<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:05:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1555" ref_strand="+" ref_description="T1555">
      <seq>gagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtggaggagaaacctgttgttactgtggagctaagggatgggccttatagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5361" stop="7946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5661" g_stop="5799" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="337" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="389" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7646" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="489" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="T1555" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="T1555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5661" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCC</genome_strand>
        <mrna_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g66530" ref_strand="+" ref_description="C2_At5g66530">
      <seq>aaaaagagaacaattttccagttgaaagcaaaaaagactaacctttttgcaaatcctttcgtaatcttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagttaatcgatactcagggatgacatttgcaagtgtgaagtctactgaagggttgggaaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgcttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacgtgagttggacccttgttagttctgaaaatgtggaggagaaacctgttgttactgtggagctaagggatggcccttacagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctctcaacggaactcacagttaaaaatactgacaacaaaccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttagtggtttaaagggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcnagggaaagaggaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5353" stop="9012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5667" g_stop="5799" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="151" r_length="135" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="238" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="349" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="401" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="539" r_length="138" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="638" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="735" r_length="97" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="C2_At5g66530" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g66530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5667" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTGAAAGCAAAAAAGACTTAC-TTTTTGCAAATCC-TTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG</genome_strand>
        <mrna_strand>TCCAGTTGAAAGCAAAAAAGACTAACCTTTTTGCAAATCCTTTCGTAATCTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTTAATCG.................................................................................................................................................................................................................................ATACTCAGGGATGACATTTGCAAGTGTGAAGTCTACTGAAGGGTTGGGAAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGCTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACGTGAGTTGGACCCTTGTTAGTTCTGAAAATGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGCCCTTACAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTCTCAACGGAACTCACAGTTAAAAATACTGACAACAAACCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAGTGGTTTAAAGGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCNAGGG-AAAGAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g18245" ref_strand="+" ref_description="C2_At2g18245">
      <seq>ctcattcatggaagcctctatcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaattacaagccccttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatagcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccccttcccatcgcaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatcgggtacccaagataaattattcaattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaacacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatattgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttgggaagaaattggaggagaggattgctgtgttggcaaatgagcttgctttgtggttgtcggaatccgataaggatggtcgtgagcggtgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15477" stop="14274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15177" g_stop="14574" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="C2_At2g18245" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At2g18245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15177" e_stop="14574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGAT</genome_strand>
        <mrna_strand>CTCATTC-ATGGAAGCCTCTATCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATTACAAGCCCCTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATAGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCCTTCCCATCGCAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCGGGTACCCAAGATAAATTATTCAATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAACACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATTGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGGAAGAAATTGGAGGAGAGGATTGCTGTGTTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAAGGATGGTCGTGAGCGGTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1838" ref_strand="+" ref_description="T1838">
      <seq>gcctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15481" stop="14292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15182" g_stop="14592" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="T1838" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="T1838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15182" e_stop="14592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGG</genome_strand>
        <mrna_strand>GCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG131-F" ref_strand="+" ref_description="TG131-F">
      <seq>cggggatctctaagtcattcagggtcaagagagaacccatctcaacttattagtttccaatagaacaagctttatagacatgctcaattagagaaattaaggccagcacaagcacaactatggcctaacggtcaacgaaactgggcagaaaaattagatgatgctttccaggtggtggatagagctaccaaaacatgaacaccagcgttaaaatttatttttttttttttaaaaaaaaaaagtagaatttgcgtttttacttcccgcagcgtttgcagcaaaaaattctccctaaatttgtaaaaagcaactcaacatttccaaagtcccatacgaaaaaatggagtgaatgcaaagcactaatcacattttcaaagaaaaaggaatcgaaaaataaacagagaaaatgaagaagatcataccagccctcgtccgaagaatcatagccagaagtagactgccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="40753" stop="39690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40440" g_stop="39990" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="465" r_length="443" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="TG131-F" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="TG131-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40440" e_stop="39990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCAAGATGAGAAACCACAATCTCAACTTATTAGTTTCCAATAGAAACAAAGCTTTATAGACATGCTCAAATTAGAGAAATTAAGGCCAGCACAAGCACAACTATGGCCTAACGGTCAACGAAACTGGGCAGAAAAATTAGATGATGCTTTCCAGGTGGTGGATAGAGCTACCAAAACATGAACACCAGCGTTAAAATTTATTTTTTTTTTTTAAAAAAAAAAAAGTAGAATTTGCGTTTTTACTTCCCGCAGCGTTTGCAGCAAAAAATTCTCCCTAAATTTGTAAAAAGCAACTCAACATTTCCAAAGTCCCATACGAAAAAATGGAGTGAATGCAAAGCACTAATCACATTTTCAAAGAAAAAGGAATCGAAAAATAAACAGAGAAAATGAAGAAGATCATACCAGCCCTCGTCCGAAGAATCATAGCCAGAAGTAGACTGCCGAA</genome_strand>
        <mrna_strand>GGT-CAAGA-GAG-AACC-C-ATCTCAACTTATTAGTTTCCAATAG-AAC-AAGCTTTATAGACATGCTC-AATTAGAGAAATTAAGGCCAGCACAAGCACAACTATGGCCTAACGGTCAACGAAACTGGGCAGAAAAATTAGATGATGCTTTCCAGGTGGTGGATAGAGCTACCAAAACATGAACACCAGCGTTAAAATTTATTTTTTTTTTTTTAAAAAAAAAAAGTAGAATTTGCGTTTTTACTTCCCGCAGCGTTTGCAGCAAAAAATTCTCCCTAAATTTGTAAAAAGCAACTCAACATTTCCAAAGTCCCATACGAAAAAATGGAGTGAATGCAAAGCACTAATCACATTTTCAAAGAAAAAGGAATCGAAAAATAAACAGAGAAAATGAAGAAGATCATACCAGCCCTCGTCCGAAGAATCATAGCCAGAAGTAGACTGCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5661" PGL_stop="8711"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5661" e_stop="5799"/>
            <exon e_start="6025" e_stop="6111"/>
            <exon e_start="6835" e_stop="6945"/>
            <exon e_start="7204" e_stop="7255"/>
            <exon e_start="7547" e_stop="7684"/>
            <exon e_start="8184" e_stop="8282"/>
            <exon e_start="8614" e_stop="8711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.552" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.996" e_score="0.942"/>
          <exon-intron don_prob="0.953" acc_prob="0.944" e_score="0.970"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5661" e_stop="5799" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6025" e_stop="6111" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6835" e_stop="6945" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.552" acc_prob="0.963">
            <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7204" e_stop="7255" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="0.942">
            <gDNA_exon_boundary e_start="7547" e_stop="7684" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="8184" e_stop="8282" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.944">
            <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331"/>
          </intron>
          <exon e_serial="7" e_score="0.959">
            <gDNA_exon_boundary e_start="8614" e_stop="8711" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5661" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5667" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g66530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG : ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG : TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG : TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG : CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG : ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC : GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG</gDNA_template>
            <first_frame> E  N  F  S  *  K  Q  K  R  L  T  F  C  K  S  L  V  I  L  P  S  N  R  R  W  Q  H  C  L  *  P  G  L  A  L  P  *  P  P  Q  N  F  G  E  S  I   : D  I  Q  E  W  H  L  Q  V  *  N  L  L  K  G  W  G  I  Y  P  R  S  F  *  L  L  L  M  E   : V  R  L  S  Y  I  Y  L  E  L  V  S  H  L  G  K  *  T  V  K  I  Y  F  L  F  D  Q  M  L  Y  S  M  V  R  N  Q  S   : V  E  E  Y  H  I  V  S  H  N  L  D  L  A  Q  S  S  S :   T  D  L  E  G  T  *  I  G  P  L  L  A  L  K  V  *  R  R  N  L  L  L  L  W  S  *  G  M  G  L  I  A  V  Q  C  G  T  I  V  S  M  L  F  T  R :   S  L  L  I  R  R  P  C  Q  Q  N  S  Q  L  K  I  L  T  T  S  H  F  H  S  L  L  H  C  I  L  T  S  A :   L  L  *  Q  V  H  Q  L  M  V  *  K  V  A  K  L  *  T  R  F  L  I  P  Q  T  L  S  R  E  K  R  K  </first_frame>
            <second_frame>  R  T  S  V  E  S  K  K  D  L  L  F  A  N  P  *  *  F  C  H  Q  I  E  D  G  S  I  V  Y  D  L  V  L  L  S  L  N  L  L  K  I  S  A  S  Q  S  :  I  F  R  N  G  I  C  K  C  E  I  Y  *  R  V  G  E  F  T  Q  G  R  F  D  F  S  S  W  K  :  *  G  *  A  I  S  I  W  S  L  C  H  I  L  E  S  R  Q  *  R  S  T  F  C  S  T  R  C  C  I  Q  W  S  E  T  N  Q  :  W  R  N  T  T  L  F  P  T  I  W  T  W  P  N  P  A   : A  R  I  W  K  E  H  E  L  V  P  C  *  L  *  K  C  E  G  E  T  C  C  Y  C  G  A  K  G  W  A  L  *  P  C  N  V  G  L  *  F  P  C  S  L  Q   : D  H  S  *  *  E  D  P  V  N  R  T  H  S  *  K  Y  *  Q  Q  A  I  F  I  H  Y  C  T  A  Y  L  L  Q   : R  F  C  N  R  C  I  S  *  W  F  K  R  L  Q  N  S  K  Q  G  S  *  S  H  K  P  C  R  G  K  R  G  K </second_frame>
            <third_frame>   E  L  Q  L  K  A  K  K  T  Y  F  L  Q  I  L  S  N  F  A  I  K  *  K  M  A  A  L  S  M  T  W  S  C  S  P  L  T  S  S  K  F  R  R  V  N  R :   Y  S  G  M  A  F  A  S  V  K  S  T  E  G  L  G  N  L  P  K  V  V  L  T  S  P  H  G  S :   E  A  E  L  Y  L  F  G  A  C  V  T  S  W  K  V  D  S  K  D  L  L  F  V  R  P  D  A  V  F  N  G  Q  K  P  I  S :   G  G  I  P  H  C  F  P  Q  F  G  P  G  P  I  Q  Q  :  H  G  F  G  R  N  M  N  W  S  L  V  S  S  E  S  V  K  E  K  P  V  V  T  V  E  L  R  D  G  P  Y  S  R  A  M  W  D  Y  S  F  H  A  L  Y  K  :  I  T  L  D  K  K  T  L  S  T  E  L  T  V  K  N  T  D  N  K  P  F  S  F  T  T  A  L  H  T  Y  F  S  :  A  S  V  T  G  A  S  V  N  G  L  K  G  C  K  T  L  N  K  V  P  D  P  T  N  P  V  E  G  K  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5729" stop="5799"/>
                    <exon start="6025" stop="6111"/>
                    <exon start="6835" stop="6945"/>
                    <exon start="7204" stop="7255"/>
                    <exon start="7547" stop="7684"/>
                    <exon start="8184" stop="8282"/>
                    <exon start="8614" stop="8709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAALSMTWSCSPLTSSKFRRVNRYSGMAFASVKSTEGLGNLPKVVLTSPHGSEAELYLFGACVTSWKVDSKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGPIQQHGFGRNMNWSLVSSESVKEKPVVTVELRDGPYSRAMWDYSFHALYKITLDKKTLSTELTVKNTDNKPFSFTTALHTYFSASVTGASVNGLKGCKTLNKVPDPTNPVEGKEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15182" PGL_stop="14574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15182" e_stop="14574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="15182" e_stop="14574" e_length="609"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="14592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="14574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g18245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGAT</gDNA_template>
            <first_frame> S  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  V  Y  R  V  V  *  L  *  G  Y  S  R  S  N  I  C  C  F  C  E  R  C  S  F  F  R  S  W  Q  E  I  G  R  E  D  C  C  I  G  K  *  A  C  F  V  V  V  G  I  R  *  R  W  S  *  T  V  F  D </first_frame>
            <second_frame>  P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  R  Y  I  E  L  Y  N  S  K  G  I  H  A  L  T  F  V  A  S  V  K  D  V  L  S  F  D  L  G  K  K  L  E  E  R  I  A  V  L  A  N  E  L  A  L  W  L  S  E  S  D  N  D  G  R  E  R  C  L   </second_frame>
            <third_frame>   L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G  G  I  S  S  C  I  T  L  R  V  F  T  L  *  H  L  L  L  L  *  K  M  F  F  L  S  I  L  A  R  N  W  K  R  G  L  L  Y  W  Q  M  S  L  L  C  G  C  R  N  P  I  T  M  V  V  N  G  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15181" stop="14576"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRRYIELYNSKGIHALTFVASVKDVLSFDLGKKLEERIAVLANELALWLSESDNDGRERCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="40440" PGL_stop="39990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40440" e_stop="39990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="40440" e_stop="39990" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40440" stop="39990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG131-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCCAAGATGAGAAACCACAATCTCAACTTATTAGTTTCCAATAGAAACAAAGCTTTATAGACATGCTCAAATTAGAGAAATTAAGGCCAGCACAAGCACAACTATGGCCTAACGGTCAACGAAACTGGGCAGAAAAATTAGATGATGCTTTCCAGGTGGTGGATAGAGCTACCAAAACATGAACACCAGCGTTAAAATTTATTTTTTTTTTTTAAAAAAAAAAAAGTAGAATTTGCGTTTTTACTTCCCGCAGCGTTTGCAGCAAAAAATTCTCCCTAAATTTGTAAAAAGCAACTCAACATTTCCAAAGTCCCATACGAAAAAATGGAGTGAATGCAAAGCACTAATCACATTTTCAAAGAAAAAGGAATCGAAAAATAAACAGAGAAAATGAAGAAGATCATACCAGCCCTCGTCCGAAGAATCATAGCCAGAAGTAGACTGCCGAA</gDNA_template>
            <first_frame> G  P  R  *  E  T  T  I  S  T  Y  *  F  P  I  E  T  K  L  Y  R  H  A  Q  I  R  E  I  K  A  S  T  S  T  T  M  A  *  R  S  T  K  L  G  R  K  I  R  *  C  F  P  G  G  G  *  S  Y  Q  N  M  N  T  S  V  K  I  Y  F  F  F  L  K  K  K  K  *  N  L  R  F  Y  F  P  Q  R  L  Q  Q  K  I  L  P  K  F  V  K  S  N  S  T  F  P  K  S  H  T  K  K  W  S  E  C  K  A  L  I  T  F  S  K  K  K  E  S  K  N  K  Q  R  K  *  R  R  S  Y  Q  P  S  S  E  E  S  *  P  E  V  D  C  R  </first_frame>
            <second_frame>  V  Q  D  E  K  P  Q  S  Q  L  I  S  F  Q  *  K  Q  S  F  I  D  M  L  K  L  E  K  L  R  P  A  Q  A  Q  L  W  P  N  G  Q  R  N  W  A  E  K  L  D  D  A  F  Q  V  V  D  R  A  T  K  T  *  T  P  A  L  K  F  I  F  F  F  *  K  K  K  S  R  I  C  V  F  T  S  R  S  V  C  S  K  K  F  S  L  N  L  *  K  A  T  Q  H  F  Q  S  P  I  R  K  N  G  V  N  A  K  H  *  S  H  F  Q  R  K  R  N  R  K  I  N  R  E  N  E  E  D  H  T  S  P  R  P  K  N  H  S  Q  K  *  T  A  E </second_frame>
            <third_frame>   S  K  M  R  N  H  N  L  N  L  L  V  S  N  R  N  K  A  L  *  T  C  S  N  *  R  N  *  G  Q  H  K  H  N  Y  G  L  T  V  N  E  T  G  Q  K  N  *  M  M  L  S  R  W  W  I  E  L  P  K  H  E  H  Q  R  *  N  L  F  F  F  F  K  K  K  K  V  E  F  A  F  L  L  P  A  A  F  A  A  K  N  S  P  *  I  C  K  K  Q  L  N  I  S  K  V  P  Y  E  K  M  E  *  M  Q  S  T  N  H  I  F  K  E  K  G  I  E  K  *  T  E  K  M  K  K  I  I  P  A  L  V  R  R  I  I  A  R  S  R  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0213A01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 9144 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1828 bytes was the average size of a spliced alignment
$ 8072 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2690 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:05:02
-->
