stop="41659" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41658" i_stop="40256" i_length="1403">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40255" g_stop="39611" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="677" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E541355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41690" e_stop="41659"/>
          <exon e_start="40255" e_stop="39611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTTGGCTTCAGTGCCATGGAAGTTGAGGTCTGTTGTCTTTCTTTATTTCATGTGTTTTTCCCCACTATATACTCTATTAATAGGATCTAACTGACTTTAGTTGTTACCTAGAATAGCATTGCTGATCTTCGACATATGATGCCTTTCTTTCTTGGTTATCAGAGAACTTCTTCATTATCTTGTTTCTTGTTAGTCTGTCTAATGTCTTATTTAGTAAATCATTTACGTTTGCGAGTAATAATTAAGCCCAATTGAATAGATTTTTCTCATATAATAGAGTTGAACTGATCAGTGCTTAAAAGCTTAGGCTCTGATGAAGCTCAAAATTATATTTTTTCTGCTTCTTAGAGAACTGCTGTAGGCATTTAATGTCCTCCCTCATTATTGTGGATTACGGATTCTTATATAGTTTCATTACTGGCAATTTCAGGGGTTAGTAAGATTTAATTGTCAACATCAGGTTCTATCTTTCTGAGTAGTTCATTGGTTTTCAGGAATGATATCTTAGTGGAATAACTGTAATGATATCTGAGTAGTTCACTAATATCTCTCTTATGGAATTTCTGACACATCTTAAACTATAATGAACCACTAAATACAAATATGTACTGTACCATATCTTGCAGACTTATGGGGTTGAATATTCATAGGTCCTCCGCTGCCACATTAAGTTAAAACCCAACTCATTTTTTGATCACATGATGTGGAGTGGATTTGAATGCCCTTAATCTGAATTGCTTTCCAGCTCAGCTGACTGGTTGAGAAGAGAGTCCTTAGAAAGTGATGCCTTGACCTACTGGATGCGGTGTAATGCAGTGGTGTCATGACTCATAAGTTAGTAAGATCACTTAAAACTTGTGATACAAAATCAGGGAACTTAACTCGACGTCATAAGTCAGTACAATTACTTTCCATATACTAGAAAGCTGCTCAACAGGTCATTGAATCAACCAACAGTTCATCAGCAGTTATAATGACTGGAACCTAGGCCCCTTACCTTGATGTGCTGGTTCTTGATGTTGGGCCCATAATCCCTCCTACTACTAGTACCCATCTCGTGCTATACCCTACTTACCGGTTCTGGTGTGATTCATGATTTTCTTATCTATTTGTTTACCCGGTGGTGTCACTCGTACAGCTTTTTTCTCCTGTTGCCTTTGGTGGTCTTCTCATACAATTATGAGGATTTATTGGTCTTCGTTGCTTAAGGTTACCATGATCTCTTTCACTGTTTGTTTTTAAATATTATAGAATTGATCACTCCTTACAATGAAAAATTATGCTCGTGAAGGCATTCCTTCTACTTCTAAGTTACATTTGTTATGTAGAGTAACTTACCTGTGCCACCGTTGACTCCCATATATTTATTGGTTCACTTTCTTTTGAAGTTCAATTTACACTCCTAATTCAGAGTAATTTATGTATTGCAGACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATAGTAAATGAAAATAATGTATTTGCAACAAATACTTATCCTTGTGGTTTTCTTAGTTTCTCAAGTGTTCTATTGAGTTCCTTGT</genome_strand>
        <mrna_strand>CTGGATTTGGCTTCAGTGCCATGGAAGTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATAGTAAATGAAAATAATGTATTTGCAACAAATACTTATCCTTGTGGTTTTCTTAGTTTCTCAAGTGTTCTATTGAGTTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353052" ref_strand="+" ref_description="SGN-E353052 [cTOS-14-H5]">
      <seq>tccaccattcgtgcacaaaagaagatacaagaagaaagattgttgttgtgccacggtattaatttgtcatcggtggaggaaaataatagcgaagggaataggttaagtgattgtctctcctttgtatcgtcacagatagggtatggtgttgaatttacagttgatagtgatgaatgaattttcgtatacatagtaaatgaaaataatgtatttgcaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="40184" stop="39362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39884" g_stop="39657" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E353052" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39884" e_stop="39657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATAGTAAATGAAAATAATGTATTTGCAACAAATACTTAT</genome_strand>
        <mrna_strand>TCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATAGTAAATGAAAATAATGTATTTGCAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221275" ref_strand="+" ref_description="SGN-E221275 [cLEL-22-G8](-)">
      <seq>tggtgcatcgtatcatcttctaattaaagcctttggaggaaaaggataccttgttggaacacctgatgaacttaaatctgcacttacagaatctttttctgctagaaagcctgctgttattaatgtgacaatcgatccttatgctggtgctgaaagtgggagaatgcagcacaaaaactgaggttgcgggtctctgattatttatgtatggatatgcttgctgaagttcagttcttgtccaccattcgtgcacaaaagaagatacaagaagaaagattgttgttgtgccacggtattaatttgtcatcggtggaggaaaataataacgaagggaataaggttaagtgattgtctctcctttgtatcgtcacagatagggtatggtgttgaatttacagttgatagtgatgaatgaattttcgtatacatagtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="40421" stop="39379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40121" g_stop="39693" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="452"/>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E221275" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40121" e_stop="39693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAAT-AGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATA</genome_strand>
        <mrna_strand>TGGTGCATCGTATCATCTTCTAATTAAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGAAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAACGAAGGGAATAAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221147" ref_strand="+" ref_description="SGN-E221147 [cLEL-22-G8](-)">
      <seq>catcgtatcatcttctattgaagccttggaggaaaaggataccttgtggaacacctgataacttaaatctgcacttacagaatctttttctgctaggaagcctgctgttattaatgtgacaatcgagtccttatgctggtgctgaaagtgggagaatgcagcacaaaaactgaggttgcgggtctctgattatttatgtatggatatgcttgctgaagttcagttcttgtccaccattcgtgcccaaaagaagatacaagaagaaagattgttgttgtgccccggtattaatttgtcatcggtggaggaaaataatagcgaagggaataggttaagtgattgtctctcctttgtatcgtcacagatagggtatggtgttgaatttacagttgatagtgatgaatgaattttcgtatacatagtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="40416" stop="39379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40116" g_stop="39693" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="443"/>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E221147" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40116" e_stop="39693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGA-TCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATA</genome_strand>
        <mrna_strand>CATCGTATCATCTTCT-ATTGAAGCC-TTGGAGGAAAAGGATACCTTG-TGGAACACCTGAT-AACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGAGTCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCCCAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCCCGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295867" ref_strand="+" ref_description="SGN-E295867 [cLET-27-G5]">
      <seq>tggatttggcttcagtgccatggaagttgagaccctagttcgctaccagcttccagttgtggttatagtcttcaataatggcggagtttatggtggtgacagaaggaaccccgaagaaattactggaccttataaagaagatccagcacccacatcttttgttcctggtgcatcgtatcatcttctaattgaagcctttggaggaaaaggataccttgttggaacacctgatgaacttaaatctgcacttacagaatctttttctgctaggaagcctgctgttattaatgtgacaatcgatccttatgctggtgctgaaagtgggagaatgcagcacaaaaactgaggttgcgggtctctgattatttatgtatggatatgcttgctgaagttcagttcttgtccaccattcgtgcacaaaagaagatacaagaagaaagattgttgttgtgccacggtattaatttgtcatcggtggaggaaaataatagcgaagggaataggttaagtgattgtctctcctttgtatcggcacagatagggtatggtgttgaatttacagttgatagtgatgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="41989" stop="39406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41689" g_stop="41659" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41658" i_stop="40256" i_length="1403">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40255" g_stop="39706" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="581" r_length="550" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E295867" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41689" e_stop="41659"/>
          <exon e_start="40255" e_stop="39706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTGGCTTCAGTGCCATGGAAGTTGAGGTCTGTTGTCTTTCTTTATTTCATGTGTTTTTCCCCACTATATACTCTATTAATAGGATCTAACTGACTTTAGTTGTTACCTAGAATAGCATTGCTGATCTTCGACATATGATGCCTTTCTTTCTTGGTTATCAGAGAACTTCTTCATTATCTTGTTTCTTGTTAGTCTGTCTAATGTCTTATTTAGTAAATCATTTACGTTTGCGAGTAATAATTAAGCCCAATTGAATAGATTTTTCTCATATAATAGAGTTGAACTGATCAGTGCTTAAAAGCTTAGGCTCTGATGAAGCTCAAAATTATATTTTTTCTGCTTCTTAGAGAACTGCTGTAGGCATTTAATGTCCTCCCTCATTATTGTGGATTACGGATTCTTATATAGTTTCATTACTGGCAATTTCAGGGGTTAGTAAGATTTAATTGTCAACATCAGGTTCTATCTTTCTGAGTAGTTCATTGGTTTTCAGGAATGATATCTTAGTGGAATAACTGTAATGATATCTGAGTAGTTCACTAATATCTCTCTTATGGAATTTCTGACACATCTTAAACTATAATGAACCACTAAATACAAATATGTACTGTACCATATCTTGCAGACTTATGGGGTTGAATATTCATAGGTCCTCCGCTGCCACATTAAGTTAAAACCCAACTCATTTTTTGATCACATGATGTGGAGTGGATTTGAATGCCCTTAATCTGAATTGCTTTCCAGCTCAGCTGACTGGTTGAGAAGAGAGTCCTTAGAAAGTGATGCCTTGACCTACTGGATGCGGTGTAATGCAGTGGTGTCATGACTCATAAGTTAGTAAGATCACTTAAAACTTGTGATACAAAATCAGGGAACTTAACTCGACGTCATAAGTCAGTACAATTACTTTCCATATACTAGAAAGCTGCTCAACAGGTCATTGAATCAACCAACAGTTCATCAGCAGTTATAATGACTGGAACCTAGGCCCCTTACCTTGATGTGCTGGTTCTTGATGTTGGGCCCATAATCCCTCCTACTACTAGTACCCATCTCGTGCTATACCCTACTTACCGGTTCTGGTGTGATTCATGATTTTCTTATCTATTTGTTTACCCGGTGGTGTCACTCGTACAGCTTTTTTCTCCTGTTGCCTTTGGTGGTCTTCTCATACAATTATGAGGATTTATTGGTCTTCGTTGCTTAAGGTTACCATGATCTCTTTCACTGTTTGTTTTTAAATATTATAGAATTGATCACTCCTTACAATGAAAAATTATGCTCGTGAAGGCATTCCTTCTACTTCTAAGTTACATTTGTTATGTAGAGTAACTTACCTGTGCCACCGTTGACTCCCATATATTTATTGGTTCACTTTCTTTTGAAGTTCAATTTACACTCCTAATTCAGAGTAATTTATGTATTGCAGACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAAT</genome_strand>
        <mrna_strand>TGGATTTGGCTTCAGTGCCATGGAAGTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGGCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257678" ref_strand="+" ref_description="SGN-E257678 [cLEG-39-A16]">
      <seq>aactgaacttcagcgagcgtatccatacataaataatcagagacccgcaacctcagtttttgtgctgcattctcccactttcagcaccagcataaggatcgattgtcacattaataacagcaggcttcctagcagaaaaagattctgtaagtgcagatttaagttcatcaggtgttccaacaaggtatccttttcctccaaaggcttcaattagaagatgatacgatgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="39589" stop="40420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39889" g_stop="40120" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E257678" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39889" e_stop="40120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAACTTCAGCAAGCATATCCATACATAAATAATCAGAGACCCGCAACCTCAGTTTTTGTGCTGCATTCTCCCACTTTCAGCACCAGCATAAGGATCGATTGTCACATTAATAACAGCAGGCTTCCTAGCAGAAAAAGATTCTGTAAGTGCAGATTTAAGTTCATCAGGTGTTCCAACAAGGTATCCTTTTCCTCCAAAGGCTTCAATTAGAAGATGATACGATGCACC</genome_strand>
        <mrna_strand>AACTGAACTTCAGCGAGCGTATCCATACATAAATAATCAGAGACCCGCAACCTCAGTTTTTGTGCTGCATTCTCCCACTTTCAGCACCAGCATAAGGATCGATTGTCACATTAATAACAGCAGGCTTCCTAGCAGAAAAAGATTCTGTAAGTGCAGATTTAAGTTCATCAGGTGTTCCAACAAGGTATCCTTTTCCTCCAAAGGCTTCAATTAGAAGATGATACGATGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704414" ref_strand="+" ref_description="SGN-E704414 [FA24AH09]">
      <seq>gatagttggcgcaaggcttaattggcttttgcatttcggagagccaccaaagtggtctaaggatgtgaagtttatcttagttgatgtagataaggaggagattgagcttaggaaaccatgtttagggttggttggtgatgctactaaggttgttgagatgatacacaaggagattaaggatgaccctttttgtttagggaagtctcatccttgggttgaggcattatcaaagaagagcaaggaaaatgttttgaaaatggaggcacaactggcaaaggacgtcgtgccatttaattttatgacaccaatgagaattattagagatgcaatactgcaattgggcagtcctgctccaattgttgtctccgaaggagccaacactatggatgtggggcgatcagtattagttcagaccgagccaaggacccggttggatgcagggacgtgggggacaatgggagttggtctggggtactgcattgcagctgctgttgcttcacctgaaaggcttgtagtagctgttgaaggggactctggatttggcttcagtgccatggaagttgagaccctagttcgctaccagcttccagttgtggttatagtcttcaataatggcggagtttatggtggtgacagaaggaaccccgaagaaattactggaccttataaagaagatccagcacccacatcttttgttcctggtgcatcgtatcatcttctaattgaagcctttggaggaaaaggataccttgttggaacacctgatgaacttaaatctgcacttacagaatctttttctgctangaagcctgctgttattaatgtgaccatcgatccttatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="42523" stop="39676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42223" g_stop="41659" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41658" i_stop="40256" i_length="1403">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40255" g_stop="39976" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="845" r_length="280" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E704414" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42223" e_stop="41659"/>
          <exon e_start="40255" e_stop="39976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTTGGCGCAAGGCTTAATTGGCTTTTGCATTTCGGAGAGCCACCAAAGTGGTCTAAGGATGTGAAGTTTATCTTAGTTGATGTAGATAAGGAGGAGATTGAGCTTAGGAAACCATGTTTAGGGTTGGTTGGTGATGCTACTAAGGTTGTTGAGATGATACACAAGGAGATTAAGGATGACCCTTTTTGTTTAGGGAAGTCTCATCCTTGGGTTGAGGCATTATCAAAGAAGAGCAAGGAAAATGTTTTGAAAATGGAGGCACAACTGGCAAAGGACGTCGTGCCATTTAATTTTATGACACCAATGAGAATTATTAGAGATGCAATACTGCAATTGGGCAGTCCTGCTCCAATTGTTGTCTCCGAAGGAGCCAACACTATGGATGTGGGGCGATCAGTATTAGTTCAGACCGAGCCAAGGACCCGGTTGGATGCAGGGACGTGGGGGACAATGGGAGTTGGTCTGGGGTACTGCATTGCAGCTGCTGTTGCTTCACCTGAAAGGCTTGTAGTAGCTGTTGAAGGGGACTCTGGATTTGGCTTCAGTGCCATGGAAGTTGAGGTCTGTTGTCTTTCTTTATTTCATGTGTTTTTCCCCACTATATACTCTATTAATAGGATCTAACTGACTTTAGTTGTTACCTAGAATAGCATTGCTGATCTTCGACATATGATGCCTTTCTTTCTTGGTTATCAGAGAACTTCTTCATTATCTTGTTTCTTGTTAGTCTGTCTAATGTCTTATTTAGTAAATCATTTACGTTTGCGAGTAATAATTAAGCCCAATTGAATAGATTTTTCTCATATAATAGAGTTGAACTGATCAGTGCTTAAAAGCTTAGGCTCTGATGAAGCTCAAAATTATATTTTTTCTGCTTCTTAGAGAACTGCTGTAGGCATTTAATGTCCTCCCTCATTATTGTGGATTACGGATTCTTATATAGTTTCATTACTGGCAATTTCAGGGGTTAGTAAGATTTAATTGTCAACATCAGGTTCTATCTTTCTGAGTAGTTCATTGGTTTTCAGGAATGATATCTTAGTGGAATAACTGTAATGATATCTGAGTAGTTCACTAATATCTCTCTTATGGAATTTCTGACACATCTTAAACTATAATGAACCACTAAATACAAATATGTACTGTACCATATCTTGCAGACTTATGGGGTTGAATATTCATAGGTCCTCCGCTGCCACATTAAGTTAAAACCCAACTCATTTTTTGATCACATGATGTGGAGTGGATTTGAATGCCCTTAATCTGAATTGCTTTCCAGCTCAGCTGACTGGTTGAGAAGAGAGTCCTTAGAAAGTGATGCCTTGACCTACTGGATGCGGTGTAATGCAGTGGTGTCATGACTCATAAGTTAGTAAGATCACTTAAAACTTGTGATACAAAATCAGGGAACTTAACTCGACGTCATAAGTCAGTACAATTACTTTCCATATACTAGAAAGCTGCTCAACAGGTCATTGAATCAACCAACAGTTCATCAGCAGTTATAATGACTGGAACCTAGGCCCCTTACCTTGATGTGCTGGTTCTTGATGTTGGGCCCATAATCCCTCCTACTACTAGTACCCATCTCGTGCTATACCCTACTTACCGGTTCTGGTGTGATTCATGATTTTCTTATCTATTTGTTTACCCGGTGGTGTCACTCGTACAGCTTTTTTCTCCTGTTGCCTTTGGTGGTCTTCTCATACAATTATGAGGATTTATTGGTCTTCGTTGCTTAAGGTTACCATGATCTCTTTCACTGTTTGTTTTTAAATATTATAGAATTGATCACTCCTTACAATGAAAAATTATGCTCGTGAAGGCATTCCTTCTACTTCTAAGTTACATTTGTTATGTAGAGTAACTTACCTGTGCCACCGTTGACTCCCATATATTTATTGGTTCACTTTCTTTTGAAGTTCAATTTACACTCCTAATTCAGAGTAATTTATGTATTGCAGACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTG</genome_strand>
        <mrna_strand>GATAGTTGGCGCAAGGCTTAATTGGCTTTTGCATTTCGGAGAGCCACCAAAGTGGTCTAAGGATGTGAAGTTTATCTTAGTTGATGTAGATAAGGAGGAGATTGAGCTTAGGAAACCATGTTTAGGGTTGGTTGGTGATGCTACTAAGGTTGTTGAGATGATACACAAGGAGATTAAGGATGACCCTTTTTGTTTAGGGAAGTCTCATCCTTGGGTTGAGGCATTATCAAAGAAGAGCAAGGAAAATGTTTTGAAAATGGAGGCACAACTGGCAAAGGACGTCGTGCCATTTAATTTTATGACACCAATGAGAATTATTAGAGATGCAATACTGCAATTGGGCAGTCCTGCTCCAATTGTTGTCTCCGAAGGAGCCAACACTATGGATGTGGGGCGATCAGTATTAGTTCAGACCGAGCCAAGGACCCGGTTGGATGCAGGGACGTGGGGGACAATGGGAGTTGGTCTGGGGTACTGCATTGCAGCTGCTGTTGCTTCACCTGAAAGGCTTGTAGTAGCTGTTGAAGGGGACTCTGGATTTGGCTTCAGTGCCATGGAAGTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTANGAAGCCTGCTGTTATTAATGTGACCATCGATCCTTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260099" ref_strand="+" ref_description="SGN-E260099 [cLEG-52-N18]">
      <seq>gagattgagcttaggaaaccatgtttagggttggttggtgatgctactaaggttgttgagatgatacacaaggagattaaggatgaccctttttgtttagggaagtctcatccttgggttgaggcattatcaaagaagagcaaggaaaatgttttgaaaatggaggcacaactggcaaaggacgtcgtgccatttaattttatgacaccaatgagaattattagagatgcaatactgcaattgggcagtcctgctccaattgttgtctccgaaggagccaacactatggatgtggggcgatcagtattagttcagaccgagccaaggacccggttggatgcagggacgtgggggacaatgggagttggtctggggtactgcattgcagctgctgttgcttcacctgaaaggcttgtagtagctgttgaaggggactctggatttggcttcagtgccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="42426" stop="41366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42126" g_stop="41666" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E260099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42126" e_stop="41666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGAGCTTAGGAAACCATGTTTAGGGTTGGTTGGTGATGCTACTAAGGTTGTTGAGATGATACACAAGGAGATTAAGGATGACCCTTTTTGTTTAGGGAAGTCTCATCCTTGGGTTGAGGCATTATCAAAGAAGAGCAAGGAAAATGTTTTGAAAATGGAGGCACAACTGGCAAAGGACGTCGTGCCATTTAATTTTATGACACCAATGAGAATTATTAGAGATGCAATACTGCAATTGGGCAGTCCTGCTCCAATTGTTGTCTCCGAAGGAGCCAACACTATGGATGTGGGGCGATCAGTATTAGTTCAGACCGAGCCAAGGACCCGGTTGGATGCAGGGACGTGGGGGACAATGGGAGTTGGTCTGGGGTACTGCATTGCAGCTGCTGTTGCTTCACCTGAAAGGCTTGTAGTAGCTGTTGAAGGGGACTCTGGATTTGGCTTCAGTGCCATGGA</genome_strand>
        <mrna_strand>GAGATTGAGCTTAGGAAACCATGTTTAGGGTTGGTTGGTGATGCTACTAAGGTTGTTGAGATGATACACAAGGAGATTAAGGATGACCCTTTTTGTTTAGGGAAGTCTCATCCTTGGGTTGAGGCATTATCAAAGAAGAGCAAGGAAAATGTTTTGAAAATGGAGGCACAACTGGCAAAGGACGTCGTGCCATTTAATTTTATGACACCAATGAGAATTATTAGAGATGCAATACTGCAATTGGGCAGTCCTGCTCCAATTGTTGTCTCCGAAGGAGCCAACACTATGGATGTGGGGCGATCAGTATTAGTTCAGACCGAGCCAAGGACCCGGTTGGATGCAGGGACGTGGGGGACAATGGGAGTTGGTCTGGGGTACTGCATTGCAGCTGCTGTTGCTTCACCTGAAAGGCTTGTAGTAGCTGTTGAAGGGGACTCTGGATTTGGCTTCAGTGCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699784" ref_strand="+" ref_description="SGN-E699784 [FA11AH01]">
      <seq>actatccatcactgaaaagagtcctctgtttctaaaactcacttaaaatgtctgattccaatcaccaaaccctatctactgtcgacggaaacactttcgttgccatgtgccttgcacgtgccggcgtcgaccggatgttcggggttgtcgggatacccgttacttcccttgcgaaccggtcggtcggactcggtatccggtttattgctttccacaatgaacaatctgccggttacgctgcttctgcttatggttatcttaccggtcgacccggaattcttctaaccgtctctggtccaggttgcgttcatggcctcgctgggctttccaatgcaaccgttaatacctggcccatggttttgatttctgggtcatctgatcagaaagagatgggtcgcggcgattttcaagaattagatcaaattgaggctgtgaaacccttctctaagtactcagctaaagcaactgatataacgaaaataccaagctgtgttttcagtgttttggattgggcagtctctggcaggccaggtggttgttatttggatcttcctactgatgtgcttcatcagacaattagtgacactgaagcacagaaattgatcgatgatgctgagagttgcaggaataaagagctcattgctaaacccattgttcaacattcagaaattgaaaaggcggctgctttgttgaggaaagcggagaggcctttgattgtgtttggaaaaggggctgcattttctagagctgnaaatgctttgaagaatttagttgagcgcactggaataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="43412" stop="42025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43115" g_stop="42325" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E699784" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43115" e_stop="42325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCATCACTGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATATAACGAAAATACCAAGCTGTGTTTTCAGTGTTTTGGATTGGGCAGTCTCTGGCAGGCCAGGTGGTTGTTATTTGGATCTTCCTACTGATGTGCTTCATCAGACAATTAGTGACACTGAAGCACAGAAATTGATCGATGATGCTGAGAGTTGCAGGAATAAAGAGCTCATTGCTAAACCCATTGTTCAACATTCAGAAATTGAAAAGGCGGCTGCTTTGTTGAGGAAAGCGGAGAGGCCTTTGATTGTGTTTGGAAAAGGGGCTGCATTTTCTAGAGCTGAAAATGCTTTGAAGAATTTAGTTGAGCGCACTGGAATACCC</genome_strand>
        <mrna_strand>ACTATCCATCACTGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATATAACGAAAATACCAAGCTGTGTTTTCAGTGTTTTGGATTGGGCAGTCTCTGGCAGGCCAGGTGGTTGTTATTTGGATCTTCCTACTGATGTGCTTCATCAGACAATTAGTGACACTGAAGCACAGAAATTGATCGATGATGCTGAGAGTTGCAGGAATAAAGAGCTCATTGCTAAACCCATTGTTCAACATTCAGAAATTGAAAAGGCGGCTGCTTTGTTGAGGAAAGCGGAGAGGCCTTTGATTGTGTTTGGAAAAGGGGCTGCATTTTCTAGAGCTGNAAATGCTTTGAAGAATTTAGTTGAGCGCACTGGAATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253126" ref_strand="+" ref_description="SGN-E253126 [cLEG-25-L22]">
      <seq>tgaaaagagtcctctgtttctaaaactcacttaaaatgtctgattccaatcaccaaaccctatctactgtcgacggaaacactttcgttgccatgtgccttgcacgtgccggcgtcgaccggatgttcggggttgtcgggatacccgttacttcccttgcgaaccggtcggtcggactcggtatccggtttattgctttccacaatgaacaatctgccggttacgctgcttctgcttatggttatcttaccggtcgacccggaattcttctaaccgtctctggtccaggttgcgttcatggcctcgctgggctttccaatgcaaccgttaatacctggcccatggttttgatttctgggtcatctgatcagaaagagatgggtcgcggcgattttcaagaattagatcaaattgaggctgtgaaacccttctctaagtactcagctaaagcaactgatataacgaaaataccaagctgtgttttcagtgttttggattgggcagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="43403" stop="42296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43103" g_stop="42596" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E253126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43103" e_stop="42596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATATAACGAAAATACCAAGCTGTGTTTTCAGTGTTTTGGATTGGGCAGTCTC</genome_strand>
        <mrna_strand>TGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATATAACGAAAATACCAAGCTGTGTTTTCAGTGTTTTGGATTGGGCAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275250" ref_strand="+" ref_description="SGN-E275250 [cLEN-9-I4]">
      <seq>ttctctgtaaaatccatcactgaaaagagtcctctgtttctaaaactcacttaaaatgtctgattccaatcaccaaaccctatctactgtcgacggaaacactttcgttgccatgtgccttgcacgtgccggcgtcgaccggatgttcggggttgtcgggatacccgttacttcccttgcgaaccggtcggtcggactcggtatccggtttattgctttccacaatgaacaatctgccggttacgctgcttctgcttatggttatcttaccggtcgacccggaattcttctaaccgtctctggtccaggttgcgttcatggcctcgctgggctttccaatgcaaccgttaatacctggcccatggttttgatttctgggtcatctgatcagaaagagatgggtcgcggcgattttcaagaattagatcaaattgaggctgtgaaacccttctctaagtactcagctaaagcaactgatataacgaaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="43423" stop="42333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43123" g_stop="42633" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E275250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43123" e_stop="42633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGTAAAATCCATCACTGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATATAACGAAAATAC</genome_strand>
        <mrna_strand>TTCTCTGTAAAATCCATCACTGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATATAACGAAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319387" ref_strand="+" ref_description="SGN-E319387 [cTOB-15-I20]">
      <seq>ttctctgtaaaatccatcactgaaaagagtcctctgtttctaaaactcacttaaaatgtctgattccaatcaccaaaccctatctactgtcgacggaaacactttcgttgccatgtgccttgcacgtgccggcgtcgaccggatgttcggggttgtcgggatacccgttacttcccttgcgaaccggtcggtcggactcggtatccggtttattgctttccacaatgaacaatctgccggttacgctgcttctgcttatggttatcttaccggtcgacccggaattcttctaaccgtctctggtccaggttgcgttcatggcctcgctgggctttccaatgcaaccgttaatacctggcccatggttttgatttctgggtcatctgatcagaaagagatgggtcgcggcgattttcaagaattagatcaaattgaggctgtgaaacccttctctaagtactcagctaaagcaactgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="43423" stop="42345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43123" g_stop="42645" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E319387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43123" e_stop="42645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGTAAAATCCATCACTGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATA</genome_strand>
        <mrna_strand>TTCTCTGTAAAATCCATCACTGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275111" ref_strand="+" ref_description="SGN-E275111 [cLEN-9-I14]">
      <seq>acttaaaaagtctgattccaatcaccaaaccctatctactgtcgacggaaacacttttgttgccatgtgccttgcacgtgccggcgtcgaccggatgttcggggttgacgggatacccgttacttcccttgcgaaccggtcggtcggactcggtatccggtttattgctttccacaatgaacaatctgccggttacgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="43375" stop="42576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43075" g_stop="42876" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E275111" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43075" e_stop="42876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTG</genome_strand>
        <mrna_strand>ACTTAAAAAGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTTGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGACGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344602" ref_strand="+" ref_description="SGN-E344602 [cTOF-14-E10]">
      <seq>gttgttctaaccataaccagttgccttttctgcttgaaaattattggctatggcggtgagaacaagtctgtctctgcgacggagattttagattccaaacttttcttgtgctggttcaaacgccgaccagagttacagctttgatacaatatgagtgcggtgaacattacaaatgtcgccgtattagacaatccggcgtcgttcttgtccccgttccagtttgaaatatcctacgagtgtgtcactcctctccaagatgatttggaatggaagctcatttatgtgggatctgccgaggatgagacatatgaccaagttttagaaagcgttcttgttggccctgtaaatgtaggaaattaccgctttgtcttgcaggcggaccctccagatcctttgaaaattcgtgaagaagacataattggtgttactgtcctcttgttaacctgctcatatttgggacaggaatttgtacgagttgggtactatgtgaacaatgattatgatgatgagcagttgagagaagagcctncacagaaagtcctaattgatagggttcaaagaaatatattaacggacaaacctagagtaacgaagttccctattaacttncgncctgaaaatagcgaaagagaggagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="47323" stop="44252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47023" g_stop="46765" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46764" i_stop="45025" i_length="1740">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45024" g_stop="44909" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="375" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44908" i_stop="44816" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44815" g_stop="44552" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="639" r_length="264" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E344602" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47023" e_stop="46765"/>
          <exon e_start="45024" e_stop="44909"/>
          <exon e_start="44815" e_stop="44552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTCTAACCATAACCAGTTGCCTTTTCTGCTTGAAAATTATTGGCTATGGCGGTGAGAACAAGTCTGTCTCTGCGACGGAGATTTTAGATTCCAAACTTTTCTTGTGCTGGTTCAAACGCCGACCAGAGTTACAGCTTTGATACAATATGAGTGCGGTGAACATTACAAATGTCGCCGTATTAGACAATCCGGCGTCGTTCTTGTCCCCGTTCCAGTTTGAAATATCCTACGAGTGTGTCACTCCTCTCCAAGATGGTACTTCTTCTTTTACCCTCTTTTGCTTTCGTTTGCATGTTGTATCTCTATGACTACTTATTAGGGTTACTTTCATATGGAAAGTTGACTCTTTTGCTTTCTTTTGCATGTTGACTTATTAGGGTTATTCTCATATAGAAAGTTGATTGGGGAAGACTTGTCAGTGTAAATTCCTATTTCAATTGATTTGACTAACTTGTTTACATCTTTGTTTCTATTATATTATAATATGAGATTGTTCATTTTCTTTCTGATTGTTTTAATTTCTACCAGTGTTTGTTCATGCCACATGAATCCAAGGGACAAATATTTTTGTGTGTGGGGTATCTCAGTTTAAACATAATGATACAATCTGGAATTTGGGCTAACTGGACTTGGTAAAATACAGCTAGGAAGTGTAAACAGAGGAAGAACTAAGAGCTAAGCTAGGGTTCATGTGTGCGTAAAAGCAATGAAGTATCTTGAAATGTGTGTGTAAAAGCAATGAAGTATCTTGACATGTCCTTGTAAAGTATGCTTTCTAGTTGGTTCAAGTTGTTTGTGTGTGTGTGATGATGTTAGTTCCAGCAGTAGCTTCAAGAATGGGAACTTTAAGTTTCCATTTCTAGAACTGATAAGTACATACTGCATATTACTATTATCATTTTCTGATGACCTGCAGTTAAAAAGATTTTTCTTATAATGTTATAGGAATTTCCTAGTATAATACTTAATAGCATGTTTATGTGCTGCAGTAATACAGTTTAGAGTCCTCCATTCTATTTTGCATATTTCCTTTGGGGCTGTTTGGTTTGTTGATGAGATTAGACGGTAAATTACTACAATTAAACTTGGGACTGGATCTGGATGGAAGTTCTTTGCGAAATGGATTGTTGTGAGGGATAAAAAAATGCTTATTTGGGTGAAAACTGTATTTGGGATTTATAGGTTTTTATCCTCGGGGAATTTTGATTGGGTGGTTTCGAATTAAAACAAGGATTTTTTTTACCTTACATACTTTCCTTTGCTTAATTCATGAGATACCGATACAAGGTGGAAACAACTTTTTAATCCAGGTGTTCATCTAGTTAAGTGTCAATTAAGCTGTAAACAAAAACAAAACACAGTATGATTTATTTGTAGAAAATTCATATTATGGCCCATAATATGAGTAATTTCTCTCGGAGAACTGGTGATCTGCCAGTAGCTGGACATCGAATCATCAATTCGAAGAACAGATAGATGATGCTGTAGTACTGTTGCTTACTTAACCCTTAAGTCAAAATCAGAGGCGGATGTTTATCCTCCTAATCTGATTGGGAATTATTTGGTTGTAAATCAGTATGAGAAATGATTATTAGGACGTCAACCATCTTTCCCAACTTTTAAGACTATTTAGGTAGTTAACTAGGGAAGAAAATGGACTTAATATTTTGTTGTGGTAACACAATTCTCTTCTCTTTTGAGGATCAAAATTTCAGTAAAATGATCTAGAAGTTGGTTGAACCTTTAGAAGCTATATTCGTTGCAGATAGAAATTCTCCCATCAAATTTATCTTCTCTCTTTTTTTAAAAGCCAGATACGTTCTGGCTGTTTTTCAAGATTTACACTACCAAGTGTTTCACATGGTTAGTGAGGATTTATGTAGCTGACCCTAATTAGTTTGGAATTGAGCCCTAGTTGTTTCTTTTGATGTTGTTGTAAGTATGATTTATTTGATTTTGGTGGCATCCATTTATCTCTGTCATATGCTCATGCAGATTTGGAATGGAAGCTCATTTATGTGGGATCTGCCGAGGATGAGACATATGACCAAGTTTTAGAAAGCGTTCTTGTTGGCCCTGTAAATGTAGGAAATTACCGCTTTGTCTTGCAGGTATTATCTCCTAGATTCCATTTGTCCGTTGTGGTACTACTGCTTTGTCTGCCTTATTGAATTTATGTTATATTTTCCGAACTTTGATGCTAGGCGGACCCTCCAGATCCTTTGAAAATTCGTGAAGAAGACATAATTGGTGTTACTGTCCTCTTGTTAACCTGCTCATATTTGGGACAGGAATTTGTACGAGTTGGGTACTATGTGAACAATGATTATGATGATGAGCAGTTGAGAGAAGAGCCTCCACAGAAAGTCCTAATTGATAGGGTTCAAAGAAATATATTAACGGACAAACCTAGAGTAACGAAGTTCCCTATTAACTTCCGCCCTGAAAATAGCGAAAGAGAGGAGCAA</genome_strand>
        <mrna_strand>GTTGTTCTAACCATAACCAGTTGCCTTTTCTGCTTGAAAATTATTGGCTATGGCGGTGAGAACAAGTCTGTCTCTGCGACGGAGATTTTAGATTCCAAACTTTTCTTGTGCTGGTTCAAACGCCGACCAGAGTTACAGCTTTGATACAATATGAGTGCGGTGAACATTACAAATGTCGCCGTATTAGACAATCCGGCGTCGTTCTTGTCCCCGTTCCAGTTTGAAATATCCTACGAGTGTGTCACTCCTCTCCAAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAATGGAAGCTCATTTATGTGGGATCTGCCGAGGATGAGACATATGACCAAGTTTTAGAAAGCGTTCTTGTTGGCCCTGTAAATGTAGGAAATTACCGCTTTGTCTTGCAG.............................................................................................GCGGACCCTCCAGATCCTTTGAAAATTCGTGAAGAAGACATAATTGGTGTTACTGTCCTCTTGTTAACCTGCTCATATTTGGGACAGGAATTTGTACGAGTTGGGTACTATGTGAACAATGATTATGATGATGAGCAGTTGAGAGAAGAGCCTNCACAGAAAGTCCTAATTGATAGGGTTCAAAGAAATATATTAACGGACAAACCTAGAGTAACGAAGTTCCCTATTAACTTNCGNCCTGAAAATAGCGAAAGAGAGGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231262" ref_strand="+" ref_description="SGN-E231262 [cLED-5-P7]">
      <seq>tgtgttcaattctactccttatgagggactggtcgaaaacctgaaagattgtctgcagcgactttcagcagaagtagtagaagcatataacatccttcccagcttggatgtacttgttccttccttgatggagaaggggattgagttttcctcaaatacattgtcaatggctccaggcatacccatcaaaccaatgcttgcaaagattactaatggggtccctcaagtgatgaagctctttcagaacaaagcctttacatgtgaatacaaatatgatggtcagcgagctcagattcataaactgtctgatggttcagtccgtgtattttcaaggaatggggatgagacaacatctagatttccggatttggtaaatattattacagaatcatgtgattccagaggagcaacatttatcttggatgcacaggttgttgcaattgataggcaaaatggtccaaagctcatgtcgttccaagaactatcttcacgtgagagggggtccaaagattccatcattgcgttagataaaattaaggttgagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="59594" stop="53215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59294" g_stop="59237" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59236" i_stop="58873" i_length="364">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58872" g_stop="58825" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="106" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58824" i_stop="57894" i_length="931">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57893" g_stop="57796" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="204" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57795" i_stop="57704" i_length="92">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57703" g_stop="57638" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="270" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57637" i_stop="56147" i_length="1491">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56146" g_stop="55987" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="430" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55986" i_stop="53634" i_length="2353">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53633" g_stop="53526" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="538" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E231262" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59294" e_stop="59237"/>
          <exon e_start="58872" e_stop="58825"/>
          <exon e_start="57893" e_stop="57796"/>
          <exon e_start="57703" e_stop="57638"/>
          <exon e_start="56146" e_stop="55987"/>
          <exon e_start="53633" e_stop="53526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAGGTTTATATTCTATTCATCTGGAGGTTGCGATCCTGTCAAGTGTCAACAGTAATCTGTCTTTTATTTCATTTGTAAGAAAGCCCATTCTTCATGAATGTATTCACCTTGGATCCTGTGCTTATCCTTTGGTGGACTACACTTGAAGATGGTTCTCTTTCGAGGACATAAGTAAAAATTGCTGGCAGTTGATGTTTGGTTTACTTTTGATCTGCTCTATTATTGATTGAAGTGGGAAACTGTGTCTTGATTCTTTAATTTATATTCTACTGTCATATCTTGTGCTTTTCCCTTTCGTTTCTAACTCATTTATTTTGCCTCAGTGGTTTGCCTACTGACGAGTAATTTTTCATTTCCTTGCTGTTAGCGACTTTCAGCAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTGGTAAGATTCACTCATCATGTCTCTAATAGTTTACTGTCAAGAGTTAAGTGATATTCTTTTCTTTCAAGTGTTTATGAACTTTTAAGCTGTAATATATGTTTCCAATTATTGTTGAAGTGGTTAGCCATCTCATCTAAGAGTTTAATCTGTTAGAGAGAGTACACTTCCTATTTCCCTTTAGATTGAAGTGTTACTTTTACTAATTTTAAAAGTTTAATCTAAAAGTGTGCTCTCTCTAAAAAAAATAAATAAATCCAGATCTATTGGAAGTTGTTCTTTTTCTATCTCCAGTCGGGTGCCATTAATTTATTTTATTTTTGCAAAGTCCACGATAAGTTAGAAAAGAACAACTTTCAAGTGAAGATAGAACAGCTATTATCCTGGTCAGGGATAAGTTGCAACAGAAATGTGTTATTATTTCCTCCAAAGGGCGGTGAAGGCCTTGTTCACACTAGCATTCACTATTTCTTTTAGTTTTAAGCTCTTTTAGTGCTCTATTTTCCTTACTCACCTGGCCAGCTCAACATTGCTACCTCTTTCACAGCTTCATGTTGTGTCACTCAATTTGTCTTCCAAATATTGAAAACAAATAGCTATTATTTTCTGTCTTTCTGCTTCAATAATCCTAAACGTGCTGTGTTAAAATAATGAAGTATATCAGTTCTCACTTATATCCTTCCCCATGAGCCTATTAATATTTGAGTATTATTTTCCTAGACTATGTAATGATTGTCGTTTGTGTTAAATTTATTTAGTCTCTGTTTCCGTCAGGATGTACTTGTTCCTTCCTTGATGGAGAAGGGGATTGAGTTTTATGTCAGTTCTCACTTATATCCTTCCCCATGAGCCTATTAATATTTGAGTATTATTTTCCTAGACTATGTAATGATTGTCGTTTGTGTTAAATTTATTTAGTCTCTGTTTCCGTCAGGATGTACTTGTTCCTTCCTTGATGGAGAAGGGGATTGAGTTTTCCTCAAATACATTGTCAATGGCTCCAGGCATACCCATCAAACCAATGCTTGCAAAGTACATATATTATTGCTGTGATACGCTTCATCCTGCTGTTTCTTTCCTGACGGAGCCATTTCTTACACTTCCTCAATTTTTGCTTGTGATAGGATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAAGTAACCGCTAACAAGACCTGTTATTTGCTCTTATGTTCTTGATTTTTTTTTTTGAAAAATCACTTCTAAATCTGAGTCTTTGGACATGTTTGCTAATTGTTTCATTTGCTTGGTAATCCCTCGATGTTGTGAACTGGACGCTCTGGGAGAATGAAATTACCAATCTAGAGGAGCTGCTGGGAACACATGATCCCTGAATTGCAAAGCATCTCCTTCGGGATTTCAGTGGGGTGGGCTTGTTCTTAAGTAATTATCATGAAGTATGTTCCTTTGTGGAACTTCTGCTTTGTTGGCATCACGTAACAACAGAGCATATTATCTGTCTTCGAGAAATTGAGAGTGCTAGAGCACCTACCCCCCCACCCCCCACCCACGCCCAAAAAAAAAAGATAAAGAAAAAGAGGAGGAAAAGCAAAGAAAAGTGAGGACGAAAAAATAATTCGGGTAGTAGAGCTAGCATTCTTTTACCTTTTGGTAGTTAACTTTTAGTTGATTGCAAGTAGGATGGGTTAACGATCATTTAAGAATTCTTTTTCCAAGTACAATTTTAGGAACTCTTTTTATTTTTCTCTATGTCTTCAGTTCTGGTAAGACGTTGTTAAAGTTCAACTGTCTTCATAAACTTTAGGGGGGTAGTGGTTGTAGGGTTATTTGGAGTGCACATTCCTTTTGAGATGTTCCTCAGTCATATCATTGAGGTACTGGTTTCAAAGTGCTTAGTAATTTTCTTCTTTATGTTTTAGTATCCGATGTGGTGGATTGCAACATTTTTTTTTAATCAAAACCTAATATTGTTATTTTTTCTCATTGTGGTGCAAGCAGAGTGGTAATGGCTCCTGTAGTATCACAGTCCTCTAATTAGCACCCTATTGTCTCTTATGAGTCAATTATGTTCAAAAAGCCCAAAAGAGATGACACTTATTGGGCTTTTACCTTTTCTGTGCTTCCATTTTAAGTAAACATGTGTGTGCCTGAGTTATCACATGAAGTTCTTGTTTTAGTGGGTTATCAACCAAATTTGCAACGATCAACAACAACAACAATATACACTGTGAAGAATAGCCAACATAGACGAAGAAAGATTGATTTTAACCCTCAAAGGATGCATAGAAAGAAGAATAAAAAAAGACCAAAATCAAGGAAAGGAAGAAGAGATCAAATACAACCAGGAAACTGCAATAGTATTTGAAAAAAAAGAACAGAATGAAAAGCAGGGAACGAACAAAAACATAAAAAGAAAATTTGAAGCAACAACCGAAGAGAAAAGAGAAATAAGAATTGTTTATGAAACACTACCACTAGTGGGATCTATGGAGGGTGGTGTGTATGTAACCTTGATGAACAATTATGCATCAAAAAGATAGATGAATGTATTGACATTTGATGGACATCTAAAGAGAGACTCTTATGTATGCTTTATCCATGTTAAACTATTTCTTTTTGATGTTGAATGTTGGAATATAGTTATATCTTCGAGATCTCTATTTGCAGATATGATGGTCAGCGAGCTCAGATTCATAAACTGTCTGATGGTTCAGTCCGTGTATTTTCAAGGAATGGGGATGAGACAACATCTAGATTTCCGGATTTGGTAAATATTATTACAGAATCATGTGATTCCAGAGGAGCAACATTTATCTTGGATGCAGAGGTATTTCTTCAGAAATTCCACTTGTAAGTAGAAAGGTTTTGGGCGATCGAAAACAGCCTCTCTACCTCTTAAGGTAGGGGTAAGGTTTGCGTACAATGTACATACTACCCTCGGTATACCCCACTTGTGGGATTACATTGGGTATGTTGTTGTTTTAAGTAGAAAGATTTAGGGGGTTGTCACATAGCCATGGAATATTTGAAAAATAGGGATCCTATACAGATTTCAGAAGATATTATATTTGAAGGATGTAATTGGACATAAGACCTAATTAATAACACTGCAATCAGTTTTAAGGCTGTTAAAAAAAGGTCCAAAAAGGGAAAAGATTGATGCTTATTAGAGCATCCAAACATCTAATACTGAGAAAAGCATATGCTAAGATACAACAAAAAACTTGTATCCAACTAAAAGAATAATAATATTGCCGTAAAAGAAGAAAAAACAGCTCATAAAAATATAAAAACAATTGTTCAACCCAAGTCAGAGAGTGAAAGAAGTTCAAAAGAAAAAGAAATAGGAGAAGAGAAGACTTACTCTGAGACACAACAATTATTAATTAGTCTTGAATTTTGACGGTTGGACCATTTATTATCTTTATATATTAATGGTTGAGAATCTTGAGGTCTCGGGTTCAAAAGCTCAGCGGGGACACACTAAGTGATTCTTCTCATTTGTCCTAACCTGGTGGATAGTTACTAGGTACCTGTTGTTGTGGGAGGTGATAAGTGTCTCGTGGAGTTAGTCAAGTTGCACAAAACCTAGCTCGGATACCATGGTCAATTTATGCTTCTAAGCATTGTTCAGATCGAAAGGTGGTAAGCTGGGGAACTTTGCATGTACTAGGCCTTAAGATTTTTATTTCTAAAATCTGGTTGATTACACCGAGGATCCAGTAATCTTGTCTACTTATAGTTATATGTAGGATGTAAATATGGAAATTTGTGTCCGAACAAAGGGGCACTTGTATATATATATTAGGACGCCTTTATCTTGTGAAGAATGAGGTATCTTGGCTCTAGTATCCAAGAAAATCGGGAGATTGATGATTATTGCTCATCGTATTGGAGTGACATGCTCACTAGTCAAGAACACACACATTTAGAAGATAAAATGAAAATAAGGATGCTTAGATGGATGTGTGGGCATACTAAGAAAGATAAGATAAAGAACAAAGTTATACAAGATAAGGTGGGACTGATTTCTGTGGTGGATTATGCCTGAACATAAAATAAAAGAGGGGTTTCTATATTGCCTCTTGGTGCTCTCTCTGTAATGTGTAATGAGACTGAGGAAACCAACAACCATCTTTTCCTCCATTGCAAAGTGACAACACAGTTGTGGAACCTTTTTTTGGAGCTAACACATACAGAAAAGATTATGCCTGAACATACATTAGATCTACTTAGTTGTTGGATCAGCAGCGGGGGAGAAAATCTAAGAAAAAGTGGTGGAGTATAATACCATCATGCATTTGGTGTGTATTTGGAAAGAAAGAAAAAGCATATGCTATGATAACAAAGTAAATTCAATAGAGAAAGCCAAATGGAACTTCTCGTCTTCTTTTTATTTTTGGTGTAAAGAGGAATGGATAGAATAAGCTGCACAAATTTGGATTTTATAAGCTCTTTGTAATCTATTAGCCTTTTTTTTTTCTCTTGTTGGAAACCAATTTTTGGAGGTCTCCAGCATATCCTTAATGCTGATGTACAACATTATCTTTGTAAAAAAAAAAAAGATTTTTGTGGTGGACAAGATGTGAGAAACAAGACTGAGATGGTTCGGGCACGTGAAGAGATGTATAAATGCACTAATGTGTGAGAGATCGCCTATAGTAGGTTATATGAGAGGTAGAGGTAGATCGAAGAGGAATTGGGGAGGTGATTAGACACGACACGACACATTTTCAACTTACTAAACACATGACCTTAGAATCCTAGCTAGGAAAGTATGGAAATCAAGAATTATGGTAGAATAGCATTAGGTAGCCGCGTCTTGTCATACCTTTTTAAGGTAGGAAAGTCAGCGTTTCAATCTCCTTTTCTCATCTTCTCTTTTTTAGTAGTCGTGTAGTATCTTATTCTTCAATTTTCATCACTACATGTAGCTCCATTTTCTTTGTTTATCTTGCTATTTTGTTTTCATTGTTTTCTTTCAATCTTTGTTTTGATTACACCTCTTTCGAGCCGAGGTTATATCAAAAATAGCCTTTTTACCCCATAGTGGTAGGGGTAAGGTTTGGGTACATTCTACCCTTTCCAAACTTTGCTTGTGGGTTTTCACTGGGCATGTGGTTTTTGTAATTGCTATTGATGAACTTTTGTTGTTTCTGGAGTGATCTCCATTTTTTCAGGTTGTTGCAATTGATAGGCAAAATGGTCCAAAGCTCATGTCGTTCCAAGAACTATCTTCACGTGAGAGGGGGTCCAAAGATTCCATCATTGCGTTAGATAAAATTAAG</genome_strand>
        <mrna_strand>TGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAG............................................................................................................................................................................................................................................................................................................................................................................CGACTTTCAGCAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTACTTGTTCCTTCCTTGATGGAGAAGGGGATTGAGTTTTCCTCAAATACATTGTCAATGGCTCCAGGCATACCCATCAAACCAATGCTTGCAAA............................................................................................GATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGATGGTCAGCGAGCTCAGATTCATAAACTGTCTGATGGTTCAGTCCGTGTATTTTCAAGGAATGGGGATGAGACAACATCTAGATTTCCGGATTTGGTAAATATTATTACAGAATCATGTGATTCCAGAGGAGCAACATTTATCTTGGATGCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGCAATTGATAGGCAAAATGGTCCAAAGCTCATGTCGTTCCAAGAACTATCTTCACGTGAGAGGGGGTCCAAAGATTCCATCATTGCGTTAGATAAAATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300761" ref_strand="+" ref_description="SGN-E300761 [cLEW-8-P24]">
      <seq>tcaactttgccgacaaacacaatcattacttgctcctccagtggcacttacaattaggggtgtatactctgctcttagaaggataagcttgcaagcaggtagtgggagcgccatccgaaagaaaagcctgattgacaatctcatgtgttcatgtagagagaaggagatgaagtttcttgtgagaacgttggttcggaatttgcgcattggagccatgatgagaactgttcttcctgcattagctcaagcagttgtgttcaattctactccttatgagggactggtcgaaaacctgaaagattgtctgcagcagaagtagtagaagcatataacatccttcccagcttggattactaatggggtccctcaagtgatgaagctctttcagaacaaagcctttacatgtgaatacaaatatgatggtcagcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="61993" stop="55829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61693" g_stop="61607" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61606" i_stop="60431" i_length="1176">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60430" g_stop="60328" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="190" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60327" i_stop="59357" i_length="971">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59356" g_stop="59237" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="310" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59236" i_stop="58863" i_length="374">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58862" g_stop="58825" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="348" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58824" i_stop="57704" i_length="1121">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57703" g_stop="57638" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="414" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57637" i_stop="56147" i_length="1491">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56146" g_stop="56129" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="432" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E300761" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61693" e_stop="61607"/>
          <exon e_start="60430" e_stop="60328"/>
          <exon e_start="59356" e_stop="59237"/>
          <exon e_start="58862" e_stop="58825"/>
          <exon e_start="57703" e_stop="57638"/>
          <exon e_start="56146" e_stop="56129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAGGATAAGGTATGATTTTGACTCTTCTTTCTGGTTCTGACAGTTTGTCATTGCTGATCTTTTGATGAGAATGTATAGTCTTCTAGTATTCAGGATAGGCTTTTTTTACTGGTTTGACTCCTAGACCAGAGCCTATTGCCCCAGCCACATAGTCTCTTTTGTTACGTTAGCCGAAAATCCTTGGAATTTGAAAGAGAGAAAAAGTACATGACAAAATTACAGGCTAACCTCAGCAATGCACTTCTAAGTACACGACGGACTGTAATCCTGCATCATTTTCTTATCTTTTCTTTTAATGTCATGCGAATCCCTATCCTTCTTTTATGGCAAGTTTCTATTAGTATGCTATTGGATTTTATCTTATTCAGGGATAAAGTCTGTATAAGATGAAAAAGAACAGAACATTAGAATATGTTATCAGTTTCAGAAGTAAATGGTTGCTATCCATGGTCATGGAACTCGTTATTTGGTTCTGATCATTGTCTTTGTGACTTCTTTTTCTTTGTTTCGGGATTGGGCTGCATATCAGTTGGACTACTTTTTTTTTTTACTTCAGATGTAAGATTGACTTCATATATTTGGAGCTGTCCACCTTTTTCTGTCTGATTTCTGAAAAGTACCTCATGAATAAGATTCTATTATATAGAGAGGGAGATGCTATCCACTTTACTTGCAAATGTACAACTAGGATAGTTATCTTGAGCTCCACAACAACAACATACCCAGTGTAATCCGACACCTGCAGTTTGGGGCTCCTCATAGGGTGTATGTAGACCTTATCCCTACCTTTGTGGGGTAGAGAGATATGTTTTTGGTAGACCCTCGACTCAAGATTCGGTGGTTTGATCCAAGTATTATTAATATCTTGATTCTTATTCACATTCAATCTTGCATAAGATATCACATACATTCTCACATAACTTCTGCAGGTATTAGTTATGTGGAAAATAAATATTGGAAGCAAACAATGCTGAATAATTCTAATTTTAAAAATTAGCTTACCAAAATAAATGTCAAGTTTTGTGTGGAAAATAAAATGGAACAAAGACAATGTATTAACTATACGGAGCTTATTGTATTGAATAATACTTTTATGAATTTACCTCAATAATATATGTTTGCTCTACCTTTCTTGTCGTGCTGTAAGCTTGGTATGAAACCTTAATTTCCAATGCAATGCATCAGCTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGTCAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTGGTAAGTTTACGGTTTCAGTTTTCAAGGAATAAAATCCTTTCTTTGGTGTTGTAGGTCCATAAATGTGTAATAGTAATACTGATAAGAGCACTTCCCCAAAGTTCTATCGAATCCTGCAATATCTCATATTTAAATGGCATAAGCTAGTAAAGAATAACTTTCCAGAGTTACCCTTTTTTTAAAAAAAGAATTAACTTTCTAGATCTTTTTGCCCCCTTGCTCCCCTCAACCAGTTGGGTCTAGTTTGTTTTAAATTGCCCTTGTTGGCAAACTCAAACCTAATAGATTAGTATAATCACTGGAGTGTTGAGCTTTTATGTCCAATATCTGTCTTAATTTCATGCTTATTGCAGTAGTTTCTCTTCCCTCTTTCTCTGTTAAAGCATGGGTTAGTTTAAAAACTTATTTACATATTCCACAGTCGAAAGTTTGCTTCCTTTGTGCTCCCCATATAGCATCAGGTTATTGAAAAAGATTAAGCATCTTTAATGAAACTCTCTGCCATCCATAGTTCTCGATTGGTATCATTTCAGTATTGGCTTTAGGAGGAGCATGTAGTTTTGTGGATTAAGCGCCCAGGTCTTTGGTCTAGTGGTAAAAGTGTAGAGCATGAGTGTAGGTTAGGTGCACGTCATGTGTTCTCGAACCCTACCAAAAGCCTGATATTATAGTGGAGAAGGGTAGAATTTGGCTCATTATCTAGCGGGGTTCAAACCTTGTGCCACTGTCTCTAGGAGAGTTCACGGTCTTCAAATAAGAAAAAACGGTACAGTTTACACTAACTAATTATGACTTAGCTACCCATTGAGAACACTTTTAATCTAAATAAAGACCTAACCAAGCTCCTTTTCTTGTTCTGCCACTTTCAAAGTTCAAAATATGTTGACTTGTTGTGGAAGATGATGTGTGGTAGATTCTTGCCTTTTTCTTTAGCCATTTCAACTTTATTTACCTTTTCTGTTGCAAGTTAGGTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAGGTTTATATTCTATTCATCTGGAGGTTGCGATCCTGTCAAGTGTCAACAGTAATCTGTCTTTTATTTCATTTGTAAGAAAGCCCATTCTTCATGAATGTATTCACCTTGGATCCTGTGCTTATCCTTTGGTGGACTACACTTGAAGATGGTTCTCTTTCGAGGACATAAGTAAAAATTGCTGGCAGTTGATGTTTGGTTTACTTTTGATCTGCTCTATTATTGATTGAAGTGGGAAACTGTGTCTTGATTCTTTAATTTATATTCTACTGTCATATCTTGTGCTTTTCCCTTTCGTTTCTAACTCATTTATTTTGCCTCAGTGGTTTGCCTACTGACGAGTAATTTTTCATTTCCTTGCTGTTAGCGACTTTCAGCAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTGGTAAGATTCACTCATCATGTCTCTAATAGTTTACTGTCAAGAGTTAAGTGATATTCTTTTCTTTCAAGTGTTTATGAACTTTTAAGCTGTAATATATGTTTCCAATTATTGTTGAAGTGGTTAGCCATCTCATCTAAGAGTTTAATCTGTTAGAGAGAGTACACTTCCTATTTCCCTTTAGATTGAAGTGTTACTTTTACTAATTTTAAAAGTTTAATCTAAAAGTGTGCTCTCTCTAAAAAAAATAAATAAATCCAGATCTATTGGAAGTTGTTCTTTTTCTATCTCCAGTCGGGTGCCATTAATTTATTTTATTTTTGCAAAGTCCACGATAAGTTAGAAAAGAACAACTTTCAAGTGAAGATAGAACAGCTATTATCCTGGTCAGGGATAAGTTGCAACAGAAATGTGTTATTATTTCCTCCAAAGGGCGGTGAAGGCCTTGTTCACACTAGCATTCACTATTTCTTTTAGTTTTAAGCTCTTTTAGTGCTCTATTTTCCTTACTCACCTGGCCAGCTCAACATTGCTACCTCTTTCACAGCTTCATGTTGTGTCACTCAATTTGTCTTCCAAATATTGAAAACAAATAGCTATTATTTTCTGTCTTTCTGCTTCAATAATCCTAAACGTGCTGTGTTAAAATAATGAAGTATATCAGTTCTCACTTATATCCTTCCCCATGAGCCTATTAATATTTGAGTATTATTTTCCTAGACTATGTAATGATTGTCGTTTGTGTTAAATTTATTTAGTCTCTGTTTCCGTCAGGATGTACTTGTTCCTTCCTTGATGGAGAAGGGGATTGAGTTTTATGTCAGTTCTCACTTATATCCTTCCCCATGAGCCTATTAATATTTGAGTATTATTTTCCTAGACTATGTAATGATTGTCGTTTGTGTTAAATTTATTTAGTCTCTGTTTCCGTCAGGATGTACTTGTTCCTTCCTTGATGGAGAAGGGGATTGAGTTTTCCTCAAATACATTGTCAATGGCTCCAGGCATACCCATCAAACCAATGCTTGCAAAGTACATATATTATTGCTGTGATACGCTTCATCCTGCTGTTTCTTTCCTGACGGAGCCATTTCTTACACTTCCTCAATTTTTGCTTGTGATAGGATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAAGTAACCGCTAACAAGACCTGTTATTTGCTCTTATGTTCTTGATTTTTTTTTTTGAAAAATCACTTCTAAATCTGAGTCTTTGGACATGTTTGCTAATTGTTTCATTTGCTTGGTAATCCCTCGATGTTGTGAACTGGACGCTCTGGGAGAATGAAATTACCAATCTAGAGGAGCTGCTGGGAACACATGATCCCTGAATTGCAAAGCATCTCCTTCGGGATTTCAGTGGGGTGGGCTTGTTCTTAAGTAATTATCATGAAGTATGTTCCTTTGTGGAACTTCTGCTTTGTTGGCATCACGTAACAACAGAGCATATTATCTGTCTTCGAGAAATTGAGAGTGCTAGAGCACCTACCCCCCCACCCCCCACCCACGCCCAAAAAAAAAAGATAAAGAAAAAGAGGAGGAAAAGCAAAGAAAAGTGAGGACGAAAAAATAATTCGGGTAGTAGAGCTAGCATTCTTTTACCTTTTGGTAGTTAACTTTTAGTTGATTGCAAGTAGGATGGGTTAACGATCATTTAAGAATTCTTTTTCCAAGTACAATTTTAGGAACTCTTTTTATTTTTCTCTATGTCTTCAGTTCTGGTAAGACGTTGTTAAAGTTCAACTGTCTTCATAAACTTTAGGGGGGTAGTGGTTGTAGGGTTATTTGGAGTGCACATTCCTTTTGAGATGTTCCTCAGTCATATCATTGAGGTACTGGTTTCAAAGTGCTTAGTAATTTTCTTCTTTATGTTTTAGTATCCGATGTGGTGGATTGCAACATTTTTTTTTAATCAAAACCTAATATTGTTATTTTTTCTCATTGTGGTGCAAGCAGAGTGGTAATGGCTCCTGTAGTATCACAGTCCTCTAATTAGCACCCTATTGTCTCTTATGAGTCAATTATGTTCAAAAAGCCCAAAAGAGATGACACTTATTGGGCTTTTACCTTTTCTGTGCTTCCATTTTAAGTAAACATGTGTGTGCCTGAGTTATCACATGAAGTTCTTGTTTTAGTGGGTTATCAACCAAATTTGCAACGATCAACAACAACAACAATATACACTGTGAAGAATAGCCAACATAGACGAAGAAAGATTGATTTTAACCCTCAAAGGATGCATAGAAAGAAGAATAAAAAAAGACCAAAATCAAGGAAAGGAAGAAGAGATCAAATACAACCAGGAAACTGCAATAGTATTTGAAAAAAAAGAACAGAATGAAAAGCAGGGAACGAACAAAAACATAAAAAGAAAATTTGAAGCAACAACCGAAGAGAAAAGAGAAATAAGAATTGTTTATGAAACACTACCACTAGTGGGATCTATGGAGGGTGGTGTGTATGTAACCTTGATGAACAATTATGCATCAAAAAGATAGATGAATGTATTGACATTTGATGGACATCTAAAGAGAGACTCTTATGTATGCTTTATCCATGTTAAACTATTTCTTTTTGATGTTGAATGTTGGAATATAGTTATATCTTCGAGATCTCTATTTGCAGATATGATGGTCAGCGAGC</genome_strand>
        <mrna_strand>TCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAGGATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGACAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................CAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGATGGTCAGCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739628" ref_strand="+" ref_description="SGN-E739628 [LC18AH04]">
      <seq>acctatgtatcacttccccatgaggaatactctcccgtggaacatgcttgctggagtaaggggcaggctactccatacatacatcttgcacgaacttttgaattggtaaaggaagaaaaagggaagataaaagcaacgtcaatgttgtgcaatatgtttcggagcttgctagctttgtctccggaggatgtgcttcctgctgtgtacttgtgcacaaacaagatagcccctgaccatgaaaatatggaattgaacattgggggtagtactcatgtagcagcactagaggaggcatgcgggacaaagaaatcaaaagtacgagaactatacaacagcctcggtgatcttggtgatgttgctcaactttgccgacaaacacaatcattacttgctcctccagtggcacttacaattaggggtgtatactctgctcttagaaggataagcttgcaagcaggtagtgggagcgccatccgaaagaaaagcctgattgtcaatctcatgtgttcatgtagagagaaggagatgaagtttcttgtgagaacgttggttcggaatttgcgcattggagccatgatgagaactgttcttcctgcattagctcaagcagttgtgttcaattctactccttatgagggactggtcgaaaacctgaaagattgtctgcagcagaagtagtagaagcatataacatccttcccagcttggattactaatggggtccctcaagtgatgaagctctttcagaacaaagcctttacatgtgaatacaagtaaccgctaacaagaccctgttatttgctcttatgttcttgattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="64909" stop="57289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64612" g_stop="64567" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64566" i_stop="64424" i_length="143">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64423" g_stop="64306" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="164" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64305" i_stop="63533" i_length="773">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63532" g_stop="63451" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="246" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63450" i_stop="61934" i_length="1517">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61933" g_stop="61831" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="349" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61830" i_stop="61704" i_length="127">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61703" g_stop="61607" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="446" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61606" i_stop="60431" i_length="1176">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60430" g_stop="60328" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="549" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60327" i_stop="59357" i_length="971">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59356" g_stop="59237" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="669" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="59236" i_stop="58863" i_length="374">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58862" g_stop="58825" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="707" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="58824" i_stop="57704" i_length="1121">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="57703" g_stop="57589" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="823" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E739628" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64612" e_stop="64567"/>
          <exon e_start="64423" e_stop="64306"/>
          <exon e_start="63532" e_stop="63451"/>
          <exon e_start="61933" e_stop="61831"/>
          <exon e_start="61703" e_stop="61607"/>
          <exon e_start="60430" e_stop="60328"/>
          <exon e_start="59356" e_stop="59237"/>
          <exon e_start="58862" e_stop="58825"/>
          <exon e_start="57703" e_stop="57589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGTATCACTTCCCCATGAGGAATACTCTCCCGTGGAACATGGTTGGTTTCTTGTAATTACTATTGATATGAATTGTGTAATTTTTGGATGTATTCCAGCAGTCCAACTCTTGCCACTAAGTAAAATTTGTTCAGTAGTAAAATAATTCTTTTTTTCCTTTGCTTTCTTTCATTCTATTCCCCAGCTTGCTGGAGTAAGGGGCAGGCTACTCCATACATACATCTTGCACGAACTTTTGAATTGGTAAAGGAAGAAAAAGGGAAGATAAAAGCAACGTCAATGTTGTGCAATATGTTTCGGAGGTTTGTTGCTTATTTTTTTTTAAAATCTTTAGTCTGTTGTAGGTTTATGACTCAGCATATCATATTGGATCCACAGCAGCATGTTGACAAAATTATCCAGTATGGTATCATTATCTTAATAGTAGGTTACAAAATTGTCAGGTTATGGTGAGGGTTATTGTTAGGGGTTTAAGCACGGAATGTTTTGATAGCTTTTGTTCTACATTTGGTTTATTGGATTAATACTGGCTTCTATTTGGGTTGAATAAGCACTTTTTAGAAAGCTTGGCAAAACACTAATTACTGCTCAAAAGTGCTTTTTAAAATTAATTGGCCAAACACAAACTGTTTCTCACCAAAAGTAATTTTTTGAAAAGAACTTCTGAAAAAGAACACTTTTCAAATTAAGCTGATTTTAGAAGCTTGGCCAAACAGGTTCAATGTCTTTGCTGTCAAAGCAAATTTACATCTCAAAACCGAAAAGGAACACTGCTCTACTTTCTGCTTGGTATAAAGAGGGGGGGGGGGTAGAGACGGCAGGATGAATGTGGGATAAAACTTAAAATGGTAGTTTATGCATAATTTGTTGGTTCTGCTCCCCTTGCAGCACCACTGCGGGAAAAATAATCAATCTCACATCTCTGGAGTCTTTTTGTTGGGGGTTGGTGGGTGTGGATAACACCTATCATTGTTCACTCTTTGATCCAGAAAGAAAGTGTGTGGTTTCTTCTGGGAAAAATGAACCCTTTGAAGTTATTGAGCTGTTTCAGTTAATGAGTTGCTCTCATTTGCAGCTTGCTAGCTTTGTCTCCGGAGGATGTGCTTCCTGCTGTGTACTTGTGCACAAACAAGATAGCCCCTGACCATGAAAATATGGTTGGTTTAATTGATTTTCTATATGATTGCTTCTTCATCACTGCTCGAGTTGTTGCGAAAACACTGATGCAATTTTCTTCTTACTATTTTTGCGCATCTATTATTTTGATTTTACTAGTGATGCCCAGGAGTATGTATTAATTGATATGAACAATAATATTTATCCGTGTTTGTACTACCAAATGGTTACTGTCAAAGCTTCGTAGGTACCTTTAGAATACAGTCCTTCAAACACGTAACCAGCCGTGAATTCCAGTGCTTCATCTAATTAAGTAATCCATCTGTAATTTCCTGTTACCTGAAAGGTATAAATACGAAAAGTACTTCTGAGCTTTTCCTGAAAAGAAACTGCTCATTTGTCTCCATGCTGTTAAATATACGACATGAATTATCATCCTATAATTCTAAAAGGGTTTGCCTTAGCACAGTCACCCTATTTAAGCTTGTCTCAGGAAGTGGTACTCTTGTCACACATTTAATGGATTTATTGTGACCACCTCTGAAATAAAAAAATTAAGAAATGCACCAGCTTTTACTTTAGGTGTATGCTATAAATTGGAATTTGGAAGTTACAAAGGGATGATTTTGAAAATATACCCAAAAACAGTTTTTTTTTTTTTTTACAAATCAAATAAAAACCATTAGTATTATTACCCCAAGTTAGAGGAAGGGGAAAGGTGAGTGAGGGGGGCTAAAGAAACATGAGAGGGTGTGTGGGGGATCCAATTAGTTGGATTTTCCCTTTGAAGATTGCAGACAGCCTTTTTTTATTTGCCTTGATTTTTCTGTAAATAATTCTCTGTTGGGAGGTAAAATTGTTATTAATGCATCTTGGTTAAGATCACTATCATTTAATTGTCACCGACATGGATTGTGACGGTTGCCGAGGTCCTTCCAACAACATTAAACTAGAGAATGATGTACTGCATTTTTCGCAGTAACGAGAATTTCCATTTAGTTTCATGAACTGAATGGGAGCCTAAATAATCCACCCCAGTTAAAACAGAGAAAAGAGTATATAGGTTTTTCTCCTTTATACTGCTGTTCCCCTGACATCATCACATTATTTCTTGAAGAAGATTTTACTGCCATAGCTTCCTATCATATTGAAAATTGAAAAATTGTTGTATACTTGAGAATTCGTCAGCCAGAAGATAACCTACTATGAAATGCAGGGCTTTCATAATCTCATATCTCAATAGTAACTTCTTGCTTCTCCTGATAGAAAAGATAGTAATTCTTTCTGCCTTGGAAGAGGGTGGATTTATGTGTGACATTAACAATCACATCATTTGGTGTTATGCGCATGTGCTTTTTTGCAATTTACAAATTTCTTATTTTGTGAGTGAATGCGTTGTATACCTGTGCATAATTCACCAATCAAAAAATATCTGTGCATGATCTTACCAATCAAAAATACCTGTGCATGATTTTATACATCATGTTGTTACTTCTGTCTTTTTTTTATTATAGCAATTTACAGAGCACTGTTTTGATTCTGATCTTATCATAATCAGGAATTGAACATTGGGGGTAGTACTGTTGTAGCAGCACTAGAGGAGGCATGCGGGACAAAGAAATCAAAAGTACGAGAACTATACAACAGCCTCGGTGATCTTGGTAGGAACATTTATCATTTTATGTTGCTGGACAATTGATAGCACAAATTTTCATGTTTCTCCTTTCTTTGGTTTGCTTGGATTCTTCTTTAATGGGGCTGGACCTTGTTGACCCTAATTTGTATTAGGTGATGTTGCTCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAGGATAAGGTATGATTTTGACTCTTCTTTCTGGTTCTGACAGTTTGTCATTGCTGATCTTTTGATGAGAATGTATAGTCTTCTAGTATTCAGGATAGGCTTTTTTTACTGGTTTGACTCCTAGACCAGAGCCTATTGCCCCAGCCACATAGTCTCTTTTGTTACGTTAGCCGAAAATCCTTGGAATTTGAAAGAGAGAAAAAGTACATGACAAAATTACAGGCTAACCTCAGCAATGCACTTCTAAGTACACGACGGACTGTAATCCTGCATCATTTTCTTATCTTTTCTTTTAATGTCATGCGAATCCCTATCCTTCTTTTATGGCAAGTTTCTATTAGTATGCTATTGGATTTTATCTTATTCAGGGATAAAGTCTGTATAAGATGAAAAAGAACAGAACATTAGAATATGTTATCAGTTTCAGAAGTAAATGGTTGCTATCCATGGTCATGGAACTCGTTATTTGGTTCTGATCATTGTCTTTGTGACTTCTTTTTCTTTGTTTCGGGATTGGGCTGCATATCAGTTGGACTACTTTTTTTTTTTACTTCAGATGTAAGATTGACTTCATATATTTGGAGCTGTCCACCTTTTTCTGTCTGATTTCTGAAAAGTACCTCATGAATAAGATTCTATTATATAGAGAGGGAGATGCTATCCACTTTACTTGCAAATGTACAACTAGGATAGTTATCTTGAGCTCCACAACAACAACATACCCAGTGTAATCCGACACCTGCAGTTTGGGGCTCCTCATAGGGTGTATGTAGACCTTATCCCTACCTTTGTGGGGTAGAGAGATATGTTTTTGGTAGACCCTCGACTCAAGATTCGGTGGTTTGATCCAAGTATTATTAATATCTTGATTCTTATTCACATTCAATCTTGCATAAGATATCACATACATTCTCACATAACTTCTGCAGGTATTAGTTATGTGGAAAATAAATATTGGAAGCAAACAATGCTGAATAATTCTAATTTTAAAAATTAGCTTACCAAAATAAATGTCAAGTTTTGTGTGGAAAATAAAATGGAACAAAGACAATGTATTAACTATACGGAGCTTATTGTATTGAATAATACTTTTATGAATTTACCTCAATAATATATGTTTGCTCTACCTTTCTTGTCGTGCTGTAAGCTTGGTATGAAACCTTAATTTCCAATGCAATGCATCAGCTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGTCAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTGGTAAGTTTACGGTTTCAGTTTTCAAGGAATAAAATCCTTTCTTTGGTGTTGTAGGTCCATAAATGTGTAATAGTAATACTGATAAGAGCACTTCCCCAAAGTTCTATCGAATCCTGCAATATCTCATATTTAAATGGCATAAGCTAGTAAAGAATAACTTTCCAGAGTTACCCTTTTTTTAAAAAAAGAATTAACTTTCTAGATCTTTTTGCCCCCTTGCTCCCCTCAACCAGTTGGGTCTAGTTTGTTTTAAATTGCCCTTGTTGGCAAACTCAAACCTAATAGATTAGTATAATCACTGGAGTGTTGAGCTTTTATGTCCAATATCTGTCTTAATTTCATGCTTATTGCAGTAGTTTCTCTTCCCTCTTTCTCTGTTAAAGCATGGGTTAGTTTAAAAACTTATTTACATATTCCACAGTCGAAAGTTTGCTTCCTTTGTGCTCCCCATATAGCATCAGGTTATTGAAAAAGATTAAGCATCTTTAATGAAACTCTCTGCCATCCATAGTTCTCGATTGGTATCATTTCAGTATTGGCTTTAGGAGGAGCATGTAGTTTTGTGGATTAAGCGCCCAGGTCTTTGGTCTAGTGGTAAAAGTGTAGAGCATGAGTGTAGGTTAGGTGCACGTCATGTGTTCTCGAACCCTACCAAAAGCCTGATATTATAGTGGAGAAGGGTAGAATTTGGCTCATTATCTAGCGGGGTTCAAACCTTGTGCCACTGTCTCTAGGAGAGTTCACGGTCTTCAAATAAGAAAAAACGGTACAGTTTACACTAACTAATTATGACTTAGCTACCCATTGAGAACACTTTTAATCTAAATAAAGACCTAACCAAGCTCCTTTTCTTGTTCTGCCACTTTCAAAGTTCAAAATATGTTGACTTGTTGTGGAAGATGATGTGTGGTAGATTCTTGCCTTTTTCTTTAGCCATTTCAACTTTATTTACCTTTTCTGTTGCAAGTTAGGTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAGGTTTATATTCTATTCATCTGGAGGTTGCGATCCTGTCAAGTGTCAACAGTAATCTGTCTTTTATTTCATTTGTAAGAAAGCCCATTCTTCATGAATGTATTCACCTTGGATCCTGTGCTTATCCTTTGGTGGACTACACTTGAAGATGGTTCTCTTTCGAGGACATAAGTAAAAATTGCTGGCAGTTGATGTTTGGTTTACTTTTGATCTGCTCTATTATTGATTGAAGTGGGAAACTGTGTCTTGATTCTTTAATTTATATTCTACTGTCATATCTTGTGCTTTTCCCTTTCGTTTCTAACTCATTTATTTTGCCTCAGTGGTTTGCCTACTGACGAGTAATTTTTCATTTCCTTGCTGTTAGCGACTTTCAGCAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTGGTAAGATTCACTCATCATGTCTCTAATAGTTTACTGTCAAGAGTTAAGTGATATTCTTTTCTTTCAAGTGTTTATGAACTTTTAAGCTGTAATATATGTTTCCAATTATTGTTGAAGTGGTTAGCCATCTCATCTAAGAGTTTAATCTGTTAGAGAGAGTACACTTCCTATTTCCCTTTAGATTGAAGTGTTACTTTTACTAATTTTAAAAGTTTAATCTAAAAGTGTGCTCTCTCTAAAAAAAATAAATAAATCCAGATCTATTGGAAGTTGTTCTTTTTCTATCTCCAGTCGGGTGCCATTAATTTATTTTATTTTTGCAAAGTCCACGATAAGTTAGAAAAGAACAACTTTCAAGTGAAGATAGAACAGCTATTATCCTGGTCAGGGATAAGTTGCAACAGAAATGTGTTATTATTTCCTCCAAAGGGCGGTGAAGGCCTTGTTCACACTAGCATTCACTATTTCTTTTAGTTTTAAGCTCTTTTAGTGCTCTATTTTCCTTACTCACCTGGCCAGCTCAACATTGCTACCTCTTTCACAGCTTCATGTTGTGTCACTCAATTTGTCTTCCAAATATTGAAAACAAATAGCTATTATTTTCTGTCTTTCTGCTTCAATAATCCTAAACGTGCTGTGTTAAAATAATGAAGTATATCAGTTCTCACTTATATCCTTCCCCATGAGCCTATTAATATTTGAGTATTATTTTCCTAGACTATGTAATGATTGTCGTTTGTGTTAAATTTATTTAGTCTCTGTTTCCGTCAGGATGTACTTGTTCCTTCCTTGATGGAGAAGGGGATTGAGTTTTATGTCAGTTCTCACTTATATCCTTCCCCATGAGCCTATTAATATTTGAGTATTATTTTCCTAGACTATGTAATGATTGTCGTTTGTGTTAAATTTATTTAGTCTCTGTTTCCGTCAGGATGTACTTGTTCCTTCCTTGATGGAGAAGGGGATTGAGTTTTCCTCAAATACATTGTCAATGGCTCCAGGCATACCCATCAAACCAATGCTTGCAAAGTACATATATTATTGCTGTGATACGCTTCATCCTGCTGTTTCTTTCCTGACGGAGCCATTTCTTACACTTCCTCAATTTTTGCTTGTGATAGGATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAAGTAACCGCTAACAAGA-CCTGTTATTTGCTCTTATGTTCTTGATTTTTTT</genome_strand>
        <mrna_strand>ACCTATGTATCACTTCCCCATGAGGAATACTCTCCCGTGGAACATG...............................................................................................................................................CTTGCTGGAGTAAGGGGCAGGCTACTCCATACATACATCTTGCACGAACTTTTGAATTGGTAAAGGAAGAAAAAGGGAAGATAAAAGCAACGTCAATGTTGTGCAATATGTTTCGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAGCTTTGTCTCCGGAGGATGTGCTTCCTGCTGTGTACTTGTGCACAAACAAGATAGCCCCTGACCATGAAAATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGAACATTGGGGGTAGTACTCATGTAGCAGCACTAGAGGAGGCATGCGGGACAAAGAAATCAAAAGTACGAGAACTATACAACAGCCTCGGTGATCTTG...............................................................................................................................GTGATGTTGCTCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAGGATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGTCAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................CAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAAGTAACCGCTAACAAGACCCTGTTATTTGCTCTTATGTTCTTGATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330155" ref_strand="+" ref_description="SGN-E330155 [cTOD-5-B14]">
      <seq>agaaatcaaaagtacgagaactatacaacagcctcggtgatcttggtgatgttgctcaactttgccgacaaacacaatcattacttgctcctccagtggcacttacaattaggggtgtatactctgctcttagaaagataagcttgcaagcaggtagtgggagcgccatccgaaagaaaagcctgattgtcaatctcatgtgttcatgtagagagaaggagatgaagtttcttgtgagaacgttggttcggaatttgcgcattggagccatgatgagaactgttcttcctgcattagctcaagcagttgtgttcaattctactccttatgagggactggtcgaaaacctgaaagattgtctgcaggtttatattctattcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="62175" stop="58918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61875" g_stop="61831" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61830" i_stop="61704" i_length="127">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61703" g_stop="61607" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="142" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61606" i_stop="60431" i_length="1176">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60430" g_stop="60328" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="245" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60327" i_stop="59357" i_length="971">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59356" g_stop="59218" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="384" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E330155" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61875" e_stop="61831"/>
          <exon e_start="61703" e_stop="61607"/>
          <exon e_start="60430" e_stop="60328"/>
          <exon e_start="59356" e_stop="59218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCAAAAGTACGAGAACTATACAACAGCCTCGGTGATCTTGGTAGGAACATTTATCATTTTATGTTGCTGGACAATTGATAGCACAAATTTTCATGTTTCTCCTTTCTTTGGTTTGCTTGGATTCTTCTTTAATGGGGCTGGACCTTGTTGACCCTAATTTGTATTAGGTGATGTTGCTCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAGGATAAGGTATGATTTTGACTCTTCTTTCTGGTTCTGACAGTTTGTCATTGCTGATCTTTTGATGAGAATGTATAGTCTTCTAGTATTCAGGATAGGCTTTTTTTACTGGTTTGACTCCTAGACCAGAGCCTATTGCCCCAGCCACATAGTCTCTTTTGTTACGTTAGCCGAAAATCCTTGGAATTTGAAAGAGAGAAAAAGTACATGACAAAATTACAGGCTAACCTCAGCAATGCACTTCTAAGTACACGACGGACTGTAATCCTGCATCATTTTCTTATCTTTTCTTTTAATGTCATGCGAATCCCTATCCTTCTTTTATGGCAAGTTTCTATTAGTATGCTATTGGATTTTATCTTATTCAGGGATAAAGTCTGTATAAGATGAAAAAGAACAGAACATTAGAATATGTTATCAGTTTCAGAAGTAAATGGTTGCTATCCATGGTCATGGAACTCGTTATTTGGTTCTGATCATTGTCTTTGTGACTTCTTTTTCTTTGTTTCGGGATTGGGCTGCATATCAGTTGGACTACTTTTTTTTTTTACTTCAGATGTAAGATTGACTTCATATATTTGGAGCTGTCCACCTTTTTCTGTCTGATTTCTGAAAAGTACCTCATGAATAAGATTCTATTATATAGAGAGGGAGATGCTATCCACTTTACTTGCAAATGTACAACTAGGATAGTTATCTTGAGCTCCACAACAACAACATACCCAGTGTAATCCGACACCTGCAGTTTGGGGCTCCTCATAGGGTGTATGTAGACCTTATCCCTACCTTTGTGGGGTAGAGAGATATGTTTTTGGTAGACCCTCGACTCAAGATTCGGTGGTTTGATCCAAGTATTATTAATATCTTGATTCTTATTCACATTCAATCTTGCATAAGATATCACATACATTCTCACATAACTTCTGCAGGTATTAGTTATGTGGAAAATAAATATTGGAAGCAAACAATGCTGAATAATTCTAATTTTAAAAATTAGCTTACCAAAATAAATGTCAAGTTTTGTGTGGAAAATAAAATGGAACAAAGACAATGTATTAACTATACGGAGCTTATTGTATTGAATAATACTTTTATGAATTTACCTCAATAATATATGTTTGCTCTACCTTTCTTGTCGTGCTGTAAGCTTGGTATGAAACCTTAATTTCCAATGCAATGCATCAGCTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGTCAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTGGTAAGTTTACGGTTTCAGTTTTCAAGGAATAAAATCCTTTCTTTGGTGTTGTAGGTCCATAAATGTGTAATAGTAATACTGATAAGAGCACTTCCCCAAAGTTCTATCGAATCCTGCAATATCTCATATTTAAATGGCATAAGCTAGTAAAGAATAACTTTCCAGAGTTACCCTTTTTTTAAAAAAAGAATTAACTTTCTAGATCTTTTTGCCCCCTTGCTCCCCTCAACCAGTTGGGTCTAGTTTGTTTTAAATTGCCCTTGTTGGCAAACTCAAACCTAATAGATTAGTATAATCACTGGAGTGTTGAGCTTTTATGTCCAATATCTGTCTTAATTTCATGCTTATTGCAGTAGTTTCTCTTCCCTCTTTCTCTGTTAAAGCATGGGTTAGTTTAAAAACTTATTTACATATTCCACAGTCGAAAGTTTGCTTCCTTTGTGCTCCCCATATAGCATCAGGTTATTGAAAAAGATTAAGCATCTTTAATGAAACTCTCTGCCATCCATAGTTCTCGATTGGTATCATTTCAGTATTGGCTTTAGGAGGAGCATGTAGTTTTGTGGATTAAGCGCCCAGGTCTTTGGTCTAGTGGTAAAAGTGTAGAGCATGAGTGTAGGTTAGGTGCACGTCATGTGTTCTCGAACCCTACCAAAAGCCTGATATTATAGTGGAGAAGGGTAGAATTTGGCTCATTATCTAGCGGGGTTCAAACCTTGTGCCACTGTCTCTAGGAGAGTTCACGGTCTTCAAATAAGAAAAAACGGTACAGTTTACACTAACTAATTATGACTTAGCTACCCATTGAGAACACTTTTAATCTAAATAAAGACCTAACCAAGCTCCTTTTCTTGTTCTGCCACTTTCAAAGTTCAAAATATGTTGACTTGTTGTGGAAGATGATGTGTGGTAGATTCTTGCCTTTTTCTTTAGCCATTTCAACTTTATTTACCTTTTCTGTTGCAAGTTAGGTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAGGTTTATATTCTATTCATCT</genome_strand>
        <mrna_strand>AGAAATCAAAAGTACGAGAACTATACAACAGCCTCGGTGATCTTG...............................................................................................................................GTGATGTTGCTCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAAGATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGTCAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAGGTTTATATTCTATTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703344" ref_strand="+" ref_description="SGN-E703344 [FA21BA02]">
      <seq>gatttagtccagaacgatttcaatactctatttaattacatccatggcaacaaacccaactacttcactacaggaatcccaggttctttctatggacgaatatttccaaaggcgttcctacactttgcccacagctcgatgtcacttctgtatctgtcaagaattccagaggaagtgttagacagaaactcagcagcatggaacaaaggaagaattcattacagtagcagtggagcagcaaaagaagtagaggcagcatatgcagatcagttcagaaaagatatacaagcctttttggatgcaagggctcaagagcttgttcctggaggattaatgaccatcattactcttactattcttgatggagtgcttccttctgactctcccatggccatcaatttcaccattcttggatcctgcctacaggatatggccaacatgggtattatgtctgaagaaaagttggattcgttcaaccttccatactattatacatctcctatggagttcgaaacactgataaagacacatggatgctttgatattataaggtttgagaagctgccaactcccctgagacaagttgtaattgatgtccaaactgcagtgttatctgtgcgagtagtaacagagcaactatttcagcaacactttgggaatgacatcactgaggaattgtttcaacgttacactgaaaaattagactcgcatccacttttaaaagatgataaatatcgcacagatgccagctactttgtctttctcaagcgtnaagccgaaacatccgaacgagagtcctagcttggttcttaaaacttatcatctgcgtccaaactttgttattgttcacctgtttgcagagtgtgatcttgttttatgtgtgcattttaattgttttctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="-" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="73533" stop="71877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73233" g_stop="73152" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73151" i_stop="73067" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73066" g_stop="72708" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="441" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72707" i_stop="72639" i_length="69">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72638" g_stop="72177" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="903" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="-" ref_id="SGN-E703344" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73233" e_stop="73152"/>
          <exon e_start="73066" e_stop="72708"/>
          <exon e_start="72638" e_stop="72177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAGTCCAGAACGATTTCAATACTCTATTTAATTACATCCATGGCAACAAACCCAACTACTTCACTACAGGAATCCCAGGTATGTATGTATATTTGTTACTACTTTGGTCTATTGGAAACAAAACAGTATAAATCAAACGACTGATATATCTACTATGGTGTAGGTTCTTTCTATGGACGAATATTTCCAAAGGCGTTCCTACACTTTGCCCACAGCTCGATGTCACTTCTGTATCTGTCAAGAATTCCAGAGGAAGTGTTAGACAGAAACTCAGCAGCATGGAACAAAGGAAGAATTCATTACAGTAGCAGTGGAGCAGCAAAAGAAGTAGAGGCAGCATATGCAGATCAGTTCAGAAAAGATATACAAGCCTTTTTGGATGCAAGGGCTCAAGAGCTTGTTCCTGGAGGATTAATGACCATCATTACTCTTACTATTCTTGATGGAGTGCTTCCTTCTGACTCTCCCATGGCCATCAATTTCACCATTCTTGGATCCTGCCTACAGGATATGGCCAACATGGTAATTAAATAACTGATTCTCAGTTTTCACATGAACTTGAAGTGTGAAATGACTTGACATCCAATGCAGGGTATTATGTCTGAAGAAAAGTTGGATTCGTTCAACCTTCCATACTATTATACATCTCCTATGGAGTTCGAAACACTGATAAAGACACATGGATGCTTTGATATTATAAGGTTTGAGAAGCTGCCAACTCCCCTGAGACAAGTTGTAATTGATGTCCAAACTGCAGTGTTATCTGTGCGAGTAGTAACAGAGCAACTATTTCAGCAACACTTTGGGAATGACATCACTGAGGAATTGTTTCAACGTTACACTGAAAAATTAGACTCGCATCCACTTTTAAAAGATGATAAATATCGCACAGATGCCAGCTACTTTGTCTTTCTCAAGCGTAAAGCCGAAACATCCGAACGAGAGTCCTAGCTTGGTTCTTAAAACTTATCATCTGCGTCCAAACTTTGTTATTGTTCACCTGTTTGCAGAGTGTGATCTTGTTTTATGTGTGCATTTTAATTGTTTTCTGCA</genome_strand>
        <mrna_strand>GATTTAGTCCAGAACGATTTCAATACTCTATTTAATTACATCCATGGCAACAAACCCAACTACTTCACTACAGGAATCCCAG.....................................................................................GTTCTTTCTATGGACGAATATTTCCAAAGGCGTTCCTACACTTTGCCCACAGCTCGATGTCACTTCTGTATCTGTCAAGAATTCCAGAGGAAGTGTTAGACAGAAACTCAGCAGCATGGAACAAAGGAAGAATTCATTACAGTAGCAGTGGAGCAGCAAAAGAAGTAGAGGCAGCATATGCAGATCAGTTCAGAAAAGATATACAAGCCTTTTTGGATGCAAGGGCTCAAGAGCTTGTTCCTGGAGGATTAATGACCATCATTACTCTTACTATTCTTGATGGAGTGCTTCCTTCTGACTCTCCCATGGCCATCAATTTCACCATTCTTGGATCCTGCCTACAGGATATGGCCAACATG.....................................................................GGTATTATGTCTGAAGAAAAGTTGGATTCGTTCAACCTTCCATACTATTATACATCTCCTATGGAGTTCGAAACACTGATAAAGACACATGGATGCTTTGATATTATAAGGTTTGAGAAGCTGCCAACTCCCCTGAGACAAGTTGTAATTGATGTCCAAACTGCAGTGTTATCTGTGCGAGTAGTAACAGAGCAACTATTTCAGCAACACTTTGGGAATGACATCACTGAGGAATTGTTTCAACGTTACACTGAAAAATTAGACTCGCATCCACTTTTAAAAGATGATAAATATCGCACAGATGCCAGCTACTTTGTCTTTCTCAAGCGTNAAGCCGAAACATCCGAACGAGAGTCCTAGCTTGGTTCTTAAAACTTATCATCTGCGTCCAAACTTTGTTATTGTTCACCTGTTTGCAGAGTGTGATCTTGTTTTATGTGTGCATTTTAATTGTTTTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389939" ref_strand="+" ref_description="SGN-E389939 [TUS-4-O12]">
      <seq>caaaatccaatattttcattacaagactatctcttcttcttcttctttttttctctaatccaaaaaagctcaaatcttgtactatgggtaactatatttcttgcactttatcagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaaatcaattctcttttgaattttagaaaggagaaattattcttttttaaagattaggatatgatttacatttatcatttaaattcacaattctgttgntttttttttatattcaattgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90125" stop="91446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90416" g_stop="91146" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E389939" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90416" e_stop="91146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTT-AATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTT</genome_strand>
        <mrna_strand>CAAAATCCAA-TATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAAATCAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTTAAAGATTAGGATATGATTTACATTTATCATTTAAATTCAC-AATTCTGTTGNTTTTTTTTTATATTCAATTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392232" ref_strand="+" ref_description="SGN-E392232 [TUS-36-G10]">
      <seq>caaaaacaaaatattttcattataagactatctcatcttcttcttctttttttctctaatccaaaaaagctcaaatcttgtactatgggtaactatatttcttgcactttatcagggcaaggatgcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcatagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcatacaaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccattttgtttaaaatgaggattttgaacaaaatttaattaattcaaattctctttttgaattttagaaaggaaaatttattctttttaaaaaaataggaaatgatttacttttatcaattaattcacaattccggttgtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90116" stop="91428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90416" g_stop="91128" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E392232" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90416" e_stop="91128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTC-TTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTT</genome_strand>
        <mrna_strand>CAAAAACAAAATATTTTCATTATAAGACTATCTCATCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCAAGGATGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCATAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCATACAAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCATTTTGTTTAAAATGAGGATTTTGAACAAAATTTAATTAATTCAAATTCTCTTTTTGAATTTTAGAAAGGAAAATTTATTCTTTTTAAAAAAATAGGAAATGATTTACTTTTATCAATTAATTCACAATTCCGGTTGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550050" ref_strand="+" ref_description="SGN-E550050 [TUS-5-O12]">
      <seq>caaaacaaaatattttcattacaagactatctcttcttcttcttctttttttctctaatcctaaacagctcaaatcttgtactatgggtaactatatttcttgcactttatcagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttagaaaggagaaattattctttttaaagattangatatgatttacatttatcatttaattcacaaattctgttgttttttttttatattcaatggatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90118" stop="91450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90417" g_stop="91150" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E550050" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90417" e_stop="91150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTT</genome_strand>
        <mrna_strand>CAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCTAAACAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTT-AAAGATTANGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATGGATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375083" ref_strand="+" ref_description="SGN-E375083 [TUS-36-G9]">
      <seq>aaaaacaaaatattttcattacaagactatctcttcttcttcttctttttttctctaatccaaaaaagctcaaatcttgtactatgggtaactatatttcttgcactttatcagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttagaaaggagaaattattctttttaaaagattaggatatgatttacatttatcatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90117" stop="91404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90417" g_stop="91104" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E375083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90417" e_stop="91104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAA</genome_strand>
        <mrna_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378061" ref_strand="+" ref_description="SGN-E378061 [TUS-21-L16]">
      <seq>aaaaacaaaatattttcattacaagactatctcttcttcttcttctttttttctctaatccaaaaaagctcaaatcttgtactatgggtaactatatttcttgcactttatcagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttagaaaggagaaattattctttttaaaagattaggatatgatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90117" stop="91392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90417" g_stop="91092" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E378061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90417" e_stop="91092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACA</genome_strand>
        <mrna_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235584" ref_strand="+" ref_description="SGN-E235584 [cLED-11-N2]">
      <seq>aaaaacaaaatattttcattacaagactatctcttcttcttcttctttttttctctaatccaaaaaagctcaaatcttgtactatgggtaactatatttcttgcactttatcagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttagaaaggagaaattattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90117" stop="91367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90417" g_stop="91067" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E235584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90417" e_stop="91067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTT</genome_strand>
        <mrna_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233148" ref_strand="+" ref_description="SGN-E233148 [cLED-6-E2]">
      <seq>aaaaacaaaatattttcattacaagactatctcttcttcttcttctttttttctctaatccaaaaaagctcaaatcttgtactatgggtaactatatttcttgcactttatcagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90117" stop="91271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90417" g_stop="90971" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E233148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90417" e_stop="90971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTA</genome_strand>
        <mrna_strand>AAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354508" ref_strand="+" ref_description="SGN-E354508 [cTOS-17-C17]">
      <seq>tcttcttcttcttctttttttctctaatccaaaaaagctcaaatcttgtactatgggtaactatatttcttgcactttatcagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttagaaaggagaaattattctttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90148" stop="91383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90448" g_stop="91085" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E354508" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90448" e_stop="91085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATG</genome_strand>
        <mrna_strand>TCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389680" ref_strand="+" ref_description="SGN-E389680 [TUS-4-O12](-)">
      <seq>cagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttagaaaggagaaattattctttttaaaagattaggatatgatttacatttatcatttaattcacaaattctgttgttttttttttatattcaattgattttttttgagtgaggctaagattgaaggatcgagagctgaactgagtattggggacataaagaaagtctatgggaatttaaatttttaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90228" stop="91538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90528" g_stop="91238" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E389680" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90528" e_stop="91238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAACTTTTGTATTGGGGACATAAAGAAAGTCTATGGTAATTGTAAATTTTTTAACTT</genome_strand>
        <mrna_strand>CAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAAC-TGAGTATTGGGGACATAAAGAAAGTCTATGGGAATT-TAAA-TTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550384" ref_strand="+" ref_description="SGN-E550384 [TUS-5-O12](-)">
      <seq>cagggccaggaggcaacaaagaatcaagagggataaaagttatattcccatgtggtgaaattaggcatttttatgaaccgattaaagcagcagagattatgatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgtttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaagagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttagaaaggagaaattattctttttaaaagattaggatatgatttacatttatcatttaattcacaaattctgttgttttttgtttatattcaattgattttttttgagtgaggctaagattgaaggatcgagagctgaacgtatgtattggggacatatctagagtctagataattgtaaatttttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90228" stop="91503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90528" g_stop="91237" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E550384" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90528" e_stop="91237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCG-TTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAACTTTTGTATTGGGGACATAAAGAAAGTCTATGGTAATTGTAAATTTTTTAACT</genome_strand>
        <mrna_strand>CAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTGTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAACGTATGTATTGGGGACATATCTAGAGTCTA-GATAATTGTAAA-TTTTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378060" ref_strand="+" ref_description="SGN-E378060 [TUS-21-L16](-)">
      <seq>gatggaaactcctaatttctttcttgtgaacactcgatcacttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaaaagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaaaagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaaaaagcccttgttggaaactattgctgaagaaccagtttgtttaaaatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttaaaaaggagaaattattctttttaaaagattaggatatgatttacatttatcatttaattcccaaattctgttgttttttttttatattcaattgattttttttgagtgaggctaagattgaaggatcgagagctgaacttttgtattggggacataaaaaaagtctatggtaattgtaaattttttaactttgtgaaaatattttataacctaaaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90328" stop="91572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90628" g_stop="91269" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="660"/>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E378060" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90628" e_stop="91269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAACTTTTGTATTGGGGACATAAAGAAAGTCTATGGTAATTGTAAATTTTTTAACTTTGTGAAAATATTTTATAACATAAAAGAAAAA</genome_strand>
        <mrna_strand>GATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAAAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAAAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAAAAGCCCTTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAAATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAAAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCCCAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAACTTTTGTATTGGGGACATAAAAAAAGTCTATGGTAATTGTAAATTTTTTAACTTTGTGAAAATATTTTATAACCTAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375082" ref_strand="+" ref_description="SGN-E375082 [TUS-36-G9](-)">
      <seq>ctcgatcccttcatattggaaggagattttctgcgttaaatgcagacgaagatcttgaaatgggaaatgtttatgttatgtttccgatgaaaagagtgaattcttttgtatcagcaggtgatatgggtgctctgttacttactgcgaactctgtttccaaaagggtgtcaatagggagtttaagaatcttgcctgaaaagaattattgtactttgcctaagttgaatttggatgatattgaagatttttcaagtgaagaatttaagcataggttatctatgtgtagatcgaagaagccattgttggaaactattgctgaagaaccagtttgtttaagatgaggattttgaacaaaattttattaaatcaaattctcttttgaattttaaaaaggagaaattattctttttaaaagattaggatatgatttacatttatcatttaattcccaaattctgttgttttttttttatattcaattgattttttttgagtgaggctaagattgaaggatcgagagctgaacttttgtattggggacataaagaaagtctatggtaattgtaaattttttaactttgtgaaaatattttataacataaaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="90360" stop="91572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90660" g_stop="91269" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="628"/>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E375082" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90660" e_stop="91269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAACTTTTGTATTGGGGACATAAAGAAAGTCTATGGTAATTGTAAATTTTTTAACTTTGTGAAAATATTTTATAACATAAAAGAAAAA</genome_strand>
        <mrna_strand>CTCGATCCCTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAAAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAAAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCCCAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAACTTTTGTATTGGGGACATAAAGAAAGTCTATGGTAATTGTAAATTTTTTAACTTTGTGAAAATATTTTATAACATAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320638" ref_strand="+" ref_description="SGN-E320638 [cTOB-27-E9]">
      <seq>tcaactcctccaacgtacatcacactcctctctctcccttcctcttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98617" stop="100185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98917" g_stop="99195" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99885" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="395" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E320638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98917" e_stop="99195"/>
          <exon e_start="99770" e_stop="99885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCCTCCAACGTACATCACACTCCTCTCTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTG</genome_strand>
        <mrna_strand>TCAACTCCTCCAACGTACATCACACTCCTCTCTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339629" ref_strand="+" ref_description="SGN-E339629 [cTOE-16-L10]">
      <seq>tcctctctctcccttcctcttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98642" stop="101019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98942" g_stop="99195" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="380" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100719" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="543" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E339629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98942" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACT</genome_strand>
        <mrna_strand>TCCTCTCTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726248" ref_strand="+" ref_description="SGN-E726248 [LA11BB01]">
      <seq>ctctcccttcctcttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtccctcctgggggattattggtaattacttcatgtaatagtacaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98648" stop="103860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98948" g_stop="99195" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="374" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="575" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="672" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="776" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="828" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103532" g_stop="103560" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="857" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E726248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98948" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGA</genome_strand>
        <mrna_strand>CTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCCCTCCTGGGGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701190" ref_strand="+" ref_description="SGN-E701190 [FA15BB03]">
      <seq>ctctcccttcctcttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggggggattattggtaattacttcctgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98648" stop="103525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98948" g_stop="99195" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="374" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="575" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="672" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="776" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="829" r_length="53" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E701190" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98948" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCT-GGTGGATTATTG</genome_strand>
        <mrna_strand>CTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGGGGGATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297364" ref_strand="+" ref_description="SGN-E297364 [cLEW-10-E9]">
      <seq>tcccttcctcttctctttacggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcacgaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaacgcttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcatcgtgagattgacatttcangttggagtgtgcttgatattgggactggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98651" stop="101025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98951" g_stop="99195" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="371" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100725" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="540" r_length="169" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E297364" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98951" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAAT</genome_strand>
        <mrna_strand>TCCCTTCCTCTTCTCTTTACGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCACGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAACGCTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCATCGTGAGATTGACATTTCANGTTGGAGTGTGCTTGATATTGGGACTGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322801" ref_strand="+" ref_description="SGN-E322801 [cTOB-30-C12]">
      <seq>tcccttcctcttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtccactggtgaaatttggtttggtggtgacggtatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98651" stop="100960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98951" g_stop="99195" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="370" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100660" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="474" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E322801" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98951" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTG</genome_strand>
        <mrna_strand>TCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTC-CACTGGTGAAATTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGGTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336870" ref_strand="+" ref_description="SGN-E336870 [cTOE-5-G20]">
      <seq>tcccttcctcttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98651" stop="100950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98951" g_stop="99195" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="371" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100650" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="465" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E336870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98951" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGAT</genome_strand>
        <mrna_strand>TCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309382" ref_strand="+" ref_description="SGN-E309382 [cLEY-22-M6]">
      <seq>ttcctcttctctttagggtttttcatctcgattcatacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98655" stop="103107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98955" g_stop="99195" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="366" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="567" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="664" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102807" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="715" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E309382" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98955" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATG</genome_strand>
        <mrna_strand>TTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCAT-ACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344876" ref_strand="+" ref_description="SGN-E344876 [cTOF-21-H7]">
      <seq>gcctcttctctttagggtttttcatctcgattcatacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacagggttctctgatctcactgggactgactatagtgagggagcagttgaccttgcaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98657" stop="102458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98956" g_stop="99195" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="365" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="565" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102158" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="621" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E344876" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98956" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAA</genome_strand>
        <mrna_strand>GCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCAT-ACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAAC-AGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGGACTGACTATAGTGAGGGAGCAGTTGACCTTGCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703644" ref_strand="+" ref_description="SGN-E703644 [FA22AC09]">
      <seq>ctcttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcnaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98658" stop="103884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98958" g_stop="99195" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="364" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="565" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="662" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="766" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="818" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103532" g_stop="103584" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="871" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E703644" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98958" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATAC</genome_strand>
        <mrna_strand>CTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCNAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699599" ref_strand="+" ref_description="SGN-E699599 [FA10CE11]">
      <seq>cttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatgggataggggaccttagatgccattggattgcatcctgatggtcctatcaaagggattatctactgggactctgtttcaaggcttgtcgctcctgggggattattgggaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98660" stop="103514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98960" g_stop="99195" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="362" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="563" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="660" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="764" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="816" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E699599" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98960" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG</genome_strand>
        <mrna_strand>CTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGGATAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAGG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGGGGATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725845" ref_strand="+" ref_description="SGN-E725845 [LA05DH11]">
      <seq>cttctctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatcttgcagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactgggcatggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98660" stop="101031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98960" g_stop="99195" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="362" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100731" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="537" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E725845" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98960" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACAT-TTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTG</genome_strand>
        <mrna_strand>CTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATCTTGC-AGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGGCATGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367251" ref_strand="+" ref_description="SGN-E367251 [cLPT-5-K14]">
      <seq>tctttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccaacggcatcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgtcatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtaatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98664" stop="100989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98964" g_stop="99195" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="358" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100689" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="491" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E367251" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98964" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATT</genome_strand>
        <mrna_strand>TCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAACGGCATCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTCATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTAATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264789" ref_strand="+" ref_description="SGN-E264789 [cLEG-71-L11]">
      <seq>ttagggtttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttgggtggtgnacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcagggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagttgaaggagcagttgaccttgcaagaagccttgctggatcgtgatggtttcaccaatgtcaaggttcttggttgatgacattcttgagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98667" stop="103078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98967" g_stop="99195" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99897" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="357" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99898" i_stop="100556" i_length="659">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="559" r_length="202" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="659" r_length="100" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102778" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="681" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E264789" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98967" e_stop="99195"/>
          <exon e_start="99770" e_stop="99897"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTG-ACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCA-GGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAG-TGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCT-GATCGTGATGGTTTCACCAATGTCAA-GTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAA</genome_strand>
        <mrna_strand>TTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TTGGGTGGTGNACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGGATCGTGATGGTTTCACCAATGTCAAGGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697623" ref_strand="+" ref_description="SGN-E697623 [FA03CE06]">
      <seq>tttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttanatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98673" stop="103512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98973" g_stop="99195" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="349" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="550" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="647" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="751" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="803" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E697623" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98973" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG</genome_strand>
        <mrna_strand>TTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTANATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337742" ref_strand="+" ref_description="SGN-E337742 [cTOE-17-P6]">
      <seq>tttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98673" stop="102434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98973" g_stop="99195" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="349" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="550" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102134" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="582" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E337742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98973" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTG</genome_strand>
        <mrna_strand>TTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284593" ref_strand="+" ref_description="SGN-E284593 [cLES-3-M21]">
      <seq>tttttcatctcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98673" stop="100923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98973" g_stop="99195" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="349" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100623" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="416" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E284593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98973" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAG</genome_strand>
        <mrna_strand>TTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702861" ref_strand="+" ref_description="SGN-E702861 [FA19DF03]">
      <seq>ctcgattcatccacatggccgggatgagactgttaccggaggaccccgacgtcgcgcgggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccatagagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccgaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccgatgtcaagttcttgggtgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcagaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattgggaattacttcatgcaatagtacaaaagatgaattggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98681" stop="103871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98981" g_stop="99195" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="340" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="541" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="638" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="742" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="794" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103532" g_stop="103571" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="834" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E702861" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98981" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAG</genome_strand>
        <mrna_strand>CTCGATTCATC-CACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCGGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAGAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCGAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCGATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAGAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GGAATTACTTCATGCAATAGTACAAAAGATGAATTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301679" ref_strand="+" ref_description="SGN-E301679 [cLEW-23-P13]">
      <seq>tcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98682" stop="102472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98982" g_stop="99195" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="340" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="541" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102172" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="611" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E301679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98982" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGT</genome_strand>
        <mrna_strand>TCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341451" ref_strand="+" ref_description="SGN-E341451 [cTOE-23-M7]">
      <seq>tcgattcatcacacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98682" stop="102433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98982" g_stop="99195" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="340" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="541" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102133" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="572" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E341451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98982" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGT</genome_strand>
        <mrna_strand>TCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314816" ref_strand="+" ref_description="SGN-E314816 [cTOA-20-P3]">
      <seq>acacatggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccnatgtcaagttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98692" stop="102499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98992" g_stop="99195" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="330" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="531" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="628" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E314816" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98992" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG</genome_strand>
        <mrna_strand>ACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCNATGTCAAGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724700" ref_strand="+" ref_description="SGN-E724700 [FC24DF11]">
      <seq>ggccgggatgagactgttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgttcagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttaaatgccattggattgcatcctgatggtcctatcaaaaggattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98698" stop="103165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98998" g_stop="99195" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="324" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="525" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="622" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="726" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103161" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="733" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E724700" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98998" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATC</genome_strand>
        <mrna_strand>GGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTTCAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAAATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255874" ref_strand="+" ref_description="SGN-E255874 [cLEG-35-H11]">
      <seq>ggatgagactgtttccggaggacggggacttttcgcaggtccgaccagcggcagcagccgatctgatttccgacgaccaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctagatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtaactgatgccgattcttgagcctgttgggcagcgtgagattgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98729" stop="100989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99003" g_stop="99195" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="319" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100689" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="453" r_length="134" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E255874" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99003" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTC-TGAGCCTGTTGGGCAGCGTGAGATTGACATT</genome_strand>
        <mrna_strand>GGATGAGACTGTTTCCGGAGGACGGGGACTTTTCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACCACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTAGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAACTGATGCCGATTCTTGAGCCTGTTGGGCAGCGTGAGATTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731592" ref_strand="+" ref_description="SGN-E731592 [LA27CD07]">
      <seq>gttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatggtatagtacaaaagatgaattggtagaagaagtggatactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98713" stop="103888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99013" g_stop="99195" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="309" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="510" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="607" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="711" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="763" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103532" g_stop="103588" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="820" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E731592" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99013" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTC</genome_strand>
        <mrna_strand>GTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGGTATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731672" ref_strand="+" ref_description="SGN-E731672 [LA27DD07]">
      <seq>gttaccggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98713" stop="103476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99013" g_stop="99195" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="309" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="510" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="607" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="711" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103155" g_stop="103176" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="733" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E731672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99013" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTT</genome_strand>
        <mrna_strand>GTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303120" ref_strand="+" ref_description="SGN-E303120 [cLEX-5-M3]">
      <seq>ggaggaccccgacgtcgcgcaggtccgaccagcggcagcagccgatctgatttccgacgacgaccgctctgtggcggccgattcgtggtccataaagagcgaatacggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98719" stop="101026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99019" g_stop="99195" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="303" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100726" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="473" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E303120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99019" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATG</genome_strand>
        <mrna_strand>GGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298318" ref_strand="+" ref_description="SGN-E298318 [cLET-41-C16]">
      <seq>acggaagtactctcgatgatgagcagcgccacgctgatgctactgaagctcttaactaccgagccgattacagttctgacaaggatgagcaggaaggtgaaggagtttcttcaatgcttggtttccaaagctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="98823" stop="103099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99123" g_stop="99195" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99770" g_stop="99895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="199" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="400" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="497" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102757" g_stop="102799" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="540" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E298318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99123" e_stop="99195"/>
          <exon e_start="99770" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAGGTTCTTTCTTATATGGAGAGCATTAACTTCAGTCTTATTCATATGACTGTGACTGACTACATTTTTTTTTTTTAAAAAAACTTTAGATAGTACTCCACCGGTTAAATTTAGTGTAGAAAAATAAATCATTCAAAGTTTAAGAAGTTGTATAGTTAAAAGAATTGGAATAATTGAAAGTTGTGTGAAGATTATGTAGAATAATACTATTTTTTTAATGATGTCAAATATTTTGATAACTATAATATGAAGAAGTGTTTTATGTATTAGGATGGAGAAAACATAACCTGCATGAAGGTGTAACTTTATCAAATTATGATTACTTTTCTCTTATCCATTATTGAGCTATAGAACACTATGGCAGAGCTAAGTAGTGGTGGTAATTAGAGGTCAATATATCTGTTGAGTGCACTTTGTAACTTTAAGTGAATAAAGTGATAACTGCAGTCTTCATTGGGCGTTGTATACAGTTGTTAGAAGAGATTATCCATTAGAAATCCGCTCATATTATATTTTGCTTGTTGATTGTGAAGAAGGTTTACTAACTTCTTTTTCTTACTTTTTTGCATACGAGCAGTTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGC</genome_strand>
        <mrna_strand>ACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275108" ref_strand="+" ref_description="SGN-E275108 [cLEN-9-G18]">
      <seq>gctattgggatgctgcttacgccgatgaattgacaaactttcgtgagcatggtcacactggtgaagtttggtttggtggtgacgttatggaaaatgttgtctcatggaccaaaggtttgtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="99526" stop="103161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99826" g_stop="99895" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100557" g_stop="100757" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="271" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="368" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="472" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103155" g_stop="103159" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="477" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E275108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99826" e_stop="99895"/>
          <exon e_start="100557" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGTATGGATTAGCTAGACGGCAGCTTGGAATTTTTTTCCCTCTTCCTTGATCCACTTTACTATTGTGTTATCCTCGTTCTTTTAATTGTGATACTACCTATCAATCAATAAACTATCCCTCTTCCATCTCAAATAAAATCGGGTCCGTTATATGAATCTTTGGGAGCTATTCTATGCCATCTTGATCCAAATCCTTCCTATACTATGTTACATAAAACAATATGCCATTTAAGGCAAATTAGGAGTTCTCTAAAATGCCTTTTATGTATAGAAAATCTACAGCCTAGCACTTTTGATGATTGGCTGGAGTAAAGCTAAATTTAGCTCTTTGTGATAGTTTTATCCCACTAATAGATAATGATCGTTTTATCCCACTTTGTGATATGTGGTTGGGAGCTATGGAGCGGGGTTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAAAGAAAAGATAATGATAATAATTTGCCTGATCTTTCTTTCTGTCCTTTTAGTCTTCATACAAGGTTAACATTCCAATTCCCAAATAGGAATCCAGGAAAAGAAGTGAGAGGGTGGTGCTCCCATCACTGGATCACTATGTTGGTCAAAACAGTTTTGTTGATGTGTATGTTTTTGCTGTATTTGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTA</genome_strand>
        <mrna_strand>GCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553742" ref_strand="-" ref_description="SGN-E553742 [cTSC-2-B17]">
      <seq>agtttggtttggtggtgacgttatggaaaaagttgtcttcatggaccaaaaggtttgtgcatggacattgcaaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatactctcaatcaaagaagggttgcttgtcaaagaccaggaacagtcgaagcctcagtagatcctcctcctttccgctatctcgatcacgttcgcacatatcctacattcacatttggaggatccgtaggctcgcgtgtagcaactgtagcattcctaaggaactgaattattactttctcatcattttgggtgcatcactgcactttttttgtaacgtcgtgcaaccgtggagtgtttctttgggaagaccatttctgatttatgcaaggtgaaagattaattgatctagtttttgtatagggggtaacgttagtgctacattaacaacgttgatcatcagatgactcgtgttagatggaaaaattgttcttcaagtcaatgttatgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100251" stop="104272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100550" g_stop="100757" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="306" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="410" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="462" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103532" g_stop="103972" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="903" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E553742" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553742" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100550" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTC-TCATGGACC-AAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTGCAACCGTGGAGTGTTTCTTTGGGAAGACCATTTCTGATTTATGCAAGGTGAAAGATTAATTGATCTAGTTTTTGTATAGGGGGTAACGTTAGTGCTACATTAACAACGTTGATCATCAGATGACTCGTGTTAGATGGAAAAATTGTTCTTCAAGTCAATGTTATGTCAC</genome_strand>
        <mrna_strand>AGT-TTGGTTTGGTGGTGACGTTATGGAAAAAGTTGTCTTCATGGACCAAAAGGTTTGTGCATGGACATTGCAAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTGCAACCGTGGAGTGTTTCTTTGGGAAGACCATTTCTGATTTATGCAAGGTGAAAGATTAATTGATCTAGTTTTTGTATAGGGGGTAACGTTAGTGCTACATTAACAACGTTGATCATCAGATGACTCGTGTTAGATGGAAAAATTGTTCTTCAAGTCAATGTTATGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327354" ref_strand="+" ref_description="SGN-E327354 [cTOC-19-P6]">
      <seq>gtgcatggacatttgcaagagtcatttgccaaatcacgtagctgatgccgattctgagcctgttgggcagcgtgagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatactctcaatcaaagaagggttgcttgtcaaagaccaggaacagtcgaagcctcagtagatcctcctcctttccgctatctcgatcacgttcgcacatatcctacattcacatttggaggatccgtaggctcgcgtgtagcaactgtagcattccctaggaaactgaatattactttctcatcattttgggtgcatcactgcacttttttttgtacgtcgtgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100305" stop="104106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100605" g_stop="100757" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="250" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="354" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="406" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103532" g_stop="103806" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="681" r_length="275" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E327354" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100605" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATT-CCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTGCAA</genome_strand>
        <mrna_strand>GTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCCTAGGAAACTGAA-TATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTTGTACGTCGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288078" ref_strand="+" ref_description="SGN-E288078 [cLES-7-A1]">
      <seq>gattctgagcctgttgggcagcgtgagattgacatttcatgttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatactctcaatcaaagaagggttgcttgtcaaagaccaggaacagtcgaagcctcagtagatcctcctcctttccgctatctcgatcacgttcgcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100354" stop="103980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100654" g_stop="100757" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="201" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="305" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="357" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103532" g_stop="103680" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="506" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E288078" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100654" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATA</genome_strand>
        <mrna_strand>GATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCATGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240828" ref_strand="+" ref_description="SGN-E240828 [cLED-24-N5]">
      <seq>gagattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatgctgatggtcctatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100378" stop="103159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100678" g_stop="100757" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="177" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102859" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="280" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E240828" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100678" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAA</genome_strand>
        <mrna_strand>GAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATGCTGATGGTCCTATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368069" ref_strand="+" ref_description="SGN-E368069 [TUS-22-C22]">
      <seq>agattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatactctcaatcaaagaagggttgcttgtcaaagaccaggaacagtcgaagcctcagtagatcctcctcctttccgctatctcgatcacgttcgcacatatcctacattcacatttggaggatccgtaggctcgcgtgtagcaactgtagcattcctaaggaactgaattattactttctcatcattttgggtgcatcactgcacttttttttgaacgtcgtgcaaccgtggagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100379" stop="104118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100679" g_stop="100757" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="176" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="280" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103532" g_stop="103818" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="619" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E368069" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100679" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTGCAACCGTGGAGTGTT</genome_strand>
        <mrna_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTTGAACGTCGTGCAACCGTGGAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242946" ref_strand="+" ref_description="SGN-E242946 [cLED-31-L19]">
      <seq>agattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatactctcaatcaaagaagggttgcttgtcaaagaccaggaacagtcgaagcctcagtagatcctcctcctttccgctatctcgatcacgttcgcacatatcctacattcacatttggaggatccgtaggctcgcgtgtagcaactgtagcattcctaaggaactgaattattactttctcatcattttgggtgcatcactgcactttttttgtaacgtcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100379" stop="104103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100679" g_stop="100757" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="176" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="280" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103532" g_stop="103803" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="604" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E242946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100679" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTG</genome_strand>
        <mrna_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238487" ref_strand="+" ref_description="SGN-E238487 [cLED-17-I21]">
      <seq>agattgacatttcaggttggagtgtgcttgatattgtgactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgngactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatactctcaatcaaagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100379" stop="103900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100679" g_stop="100757" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="176" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="280" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103532" g_stop="103600" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="401" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E238487" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100679" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGG</genome_strand>
        <mrna_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGTGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGNGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238480" ref_strand="+" ref_description="SGN-E238480 [cLED-17-G21]">
      <seq>agattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatactctcaatcaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100379" stop="103898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100679" g_stop="100757" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="176" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="280" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103532" g_stop="103598" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="399" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E238480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100679" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAA</genome_strand>
        <mrna_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227134" ref_strand="+" ref_description="SGN-E227134 [cLED-1-L18]">
      <seq>agattgacatttcaggttggagtgtgcttgatattgggactggcaatggtctgcttctccaagagcttgctaaacaagggttctctgatctcactggaactgactatagtgaaggagcagttgaccttgcaagaagccttgctgatcgtgatggtttcaccaatgtcaagttcttggttgatgacattcttgagacaaaattggataaaaggtttcagctagttatggataaggggaccttagatgccattggattgcatcctgatggtcctatcaaaaggattatctactgggactctgtttcaaggcttgtcgctcctggtggattattggtaattacttcatgtaatagtacaaaagatgaattggtagaagaagtggatactctcaatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="100379" stop="103896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100679" g_stop="100757" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102103" g_stop="102199" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="176" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102757" g_stop="102860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="280" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103155" g_stop="103206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103532" g_stop="103596" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="397" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E227134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100679" e_stop="100757"/>
          <exon e_start="102103" e_stop="102199"/>
          <exon e_start="102757" e_stop="102860"/>
          <exon e_start="103155" e_stop="103206"/>
          <exon e_start="103532" e_stop="103596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGGGTAAATTTGAATTTCATGCTAGCAATACATCTAGTTAGCTATTTGCTTTGTTGGACATTCTGTAACTGATAGATGAGATTTCTTGTCCGAGATGCTTTTGATGCACATGCTCTATAATCCGTTACAGAGCCACACTGTAAGGTGAAAACTTTTGTGGATTGCCTAGTTCATTGAGTATTAAGAAGTTAGCTGTTGTGAAGGTTTGTTTATGACTTTTTAACCATTTATCACATGCCCTGTTAGATGATAAACTTTTTCATCATAAAATTATTTTACTGCTAGAGAATCAATAGAAGGTACAGAGTATTAAGCAGTTAGCTGTTGTAAAGGTTTGTTTACGGTTCTTTTAACCATTTATCACATGACCTGCTAGATCAACTTTTTCACCATAAACGTATCTATTAGAGATCCAATGGAAGGTATGAAAGATATATTCTTTTGTTCCCTTTTCTTGTGACGCGATTTGATTTGGGAGATCACAGTTGATAAAATGCTTCTTTTTTTTTTCAAAAGAAAAATGTTTGTAATTGATTTATATGATTAAGTGTTAGTGAAAGAAATAGTTGAAAAGTTGTTTCCAGTGAAAATCATCTAGTGTAAATTTGATTTGTTAAATGAATTTAATTAGTGAATCTCTAAAATTCAGTAAGGCTGTATTACATGATTATTTTAGTCTAATTGTTACGAACATAGGATATCCATGATGGAATGAGCCCCATAAATTATGAAGTGGATGGCAGAGAGATTATCAAGAAAAACTGTAGAGACTGTCAGGCGATGATTAATAGAAGAACAAAACCGTTATAAGATGAATTATGAATTTTTCCTTCAAGTCAAATAATTCTTTTCTCATACTGGCTTACCCTGTGCCATTACTTCTTTCCAATCCCAATACGTCCTTGTTTAGAGGTTCTTTGGTCTTTAACTGCAGGCACAAAACCTAGTTAGCTAATGCGGATATATTTTAATAATTCTTTGTGAGAGAACAAGCGTATGTAGTTTTAATGGTATTATACTTACATCGCATCATGCAGTTCAAATTAGCATGTGCATTCCTGCGGCTTGTGCTGGGGTGGAAACATCTCACTGCCTCTTGTGATTAATATAACTTAGGAGATTATACGTCTTTCTTATCACATCTACATCTTTGAGCTTGTACAAAAAGTGCTCAGGTCTTGTGATATTTAAAACCTACTAGTTGCTTCTTGGGAGTATTTGTCTGTTAAGAAATTTTATTTAATTTTTAGTGTCACGCGTTCTTGATGTATATGCCTTCTGGGGGGCGGTGGTGGGGGGGACCCGAAGATTATTACTTACTAATACTCATTTTTAACTATGGCGTTAGGTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTGGTAAAATTTGCCTTTGTCTTCCAATTAAGCAAATGTATAATATACCCACAGCAGCATCTGAGTCCAGTGTAAAAAAAAAAAGGGAAGTAGTAAACACGTGCTTCTCTAGATTGCATTCAAAATCTTGTGGCAAATAACTGTCTTTCTACTATGTTCTTAATGTTAAGCAGCGTCTTTTATTCTTCGTTGTTGGTAACCTGTTACTGTCTGGTGGCTGCATATACAGATAGTAGCAAGTTAAATTACTTCTACTTCTGAATGTTTTCCCTTAATCCTGACATTTTCAATTGTCTGCATGGAATGAACCTTTATTATATTTCTGTATTGAAAGATATAGCACTTATTATGTATTTAAGTGATCAAGGGTAGGATCAAGGTGCTAAATTAATGCCTAATTTTTGCATAGGGGTAGACTCTGTCTTACAAATTGCGATCAACGATTTTATTAGTTTCATGTCCTTGTCATGTGTGCTTATTTATCCATCCATATCTGTGCTCTCATTGCTGGAGATGGCTTCTTTAGTTTTGTGGTTAAATAAATTTCTATTGGCTAACAGGTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAGGTAGCAAATCCTGTATGTTAAGTATGTTATGGTGTCGTCCAGTTTCAAAAAAAAGTATGTTATGTTAAAGTAGGTATAGATCCCAAGTTCAAGTGATACTGCCACCCATTCATTTATATAATATTGCTCATCAACAAAATATTTTCACATGCTTCGTCCAAGACCTAAAATAAACAAAAATAATAATTAAAATGTCACTCTCTAAAACTGTCAACACTCCCTAAGGTGTTCCTTGATTATGTTACCTGTAACGCTACGTTTCTATGTCACATATTTATTGTGTGGTCATTTCAGGATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTGGTGAGTCAATACTGCTTATCCTGTTCATAATTTTTTTTTCAGTGCCAATCCTTCTCCAATTGCTGTTATTAATTTGAAACTTGCTGATTAAATACCACCACACACCCTTCCACTAATATAAAAAAGAACAGATGCAGAGACATTGTAGAGACCACGGTGTTAAATCTGAGAATTATATTTGTTCTATTGACGTTTCTGTCTGTCTTATTGACTGTTCCCAATTGATCTTTTCTGATAAAATGGCACACACGGTTATCTTCTTTTTTTTTGTGGAGTTATCATGAGAAATCATTAGAAATTACACCTGACTGGTCACCTATTGTAGGTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAG</genome_strand>
        <mrna_strand>AGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG......................................................................................................................................................................................................................................................................................................GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG.....................................................................................................................................................................................................................................................................................................................................GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717728" ref_strand="+" ref_description="SGN-E717728 [FC02CC08]">
      <seq>cccatggggatccgataatcaaaccctatatataaaggagtagatacgccgccccattcattcacatttatatattttatcaaccctaaatctttatttacaaattcctacactttcttcattcaatcggtgggcatctttatctgtgtgggtttcaagttgtagtttctcaagttgaagcttattttatgtccgaacaagccaccatctgtttgggatacgttggattgcttggaaaatattgtccaacgttaaaaaaaaagtgttctgatagggttgatgactgtatgcatcttgacttgtttcagcaaggacacttagagcttagtggttgcacccagatacaaccttttctcaacaaattttgggccaaaggatcatctggaaatccctaacaccttatttaggaattttcactgaatcaaaaatggctttgcaaaatattggagctggcaacagtgatgatgccttctacaggtataagatgccgaggatgattaccaagatagaggggcgtgggaatggcatcaagacaaacatcgtcaacatggttgacgttgcaaaagctctagcgcggccagcatcttacaccacaaaacattttgggtgcgagcttggagctcagtcgaagtttgatgaaaaaactgggacctcccttgtcaatggagctcatgatactgccaagcttgctggtcttcttgagattttcatcaagaaatatgttcagtgctatgggtgtggaaaccctgaaactgagatccttatcactaaaactcagatgatccaactgaagtgtgctgcatgtggttttatttctgatgtacacatgagagacaagctgacaacctttattcttaaaaacccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="113198" stop="115527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113490" g_stop="113618" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113619" i_stop="114489" i_length="871">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114490" g_stop="115227" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="867" r_length="738" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E717728" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113490" e_stop="113618"/>
          <exon e_start="114490" e_stop="115227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCAATTCCTTCAATCAAACCCTATATATAAAGGAGTAGATACGCCGCCCCATTCATTCACATTTATATATTTTATCAACCCTAAATCTTTATTTACAAATTCCTACACTTTCTTCATTCAATCGGTAAGATTTCTATTTACTGTTATTTGTTCTCTACTTTTGATCATTCCGAACTGTTTGATTCAATGCTGCTTTCCTGTTTGTAATTTTGATGATTTATCGATGTGTTTTGTACTTGTCTGGTTTTGGTATAATGGCAATGGCGGAGTTATTTGTATCGAATTTATATGTATAGCCATTGTCGATGGTTCTTTTCTGTTTCTCTCTCATTTATATGATTGAGCTAGTTATGAGTATCTAGCAATTGATAGGTATCTTAATTTTTGATGATTGGATGCTTAATTTATGAAATTTTAGATGGTCGGGGCTTGGAACCCTAATTTATGAAGCTATTGCAATTAGTAGGCTATACGTTTCGAAGAACTCTGATCAATTCTATATTAAAACTAGGCCATTAGTGAGCAACATATCTCTTGAGTTCAATTTTTTATTTACAATACTAATAGGTTTCTCTTGTAGCAAGTGTTACGGTAGTTTGCTATTCAGAGGCTTACACATGTGAGAGAGATCCGTCATTTGAGATTTATAGTTTTAGAACGAGTGGTACTGTAGTTTACAATTCAGAAGCTCAGACTCAGAATGAGTAAATTGGCCCAACTAATAAGAAGAGTACTTATAGAAATCTATTTATTAATATACATGATTTTTCTGGGAAATATCGTTTTTATTAAATTTAAAGCTACTTGCTTCAGCTATGCAACTGAAATAATCGGATTAAAAATCTTCTTTCTATCTATGGTGGAAGCTTATCTGCAACCTGTTATTATTTATCATTTTTGCTTTTATCTATTTCCTTTACCACTTACTCTACTCATTATTGAGAAGTTAACAGGAGCTTACTTTTTATCTTTTGATGTGGCTTTTCTTTCTGAAGGTGGGCATCTTTATCTGTGTGGGTTTCAAGTTGTAGTTTCTCAAGTTGAAGCTTATTTTATGTCCGAACAAGCCACCATCTGTTTGGGATACGTTGGATTGCTTGGAGAATATTGTCCAACGTTAAGAAGAAAGTGTTCTGATAGGGTTGATGACTGTATGCATCTTGACTTGTTTCAGCAAGGACACTTAGAGCTTAGTGGTTGCACCCAGATACAACCTTTTCTCAACAAATTTTGGGCCAAAGGATCATCTGGAAATCCCTAACACCTTATTTAGGAATTTTCACTGAATCAAAAATGGCTTTGCAGAATATTGGAGCTGGCAACAGTGATGATGCCTTCTACAGGTATAAGATGCCGAGGATGATTACCAAGATAGAGGGGCGTGGGAATGGCATCAAGACAAACATCGTCAACATGGTTGACGTTGCAAAAGCTCTAGCGCGGCCAGCATCTTACACCACAAAACATTTTGGGTGCGAGCTTGGAGCTCAGTCGAAGTTTGATGAAAAAACTGGGACCTCCCTTGTCAATGGAGCTCATGATACTGCCAAGCTTGCTGGTCTTCTTGAGATTTTCATCAAGAAATATGTTCAGTGCTATGGGTGTGGAAACCCTGAAACTGAGATCCTTATCACTAAAACTCAGATGATCCAACTGAAGTGTGCTGCATGTGGTTTTATTTCTGATGTAGACATGAGAGACAAGCTGACAACCTTTATTCTTAAAAACCCACC</genome_strand>
        <mrna_strand>CCCATGGGGATCCGATAATCAAACCCTATATATAAAGGAGTAGATACGCCGCCCCATTCATTCACATTTATATATTTTATCAACCCTAAATCTTTATTTACAAATTCCTACACTTTCTTCATTCAATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCATCTTTATCTGTGTGGGTTTCAAGTTGTAGTTTCTCAAGTTGAAGCTTATTTTATGTCCGAACAAGCCACCATCTGTTTGGGATACGTTGGATTGCTTGGAAAATATTGTCCAACGTTAAAAAAAAAGTGTTCTGATAGGGTTGATGACTGTATGCATCTTGACTTGTTTCAGCAAGGACACTTAGAGCTTAGTGGTTGCACCCAGATACAACCTTTTCTCAACAAATTTTGGGCCAAAGGATCATCTGGAAATCCCTAACACCTTATTTAGGAATTTTCACTGAATCAAAAATGGCTTTGCAAAATATTGGAGCTGGCAACAGTGATGATGCCTTCTACAGGTATAAGATGCCGAGGATGATTACCAAGATAGAGGGGCGTGGGAATGGCATCAAGACAAACATCGTCAACATGGTTGACGTTGCAAAAGCTCTAGCGCGGCCAGCATCTTACACCACAAAACATTTTGGGTGCGAGCTTGGAGCTCAGTCGAAGTTTGATGAAAAAACTGGGACCTCCCTTGTCAATGGAGCTCATGATACTGCCAAGCTTGCTGGTCTTCTTGAGATTTTCATCAAGAAATATGTTCAGTGCTATGGGTGTGGAAACCCTGAAACTGAGATCCTTATCACTAAAACTCAGATGATCCAACTGAAGTGTGCTGCATGTGGTTTTATTTCTGATGTACACATGAGAGACAAGCTGACAACCTTTATTCTTAAAAACCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311668" ref_strand="+" ref_description="SGN-E311668 [cLEZ-9-L11]">
      <seq>ttctctacttttgatcattccgaactgtttgattcaatgctgctttcctgtttgtaattttgatgatttatcgatgtgttttgtacttgtctggttttggtataatggcaatggcggagttatttgtatcgaatttatatgtatagccattgtcgatggttcttttctgtttctctctcatttatatgattgagctagttatgagtatctagcaattgataggtatcttaatttttgatgattggatgcttaatttatgaaattttagatggtcggggcttggaaccctaatttatgaagctattgcaattagtaggctatacgtttcgaagaactctgatcaattctatattaaaactaggccattagtgagcaacatatctcttgagttcaattttttatttacaatactaataggtttctcttgtagcaagtgttacggtagtttgctattcagaggcttacacatgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="113345" stop="114418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113645" g_stop="114118" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E311668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113645" e_stop="114118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTACTTTTGATCATTCCGAACTGTTTGATTCAATGCTGCTTTCCTGTTTGTAATTTTGATGATTTATCGATGTGTTTTGTACTTGTCTGGTTTTGGTATAATGGCAATGGCGGAGTTATTTGTATCGAATTTATATGTATAGCCATTGTCGATGGTTCTTTTCTGTTTCTCTCTCATTTATATGATTGAGCTAGTTATGAGTATCTAGCAATTGATAGGTATCTTAATTTTTGATGATTGGATGCTTAATTTATGAAATTTTAGATGGTCGGGGCTTGGAACCCTAATTTATGAAGCTATTGCAATTAGTAGGCTATACGTTTCGAAGAACTCTGATCAATTCTATATTAAAACTAGGCCATTAGTGAGCAACATATCTCTTGAGTTCAATTTTTTATTTACAATACTAATAGGTTTCTCTTGTAGCAAGTGTTACGGTAGTTTGCTATTCAGAGGCTTACACATGTGAG</genome_strand>
        <mrna_strand>TTCTCTACTTTTGATCATTCCGAACTGTTTGATTCAATGCTGCTTTCCTGTTTGTAATTTTGATGATTTATCGATGTGTTTTGTACTTGTCTGGTTTTGGTATAATGGCAATGGCGGAGTTATTTGTATCGAATTTATATGTATAGCCATTGTCGATGGTTCTTTTCTGTTTCTCTCTCATTTATATGATTGAGCTAGTTATGAGTATCTAGCAATTGATAGGTATCTTAATTTTTGATGATTGGATGCTTAATTTATGAAATTTTAGATGGTCGGGGCTTGGAACCCTAATTTATGAAGCTATTGCAATTAGTAGGCTATACGTTTCGAAGAACTCTGATCAATTCTATATTAAAACTAGGCCATTAGTGAGCAACATATCTCTTGAGTTCAATTTTTTATTTACAATACTAATAGGTTTCTCTTGTAGCAAGTGTTACGGTAGTTTGCTATTCAGAGGCTTACACATGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274462" ref_strand="+" ref_description="SGN-E274462 [cLEN-19-L11]">
      <seq>atgcatcttgacttgtttcagcaaggacacttagagcttagtggttgcacccagatacaaccttttctcaacaaattttgggccaaaggatcatctggaaatccctaacaccttatttaggaattttcactgaatcaaaaatggctttgcagaatattggagctggcaacagtgatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="114348" stop="115128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114648" g_stop="114828" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E274462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114648" e_stop="114828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATCTTGACTTGTTTCAGCAAGGACACTTAGAGCTTAGTGGTTGCACCCAGATACAACCTTTTCTCAACAAATTTTGGGCCAAAGGATCATCTGGAAATCCCTAACACCTTATTTAGGAATTTTCACTGAATCAAAAATGGCTTTGCAGAATATTGGAGCTGGCAACAGTGATGATGC</genome_strand>
        <mrna_strand>ATGCATCTTGACTTGTTTCAGCAAGGACACTTAGAGCTTAGTGGTTGCACCCAGATACAACCTTTTCTCAACAAATTTTGGGCCAAAGGATCATCTGGAAATCCCTAACACCTTATTTAGGAATTTTCACTGAATCAAAAATGGCTTTGCAGAATATTGGAGCTGGCAACAGTGATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317053" ref_strand="+" ref_description="SGN-E317053 [cTOA-27-E18]">
      <seq>ggaatggcatcaagacaaacatcgtcaacatggttgacgttgcaaaagctctagcgcggccagcatcttacaccacaaaacattttgggtgcgagcttggagctcagtcgaagtttgatgaaaaaactgggacttcccttgtcaatggagctcatgatactgccaagcttgctggtcttcttgagattttcatcaagaaatatgttcagtgctatgggtgtggaaaccctgaaactgagatcctcatcactaaaactcagatgatccaactgaagtgtgctgcatgtggttttatttctgatgtggacatgagagacaagctgacaacctttattcttaaaaacccacccgagtctaagaagggagccaaagacaagaaggcaatgagaagagctgaaaaggagcgtctaaaggaaggtgaagctgctgatgaagagctgaagaagcttaagaaagaaacgaagaaaaaggtttcttccaaggaagccactgcaaagcctaccttgaaaaagaaagccagtggctctgatgaggatcatgcatccccacccaaaaagcatgtgaatgtcaaggaagaggaggaagaagacgatgatgatgttcaatggcaaactgatacatcaatggaagctgcgcaacagcgcatacagnaaancagttgagtgctgtgacagctgaaatggttatgctgtccacaaatgagacagagaagaangctcaggcagctactactaaagcgcatcaaagtaccaaggtcgtttctgcaccatctgacaatgatcccaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="114579" stop="115966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114879" g_stop="115666" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E317053" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114879" e_stop="115666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGGCATCAAGACAAACATCGTCAACATGGTTGACGTTGCAAAAGCTCTAGCGCGGCCAGCATCTTACACCACAAAACATTTTGGGTGCGAGCTTGGAGCTCAGTCGAAGTTTGATGAAAAAACTGGGACCTCCCTTGTCAATGGAGCTCATGATACTGCCAAGCTTGCTGGTCTTCTTGAGATTTTCATCAAGAAATATGTTCAGTGCTATGGGTGTGGAAACCCTGAAACTGAGATCCTTATCACTAAAACTCAGATGATCCAACTGAAGTGTGCTGCATGTGGTTTTATTTCTGATGTAGACATGAGAGACAAGCTGACAACCTTTATTCTTAAAAACCCACCCGAGTCTAAGAAGGGAGCCAAAGACAAGAAGGCAATGAGAAGAGCTGAAAAGGAGCGTCTAAAGGAAGGTGAAGCTGCTGATGAAGAGCTGAAGAAGCTTAAGAAAGAAACAAAGAAAAAGGTTTCTTCCAAGGAAGCCACTGCAAAACCTACCTTGAAAAAGAAAGCTAGCGGCTCTGATGATGATCATGCATCCCCACCCAAAAGGCATGTGAATGTCAGGGAAGAGGAGGAAGAAGATGATGATGATGTTCAATGGCAAACTGATACATCAATGGAAGCTGCACAACAGCGCATACAGG-AA-CAGTTGAGTGCTGTGACTGCTGAAATGGTTATGCTCTCCACAAATGAGACAGAGAAGAAGCCCAAGGCAGCTACTACGCAAGCTCGCCAAAGTTCCAAGGTTGTTTCTGCACCCTCTGAGGATGATCCCAAAACT</genome_strand>
        <mrna_strand>GGAATGGCATCAAGACAAACATCGTCAACATGGTTGACGTTGCAAAAGCTCTAGCGCGGCCAGCATCTTACACCACAAAACATTTTGGGTGCGAGCTTGGAGCTCAGTCGAAGTTTGATGAAAAAACTGGGACTTCCCTTGTCAATGGAGCTCATGATACTGCCAAGCTTGCTGGTCTTCTTGAGATTTTCATCAAGAAATATGTTCAGTGCTATGGGTGTGGAAACCCTGAAACTGAGATCCTCATCACTAAAACTCAGATGATCCAACTGAAGTGTGCTGCATGTGGTTTTATTTCTGATGTGGACATGAGAGACAAGCTGACAACCTTTATTCTTAAAAACCCACCCGAGTCTAAGAAGGGAGCCAAAGACAAGAAGGCAATGAGAAGAGCTGAAAAGGAGCGTCTAAAGGAAGGTGAAGCTGCTGATGAAGAGCTGAAGAAGCTTAAGAAAGAAACGAAGAAAAAGGTTTCTTCCAAGGAAGCCACTGCAAAGCCTACCTTGAAAAAGAAAGCCAGTGGCTCTGATGAGGATCATGCATCCCCACCCAAAAAGCATGTGAATGTCAAGGAAGAGGAGGAAGAAGACGATGATGATGTTCAATGGCAAACTGATACATCAATGGAAGCTGCGCAACAGCGCATACAGNAAANCAGTTGAGTGCTGTGACAGCTGAAATGGTTATGCTGTCCACAAATGAGACAGAGAAGAANGCTCAGGCAGCTACTACTAAAGCGCATCAAAGTACCAAGGTCGTTTCTGCACCATCTGACAATGATCCCAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316008" ref_strand="+" ref_description="SGN-E316008 [cTOA-23-O15]">
      <seq>ttttatttctgatgtagacatgagagacaagctgacaacctttattcttagaaacccacccgagtctaagaagggagccaaagacaagaaggcaatgagaagagctgaaaaggagcgtctaaaggaaggtgaagctgctgatgaagagctgaagaagcttaagaaagaaacaaagaaaaaggtttcttccaaggaagccactgcaaaacctaccttgaaaaagaaagctagcggctctgatgatgatcatgcatccccacccaaaaggcatgtgaatgtcagggaagaggaggaagaagatgatgatgatgttcaatggcaaactgatacatcaatggaagctgcacaacagcgcatacaggaacagttgagtgctgtgactgctgaaatggttatgctctcctcgaatgagactgagaagaagcccaaggcagctactacgcaagctctgcaaagttccaaggttgtttctgcaccctctgaggatgatcccatgactgagaatggagagaacacatccgagactcttgttgacgatgtgaaaatacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="114868" stop="116020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115168" g_stop="115720" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E316008" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115168" e_stop="115720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTCTGATGTAGACATGAGAGACAAGCTGACAACCTTTATTCTTAAAAACCCACCCGAGTCTAAGAAGGGAGCCAAAGACAAGAAGGCAATGAGAAGAGCTGAAAAGGAGCGTCTAAAGGAAGGTGAAGCTGCTGATGAAGAGCTGAAGAAGCTTAAGAAAGAAACAAAGAAAAAGGTTTCTTCCAAGGAAGCCACTGCAAAACCTACCTTGAAAAAGAAAGCTAGCGGCTCTGATGATGATCATGCATCCCCACCCAAAAGGCATGTGAATGTCAGGGAAGAGGAGGAAGAAGATGATGATGATGTTCAATGGCAAACTGATACATCAATGGAAGCTGCACAACAGCGCATACAGGAACAGTTGAGTGCTGTGACTGCTGAAATGGTTATGCTCTCCACAAATGAGACAGAGAAGAAGCCCAAGGCAGCTACTACGCAAGCTCGCCAAAGTTCCAAGGTTGTTTCTGCACCCTCTGAGGATGATCCCAAAACTGAGAATGGAGAGAAAACATCCGAGACTCTTGTTGAGGATGTGAAAATACATCTG</genome_strand>
        <mrna_strand>TTTTATTTCTGATGTAGACATGAGAGACAAGCTGACAACCTTTATTCTTAGAAACCCACCCGAGTCTAAGAAGGGAGCCAAAGACAAGAAGGCAATGAGAAGAGCTGAAAAGGAGCGTCTAAAGGAAGGTGAAGCTGCTGATGAAGAGCTGAAGAAGCTTAAGAAAGAAACAAAGAAAAAGGTTTCTTCCAAGGAAGCCACTGCAAAACCTACCTTGAAAAAGAAAGCTAGCGGCTCTGATGATGATCATGCATCCCCACCCAAAAGGCATGTGAATGTCAGGGAAGAGGAGGAAGAAGATGATGATGATGTTCAATGGCAAACTGATACATCAATGGAAGCTGCACAACAGCGCATACAGGAACAGTTGAGTGCTGTGACTGCTGAAATGGTTATGCTCTCCTCGAATGAGACTGAGAAGAAGCCCAAGGCAGCTACTACGCAAGCTCTGCAAAGTTCCAAGGTTGTTTCTGCACCCTCTGAGGATGATCCCATGACTGAGAATGGAGAGAACACATCCGAGACTCTTGTTGACGATGTGAAAATACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326263" ref_strand="+" ref_description="SGN-E326263 [cTOC-14-E11]">
      <seq>cttctcttcaattccttcaaaccctatatattaaggaatctgtacgccgcctcatctattcacctttctatatatatattgtatgtattattaaccctaaaatcttcctctaccagttcctccaaattcttcaatcaatcggttgcgggcggggtttcaagttctagtttctcaagttgaaacttcttttatgtccgaacaagccaccctttatttgggatccgttggattgcttggagaatattgtccaacgtcgagaagaaagtgttctgatagggttgatgactgtatgcatcttgacttgtttcagcaaggacacttagagcttagtggttgcacccagatacaaccttctctcaacaaattttgggccaaaggatcatctggaaatccctaacaccttatttaggaattttcactgaatcagaaatggctttgcagaatattggagctggcaacagtgatgatgccttctacaggtataagatgccgaggatgattaccaagatagaggggcgtgggaatggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194N24-nPQ6a/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0194N24.1" temp_strand="+" temp_description="C02HBa0194N24.1  AC226512.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0194N24 sequenced_by:kribb upload_account_name:korea">
        <position start="118069" stop="119896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118369" g_stop="118509" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118510" i_stop="119353" i_length="844">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119354" g_stop="119742" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="530" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194N24.1" gen_strand="+" ref_id="SGN-E326263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118369" e_stop="118509"/>
          <exon e_start="119354" e_stop="119742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTCAATTCCTTCAAACCCTATATATTAAGGAATCTGTACGCCGCCTCATCTATTCACCTTTCTATATATATATTGTATGTATTATTAACCCTAAAATCTTCCTCTACCAGTTCCTCCAAATTCTTCAATCAATCGGTAAGATTTCTATTTACTTTTATTCGTTCTGTACTTTTGATCATTCTCAACTGTTTGATTCAATGTCGCTTTCGTGTTTTTAATTGATGATTTATCAATGTGGTTATACTTGTCTTGTTTTCTTCTCTCCGTGTATATCGATGGTTATCTTCTCTGTTTCTCTGATTTATATGAGCTGGTTATGAGTAATTGAGTATCGATAAATTGATCATATATTAATATTTGACGATTGATGCTTAATTTGTGAAGTTTTAGATGTTTCAATCCTTTACCCTAGTTTATTAAGCTTAGGTTGTATTAACTATGGCCTGGGCCATTAGTGAGTAGCATATCTCGAATGGTTTTTTTTTCTAGCAAGTGTTACTTCACATTGCAATTTCAACGTGATATATGAAAGGTTTGTCGTTTGAGTTGTATGATTTTATATATATCTTAAAGCGAGTGTTACTTTACTTTACGATTCAAAAACTTCATTGACGAAGTAATGTTATGCTTTACCGAGTAAATATGCCAAAGTAGTGAGAACAATACGTATAGCATTCTATTTATTCATATACATTGTTTTTCCAGGGAGGCATTTATTTTTCCTTAAATTTTCAGCTACTTGTTTCGGCTATACAACTGGAAGTTGAAACAATTAGGTCAAAGATCTCCTTTGTATCTAAGGTGGAAGCGAAATCTGCAACCTGATATTATTTATCAGTTTTCCCTTTGTCCTATTTTTACATTGCTTATATTTAGTAATAGGTTTAAAAAAAAAATTCATGTACAACTTACTCATTTTTTATTGAGAAGGTAACAGGAGCTTACTTTGTGTCTTTTGGTGTGCCTTTTTTTTCTGAAGGTTGCGGGCGGGGTTTCAAGTTCTAGTTTCTCAAGTTGAAACTTCTTTTATGTCCGAACAAGCCACCCTTTATTTGGGATCCGTTGGATTGCTTGGAGAATATTGTCCAACGTCGAGAAGAAAGTGTTCTGATAGGGTTGATGACTGTATGCATCTTGACTTGTTTCAGCAAGGACACTTAGAGCTTAGTGGTTGCACCCAGATACAACCTTCTCTCAACAAATTTTGGGCCAAAGGATCATCTGGAAATCCCTAACACCTTATTTAGGAATTTTCACTGAATCAGAAATGGCTTTGCAGAATATTGGAGCTGGCAACAGTGATGATGCCTTCTACAGGTATAAGATGCCGAGGATGATTACCAAGATAGAGGGGCGTGGGAATGGCAT</genome_strand>
        <mrna_strand>CTTCTCTTCAATTCCTTCAAACCCTATATATTAAGGAATCTGTACGCCGCCTCATCTATTCACCTTTCTATATATATATTGTATGTATTATTAACCCTAAAATCTTCCTCTACCAGTTCCTCCAAATTCTTCAATCAATCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGGGCGGGGTTTCAAGTTCTAGTTTCTCAAGTTGAAACTTCTTTTATGTCCGAACAAGCCACCCTTTATTTGGGATCCGTTGGATTGCTTGGAGAATATTGTCCAACGTCGAGAAGAAAGTGTTCTGATAGGGTTGATGACTGTATGCATCTTGACTTGTTTCAGCAAGGACACTTAGAGCTTAGTGGTTGCACCCAGATACAACCTTCTCTCAACAAATTTTGGGCCAAAGGATCATCTGGAAATCCCTAACACCTTATTTAGGAATTTTCACTGAATCAGAAATGGCTTTGCAGAATATTGGAGCTGGCAACAGTGATGATGCCTTCTACAGGTATAAGATGCCGAGGATGATTACCAAGATAGAGGGGCGTGGGAATGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>75</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="42223" PGL_stop="39610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42223" e_stop="41659"/>
            <exon e_start="40255" e_stop="39610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.892" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42223" e_stop="41659" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.892">
            <gDNA_intron_boundary i_start="41658" i_stop="40256" i_length="1403"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40255" e_stop="39610" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42223" stop="41659"/>
              <exon start="40255" stop="39976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42126" stop="41666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41690" stop="41659"/>
              <exon start="40255" stop="39610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41690" stop="41659"/>
              <exon start="40255" stop="39611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41689" stop="41659"/>
              <exon start="40255" stop="39706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40121" stop="39693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40116" stop="39693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39884" stop="39657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTTGGCGCAAGGCTTAATTGGCTTTTGCATTTCGGAGAGCCACCAAAGTGGTCTAAGGATGTGAAGTTTATCTTAGTTGATGTAGATAAGGAGGAGATTGAGCTTAGGAAACCATGTTTAGGGTTGGTTGGTGATGCTACTAAGGTTGTTGAGATGATACACAAGGAGATTAAGGATGACCCTTTTTGTTTAGGGAAGTCTCATCCTTGGGTTGAGGCATTATCAAAGAAGAGCAAGGAAAATGTTTTGAAAATGGAGGCACAACTGGCAAAGGACGTCGTGCCATTTAATTTTATGACACCAATGAGAATTATTAGAGATGCAATACTGCAATTGGGCAGTCCTGCTCCAATTGTTGTCTCCGAAGGAGCCAACACTATGGATGTGGGGCGATCAGTATTAGTTCAGACCGAGCCAAGGACCCGGTTGGATGCAGGGACGTGGGGGACAATGGGAGTTGGTCTGGGGTACTGCATTGCAGCTGCTGTTGCTTCACCTGAAAGGCTTGTAGTAGCTGTTGAAGGGGACTCTGGATTTGGCTTCAGTGCCATGGAAGTTGAG : ACCCTAGTTCGCTACCAGCTTCCAGTTGTGGTTATAGTCTTCAATAATGGCGGAGTTTATGGTGGTGACAGAAGGAACCCCGAAGAAATTACTGGACCTTATAAAGAAGATCCAGCACCCACATCTTTTGTTCCTGGTGCATCGTATCATCTTCTAATTGAAGCCTTTGGAGGAAAAGGATACCTTGTTGGAACACCTGATGAACTTAAATCTGCACTTACAGAATCTTTTTCTGCTAGGAAGCCTGCTGTTATTAATGTGACAATCGATCCTTATGCTGGTGCTGAAAGTGGGAGAATGCAGCACAAAAACTGAGGTTGCGGGTCTCTGATTATTTATGTATGGATATGCTTGCTGAAGTTCAGTTCTTGTCCACCATTCGTGCACAAAAGAAGATACAAGAAGAAAGATTGTTGTTGTGCCACGGTATTAATTTGTCATCGGTGGAGGAAAATAATAGCGAAGGGAATAGGTTAAGTGATTGTCTCTCCTTTGTATCGTCACAGATAGGGTATGGTGTTGAATTTACAGTTGATAGTGATGAATGAATTTTCGTATACATAGTAAATGAAAATAATGTATTTGCAACAAATACTTATCCTTGTGGTTTTCTTAGTTTCTCAAGTGTTCTATTGAGTTCCTTGTT</gDNA_template>
            <first_frame> D  S  W  R  K  A  *  L  A  F  A  F  R  R  A  T  K  V  V  *  G  C  E  V  Y  L  S  *  C  R  *  G  G  D  *  A  *  E  T  M  F  R  V  G  W  *  C  Y  *  G  C  *  D  D  T  Q  G  D  *  G  *  P  F  L  F  R  E  V  S  S  L  G  *  G  I  I  K  E  E  Q  G  K  C  F  E  N  G  G  T  T  G  K  G  R  R  A  I  *  F  Y  D  T  N  E  N  Y  *  R  C  N  T  A  I  G  Q  S  C  S  N  C  C  L  R  R  S  Q  H  Y  G  C  G  A  I  S  I  S  S  D  R  A  K  D  P  V  G  C  R  D  V  G  D  N  G  S  W  S  G  V  L  H  C  S  C  C  C  F  T  *  K  A  C  S  S  C  *  R  G  L  W  I  W  L  Q  C  H  G  S  *   : D  P  S  S  L  P  A  S  S  C  G  Y  S  L  Q  *  W  R  S  L  W  W  *  Q  K  E  P  R  R  N  Y  W  T  L  *  R  R  S  S  T  H  I  F  C  S  W  C  I  V  S  S  S  N  *  S  L  W  R  K  R  I  P  C  W  N  T  *  *  T  *  I  C  T  Y  R  I  F  F  C  *  E  A  C  C  Y  *  C  D  N  R  S  L  C  W  C  *  K  W  E  N  A  A  Q  K  L  R  L  R  V  S  D  Y  L  C  M  D  M  L  A  E  V  Q  F  L  S  T  I  R  A  Q  K  K  I  Q  E  E  R  L  L  L  C  H  G  I  N  L  S  S  V  E  E  N  N  S  E  G  N  R  L  S  D  C  L  S  F  V  S  S  Q  I  G  Y  G  V  E  F  T  V  D  S  D  E  *  I  F  V  Y  I  V  N  E  N  N  V  F  A  T  N  T  Y  P  C  G  F  L  S  F  S  S  V  L  L  S  S  L   </first_frame>
            <second_frame>  I  V  G  A  R  L  N  W  L  L  H  F  G  E  P  P  K  W  S  K  D  V  K  F  I  L  V  D  V  D  K  E  E  I  E  L  R  K  P  C  L  G  L  V  G  D  A  T  K  V  V  E  M  I  H  K  E  I  K  D  D  P  F  C  L  G  K  S  H  P  W  V  E  A  L  S  K  K  S  K  E  N  V  L  K  M  E  A  Q  L  A  K  D  V  V  P  F  N  F  M  T  P  M  R  I  I  R  D  A  I  L  Q  L  G  S  P  A  P  I  V  V  S  E  G  A  N  T  M  D  V  G  R  S  V  L  V  Q  T  E  P  R  T  R  L  D  A  G  T  W  G  T  M  G  V  G  L  G  Y  C  I  A  A  A  V  A  S  P  E  R  L  V  V  A  V  E  G  D  S  G  F  G  F  S  A  M  E  V  E  :  T  L  V  R  Y  Q  L  P  V  V  V  I  V  F  N  N  G  G  V  Y  G  G  D  R  R  N  P  E  E  I  T  G  P  Y  K  E  D  P  A  P  T  S  F  V  P  G  A  S  Y  H  L  L  I  E  A  F  G  G  K  G  Y  L  V  G  T  P  D  E  L  K  S  A  L  T  E  S  F  S  A  R  K  P  A  V  I  N  V  T  I  D  P  Y  A  G  A  E  S  G  R  M  Q  H  K  N  *  G  C  G  S  L  I  I  Y  V  W  I  C  L  L  K  F  S  S  C  P  P  F  V  H  K  R  R  Y  K  K  K  D  C  C  C  A  T  V  L  I  C  H  R  W  R  K  I  I  A  K  G  I  G  *  V  I  V  S  P  L  Y  R  H  R  *  G  M  V  L  N  L  Q  L  I  V  M  N  E  F  S  Y  T  *  *  M  K  I  M  Y  L  Q  Q  I  L  I  L  V  V  F  L  V  S  Q  V  F  Y  *  V  P  C  </second_frame>
            <third_frame>   *  L  A  Q  G  L  I  G  F  C  I  S  E  S  H  Q  S  G  L  R  M  *  S  L  S  *  L  M  *  I  R  R  R  L  S  L  G  N  H  V  *  G  W  L  V  M  L  L  R  L  L  R  *  Y  T  R  R  L  R  M  T  L  F  V  *  G  S  L  I  L  G  L  R  H  Y  Q  R  R  A  R  K  M  F  *  K  W  R  H  N  W  Q  R  T  S  C  H  L  I  L  *  H  Q  *  E  L  L  E  M  Q  Y  C  N  W  A  V  L  L  Q  L  L  S  P  K  E  P  T  L  W  M  W  G  D  Q  Y  *  F  R  P  S  Q  G  P  G  W  M  Q  G  R  G  G  Q  W  E  L  V  W  G  T  A  L  Q  L  L  L  L  H  L  K  G  L  *  *  L  L  K  G  T  L  D  L  A  S  V  P  W  K  L  R :   P  *  F  A  T  S  F  Q  L  W  L  *  S  S  I  M  A  E  F  M  V  V  T  E  G  T  P  K  K  L  L  D  L  I  K  K  I  Q  H  P  H  L  L  F  L  V  H  R  I  I  F  *  L  K  P  L  E  E  K  D  T  L  L  E  H  L  M  N  L  N  L  H  L  Q  N  L  F  L  L  G  S  L  L  L  L  M  *  Q  S  I  L  M  L  V  L  K  V  G  E  C  S  T  K  T  E  V  A  G  L  *  L  F  M  Y  G  Y  A  C  *  S  S  V  L  V  H  H  S  C  T  K  E  D  T  R  R  K  I  V  V  V  P  R  Y  *  F  V  I  G  G  G  K  *  *  R  R  E  *  V  K  *  L  S  L  L  C  I  V  T  D  R  V  W  C  *  I  Y  S  *  *  *  *  M  N  F  R  I  H  S  K  *  K  *  C  I  C  N  K  Y  L  S  L  W  F  S  *  F  L  K  C  S  I  E  F  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42222" stop="41659"/>
                    <exon start="40255" stop="39941"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVGARLNWLLHFGEPPKWSKDVKFILVDVDKEEIELRKPCLGLVGDATKVVEMIHKEIKDDPFCLGKSHPWVEALSKKSKENVLKMEAQLAKDVVPFNFMTPMRIIRDAILQLGSPAPIVVSEGANTMDVGRSVLVQTEPRTRLDAGTWGTMGVGLGYCIAAAVASPERLVVAVEGDSGFGFSAMEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEITGPYKEDPAPTSFVPGASYHLLIEAFGGKGYLVGTPDELKSALTESFSARKPAVINVTIDPYAGAESGRMQHKN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39968" stop="39708"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWENAAQKLRLRVSDYLCMDMLAEVQFLSTIRAQKKIQEERLLLCHGINLSSVEENNSEGNRLSDCLSFVSSQIGYGVEFTVDSDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="39889" PGL_stop="40120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39889" e_stop="40120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="39889" e_stop="40120" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39889" stop="40120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTGAACTTCAGCAAGCATATCCATACATAAATAATCAGAGACCCGCAACCTCAGTTTTTGTGCTGCATTCTCCCACTTTCAGCACCAGCATAAGGATCGATTGTCACATTAATAACAGCAGGCTTCCTAGCAGAAAAAGATTCTGTAAGTGCAGATTTAAGTTCATCAGGTGTTCCAACAAGGTATCCTTTTCCTCCAAAGGCTTCAATTAGAAGATGATACGATGCACC</gDNA_template>
            <first_frame> N  *  T  S  A  S  I  S  I  H  K  *  S  E  T  R  N  L  S  F  C  A  A  F  S  H  F  Q  H  Q  H  K  D  R  L  S  H  *  *  Q  Q  A  S  *  Q  K  K  I  L  *  V  Q  I  *  V  H  Q  V  F  Q  Q  G  I  L  F  L  Q  R  L  Q  L  E  D  D  T  M  H  </first_frame>
            <second_frame>  T  E  L  Q  Q  A  Y  P  Y  I  N  N  Q  R  P  A  T  S  V  F  V  L  H  S  P  T  F  S  T  S  I  R  I  D  C  H  I  N  N  S  R  L  P  S  R  K  R  F  C  K  C  R  F  K  F  I  R  C  S  N  K  V  S  F  S  S  K  G  F  N  *  K  M  I  R  C  T </second_frame>
            <third_frame>   L  N  F  S  K  H  I  H  T  *  I  I  R  D  P  Q  P  Q  F  L  C  C  I  L  P  L  S  A  P  A  *  G  S  I  V  T  L  I  T  A  G  F  L  A  E  K  D  S  V  S  A  D  L  S  S  S  G  V  P  T  R  Y  P  F  P  P  K  A  S  I  R  R  *  Y  D  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39890" stop="40102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TELQQAYPYINNQRPATSVFVLHSPTFSTSIRIDCHINNSRLPSRKRFCKCRFKFIRCSNKVSFSSKGFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="43123" PGL_stop="42325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43123" e_stop="42325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="43123" e_stop="42325" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43123" stop="42633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43123" stop="42645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43115" stop="42325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43103" stop="42596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43075" stop="42876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTGTAAAATCCATCACTGAAAAGAGTCCTCTGTTTCTAAAACTCACTTAAAATGTCTGATTCCAATCACCAAACCCTATCTACTGTCGACGGAAACACTTTCGTTGCCATGTGCCTTGCACGTGCCGGCGTCGACCGGATGTTCGGGGTTGTCGGGATACCCGTTACTTCCCTTGCGAACCGGTCGGTCGGACTCGGTATCCGGTTTATTGCTTTCCACAATGAACAATCTGCCGGTTACGCTGCTTCTGCTTATGGTTATCTTACCGGTCGACCCGGAATTCTTCTAACCGTCTCTGGTCCAGGTTGCGTTCATGGCCTCGCTGGGCTTTCCAATGCAACCGTTAATACCTGGCCCATGGTTTTGATTTCTGGGTCATCTGATCAGAAAGAGATGGGTCGCGGCGATTTTCAAGAATTAGATCAAATTGAGGCTGTGAAACCCTTCTCTAAGTACTCAGCTAAAGCAACTGATATAACGAAAATACCAAGCTGTGTTTTCAGTGTTTTGGATTGGGCAGTCTCTGGCAGGCCAGGTGGTTGTTATTTGGATCTTCCTACTGATGTGCTTCATCAGACAATTAGTGACACTGAAGCACAGAAATTGATCGATGATGCTGAGAGTTGCAGGAATAAAGAGCTCATTGCTAAACCCATTGTTCAACATTCAGAAATTGAAAAGGCGGCTGCTTTGTTGAGGAAAGCGGAGAGGCCTTTGATTGTGTTTGGAAAAGGGGCTGCATTTTCTAGAGCTGAAAATGCTTTGAAGAATTTAGTTGAGCGCACTGGAATACCC</gDNA_template>
            <first_frame> F  S  V  K  S  I  T  E  K  S  P  L  F  L  K  L  T  *  N  V  *  F  Q  S  P  N  P  I  Y  C  R  R  K  H  F  R  C  H  V  P  C  T  C  R  R  R  P  D  V  R  G  C  R  D  T  R  Y  F  P  C  E  P  V  G  R  T  R  Y  P  V  Y  C  F  P  Q  *  T  I  C  R  L  R  C  F  C  L  W  L  S  Y  R  S  T  R  N  S  S  N  R  L  W  S  R  L  R  S  W  P  R  W  A  F  Q  C  N  R  *  Y  L  A  H  G  F  D  F  W  V  I  *  S  E  R  D  G  S  R  R  F  S  R  I  R  S  N  *  G  C  E  T  L  L  *  V  L  S  *  S  N  *  Y  N  E  N  T  K  L  C  F  Q  C  F  G  L  G  S  L  W  Q  A  R  W  L  L  F  G  S  S  Y  *  C  A  S  S  D  N  *  *  H  *  S  T  E  I  D  R  *  C  *  E  L  Q  E  *  R  A  H  C  *  T  H  C  S  T  F  R  N  *  K  G  G  C  F  V  E  E  S  G  E  A  F  D  C  V  W  K  R  G  C  I  F  *  S  *  K  C  F  E  E  F  S  *  A  H  W  N  T  </first_frame>
            <second_frame>  S  L  *  N  P  S  L  K  R  V  L  C  F  *  N  S  L  K  M  S  D  S  N  H  Q  T  L  S  T  V  D  G  N  T  F  V  A  M  C  L  A  R  A  G  V  D  R  M  F  G  V  V  G  I  P  V  T  S  L  A  N  R  S  V  G  L  G  I  R  F  I  A  F  H  N  E  Q  S  A  G  Y  A  A  S  A  Y  G  Y  L  T  G  R  P  G  I  L  L  T  V  S  G  P  G  C  V  H  G  L  A  G  L  S  N  A  T  V  N  T  W  P  M  V  L  I  S  G  S  S  D  Q  K  E  M  G  R  G  D  F  Q  E  L  D  Q  I  E  A  V  K  P  F  S  K  Y  S  A  K  A  T  D  I  T  K  I  P  S  C  V  F  S  V  L  D  W  A  V  S  G  R  P  G  G  C  Y  L  D  L  P  T  D  V  L  H  Q  T  I  S  D  T  E  A  Q  K  L  I  D  D  A  E  S  C  R  N  K  E  L  I  A  K  P  I  V  Q  H  S  E  I  E  K  A  A  A  L  L  R  K  A  E  R  P  L  I  V  F  G  K  G  A  A  F  S  R  A  E  N  A  L  K  N  L  V  E  R  T  G  I  P </second_frame>
            <third_frame>   L  C  K  I  H  H  *  K  E  S  S  V  S  K  T  H  L  K  C  L  I  P  I  T  K  P  Y  L  L  S  T  E  T  L  S  L  P  C  A  L  H  V  P  A  S  T  G  C  S  G  L  S  G  Y  P  L  L  P  L  R  T  G  R  S  D  S  V  S  G  L  L  L  S  T  M  N  N  L  P  V  T  L  L  L  L  M  V  I  L  P  V  D  P  E  F  F  *  P  S  L  V  Q  V  A  F  M  A  S  L  G  F  P  M  Q  P  L  I  P  G  P  W  F  *  F  L  G  H  L  I  R  K  R  W  V  A  A  I  F  K  N  *  I  K  L  R  L  *  N  P  S  L  S  T  Q  L  K  Q  L  I  *  R  K  Y  Q  A  V  F  S  V  F  W  I  G  Q  S  L  A  G  Q  V  V  V  I  W  I  F  L  L  M  C  F  I  R  Q  L  V  T  L  K  H  R  N  *  S  M  M  L  R  V  A  G  I  K  S  S  L  L  N  P  L  F  N  I  Q  K  L  K  R  R  L  L  C  *  G  K  R  R  G  L  *  L  C  L  E  K  G  L  H  F  L  E  L  K  M  L  *  R  I  *  L  S  A  L  E  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43080" stop="42325"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLKMSDSNHQTLSTVDGNTFVAMCLARAGVDRMFGVVGIPVTSLANRSVGLGIRFIAFHNEQSAGYAASAYGYLTGRPGILLTVSGPGCVHGLAGLSNATVNTWPMVLISGSSDQKEMGRGDFQELDQIEAVKPFSKYSAKATDITKIPSCVFSVLDWAVSGRPGGCYLDLPTDVLHQTISDTEAQKLIDDAESCRNKELIAKPIVQHSEIEKAAALLRKAERPLIVFGKGAAFSRAENALKNLVERTGIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="47023" PGL_stop="44552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47023" e_stop="46765"/>
            <exon e_start="45024" e_stop="44909"/>
            <exon e_start="44815" e_stop="44552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47023" e_stop="46765" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.936">
            <gDNA_intron_boundary i_start="46764" i_stop="45025" i_length="1740"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45024" e_stop="44909" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44908" i_stop="44816" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="44815" e_stop="44552" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47023" stop="46765"/>
              <exon start="45024" stop="44909"/>
              <exon start="44815" stop="44552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTTCTAACCATAACCAGTTGCCTTTTCTGCTTGAAAATTATTGGCTATGGCGGTGAGAACAAGTCTGTCTCTGCGACGGAGATTTTAGATTCCAAACTTTTCTTGTGCTGGTTCAAACGCCGACCAGAGTTACAGCTTTGATACAATATGAGTGCGGTGAACATTACAAATGTCGCCGTATTAGACAATCCGGCGTCGTTCTTGTCCCCGTTCCAGTTTGAAATATCCTACGAGTGTGTCACTCCTCTCCAAGATG : ATTTGGAATGGAAGCTCATTTATGTGGGATCTGCCGAGGATGAGACATATGACCAAGTTTTAGAAAGCGTTCTTGTTGGCCCTGTAAATGTAGGAAATTACCGCTTTGTCTTGCAG : GCGGACCCTCCAGATCCTTTGAAAATTCGTGAAGAAGACATAATTGGTGTTACTGTCCTCTTGTTAACCTGCTCATATTTGGGACAGGAATTTGTACGAGTTGGGTACTATGTGAACAATGATTATGATGATGAGCAGTTGAGAGAAGAGCCTCCACAGAAAGTCCTAATTGATAGGGTTCAAAGAAATATATTAACGGACAAACCTAGAGTAACGAAGTTCCCTATTAACTTCCGCCCTGAAAATAGCGAAAGAGAGGAGCAA</gDNA_template>
            <first_frame> V  V  L  T  I  T  S  C  L  F  C  L  K  I  I  G  Y  G  G  E  N  K  S  V  S  A  T  E  I  L  D  S  K  L  F  L  C  W  F  K  R  R  P  E  L  Q  L  *  Y  N  M  S  A  V  N  I  T  N  V  A  V  L  D  N  P  A  S  F  L  S  P  F  Q  F  E  I  S  Y  E  C  V  T  P  L  Q  D   : D  L  E  W  K  L  I  Y  V  G  S  A  E  D  E  T  Y  D  Q  V  L  E  S  V  L  V  G  P  V  N  V  G  N  Y  R  F  V  L  Q  :  A  D  P  P  D  P  L  K  I  R  E  E  D  I  I  G  V  T  V  L  L  L  T  C  S  Y  L  G  Q  E  F  V  R  V  G  Y  Y  V  N  N  D  Y  D  D  E  Q  L  R  E  E  P  P  Q  K  V  L  I  D  R  V  Q  R  N  I  L  T  D  K  P  R  V  T  K  F  P  I  N  F  R  P  E  N  S  E  R  E  E  Q </first_frame>
            <second_frame>  L  F  *  P  *  P  V  A  F  S  A  *  K  L  L  A  M  A  V  R  T  S  L  S  L  R  R  R  F  *  I  P  N  F  S  C  A  G  S  N  A  D  Q  S  Y  S  F  D  T  I  *  V  R  *  T  L  Q  M  S  P  Y  *  T  I  R  R  R  S  C  P  R  S  S  L  K  Y  P  T  S  V  S  L  L  S  K  M  :  I  W  N  G  S  S  F  M  W  D  L  P  R  M  R  H  M  T  K  F  *  K  A  F  L  L  A  L  *  M  *  E  I  T  A  L  S  C  R :   R  T  L  Q  I  L  *  K  F  V  K  K  T  *  L  V  L  L  S  S  C  *  P  A  H  I  W  D  R  N  L  Y  E  L  G  T  M  *  T  M  I  M  M  M  S  S  *  E  K  S  L  H  R  K  S  *  L  I  G  F  K  E  I  Y  *  R  T  N  L  E  *  R  S  S  L  L  T  S  A  L  K  I  A  K  E  R  S   </second_frame>
            <third_frame>   C  S  N  H  N  Q  L  P  F  L  L  E  N  Y  W  L  W  R  *  E  Q  V  C  L  C  D  G  D  F  R  F  Q  T  F  L  V  L  V  Q  T  P  T  R  V  T  A  L  I  Q  Y  E  C  G  E  H  Y  K  C  R  R  I  R  Q  S  G  V  V  L  V  P  V  P  V  *  N  I  L  R  V  C  H  S  S  P  R  * :   F  G  M  E  A  H  L  C  G  I  C  R  G  *  D  I  *  P  S  F  R  K  R  S  C  W  P  C  K  C  R  K  L  P  L  C  L  A   : G  G  P  S  R  S  F  E  N  S  *  R  R  H  N  W  C  Y  C  P  L  V  N  L  L  I  F  G  T  G  I  C  T  S  W  V  L  C  E  Q  *  L  *  *  *  A  V  E  R  R  A  S  T  E  S  P  N  *  *  G  S  K  K  Y  I  N  G  Q  T  *  S  N  E  V  P  Y  *  L  P  P  *  K  *  R  K  R  G  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46879" stop="46765"/>
                    <exon start="45024" stop="44909"/>
                    <exon start="44815" stop="44552"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNMSAVNITNVAVLDNPASFLSPFQFEISYECVTPLQDDLEWKLIYVGSAEDETYDQVLESVLVGPVNVGNYRFVLQADPPDPLKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYDDEQLREEPPQKVLIDRVQRNILTDKPRVTKFPINFRPENSEREEQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="64612" PGL_stop="53526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64612" e_stop="64567"/>
            <exon e_start="64423" e_stop="64306"/>
            <exon e_start="63532" e_stop="63451"/>
            <exon e_start="61933" e_stop="61831"/>
            <exon e_start="61703" e_stop="61607"/>
            <exon e_start="60430" e_stop="60328"/>
            <exon e_start="59356" e_stop="59237"/>
            <exon e_start="58862" e_stop="58825"/>
            <exon e_start="57703" e_stop="57589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.980" e_score="0.957"/>
          <exon-intron don_prob="0.976" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.953" e_score="0.981"/>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.805" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="64612" e_stop="64567" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.980">
            <gDNA_intron_boundary i_start="64566" i_stop="64424" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64423" e_stop="64306" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.979">
            <gDNA_intron_boundary i_start="64305" i_stop="63533" i_length="773"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63532" e_stop="63451" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.883" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63450" i_stop="61934" i_length="1517"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="61933" e_stop="61831" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.834" acc_prob="0.953">
            <gDNA_intron_boundary i_start="61830" i_stop="61704" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61703" e_stop="61607" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="61606" i_stop="60431" i_length="1176"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60430" e_stop="60328" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.776" acc_prob="0.963">
            <gDNA_intron_boundary i_start="60327" i_stop="59357" i_length="971"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59356" e_stop="59237" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.924" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59236" i_stop="58863" i_length="374"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="58862" e_stop="58825" e_length="38"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.805">
            <gDNA_intron_boundary i_start="58824" i_stop="57704" i_length="1121"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="57703" e_stop="57589" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64612" stop="64567"/>
              <exon start="64423" stop="64306"/>
              <exon start="63532" stop="63451"/>
              <exon start="61933" stop="61831"/>
              <exon start="61703" stop="61607"/>
              <exon start="60430" stop="60328"/>
              <exon start="59356" stop="59237"/>
              <exon start="58862" stop="58825"/>
              <exon start="57703" stop="57589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATGTATCACTTCCCCATGAGGAATACTCTCCCGTGGAACATG : CTTGCTGGAGTAAGGGGCAGGCTACTCCATACATACATCTTGCACGAACTTTTGAATTGGTAAAGGAAGAAAAAGGGAAGATAAAAGCAACGTCAATGTTGTGCAATATGTTTCGGAG : CTTGCTAGCTTTGTCTCCGGAGGATGTGCTTCCTGCTGTGTACTTGTGCACAAACAAGATAGCCCCTGACCATGAAAATATG : GAATTGAACATTGGGGGTAGTACTGTTGTAGCAGCACTAGAGGAGGCATGCGGGACAAAGAAATCAAAAGTACGAGAACTATACAACAGCCTCGGTGATCTTG : GTGATGTTGCTCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAGGATAAG : CTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGTCAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTG : GTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAG : CAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTG : GATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAAGTAACCGCTAACAAGACCTGTTATTTGCTCTTATGTTCTTGATTTTTTT</gDNA_template>
            <first_frame> N  Y  V  S  L  P  H  E  E  Y  S  P  V  E  H   : A  C  W  S  K  G  Q  A  T  P  Y  I  H  L  A  R  T  F  E  L  V  K  E  E  K  G  K  I  K  A  T  S  M  L  C  N  M  F  R  S :   L  L  A  L  S  P  E  D  V  L  P  A  V  Y  L  C  T  N  K  I  A  P  D  H  E  N  M  :  E  L  N  I  G  G  S  T  V  V  A  A  L  E  E  A  C  G  T  K  K  S  K  V  R  E  L  Y  N  S  L  G  D  L   : G  D  V  A  Q  L  C  R  Q  T  Q  S  L  L  A  P  P  V  A  L  T  I  R  G  V  Y  S  A  L  R  R  I  S :   L  Q  A  G  S  G  S  A  I  R  K  K  S  L  I  V  N  L  M  C  S  C  R  E  K  E  M  K  F  L  V  R  T  L  :  V  R  N  L  R  I  G  A  M  M  R  T  V  L  P  A  L  A  Q  A  V  V  F  N  S  T  P  Y  E  G  L  V  E  N  L  K  D  C  L  Q  :  Q  K  *  *  K  H  I  T  S  F  P  A  W :   I  T  N  G  V  P  Q  V  M  K  L  F  Q  N  K  A  F  T  C  E  Y  K  *  P  L  T  R  P  V  I  C  S  Y  V  L  D  F  F </first_frame>
            <second_frame>  I  M  Y  H  F  P  M  R  N  T  L  P  W  N  M  :  L  A  G  V  R  G  R  L  L  H  T  Y  I  L  H  E  L  L  N  W  *  R  K  K  K  G  R  *  K  Q  R  Q  C  C  A  I  C  F  G   : A  C  *  L  C  L  R  R  M  C  F  L  L  C  T  C  A  Q  T  R  *  P  L  T  M  K  I  W :   N  *  T  L  G  V  V  L  L  *  Q  H  *  R  R  H  A  G  Q  R  N  Q  K  Y  E  N  Y  T  T  A  S  V  I  L  :  V  M  L  L  N  F  A  D  K  H  N  H  Y  L  L  L  Q  W  H  L  Q  L  G  V  Y  T  L  L  L  E  G  *   : A  C  K  Q  V  V  G  A  P  S  E  R  K  A  *  L  S  I  S  C  V  H  V  E  R  R  R  *  S  F  L  *  E  R  W :   F  G  I  C  A  L  E  P  *  *  E  L  F  F  L  H  *  L  K  Q  L  C  S  I  L  L  L  M  R  D  W  S  K  T  *  K  I  V  C  S :   R  S  S  R  S  I  *  H  P  S  Q  L   : G  L  L  M  G  S  L  K  *  *  S  S  F  R  T  K  P  L  H  V  N  T  S  N  R  *  Q  D  L  L  F  A  L  M  F  L  I  F   </second_frame>
            <third_frame>   L  C  I  T  S  P  *  G  I  L  S  R  G  T  C :   L  L  E  *  G  A  G  Y  S  I  H  T  S  C  T  N  F  *  I  G  K  G  R  K  R  E  D  K  S  N  V  N  V  V  Q  Y  V  S  E  :  L  A  S  F  V  S  G  G  C  A  S  C  C  V  L  V  H  K  Q  D  S  P  *  P  *  K  Y   : G  I  E  H  W  G  *  Y  C  C  S  S  T  R  G  G  M  R  D  K  E  I  K  S  T  R  T  I  Q  Q  P  R  *  S  W :   *  C  C  S  T  L  P  T  N  T  I  I  T  C  S  S  S  G  T  Y  N  *  G  C  I  L  C  S  *  K  D  K  :  L  A  S  R  *  W  E  R  H  P  K  E  K  P  D  C  Q  S  H  V  F  M  *  R  E  G  D  E  V  S  C  E  N  V   : G  S  E  F  A  H  W  S  H  D  E  N  C  S  S  C  I  S  S  S  S  C  V  Q  F  Y  S  L  *  G  T  G  R  K  P  E  R  L  S  A   : A  E  V  V  E  A  Y  N  I  L  P  S  L  :  D  Y  *  W  G  P  S  S  D  E  A  L  S  E  Q  S  L  Y  M  *  I  Q  V  T  A  N  K  T  C  Y  L  L  L  C  S  *  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64612" stop="64567"/>
                    <exon start="64423" stop="64306"/>
                    <exon start="63532" stop="63451"/>
                    <exon start="61933" stop="61831"/>
                    <exon start="61703" stop="61607"/>
                    <exon start="60430" stop="60328"/>
                    <exon start="59356" stop="59237"/>
                    <exon start="58862" stop="58854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYVSLPHEEYSPVEHACWSKGQATPYIHLARTFELVKEEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAPDHENMELNIGGSTVVAALEEACGTKKSKVRELYNSLGDLGDVAQLCRQTQSLLAPPVALTIRGVYSALRRISLQAGSGSAIRKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTVLPALAQAVVFNSTPYEGLVENLKDCLQQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59294" e_stop="59237"/>
            <exon e_start="58872" e_stop="58825"/>
            <exon e_start="57893" e_stop="57796"/>
            <exon e_start="57703" e_stop="57638"/>
            <exon e_start="56146" e_stop="55987"/>
            <exon e_start="53633" e_stop="53526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.734" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.996" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59294" e_stop="59237" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.734">
            <gDNA_intron_boundary i_start="59236" i_stop="58873" i_length="364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58872" e_stop="58825" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="58824" i_stop="57894" i_length="931"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57893" e_stop="57796" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.867" acc_prob="0.805">
            <gDNA_intron_boundary i_start="57795" i_stop="57704" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57703" e_stop="57638" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57637" i_stop="56147" i_length="1491"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="56146" e_stop="55987" e_length="160"/>
          </exon>
          <intron i_serial="5" don_prob="0.741" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55986" i_stop="53634" i_length="2353"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53633" e_stop="53526" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59294" stop="59237"/>
              <exon start="58872" stop="58825"/>
              <exon start="57893" stop="57796"/>
              <exon start="57703" stop="57638"/>
              <exon start="56146" stop="55987"/>
              <exon start="53633" stop="53526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAG : CGACTTTCAGCAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTG : GATGTACTTGTTCCTTCCTTGATGGAGAAGGGGATTGAGTTTTCCTCAAATACATTGTCAATGGCTCCAGGCATACCCATCAAACCAATGCTTGCAAA : GATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAA : ATATGATGGTCAGCGAGCTCAGATTCATAAACTGTCTGATGGTTCAGTCCGTGTATTTTCAAGGAATGGGGATGAGACAACATCTAGATTTCCGGATTTGGTAAATATTATTACAGAATCATGTGATTCCAGAGGAGCAACATTTATCTTGGATGCAGAG : GTTGTTGCAATTGATAGGCAAAATGGTCCAAAGCTCATGTCGTTCCAAGAACTATCTTCACGTGAGAGGGGGTCCAAAGATTCCATCATTGCGTTAGATAAAATTAAG</gDNA_template>
            <first_frame> C  V  Q  F  Y  S  L  *  G  T  G  R  K  P  E  R  L  S  A   : A  T  F  S  R  S  S  R  S  I  *  H  P  S  Q  L   : G  C  T  C  S  F  L  D  G  E  G  D  *  V  F  L  K  Y  I  V  N  G  S  R  H  T  H  Q  T  N  A  C  K  :  D  Y  *  W  G  P  S  S  D  E  A  L  S  E  Q  S  L  Y  M  *  I  Q  :  I  *  W  S  A  S  S  D  S  *  T  V  *  W  F  S  P  C  I  F  K  E  W  G  *  D  N  I  *  I  S  G  F  G  K  Y  Y  Y  R  I  M  *  F  Q  R  S  N  I  Y  L  G  C  R   : G  C  C  N  *  *  A  K  W  S  K  A  H  V  V  P  R  T  I  F  T  *  E  G  V  Q  R  F  H  H  C  V  R  *  N  *  </first_frame>
            <second_frame>  V  F  N  S  T  P  Y  E  G  L  V  E  N  L  K  D  C  L  Q  :  R  L  S  A  E  V  V  E  A  Y  N  I  L  P  S  L  :  D  V  L  V  P  S  L  M  E  K  G  I  E  F  S  S  N  T  L  S  M  A  P  G  I  P  I  K  P  M  L  A  K :   I  T  N  G  V  P  Q  V  M  K  L  F  Q  N  K  A  F  T  C  E  Y  K :   Y  D  G  Q  R  A  Q  I  H  K  L  S  D  G  S  V  R  V  F  S  R  N  G  D  E  T  T  S  R  F  P  D  L  V  N  I  I  T  E  S  C  D  S  R  G  A  T  F  I  L  D  A  E  :  V  V  A  I  D  R  Q  N  G  P  K  L  M  S  F  Q  E  L  S  S  R  E  R  G  S  K  D  S  I  I  A  L  D  K  I  K </second_frame>
            <third_frame>   C  S  I  L  L  L  M  R  D  W  S  K  T  *  K  I  V  C  S :   D  F  Q  Q  K  *  *  K  H  I  T  S  F  P  A  W :   M  Y  L  F  L  P  *  W  R  R  G  L  S  F  P  Q  I  H  C  Q  W  L  Q  A  Y  P  S  N  Q  C  L  Q   : R  L  L  M  G  S  L  K  *  *  S  S  F  R  T  K  P  L  H  V  N  T   : N  M  M  V  S  E  L  R  F  I  N  C  L  M  V  Q  S  V  Y  F  Q  G  M  G  M  R  Q  H  L  D  F  R  I  W  *  I  L  L  Q  N  H  V  I  P  E  E  Q  H  L  S  W  M  Q  R :   L  L  Q  L  I  G  K  M  V  Q  S  S  C  R  S  K  N  Y  L  H  V  R  G  G  P  K  I  P  S  L  R  *  I  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59293" stop="59237"/>
                    <exon start="58872" stop="58825"/>
                    <exon start="57893" stop="57796"/>
                    <exon start="57703" stop="57638"/>
                    <exon start="56146" stop="55987"/>
                    <exon start="53633" stop="53526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFNSTPYEGLVENLKDCLQRLSAEVVEAYNILPSLDVLVPSLMEKGIEFSSNTLSMAPGIPIKPMLAKITNGVPQVMKLFQNKAFTCEYKYDGQRAQIHKLSDGSVRVFSRNGDETTSRFPDLVNIITESCDSRGATFILDAEVVAIDRQNGPKLMSFQELSSRERGSKDSIIALDKIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="61693" e_stop="61607"/>
            <exon e_start="60430" e_stop="60328"/>
            <exon e_start="59356" e_stop="59237"/>
            <exon e_start="58862" e_stop="58825"/>
            <exon e_start="57703" e_stop="57638"/>
            <exon e_start="56146" e_stop="56129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.963" e_score="0.990"/>
          <exon-intron don_prob="0.924" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61693" e_stop="61607" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="61606" i_stop="60431" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="60430" e_stop="60328" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.776" acc_prob="0.963">
            <gDNA_intron_boundary i_start="60327" i_stop="59357" i_length="971"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59356" e_stop="59237" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59236" i_stop="58863" i_length="374"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58862" e_stop="58825" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.805">
            <gDNA_intron_boundary i_start="58824" i_stop="57704" i_length="1121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57703" e_stop="57638" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57637" i_stop="56147" i_length="1491"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56146" e_stop="56129" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61693" stop="61607"/>
              <exon start="60430" stop="60328"/>
              <exon start="59356" stop="59237"/>
              <exon start="58862" stop="58825"/>
              <exon start="57703" stop="57638"/>
              <exon start="56146" stop="56129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAGGATAAG : CTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGTCAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTG : GTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAG : CAGAAGTAGTAGAAGCATATAACATCCTTCCCAGCTTG : GATTACTAATGGGGTCCCTCAAGTGATGAAGCTCTTTCAGAACAAAGCCTTTACATGTGAATACAA : ATATGATGGTCAGCGAGC</gDNA_template>
            <first_frame> S  T  L  P  T  N  T  I  I  T  C  S  S  S  G  T  Y  N  *  G  C  I  L  C  S  *  K  D  K  :  L  A  S  R  *  W  E  R  H  P  K  E  K  P  D  C  Q  S  H  V  F  M  *  R  E  G  D  E  V  S  C  E  N  V   : G  S  E  F  A  H  W  S  H  D  E  N  C  S  S  C  I  S  S  S  S  C  V  Q  F  Y  S  L  *  G  T  G  R  K  P  E  R  L  S  A   : A  E  V  V  E  A  Y  N  I  L  P  S  L  :  D  Y  *  W  G  P  S  S  D  E  A  L  S  E  Q  S  L  Y  M  *  I  Q  :  I  *  W  S  A  S </first_frame>
            <second_frame>  Q  L  C  R  Q  T  Q  S  L  L  A  P  P  V  A  L  T  I  R  G  V  Y  S  A  L  R  R  I  S :   L  Q  A  G  S  G  S  A  I  R  K  K  S  L  I  V  N  L  M  C  S  C  R  E  K  E  M  K  F  L  V  R  T  L  :  V  R  N  L  R  I  G  A  M  M  R  T  V  L  P  A  L  A  Q  A  V  V  F  N  S  T  P  Y  E  G  L  V  E  N  L  K  D  C  L  Q  :  Q  K  *  *  K  H  I  T  S  F  P  A  W :   I  T  N  G  V  P  Q  V  M  K  L  F  Q  N  K  A  F  T  C  E  Y  K :   Y  D  G  Q  R   </second_frame>
            <third_frame>   N  F  A  D  K  H  N  H  Y  L  L  L  Q  W  H  L  Q  L  G  V  Y  T  L  L  L  E  G  *   : A  C  K  Q  V  V  G  A  P  S  E  R  K  A  *  L  S  I  S  C  V  H  V  E  R  R  R  *  S  F  L  *  E  R  W :   F  G  I  C  A  L  E  P  *  *  E  L  F  F  L  H  *  L  K  Q  L  C  S  I  L  L  L  M  R  D  W  S  K  T  *  K  I  V  C  S :   R  S  S  R  S  I  *  H  P  S  Q  L   : G  L  L  M  G  S  L  K  *  *  S  S  F  R  T  K  P  L  H  V  N  T   : N  M  M  V  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61692" stop="61607"/>
                    <exon start="60430" stop="60328"/>
                    <exon start="59356" stop="59237"/>
                    <exon start="58862" stop="58854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLCRQTQSLLAPPVALTIRGVYSALRRISLQAGSGSAIRKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTVLPALAQAVVFNSTPYEGLVENLKDCLQQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="61875" e_stop="61831"/>
            <exon e_start="61703" e_stop="61607"/>
            <exon e_start="60430" e_stop="60328"/>
            <exon e_start="59356" e_stop="59218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.834" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="0.990"/>
          <exon-intron don_prob="0.776" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61875" e_stop="61831" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.834" acc_prob="0.953">
            <gDNA_intron_boundary i_start="61830" i_stop="61704" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="61703" e_stop="61607" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="61606" i_stop="60431" i_length="1176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60430" e_stop="60328" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.776" acc_prob="0.963">
            <gDNA_intron_boundary i_start="60327" i_stop="59357" i_length="971"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59356" e_stop="59218" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61875" stop="61831"/>
              <exon start="61703" stop="61607"/>
              <exon start="60430" stop="60328"/>
              <exon start="59356" stop="59218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATCAAAAGTACGAGAACTATACAACAGCCTCGGTGATCTTG : GTGATGTTGCTCAACTTTGCCGACAAACACAATCATTACTTGCTCCTCCAGTGGCACTTACAATTAGGGGTGTATACTCTGCTCTTAGAAGGATAAG : CTTGCAAGCAGGTAGTGGGAGCGCCATCCGAAAGAAAAGCCTGATTGTCAATCTCATGTGTTCATGTAGAGAGAAGGAGATGAAGTTTCTTGTGAGAACGTTG : GTTCGGAATTTGCGCATTGGAGCCATGATGAGAACTGTTCTTCCTGCATTAGCTCAAGCAGTTGTGTTCAATTCTACTCCTTATGAGGGACTGGTCGAAAACCTGAAAGATTGTCTGCAGGTTTATATTCTATTCATCT</gDNA_template>
            <first_frame> R  N  Q  K  Y  E  N  Y  T  T  A  S  V  I  L  :  V  M  L  L  N  F  A  D  K  H  N  H  Y  L  L  L  Q  W  H  L  Q  L  G  V  Y  T  L  L  L  E  G  *   : A  C  K  Q  V  V  G  A  P  S  E  R  K  A  *  L  S  I  S  C  V  H  V  E  R  R  R  *  S  F  L  *  E  R  W :   F  G  I  C  A  L  E  P  *  *  E  L  F  F  L  H  *  L  K  Q  L  C  S  I  L  L  L  M  R  D  W  S  K  T  *  K  I  V  C  R  F  I  F  Y  S  S </first_frame>
            <second_frame>  E  I  K  S  T  R  T  I  Q  Q  P  R  *  S  W :   *  C  C  S  T  L  P  T  N  T  I  I  T  C  S  S  S  G  T  Y  N  *  G  C  I  L  C  S  *  K  D  K  :  L  A  S  R  *  W  E  R  H  P  K  E  K  P  D  C  Q  S  H  V  F  M  *  R  E  G  D  E  V  S  C  E  N  V   : G  S  E  F  A  H  W  S  H  D  E  N  C  S  S  C  I  S  S  S  S  C  V  Q  F  Y  S  L  *  G  T  G  R  K  P  E  R  L  S  A  G  L  Y  S  I  H   </second_frame>
            <third_frame>   K  S  K  V  R  E  L  Y  N  S  L  G  D  L   : G  D  V  A  Q  L  C  R  Q  T  Q  S  L  L  A  P  P  V  A  L  T  I  R  G  V  Y  S  A  L  R  R  I  S :   L  Q  A  G  S  G  S  A  I  R  K  K  S  L  I  V  N  L  M  C  S  C  R  E  K  E  M  K  F  L  V  R  T  L  :  V  R  N  L  R  I  G  A  M  M  R  T  V  L  P  A  L  A  Q  A  V  V  F  N  S  T  P  Y  E  G  L  V  E  N  L  K  D  C  L  Q  V  Y  I  L  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61873" stop="61831"/>
                    <exon start="61703" stop="61607"/>
                    <exon start="60430" stop="60328"/>
                    <exon start="59356" stop="59219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKVRELYNSLGDLGDVAQLCRQTQSLLAPPVALTIRGVYSALRRISLQAGSGSAIRKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTVLPALAQAVVFNSTPYEGLVENLKDCLQVYILFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="73233" PGL_stop="72177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73233" e_stop="73152"/>
            <exon e_start="73066" e_stop="72708"/>
            <exon e_start="72638" e_stop="72177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73233" e_stop="73152" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.926">
            <gDNA_intron_boundary i_start="73151" i_stop="73067" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73066" e_stop="72708" e_length="359"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.946">
            <gDNA_intron_boundary i_start="72707" i_stop="72639" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="72638" e_stop="72177" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73233" stop="73152"/>
              <exon start="73066" stop="72708"/>
              <exon start="72638" stop="72177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTAGTCCAGAACGATTTCAATACTCTATTTAATTACATCCATGGCAACAAACCCAACTACTTCACTACAGGAATCCCAG : GTTCTTTCTATGGACGAATATTTCCAAAGGCGTTCCTACACTTTGCCCACAGCTCGATGTCACTTCTGTATCTGTCAAGAATTCCAGAGGAAGTGTTAGACAGAAACTCAGCAGCATGGAACAAAGGAAGAATTCATTACAGTAGCAGTGGAGCAGCAAAAGAAGTAGAGGCAGCATATGCAGATCAGTTCAGAAAAGATATACAAGCCTTTTTGGATGCAAGGGCTCAAGAGCTTGTTCCTGGAGGATTAATGACCATCATTACTCTTACTATTCTTGATGGAGTGCTTCCTTCTGACTCTCCCATGGCCATCAATTTCACCATTCTTGGATCCTGCCTACAGGATATGGCCAACATG : GGTATTATGTCTGAAGAAAAGTTGGATTCGTTCAACCTTCCATACTATTATACATCTCCTATGGAGTTCGAAACACTGATAAAGACACATGGATGCTTTGATATTATAAGGTTTGAGAAGCTGCCAACTCCCCTGAGACAAGTTGTAATTGATGTCCAAACTGCAGTGTTATCTGTGCGAGTAGTAACAGAGCAACTATTTCAGCAACACTTTGGGAATGACATCACTGAGGAATTGTTTCAACGTTACACTGAAAAATTAGACTCGCATCCACTTTTAAAAGATGATAAATATCGCACAGATGCCAGCTACTTTGTCTTTCTCAAGCGTAAAGCCGAAACATCCGAACGAGAGTCCTAGCTTGGTTCTTAAAACTTATCATCTGCGTCCAAACTTTGTTATTGTTCACCTGTTTGCAGAGTGTGATCTTGTTTTATGTGTGCATTTTAATTGTTTTCTGCA</gDNA_template>
            <first_frame> D  L  V  Q  N  D  F  N  T  L  F  N  Y  I  H  G  N  K  P  N  Y  F  T  T  G  I  P   : G  S  F  Y  G  R  I  F  P  K  A  F  L  H  F  A  H  S  S  M  S  L  L  Y  L  S  R  I  P  E  E  V  L  D  R  N  S  A  A  W  N  K  G  R  I  H  Y  S  S  S  G  A  A  K  E  V  E  A  A  Y  A  D  Q  F  R  K  D  I  Q  A  F  L  D  A  R  A  Q  E  L  V  P  G  G  L  M  T  I  I  T  L  T  I  L  D  G  V  L  P  S  D  S  P  M  A  I  N  F  T  I  L  G  S  C  L  Q  D  M  A  N  M  :  G  I  M  S  E  E  K  L  D  S  F  N  L  P  Y  Y  Y  T  S  P  M  E  F  E  T  L  I  K  T  H  G  C  F  D  I  I  R  F  E  K  L  P  T  P  L  R  Q  V  V  I  D  V  Q  T  A  V  L  S  V  R  V  V  T  E  Q  L  F  Q  Q  H  F  G  N  D  I  T  E  E  L  F  Q  R  Y  T  E  K  L  D  S  H  P  L  L  K  D  D  K  Y  R  T  D  A  S  Y  F  V  F  L  K  R  K  A  E  T  S  E  R  E  S  *  L  G  S  *  N  L  S  S  A  S  K  L  C  Y  C  S  P  V  C  R  V  *  S  C  F  M  C  A  F  *  L  F  S  A </first_frame>
            <second_frame>  I  *  S  R  T  I  S  I  L  Y  L  I  T  S  M  A  T  N  P  T  T  S  L  Q  E  S  Q  :  V  L  S  M  D  E  Y  F  Q  R  R  S  Y  T  L  P  T  A  R  C  H  F  C  I  C  Q  E  F  Q  R  K  C  *  T  E  T  Q  Q  H  G  T  K  E  E  F  I  T  V  A  V  E  Q  Q  K  K  *  R  Q  H  M  Q  I  S  S  E  K  I  Y  K  P  F  W  M  Q  G  L  K  S  L  F  L  E  D  *  *  P  S  L  L  L  L  F  L  M  E  C  F  L  L  T  L  P  W  P  S  I  S  P  F  L  D  P  A  Y  R  I  W  P  T  W :   V  L  C  L  K  K  S  W  I  R  S  T  F  H  T  I  I  H  L  L  W  S  S  K  H  *  *  R  H  M  D  A  L  I  L  *  G  L  R  S  C  Q  L  P  *  D  K  L  *  L  M  S  K  L  Q  C  Y  L  C  E  *  *  Q  S  N  Y  F  S  N  T  L  G  M  T  S  L  R  N  C  F  N  V  T  L  K  N  *  T  R  I  H  F  *  K  M  I  N  I  A  Q  M  P  A  T  L  S  F  S  S  V  K  P  K  H  P  N  E  S  P  S  L  V  L  K  T  Y  H  L  R  P  N  F  V  I  V  H  L  F  A  E  C  D  L  V  L  C  V  H  F  N  C  F  L   </second_frame>
            <third_frame>   F  S  P  E  R  F  Q  Y  S  I  *  L  H  P  W  Q  Q  T  Q  L  L  H  Y  R  N  P  R :   F  F  L  W  T  N  I  S  K  G  V  P  T  L  C  P  Q  L  D  V  T  S  V  S  V  K  N  S  R  G  S  V  R  Q  K  L  S  S  M  E  Q  R  K  N  S  L  Q  *  Q  W  S  S  K  R  S  R  G  S  I  C  R  S  V  Q  K  R  Y  T  S  L  F  G  C  K  G  S  R  A  C  S  W  R  I  N  D  H  H  Y  S  Y  Y  S  *  W  S  A  S  F  *  L  S  H  G  H  Q  F  H  H  S  W  I  L  P  T  G  Y  G  Q  H   : G  Y  Y  V  *  R  K  V  G  F  V  Q  P  S  I  L  L  Y  I  S  Y  G  V  R  N  T  D  K  D  T  W  M  L  *  Y  Y  K  V  *  E  A  A  N  S  P  E  T  S  C  N  *  C  P  N  C  S  V  I  C  A  S  S  N  R  A  T  I  S  A  T  L  W  E  *  H  H  *  G  I  V  S  T  L  H  *  K  I  R  L  A  S  T  F  K  R  *  *  I  S  H  R  C  Q  L  L  C  L  S  Q  A  *  S  R  N  I  R  T  R  V  L  A  W  F  L  K  L  I  I  C  V  Q  T  L  L  L  F  T  C  L  Q  S  V  I  L  F  Y  V  C  I  L  I  V  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73233" stop="73152"/>
                    <exon start="73066" stop="72708"/>
                    <exon start="72638" stop="72279"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLVQNDFNTLFNYIHGNKPNYFTTGIPGSFYGRIFPKAFLHFAHSSMSLLYLSRIPEEVLDRNSAAWNKGRIHYSSSGAAKEVEAAYADQFRKDIQAFLDARAQELVPGGLMTIITLTILDGVLPSDSPMAINFTILGSCLQDMANMGIMSEEKLDSFNLPYYYTSPMEFETLIKTHGCFDIIRFEKLPTPLRQVVIDVQTAVLSVRVVTEQLFQQHFGNDITEELFQRYTEKLDSHPLLKDDKYRTDASYFVFLKRKAETSERES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="90416" PGL_stop="91269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90416" e_stop="91269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="90416" e_stop="91269" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90416" stop="91146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90416" stop="91128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90417" stop="91150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90417" stop="91104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90417" stop="91092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90417" stop="91067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90417" stop="90971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90448" stop="91085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90528" stop="91238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90528" stop="91237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90628" stop="91269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90660" stop="91269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAACAAAATATTTTCATTACAAGACTATCTCTTCTTCTTCTTCTTTTTTTCTCTAATCCAAAAAAGCTCAAATCTTGTACTATGGGTAACTATATTTCTTGCACTTTATCAGGGCCAGGAGGCAACAAAGAATCAAGAGGGATAAAAGTTATATTCCCATGTGGTGAAATTAGGCATTTTTATGAACCGATTAAAGCAGCAGAGATTATGATGGAAACTCCTAATTTCTTTCTTGTGAACACTCGATCACTTCATATTGGAAGGAGATTTTCTGCGTTAAATGCAGACGAAGATCTTGAAATGGGAAATGTTTATGTTATGTTTCCGATGAAAAGAGTGAATTCTTTTGTATCAGCAGGTGATATGGGTGCTCTGTTACTTACTGCGAACTCTGTTTCCAAAAGGGTGTCAATAGGGAGTTTAAGAATCTTGCCTGAAGAGAATTATTGTACTTTGCCTAAGTTGAATTTGGATGATATTGAAGATTTTTCAAGTGAAGAATTTAAGCATAGGTTATCTATGTGTAGATCGAAGAAGCCATTGTTGGAAACTATTGCTGAAGAACCAGTTTGTTTAAGATGAGGATTTTGAACAAAATTTTATTAAATCAAATTCTCTTTTGAATTTTAGAAAGGAGAAATTATTCTTTTTAAAAGATTAGGATATGATTTACATTTATCATTTAATTCACAAATTCTGTTGTTTTTTTTTTATATTCAATTGATTTTTTTTGAGTGAGGCTAAGATTGAAGGATCGAGAGCTGAACTTTTGTATTGGGGACATAAAGAAAGTCTATGGTAATTGTAAATTTTTTAACTTTGTGAAAATATTTTATAACATAAAAGAAAAA</gDNA_template>
            <first_frame> Q  K  Q  N  I  F  I  T  R  L  S  L  L  L  L  L  F  F  S  N  P  K  K  L  K  S  C  T  M  G  N  Y  I  S  C  T  L  S  G  P  G  G  N  K  E  S  R  G  I  K  V  I  F  P  C  G  E  I  R  H  F  Y  E  P  I  K  A  A  E  I  M  M  E  T  P  N  F  F  L  V  N  T  R  S  L  H  I  G  R  R  F  S  A  L  N  A  D  E  D  L  E  M  G  N  V  Y  V  M  F  P  M  K  R  V  N  S  F  V  S  A  G  D  M  G  A  L  L  L  T  A  N  S  V  S  K  R  V  S  I  G  S  L  R  I  L  P  E  E  N  Y  C  T  L  P  K  L  N  L  D  D  I  E  D  F  S  S  E  E  F  K  H  R  L  S  M  C  R  S  K  K  P  L  L  E  T  I  A  E  E  P  V  C  L  R  *  G  F  *  T  K  F  Y  *  I  K  F  S  F  E  F  *  K  G  E  I  I  L  F  K  R  L  G  Y  D  L  H  L  S  F  N  S  Q  I  L  L  F  F  F  Y  I  Q  L  I  F  F  E  *  G  *  D  *  R  I  E  S  *  T  F  V  L  G  T  *  R  K  S  M  V  I  V  N  F  L  T  L  *  K  Y  F  I  T  *  K  K   </first_frame>
            <second_frame>  K  N  K  I  F  S  L  Q  D  Y  L  F  F  F  F  F  F  S  L  I  Q  K  S  S  N  L  V  L  W  V  T  I  F  L  A  L  Y  Q  G  Q  E  A  T  K  N  Q  E  G  *  K  L  Y  S  H  V  V  K  L  G  I  F  M  N  R  L  K  Q  Q  R  L  *  W  K  L  L  I  S  F  L  *  T  L  D  H  F  I  L  E  G  D  F  L  R  *  M  Q  T  K  I  L  K  W  E  M  F  M  L  C  F  R  *  K  E  *  I  L  L  Y  Q  Q  V  I  W  V  L  C  Y  L  L  R  T  L  F  P  K  G  C  Q  *  G  V  *  E  S  C  L  K  R  I  I  V  L  C  L  S  *  I  W  M  I  L  K  I  F  Q  V  K  N  L  S  I  G  Y  L  C  V  D  R  R  S  H  C  W  K  L  L  L  K  N  Q  F  V  *  D  E  D  F  E  Q  N  F  I  K  S  N  S  L  L  N  F  R  K  E  K  L  F  F  L  K  D  *  D  M  I  Y  I  Y  H  L  I  H  K  F  C  C  F  F  F  I  F  N  *  F  F  L  S  E  A  K  I  E  G  S  R  A  E  L  L  Y  W  G  H  K  E  S  L  W  *  L  *  I  F  *  L  C  E  N  I  L  *  H  K  R  K  </second_frame>
            <third_frame>   K  T  K  Y  F  H  Y  K  T  I  S  S  S  S  S  F  F  L  *  S  K  K  A  Q  I  L  Y  Y  G  *  L  Y  F  L  H  F  I  R  A  R  R  Q  Q  R  I  K  R  D  K  S  Y  I  P  M  W  *  N  *  A  F  L  *  T  D  *  S  S  R  D  Y  D  G  N  S  *  F  L  S  C  E  H  S  I  T  S  Y  W  K  E  I  F  C  V  K  C  R  R  R  S  *  N  G  K  C  L  C  Y  V  S  D  E  K  S  E  F  F  C  I  S  R  *  Y  G  C  S  V  T  Y  C  E  L  C  F  Q  K  G  V  N  R  E  F  K  N  L  A  *  R  E  L  L  Y  F  A  *  V  E  F  G  *  Y  *  R  F  F  K  *  R  I  *  A  *  V  I  Y  V  *  I  E  E  A  I  V  G  N  Y  C  *  R  T  S  L  F  K  M  R  I  L  N  K  I  L  L  N  Q  I  L  F  *  I  L  E  R  R  N  Y  S  F  *  K  I  R  I  *  F  T  F  I  I  *  F  T  N  S  V  V  F  F  L  Y  S  I  D  F  F  *  V  R  L  R  L  K  D  R  E  L  N  F  C  I  G  D  I  K  K  V  Y  G  N  C  K  F  F  N  F  V  K  I  F  Y  N  I  K  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90416" stop="91000"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKQNIFITRLSLLLLLFFSNPKKLKSCTMGNYISCTLSGPGGNKESRGIKVIFPCGEIRHFYEPIKAAEIMMETPNFFLVNTRSLHIGRRFSALNADEDLEMGNVYVMFPMKRVNSFVSAGDMGALLLTANSVSKRVSIGSLRILPEENYCTLPKLNLDDIEDFSSEEFKHRLSMCRSKKPLLETIAEEPVCLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="98917" PGL_stop="103972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98917" e_stop="99195"/>
            <exon e_start="99770" e_stop="99895"/>
            <exon e_start="100557" e_stop="100757"/>
            <exon e_start="102103" e_stop="102199"/>
            <exon e_start="102757" e_stop="102860"/>
            <exon e_start="103155" e_stop="103206"/>
            <exon e_start="103532" e_stop="103818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.654" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98917" e_stop="99195" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.654">
            <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99770" e_stop="99895" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="99896" i_stop="100556" i_length="661"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100557" e_stop="100757" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102103" e_stop="102199" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.984">
            <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102757" e_stop="102860" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103155" e_stop="103206" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.974">
            <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="103532" e_stop="103818" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98917" stop="99195"/>
              <exon start="99770" stop="99885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98942" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98948" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98948" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98951" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98951" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98951" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98955" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98956" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98958" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98960" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98960" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98964" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98973" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98973" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98973" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98981" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
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              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98982" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98982" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98992" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98998" stop="99195"/>
              <exon start="99770" stop="99895"/>
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              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99003" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99013" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99013" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99019" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99123" stop="99195"/>
              <exon start="99770" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99826" stop="99895"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100605" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100654" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100678" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTCCTCCAACGTACATCACACTCCTCTCTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG : TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTG : GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG : GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG : GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG : GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG : GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTGCAACCGTGGAGTGTT</gDNA_template>
            <first_frame> S  T  P  P  T  Y  I  T  L  L  S  L  P  S  S  S  L  *  G  F  S  S  R  F  I  T  H  G  R  D  E  T  V  T  G  G  P  R  R  R  A  G  P  T  S  G  S  S  R  S  D  F  R  R  R  P  L  C  G  G  R  F  V  V  H  K  E  R  I  R  K  Y  S  R  *  *  A  A  P  R  *  C  Y  *  S  S  *  L  P  S  R  L  Q  :  F  *  Q  G  *  A  G  R  *  R  S  F  F  N  A  W  F  P  K  L  L  G  C  C  L  R  R  *  I  D  K  L  S  *  A  W  S  H  W  *  S  L  :  V  W  W  *  R  Y  G  K  C  C  L  M  D  Q  R  F  V  H  G  H  L  Q  E  S  F  A  K  S  R  S  *  C  R  F  *  A  C  W  A  A  *  D  *  H  F  R  L  E  C  A  *  Y  W  D  W  Q  W  S  A  S  P  R  A  C  *  T  R  :  V  L  *  S  H  W  N  *  L  *  *  R  S  S  *  P  C  K  K  P  C  *  S  *  W  F  H  Q  C  Q  V  L   : G  *  *  H  S  *  D  K  I  G  *  K  V  S  A  S  Y  G  *  G  D  L  R  C  H  W  I  A  S  *  W  S  Y  Q  K  :  D  Y  L  L  G  L  C  F  K  A  C  R  S  W  W  I  I   : G  N  Y  F  M  *  *  Y  K  R  *  I  G  R  R  S  G  Y  S  Q  S  K  K  G  C  L  S  K  T  R  N  S  R  S  L  S  R  S  S  S  F  P  L  S  R  S  R  S  H  I  S  Y  I  H  I  W  R  I  R  R  L  A  C  S  N  C  S  I  P  K  E  L  N  Y  Y  F  L  I  I  L  G  A  S  L  H  F  F  C  N  V  V  Q  P  W  S  V </first_frame>
            <second_frame>  Q  L  L  Q  R  T  S  H  S  S  L  S  L  P  L  L  F  R  V  F  H  L  D  S  S  H  M  A  G  M  R  L  L  P  E  D  P  D  V  A  Q  V  R  P  A  A  A  A  D  L  I  S  D  D  D  R  S  V  A  A  D  S  W  S  I  K  S  E  Y  G  S  T  L  D  D  E  Q  R  H  A  D  A  T  E  A  L  N  Y  R  A  D  Y  S :   S  D  K  D  E  Q  E  G  E  G  V  S  S  M  L  G  F  Q  S  Y  W  D  A  A  Y  A  D  E  L  T  N  F  R  E  H  G  H  T  G  E  V  W :   F  G  G  D  V  M  E  N  V  V  S  W  T  K  G  L  C  M  D  I  C  K  S  H  L  P  N  H  V  A  D  A  D  S  E  P  V  G  Q  R  E  I  D  I  S  G  W  S  V  L  D  I  G  T  G  N  G  L  L  L  Q  E  L  A  K  Q  G :   F  S  D  L  T  G  T  D  Y  S  E  G  A  V  D  L  A  R  S  L  A  D  R  D  G  F  T  N  V  K  F  L  :  V  D  D  I  L  E  T  K  L  D  K  R  F  Q  L  V  M  D  K  G  T  L  D  A  I  G  L  H  P  D  G  P  I  K  R :   I  I  Y  W  D  S  V  S  R  L  V  A  P  G  G  L  L  :  V  I  T  S  C  N  S  T  K  D  E  L  V  E  E  V  D  T  L  N  Q  R  R  V  A  C  Q  R  P  G  T  V  E  A  S  V  D  P  P  P  F  R  Y  L  D  H  V  R  T  Y  P  T  F  T  F  G  G  S  V  G  S  R  V  A  T  V  A  F  L  R  N  *  I  I  T  F  S  S  F  W  V  H  H  C  T  F  F  V  T  S  C  N  R  G  V   </second_frame>
            <third_frame>   N  S  S  N  V  H  H  T  P  L  S  P  F  L  F  S  L  G  F  F  I  S  I  H  H  T  W  P  G  *  D  C  Y  R  R  T  P  T  S  R  R  S  D  Q  R  Q  Q  P  I  *  F  P  T  T  T  A  L  W  R  P  I  R  G  P  *  R  A  N  T  E  V  L  S  M  M  S  S  A  T  L  M  L  L  K  L  L  T  T  E  P  I  T   : V  L  T  R  M  S  R  K  V  K  E  F  L  Q  C  L  V  S  K  A  I  G  M  L  L  T  P  M  N  *  Q  T  F  V  S  M  V  T  L  V  K  F   : G  L  V  V  T  L  W  K  M  L  S  H  G  P  K  V  C  A  W  T  F  A  R  V  I  C  Q  I  T  *  L  M  P  I  L  S  L  L  G  S  V  R  L  T  F  Q  V  G  V  C  L  I  L  G  L  A  M  V  C  F  S  K  S  L  L  N  K   : G  S  L  I  S  L  E  L  T  I  V  K  E  Q  L  T  L  Q  E  A  L  L  I  V  M  V  S  P  M  S  S  S  W :   L  M  T  F  L  R  Q  N  W  I  K  G  F  S  *  L  W  I  R  G  P  *  M  P  L  D  C  I  L  M  V  L  S  K   : G  L  S  T  G  T  L  F  Q  G  L  S  L  L  V  D  Y  W :   *  L  L  H  V  I  V  Q  K  M  N  W  *  K  K  W  I  L  S  I  K  E  G  L  L  V  K  D  Q  E  Q  S  K  P  Q  *  I  L  L  L  S  A  I  S  I  T  F  A  H  I  L  H  S  H  L  E  D  P  *  A  R  V  *  Q  L  *  H  S  *  G  T  E  L  L  L  S  H  H  F  G  C  I  T  A  L  F  L  *  R  R  A  T  V  E  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98918" stop="99195"/>
                    <exon start="99770" stop="99895"/>
                    <exon start="100557" stop="100757"/>
                    <exon start="102103" stop="102199"/>
                    <exon start="102757" stop="102860"/>
                    <exon start="103155" stop="103206"/>
                    <exon start="103532" stop="103747"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLQRTSHSSLSLPLLFRVFHLDSSHMAGMRLLPEDPDVAQVRPAAAADLISDDDRSVAADSWSIKSEYGSTLDDEQRHADATEALNYRADYSSDKDEQEGEGVSSMLGFQSYWDAAYADELTNFREHGHTGEVWFGGDVMENVVSWTKGLCMDICKSHLPNHVADADSEPVGQREIDISGWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAVDLARSLADRDGFTNVKFLVDDILETKLDKRFQLVMDKGTLDAIGLHPDGPIKRIIYWDSVSRLVAPGGLLVITSCNSTKDELVEEVDTLNQRRVACQRPGTVEASVDPPPFRYLDHVRTYPTFTFGGSVGSRVATVAFLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98917" e_stop="99195"/>
            <exon e_start="99770" e_stop="99897"/>
            <exon e_start="100557" e_stop="100757"/>
            <exon e_start="102103" e_stop="102199"/>
            <exon e_start="102757" e_stop="102860"/>
            <exon e_start="103155" e_stop="103206"/>
            <exon e_start="103532" e_stop="103818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.654" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="0.970"/>
          <exon-intron don_prob="0.985" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98917" e_stop="99195" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.654">
            <gDNA_intron_boundary i_start="99196" i_stop="99769" i_length="574"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99770" e_stop="99897" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="99898" i_stop="100556" i_length="659"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="100557" e_stop="100757" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102103" e_stop="102199" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.984">
            <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102757" e_stop="102860" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103155" e_stop="103206" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.974">
            <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="103532" e_stop="103818" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98917" stop="99195"/>
              <exon start="99770" stop="99885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98967" stop="99195"/>
              <exon start="99770" stop="99897"/>
              <exon start="100557" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100605" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100654" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100678" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTCCTCCAACGTACATCACACTCCTCTCTCTCCCTTCCTCTTCTCTTTAGGGTTTTTCATCTCGATTCATCACACATGGCCGGGATGAGACTGTTACCGGAGGACCCCGACGTCGCGCAGGTCCGACCAGCGGCAGCAGCCGATCTGATTTCCGACGACGACCGCTCTGTGGCGGCCGATTCGTGGTCCATAAAGAGCGAATACGGAAGTACTCTCGATGATGAGCAGCGCCACGCTGATGCTACTGAAGCTCTTAACTACCGAGCCGATTACAG : TTCTGACAAGGATGAGCAGGAAGGTGAAGGAGTTTCTTCAATGCTTGGTTTCCAAAGCTATTGGGATGCTGCTTACGCCGATGAATTGACAAACTTTCGTGAGCATGGTCACACTGGTGAAGTTTGGT : GTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG : GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG : GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG : GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG : GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTGCAACCGTGGAGTGTT</gDNA_template>
            <first_frame> S  T  P  P  T  Y  I  T  L  L  S  L  P  S  S  S  L  *  G  F  S  S  R  F  I  T  H  G  R  D  E  T  V  T  G  G  P  R  R  R  A  G  P  T  S  G  S  S  R  S  D  F  R  R  R  P  L  C  G  G  R  F  V  V  H  K  E  R  I  R  K  Y  S  R  *  *  A  A  P  R  *  C  Y  *  S  S  *  L  P  S  R  L  Q  :  F  *  Q  G  *  A  G  R  *  R  S  F  F  N  A  W  F  P  K  L  L  G  C  C  L  R  R  *  I  D  K  L  S  *  A  W  S  H  W  *  S  L  V :   F  G  G  D  V  M  E  N  V  V  S  W  T  K  G  L  C  M  D  I  C  K  S  H  L  P  N  H  V  A  D  A  D  S  E  P  V  G  Q  R  E  I  D  I  S  G  W  S  V  L  D  I  G  T  G  N  G  L  L  L  Q  E  L  A  K  Q  G :   F  S  D  L  T  G  T  D  Y  S  E  G  A  V  D  L  A  R  S  L  A  D  R  D  G  F  T  N  V  K  F  L  :  V  D  D  I  L  E  T  K  L  D  K  R  F  Q  L  V  M  D  K  G  T  L  D  A  I  G  L  H  P  D  G  P  I  K  R :   I  I  Y  W  D  S  V  S  R  L  V  A  P  G  G  L  L  :  V  I  T  S  C  N  S  T  K  D  E  L  V  E  E  V  D  T  L  N  Q  R  R  V  A  C  Q  R  P  G  T  V  E  A  S  V  D  P  P  P  F  R  Y  L  D  H  V  R  T  Y  P  T  F  T  F  G  G  S  V  G  S  R  V  A  T  V  A  F  L  R  N  *  I  I  T  F  S  S  F  W  V  H  H  C  T  F  F  V  T  S  C  N  R  G  V   </first_frame>
            <second_frame>  Q  L  L  Q  R  T  S  H  S  S  L  S  L  P  L  L  F  R  V  F  H  L  D  S  S  H  M  A  G  M  R  L  L  P  E  D  P  D  V  A  Q  V  R  P  A  A  A  A  D  L  I  S  D  D  D  R  S  V  A  A  D  S  W  S  I  K  S  E  Y  G  S  T  L  D  D  E  Q  R  H  A  D  A  T  E  A  L  N  Y  R  A  D  Y  S :   S  D  K  D  E  Q  E  G  E  G  V  S  S  M  L  G  F  Q  S  Y  W  D  A  A  Y  A  D  E  L  T  N  F  R  E  H  G  H  T  G  E  V  W   : C  L  V  V  T  L  W  K  M  L  S  H  G  P  K  V  C  A  W  T  F  A  R  V  I  C  Q  I  T  *  L  M  P  I  L  S  L  L  G  S  V  R  L  T  F  Q  V  G  V  C  L  I  L  G  L  A  M  V  C  F  S  K  S  L  L  N  K   : G  S  L  I  S  L  E  L  T  I  V  K  E  Q  L  T  L  Q  E  A  L  L  I  V  M  V  S  P  M  S  S  S  W :   L  M  T  F  L  R  Q  N  W  I  K  G  F  S  *  L  W  I  R  G  P  *  M  P  L  D  C  I  L  M  V  L  S  K   : G  L  S  T  G  T  L  F  Q  G  L  S  L  L  V  D  Y  W :   *  L  L  H  V  I  V  Q  K  M  N  W  *  K  K  W  I  L  S  I  K  E  G  L  L  V  K  D  Q  E  Q  S  K  P  Q  *  I  L  L  L  S  A  I  S  I  T  F  A  H  I  L  H  S  H  L  E  D  P  *  A  R  V  *  Q  L  *  H  S  *  G  T  E  L  L  L  S  H  H  F  G  C  I  T  A  L  F  L  *  R  R  A  T  V  E  C  </second_frame>
            <third_frame>   N  S  S  N  V  H  H  T  P  L  S  P  F  L  F  S  L  G  F  F  I  S  I  H  H  T  W  P  G  *  D  C  Y  R  R  T  P  T  S  R  R  S  D  Q  R  Q  Q  P  I  *  F  P  T  T  T  A  L  W  R  P  I  R  G  P  *  R  A  N  T  E  V  L  S  M  M  S  S  A  T  L  M  L  L  K  L  L  T  T  E  P  I  T   : V  L  T  R  M  S  R  K  V  K  E  F  L  Q  C  L  V  S  K  A  I  G  M  L  L  T  P  M  N  *  Q  T  F  V  S  M  V  T  L  V  K  F  G  :  V  W  W  *  R  Y  G  K  C  C  L  M  D  Q  R  F  V  H  G  H  L  Q  E  S  F  A  K  S  R  S  *  C  R  F  *  A  C  W  A  A  *  D  *  H  F  R  L  E  C  A  *  Y  W  D  W  Q  W  S  A  S  P  R  A  C  *  T  R  :  V  L  *  S  H  W  N  *  L  *  *  R  S  S  *  P  C  K  K  P  C  *  S  *  W  F  H  Q  C  Q  V  L   : G  *  *  H  S  *  D  K  I  G  *  K  V  S  A  S  Y  G  *  G  D  L  R  C  H  W  I  A  S  *  W  S  Y  Q  K  :  D  Y  L  L  G  L  C  F  K  A  C  R  S  W  W  I  I   : G  N  Y  F  M  *  *  Y  K  R  *  I  G  R  R  S  G  Y  S  Q  S  K  K  G  C  L  S  K  T  R  N  S  R  S  L  S  R  S  S  S  F  P  L  S  R  S  R  S  H  I  S  Y  I  H  I  W  R  I  R  R  L  A  C  S  N  C  S  I  P  K  E  L  N  Y  Y  F  L  I  I  L  G  A  S  L  H  F  F  C  N  V  V  Q  P  W  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99890" stop="99897"/>
                    <exon start="100557" stop="100757"/>
                    <exon start="102103" stop="102199"/>
                    <exon start="102757" stop="102860"/>
                    <exon start="103155" stop="103206"/>
                    <exon start="103532" stop="103747"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLVFGGDVMENVVSWTKGLCMDICKSHLPNHVADADSEPVGQREIDISGWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAVDLARSLADRDGFTNVKFLVDDILETKLDKRFQLVMDKGTLDAIGLHPDGPIKRIIYWDSVSRLVAPGGLLVITSCNSTKDELVEEVDTLNQRRVACQRPGTVEASVDPPPFRYLDHVRTYPTFTFGGSVGSRVATVAFLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="100550" e_stop="100757"/>
            <exon e_start="102103" e_stop="102199"/>
            <exon e_start="102757" e_stop="102860"/>
            <exon e_start="103155" e_stop="103206"/>
            <exon e_start="103532" e_stop="103972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="0.947"/>
          <exon-intron don_prob="0.985" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="100550" e_stop="100757" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="100758" i_stop="102102" i_length="1345"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102103" e_stop="102199" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.984">
            <gDNA_intron_boundary i_start="102200" i_stop="102756" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102757" e_stop="102860" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102861" i_stop="103154" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103155" e_stop="103206" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.974">
            <gDNA_intron_boundary i_start="103207" i_stop="103531" i_length="325"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103532" e_stop="103972" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100550" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553742" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100605" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100654" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100678" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100757"/>
              <exon start="102103" stop="102199"/>
              <exon start="102757" stop="102860"/>
              <exon start="103155" stop="103206"/>
              <exon start="103532" stop="103596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATAGGTTTGGTGGTGACGTTATGGAAAATGTTGTCTCATGGACCAAAGGTTTGTGCATGGACATTTGCAAGAGTCATTTGCCAAATCACGTAGCTGATGCCGATTCTGAGCCTGTTGGGCAGCGTGAGATTGACATTTCAGGTTGGAGTGTGCTTGATATTGGGACTGGCAATGGTCTGCTTCTCCAAGAGCTTGCTAAACAAGG : GTTCTCTGATCTCACTGGAACTGACTATAGTGAAGGAGCAGTTGACCTTGCAAGAAGCCTTGCTGATCGTGATGGTTTCACCAATGTCAAGTTCTTG : GTTGATGACATTCTTGAGACAAAATTGGATAAAAGGTTTCAGCTAGTTATGGATAAGGGGACCTTAGATGCCATTGGATTGCATCCTGATGGTCCTATCAAAAG : GATTATCTACTGGGACTCTGTTTCAAGGCTTGTCGCTCCTGGTGGATTATTG : GTAATTACTTCATGTAATAGTACAAAAGATGAATTGGTAGAAGAAGTGGATACTCTCAATCAAAGAAGGGTTGCTTGTCAAAGACCAGGAACAGTCGAAGCCTCAGTAGATCCTCCTCCTTTCCGCTATCTCGATCACGTTCGCACATATCCTACATTCACATTTGGAGGATCCGTAGGCTCGCGTGTAGCAACTGTAGCATTCCTAAGGAACTGAATTATTACTTTCTCATCATTTTGGGTGCATCACTGCACTTTTTTTGTAACGTCGTGCAACCGTGGAGTGTTTCTTTGGGAAGACCATTTCTGATTTATGCAAGGTGAAAGATTAATTGATCTAGTTTTTGTATAGGGGGTAACGTTAGTGCTACATTAACAACGTTGATCATCAGATGACTCGTGTTAGATGGAAAAATTGTTCTTCAAGTCAATGTTATGTCAC</gDNA_template>
            <first_frame> C  I  G  L  V  V  T  L  W  K  M  L  S  H  G  P  K  V  C  A  W  T  F  A  R  V  I  C  Q  I  T  *  L  M  P  I  L  S  L  L  G  S  V  R  L  T  F  Q  V  G  V  C  L  I  L  G  L  A  M  V  C  F  S  K  S  L  L  N  K   : G  S  L  I  S  L  E  L  T  I  V  K  E  Q  L  T  L  Q  E  A  L  L  I  V  M  V  S  P  M  S  S  S  W :   L  M  T  F  L  R  Q  N  W  I  K  G  F  S  *  L  W  I  R  G  P  *  M  P  L  D  C  I  L  M  V  L  S  K   : G  L  S  T  G  T  L  F  Q  G  L  S  L  L  V  D  Y  W :   *  L  L  H  V  I  V  Q  K  M  N  W  *  K  K  W  I  L  S  I  K  E  G  L  L  V  K  D  Q  E  Q  S  K  P  Q  *  I  L  L  L  S  A  I  S  I  T  F  A  H  I  L  H  S  H  L  E  D  P  *  A  R  V  *  Q  L  *  H  S  *  G  T  E  L  L  L  S  H  H  F  G  C  I  T  A  L  F  L  *  R  R  A  T  V  E  C  F  F  G  K  T  I  S  D  L  C  K  V  K  D  *  L  I  *  F  L  Y  R  G  *  R  *  C  Y  I  N  N  V  D  H  Q  M  T  R  V  R  W  K  N  C  S  S  S  Q  C  Y  V   </first_frame>
            <second_frame>  V  *  V  W  W  *  R  Y  G  K  C  C  L  M  D  Q  R  F  V  H  G  H  L  Q  E  S  F  A  K  S  R  S  *  C  R  F  *  A  C  W  A  A  *  D  *  H  F  R  L  E  C  A  *  Y  W  D  W  Q  W  S  A  S  P  R  A  C  *  T  R  :  V  L  *  S  H  W  N  *  L  *  *  R  S  S  *  P  C  K  K  P  C  *  S  *  W  F  H  Q  C  Q  V  L   : G  *  *  H  S  *  D  K  I  G  *  K  V  S  A  S  Y  G  *  G  D  L  R  C  H  W  I  A  S  *  W  S  Y  Q  K  :  D  Y  L  L  G  L  C  F  K  A  C  R  S  W  W  I  I   : G  N  Y  F  M  *  *  Y  K  R  *  I  G  R  R  S  G  Y  S  Q  S  K  K  G  C  L  S  K  T  R  N  S  R  S  L  S  R  S  S  S  F  P  L  S  R  S  R  S  H  I  S  Y  I  H  I  W  R  I  R  R  L  A  C  S  N  C  S  I  P  K  E  L  N  Y  Y  F  L  I  I  L  G  A  S  L  H  F  F  C  N  V  V  Q  P  W  S  V  S  L  G  R  P  F  L  I  Y  A  R  *  K  I  N  *  S  S  F  C  I  G  G  N  V  S  A  T  L  T  T  L  I  I  R  *  L  V  L  D  G  K  I  V  L  Q  V  N  V  M  S  </second_frame>
            <third_frame>   Y  R  F  G  G  D  V  M  E  N  V  V  S  W  T  K  G  L  C  M  D  I  C  K  S  H  L  P  N  H  V  A  D  A  D  S  E  P  V  G  Q  R  E  I  D  I  S  G  W  S  V  L  D  I  G  T  G  N  G  L  L  L  Q  E  L  A  K  Q  G :   F  S  D  L  T  G  T  D  Y  S  E  G  A  V  D  L  A  R  S  L  A  D  R  D  G  F  T  N  V  K  F  L  :  V  D  D  I  L  E  T  K  L  D  K  R  F  Q  L  V  M  D  K  G  T  L  D  A  I  G  L  H  P  D  G  P  I  K  R :   I  I  Y  W  D  S  V  S  R  L  V  A  P  G  G  L  L  :  V  I  T  S  C  N  S  T  K  D  E  L  V  E  E  V  D  T  L  N  Q  R  R  V  A  C  Q  R  P  G  T  V  E  A  S  V  D  P  P  P  F  R  Y  L  D  H  V  R  T  Y  P  T  F  T  F  G  G  S  V  G  S  R  V  A  T  V  A  F  L  R  N  *  I  I  T  F  S  S  F  W  V  H  H  C  T  F  F  V  T  S  C  N  R  G  V  F  L  W  E  D  H  F  *  F  M  Q  G  E  R  L  I  D  L  V  F  V  *  G  V  T  L  V  L  H  *  Q  R  *  S  S  D  D  S  C  *  M  E  K  L  F  F  K  S  M  L  C  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100552" stop="100757"/>
                    <exon start="102103" stop="102199"/>
                    <exon start="102757" stop="102860"/>
                    <exon start="103155" stop="103206"/>
                    <exon start="103532" stop="103747"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFGGDVMENVVSWTKGLCMDICKSHLPNHVADADSEPVGQREIDISGWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAVDLARSLADRDGFTNVKFLVDDILETKLDKRFQLVMDKGTLDAIGLHPDGPIKRIIYWDSVSRLVAPGGLLVITSCNSTKDELVEEVDTLNQRRVACQRPGTVEASVDPPPFRYLDHVRTYPTFTFGGSVGSRVATVAFLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="113490" PGL_stop="115720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113490" e_stop="113618"/>
            <exon e_start="114490" e_stop="115720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.789" e_score="0.915"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="113490" e_stop="113618" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.789">
            <gDNA_intron_boundary i_start="113619" i_stop="114489" i_length="871"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="114490" e_stop="115720" e_length="1231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113490" stop="113618"/>
              <exon start="114490" stop="115227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114648" stop="114828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114879" stop="115666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115168" stop="115720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCCAATTCCTTCAATCAAACCCTATATATAAAGGAGTAGATACGCCGCCCCATTCATTCACATTTATATATTTTATCAACCCTAAATCTTTATTTACAAATTCCTACACTTTCTTCATTCAATCG : GTGGGCATCTTTATCTGTGTGGGTTTCAAGTTGTAGTTTCTCAAGTTGAAGCTTATTTTATGTCCGAACAAGCCACCATCTGTTTGGGATACGTTGGATTGCTTGGAGAATATTGTCCAACGTTAAGAAGAAAGTGTTCTGATAGGGTTGATGACTGTATGCATCTTGACTTGTTTCAGCAAGGACACTTAGAGCTTAGTGGTTGCACCCAGATACAACCTTTTCTCAACAAATTTTGGGCCAAAGGATCATCTGGAAATCCCTAACACCTTATTTAGGAATTTTCACTGAATCAAAAATGGCTTTGCAGAATATTGGAGCTGGCAACAGTGATGATGCCTTCTACAGGTATAAGATGCCGAGGATGATTACCAAGATAGAGGGGCGTGGGAATGGCATCAAGACAAACATCGTCAACATGGTTGACGTTGCAAAAGCTCTAGCGCGGCCAGCATCTTACACCACAAAACATTTTGGGTGCGAGCTTGGAGCTCAGTCGAAGTTTGATGAAAAAACTGGGACCTCCCTTGTCAATGGAGCTCATGATACTGCCAAGCTTGCTGGTCTTCTTGAGATTTTCATCAAGAAATATGTTCAGTGCTATGGGTGTGGAAACCCTGAAACTGAGATCCTTATCACTAAAACTCAGATGATCCAACTGAAGTGTGCTGCATGTGGTTTTATTTCTGATGTAGACATGAGAGACAAGCTGACAACCTTTATTCTTAAAAACCCACCCGAGTCTAAGAAGGGAGCCAAAGACAAGAAGGCAATGAGAAGAGCTGAAAAGGAGCGTCTAAAGGAAGGTGAAGCTGCTGATGAAGAGCTGAAGAAGCTTAAGAAAGAAACAAAGAAAAAGGTTTCTTCCAAGGAAGCCACTGCAAAACCTACCTTGAAAAAGAAAGCTAGCGGCTCTGATGATGATCATGCATCCCCACCCAAAAGGCATGTGAATGTCAGGGAAGAGGAGGAAGAAGATGATGATGATGTTCAATGGCAAACTGATACATCAATGGAAGCTGCACAACAGCGCATACAGGAACAGTTGAGTGCTGTGACTGCTGAAATGGTTATGCTCTCCACAAATGAGACAGAGAAGAAGCCCAAGGCAGCTACTACGCAAGCTCGCCAAAGTTCCAAGGTTGTTTCTGCACCCTCTGAGGATGATCCCAAAACTGAGAATGGAGAGAAAACATCCGAGACTCTTGTTGAGGATGTGAAAATACATCTG</gDNA_template>
            <first_frame> S  L  Q  F  L  Q  S  N  P  I  Y  K  G  V  D  T  P  P  H  S  F  T  F  I  Y  F  I  N  P  K  S  L  F  T  N  S  Y  T  F  F  I  Q  S  :  V  G  I  F  I  C  V  G  F  K  L  *  F  L  K  L  K  L  I  L  C  P  N  K  P  P  S  V  W  D  T  L  D  C  L  E  N  I  V  Q  R  *  E  E  S  V  L  I  G  L  M  T  V  C  I  L  T  C  F  S  K  D  T  *  S  L  V  V  A  P  R  Y  N  L  F  S  T  N  F  G  P  K  D  H  L  E  I  P  N  T  L  F  R  N  F  H  *  I  K  N  G  F  A  E  Y  W  S  W  Q  Q  *  *  C  L  L  Q  V  *  D  A  E  D  D  Y  Q  D  R  G  A  W  E  W  H  Q  D  K  H  R  Q  H  G  *  R  C  K  S  S  S  A  A  S  I  L  H  H  K  T  F  W  V  R  A  W  S  S  V  E  V  *  *  K  N  W  D  L  P  C  Q  W  S  S  *  Y  C  Q  A  C  W  S  S  *  D  F  H  Q  E  I  C  S  V  L  W  V  W  K  P  *  N  *  D  P  Y  H  *  N  S  D  D  P  T  E  V  C  C  M  W  F  Y  F  *  C  R  H  E  R  Q  A  D  N  L  Y  S  *  K  P  T  R  V  *  E  G  S  Q  R  Q  E  G  N  E  K  S  *  K  G  A  S  K  G  R  *  S  C  *  *  R  A  E  E  A  *  E  R  N  K  E  K  G  F  F  Q  G  S  H  C  K  T  Y  L  E  K  E  S  *  R  L  *  *  *  S  C  I  P  T  Q  K  A  C  E  C  Q  G  R  G  G  R  R  *  *  *  C  S  M  A  N  *  Y  I  N  G  S  C  T  T  A  H  T  G  T  V  E  C  C  D  C  *  N  G  Y  A  L  H  K  *  D  R  E  E  A  Q  G  S  Y  Y  A  S  S  P  K  F  Q  G  C  F  C  T  L  *  G  *  S  Q  N  *  E  W  R  E  N  I  R  D  S  C  *  G  C  E  N  T  S  </first_frame>
            <second_frame>  L  S  N  S  F  N  Q  T  L  Y  I  K  E  *  I  R  R  P  I  H  S  H  L  Y  I  L  S  T  L  N  L  Y  L  Q  I  P  T  L  S  S  F  N  R :   W  A  S  L  S  V  W  V  S  S  C  S  F  S  S  *  S  L  F  Y  V  R  T  S  H  H  L  F  G  I  R  W  I  A  W  R  I  L  S  N  V  K  K  K  V  F  *  *  G  *  *  L  Y  A  S  *  L  V  S  A  R  T  L  R  A  *  W  L  H  P  D  T  T  F  S  Q  Q  I  L  G  Q  R  I  I  W  K  S  L  T  P  Y  L  G  I  F  T  E  S  K  M  A  L  Q  N  I  G  A  G  N  S  D  D  A  F  Y  R  Y  K  M  P  R  M  I  T  K  I  E  G  R  G  N  G  I  K  T  N  I  V  N  M  V  D  V  A  K  A  L  A  R  P  A  S  Y  T  T  K  H  F  G  C  E  L  G  A  Q  S  K  F  D  E  K  T  G  T  S  L  V  N  G  A  H  D  T  A  K  L  A  G  L  L  E  I  F  I  K  K  Y  V  Q  C  Y  G  C  G  N  P  E  T  E  I  L  I  T  K  T  Q  M  I  Q  L  K  C  A  A  C  G  F  I  S  D  V  D  M  R  D  K  L  T  T  F  I  L  K  N  P  P  E  S  K  K  G  A  K  D  K  K  A  M  R  R  A  E  K  E  R  L  K  E  G  E  A  A  D  E  E  L  K  K  L  K  K  E  T  K  K  K  V  S  S  K  E  A  T  A  K  P  T  L  K  K  K  A  S  G  S  D  D  D  H  A  S  P  P  K  R  H  V  N  V  R  E  E  E  E  E  D  D  D  D  V  Q  W  Q  T  D  T  S  M  E  A  A  Q  Q  R  I  Q  E  Q  L  S  A  V  T  A  E  M  V  M  L  S  T  N  E  T  E  K  K  P  K  A  A  T  T  Q  A  R  Q  S  S  K  V  V  S  A  P  S  E  D  D  P  K  T  E  N  G  E  K  T  S  E  T  L  V  E  D  V  K  I  H  L </second_frame>
            <third_frame>   S  P  I  P  S  I  K  P  Y  I  *  R  S  R  Y  A  A  P  F  I  H  I  Y  I  F  Y  Q  P  *  I  F  I  Y  K  F  L  H  F  L  H  S  I   : G  G  H  L  Y  L  C  G  F  Q  V  V  V  S  Q  V  E  A  Y  F  M  S  E  Q  A  T  I  C  L  G  Y  V  G  L  L  G  E  Y  C  P  T  L  R  R  K  C  S  D  R  V  D  D  C  M  H  L  D  L  F  Q  Q  G  H  L  E  L  S  G  C  T  Q  I  Q  P  F  L  N  K  F  W  A  K  G  S  S  G  N  P  *  H  L  I  *  E  F  S  L  N  Q  K  W  L  C  R  I  L  E  L  A  T  V  M  M  P  S  T  G  I  R  C  R  G  *  L  P  R  *  R  G  V  G  M  A  S  R  Q  T  S  S  T  W  L  T  L  Q  K  L  *  R  G  Q  H  L  T  P  Q  N  I  L  G  A  S  L  E  L  S  R  S  L  M  K  K  L  G  P  P  L  S  M  E  L  M  I  L  P  S  L  L  V  F  L  R  F  S  S  R  N  M  F  S  A  M  G  V  E  T  L  K  L  R  S  L  S  L  K  L  R  *  S  N  *  S  V  L  H  V  V  L  F  L  M  *  T  *  E  T  S  *  Q  P  L  F  L  K  T  H  P  S  L  R  R  E  P  K  T  R  R  Q  *  E  E  L  K  R  S  V  *  R  K  V  K  L  L  M  K  S  *  R  S  L  R  K  K  Q  R  K  R  F  L  P  R  K  P  L  Q  N  L  P  *  K  R  K  L  A  A  L  M  M  I  M  H  P  H  P  K  G  M  *  M  S  G  K  R  R  K  K  M  M  M  M  F  N  G  K  L  I  H  Q  W  K  L  H  N  S  A  Y  R  N  S  *  V  L  *  L  L  K  W  L  C  S  P  Q  M  R  Q  R  R  S  P  R  Q  L  L  R  K  L  A  K  V  P  R  L  F  L  H  P  L  R  M  I  P  K  L  R  M  E  R  K  H  P  R  L  L  L  R  M  *  K  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114689" stop="115720"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLHPDTTFSQQILGQRIIWKSLTPYLGIFTESKMALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDVAKALARPASYTTKHFGCELGAQSKFDEKTGTSLVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETEILITKTQMIQLKCAACGFISDVDMRDKLTTFILKNPPESKKGAKDKKAMRRAEKERLKEGEAADEELKKLKKETKKKVSSKEATAKPTLKKKASGSDDDHASPPKRHVNVREEEEEDDDDVQWQTDTSMEAAQQRIQEQLSAVTAEMVMLSTNETEKKPKAATTQARQSSKVVSAPSEDDPKTENGEKTSETLVEDVKIHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113645" e_stop="114118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113645" e_stop="114118" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113645" stop="114118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTACTTTTGATCATTCCGAACTGTTTGATTCAATGCTGCTTTCCTGTTTGTAATTTTGATGATTTATCGATGTGTTTTGTACTTGTCTGGTTTTGGTATAATGGCAATGGCGGAGTTATTTGTATCGAATTTATATGTATAGCCATTGTCGATGGTTCTTTTCTGTTTCTCTCTCATTTATATGATTGAGCTAGTTATGAGTATCTAGCAATTGATAGGTATCTTAATTTTTGATGATTGGATGCTTAATTTATGAAATTTTAGATGGTCGGGGCTTGGAACCCTAATTTATGAAGCTATTGCAATTAGTAGGCTATACGTTTCGAAGAACTCTGATCAATTCTATATTAAAACTAGGCCATTAGTGAGCAACATATCTCTTGAGTTCAATTTTTTATTTACAATACTAATAGGTTTCTCTTGTAGCAAGTGTTACGGTAGTTTGCTATTCAGAGGCTTACACATGTGAG</gDNA_template>
            <first_frame> F  S  T  F  D  H  S  E  L  F  D  S  M  L  L  S  C  L  *  F  *  *  F  I  D  V  F  C  T  C  L  V  L  V  *  W  Q  W  R  S  Y  L  Y  R  I  Y  M  Y  S  H  C  R  W  F  F  S  V  S  L  S  F  I  *  L  S  *  L  *  V  S  S  N  *  *  V  S  *  F  L  M  I  G  C  L  I  Y  E  I  L  D  G  R  G  L  E  P  *  F  M  K  L  L  Q  L  V  G  Y  T  F  R  R  T  L  I  N  S  I  L  K  L  G  H  *  *  A  T  Y  L  L  S  S  I  F  Y  L  Q  Y  *  *  V  S  L  V  A  S  V  T  V  V  C  Y  S  E  A  Y  T  C  E </first_frame>
            <second_frame>  S  L  L  L  I  I  P  N  C  L  I  Q  C  C  F  P  V  C  N  F  D  D  L  S  M  C  F  V  L  V  W  F  W  Y  N  G  N  G  G  V  I  C  I  E  F  I  C  I  A  I  V  D  G  S  F  L  F  L  S  H  L  Y  D  *  A  S  Y  E  Y  L  A  I  D  R  Y  L  N  F  *  *  L  D  A  *  F  M  K  F  *  M  V  G  A  W  N  P  N  L  *  S  Y  C  N  *  *  A  I  R  F  E  E  L  *  S  I  L  Y  *  N  *  A  I  S  E  Q  H  I  S  *  V  Q  F  F  I  Y  N  T  N  R  F  L  L  *  Q  V  L  R  *  F  A  I  Q  R  L  T  H  V   </second_frame>
            <third_frame>   L  Y  F  *  S  F  R  T  V  *  F  N  A  A  F  L  F  V  I  L  M  I  Y  R  C  V  L  Y  L  S  G  F  G  I  M  A  M  A  E  L  F  V  S  N  L  Y  V  *  P  L  S  M  V  L  F  C  F  S  L  I  Y  M  I  E  L  V  M  S  I  *  Q  L  I  G  I  L  I  F  D  D  W  M  L  N  L  *  N  F  R  W  S  G  L  G  T  L  I  Y  E  A  I  A  I  S  R  L  Y  V  S  K  N  S  D  Q  F  Y  I  K  T  R  P  L  V  S  N  I  S  L  E  F  N  F  L  F  T  I  L  I  G  F  S  C  S  K  C  Y  G  S  L  L  F  R  G  L  H  M  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113905" stop="114117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRWSGLGTLIYEAIAISRLYVSKNSDQFYIKTRPLVSNISLEFNFLFTILIGFSCSKCYGSLLFRGLHM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="118369" PGL_stop="119742"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118369" e_stop="118509"/>
            <exon e_start="119354" e_stop="119742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.799" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118369" e_stop="118509" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.799">
            <gDNA_intron_boundary i_start="118510" i_stop="119353" i_length="844"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119354" e_stop="119742" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118369" stop="118509"/>
              <exon start="119354" stop="119742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCTTCAATTCCTTCAAACCCTATATATTAAGGAATCTGTACGCCGCCTCATCTATTCACCTTTCTATATATATATTGTATGTATTATTAACCCTAAAATCTTCCTCTACCAGTTCCTCCAAATTCTTCAATCAATCG : GTTGCGGGCGGGGTTTCAAGTTCTAGTTTCTCAAGTTGAAACTTCTTTTATGTCCGAACAAGCCACCCTTTATTTGGGATCCGTTGGATTGCTTGGAGAATATTGTCCAACGTCGAGAAGAAAGTGTTCTGATAGGGTTGATGACTGTATGCATCTTGACTTGTTTCAGCAAGGACACTTAGAGCTTAGTGGTTGCACCCAGATACAACCTTCTCTCAACAAATTTTGGGCCAAAGGATCATCTGGAAATCCCTAACACCTTATTTAGGAATTTTCACTGAATCAGAAATGGCTTTGCAGAATATTGGAGCTGGCAACAGTGATGATGCCTTCTACAGGTATAAGATGCCGAGGATGATTACCAAGATAGAGGGGCGTGGGAATGGCAT</gDNA_template>
            <first_frame> L  L  F  N  S  F  K  P  Y  I  L  R  N  L  Y  A  A  S  S  I  H  L  S  I  Y  I  L  Y  V  L  L  T  L  K  S  S  S  T  S  S  S  K  F  F  N  Q  S  :  V  A  G  G  V  S  S  S  S  F  S  S  *  N  F  F  Y  V  R  T  S  H  P  L  F  G  I  R  W  I  A  W  R  I  L  S  N  V  E  K  K  V  F  *  *  G  *  *  L  Y  A  S  *  L  V  S  A  R  T  L  R  A  *  W  L  H  P  D  T  T  F  S  Q  Q  I  L  G  Q  R  I  I  W  K  S  L  T  P  Y  L  G  I  F  T  E  S  E  M  A  L  Q  N  I  G  A  G  N  S  D  D  A  F  Y  R  Y  K  M  P  R  M  I  T  K  I  E  G  R  G  N  G   </first_frame>
            <second_frame>  F  S  S  I  P  S  N  P  I  Y  *  G  I  C  T  P  P  H  L  F  T  F  L  Y  I  Y  C  M  Y  Y  *  P  *  N  L  P  L  P  V  P  P  N  S  S  I  N  R :   L  R  A  G  F  Q  V  L  V  S  Q  V  E  T  S  F  M  S  E  Q  A  T  L  Y  L  G  S  V  G  L  L  G  E  Y  C  P  T  S  R  R  K  C  S  D  R  V  D  D  C  M  H  L  D  L  F  Q  Q  G  H  L  E  L  S  G  C  T  Q  I  Q  P  S  L  N  K  F  W  A  K  G  S  S  G  N  P  *  H  L  I  *  E  F  S  L  N  Q  K  W  L  C  R  I  L  E  L  A  T  V  M  M  P  S  T  G  I  R  C  R  G  *  L  P  R  *  R  G  V  G  M  A  </second_frame>
            <third_frame>   S  L  Q  F  L  Q  T  L  Y  I  K  E  S  V  R  R  L  I  Y  S  P  F  Y  I  Y  I  V  C  I  I  N  P  K  I  F  L  Y  Q  F  L  Q  I  L  Q  S  I   : G  C  G  R  G  F  K  F  *  F  L  K  L  K  L  L  L  C  P  N  K  P  P  F  I  W  D  P  L  D  C  L  E  N  I  V  Q  R  R  E  E  S  V  L  I  G  L  M  T  V  C  I  L  T  C  F  S  K  D  T  *  S  L  V  V  A  P  R  Y  N  L  L  S  T  N  F  G  P  K  D  H  L  E  I  P  N  T  L  F  R  N  F  H  *  I  R  N  G  F  A  E  Y  W  S  W  Q  Q  *  *  C  L  L  Q  V  *  D  A  E  D  D  Y  Q  D  R  G  A  W  E  W  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194N24.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118469" stop="118509"/>
                    <exon start="119354" stop="119609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLPLPVPPNSSINRLRAGFQVLVSQVETSFMSEQATLYLGSVGLLGEYCPTSRRKCSDRVDDCMHLDLFQQGHLELSGCTQIQPSLNKFWAKGSSGNP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 188 chains have been computed
$ 
$ memory statistics:
$ 159384 bytes spliced alignments in total
$ 75 spliced alignments have been stored
$ 2125 bytes was the average size of a spliced alignment
$ 18752 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1875 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 208 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:53:18
-->
